dya_104

CTCTAAAGAAGTCGGGTTTTGATCGGAATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCATATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTCGACGTTGATGTGAAGATTACAAAAATA *********************************.(((...((((((.((((((((((..(((.((((.((.......((((..........))))......)).)))).)))..))))))))))))))))...)))...************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M026 head	V058 head	V052 head	V120 male body	M043 female body	M056 embryo
..................................................TTGGGATTTTTTAGATCAGC.............................................................................................................	20	0	2	2212.00	4424	3664	542	214	2	2	0
..................................................TTGGGATTTTTTAGATCAGCAG...........................................................................................................	22	0	2	1449.50	2899	280	1794	809	16	0	0
................................................GGTTGGGATTTTTTAGATCAGC.............................................................................................................	22	0	2	1230.50	2461	2276	121	63	0	0	1
...................................................TGGGATTTTTTAGATCAGCAGT..........................................................................................................	22	0	2	556.00	1112	0	777	325	8	2	0
..................................................TTGGGATTTTTTAGATCAGCA............................................................................................................	21	0	2	358.50	717	189	392	134	0	2	0
...................................................TGGGATTTTTTAGATCAGCAG...........................................................................................................	21	0	2	294.00	588	1	387	194	3	3	0
.................................................GTTGGGATTTTTTAGATCAGC.............................................................................................................	21	0	2	266.50	533	315	145	69	4	0	0
..................................................TTGGGATTTTTTAGATCAGCAGT..........................................................................................................	23	0	2	183.00	366	141	158	66	1	0	0
................................................GGTTGGGATTTTTTAGATCAGCA............................................................................................................	23	0	2	104.50	209	41	115	48	2	3	0
................................................GGTTGGGATTTTTTAGATCAGCAG...........................................................................................................	24	0	2	69.00	138	13	89	35	1	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAAC.....................................................	22	0	2	64.50	129	62	34	24	0	7	2
................................................GGTTGGGATTTTTTAGATCAG..............................................................................................................	21	0	2	44.50	89	6	52	30	1	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAA......................................................	21	0	2	39.50	79	2	47	24	0	6	0
..................................................TTGGGATTTTTTAGATCAG..............................................................................................................	19	0	2	28.50	57	14	35	8	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAGA..........................................................................................................	23	1	2	28.00	56	11	32	13	0	0	0
..................................................TTGGGATTTTTTAGATCATCAG...........................................................................................................	22	1	2	27.50	55	0	37	18	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCA.......................................................	20	0	2	26.50	53	7	25	17	0	4	0
..................................................TTGGGATTTTTTAGATCAGCT............................................................................................................	21	1	2	25.00	50	43	6	1	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAT...........................................................................................................	22	1	2	24.00	48	3	35	10	0	0	0
...................................................TGGGATTTTTTAGATCAGCA............................................................................................................	20	0	2	16.50	33	0	22	11	0	0	0
..................................................TTGGGATTTTTTATATCAGCAG...........................................................................................................	22	1	2	16.50	33	0	23	10	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAGTT.........................................................................................................	24	0	2	14.00	28	11	11	6	0	0	0
...................................................TGGGATTTTTTAGATCAGCAGTT.........................................................................................................	23	0	2	13.50	27	0	22	5	0	0	0
................................................AGTTGGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	11.50	23	12	11	0	0	0	0
..................................................TTGGGATTTTTTAGATCATC.............................................................................................................	20	1	2	10.50	21	1	11	9	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAA...........................................................................................................	22	1	2	9.50	19	3	9	7	0	0	0
..................................................TTGGGATTTTTTAGATCA...............................................................................................................	18	0	2	9.00	18	5	9	4	0	0	0
.........................................................................................................ACTGGCCTACTAAGTCCCAACAT...................................................	23	0	2	9.00	18	3	10	4	0	1	0
..................................................TTGGGATTTTTTAGATCAGCAGC..........................................................................................................	23	1	2	9.00	18	14	2	2	0	0	0
...................................................TGGGATTTTTTAGATCATCAGT..........................................................................................................	22	1	2	8.50	17	0	14	3	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAGG..........................................................................................................	23	1	2	8.50	17	17	0	0	0	0	0
................................................GTTTGGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	8.00	16	16	0	0	0	0	0
..................................................TTGGGATTTTTTATATCAGC.............................................................................................................	20	1	2	8.00	16	2	8	6	0	0	0
..................................................TTGGGCTTTTTTAGATCAGCAG...........................................................................................................	22	1	2	8.00	16	0	11	5	0	0	0
................................................GGTTGGGATTTTTTAGATC................................................................................................................	19	0	2	7.50	15	15	0	0	0	0	0
...................................................TGGGATTTTTTATATCAGCAGT..........................................................................................................	22	1	2	7.50	15	0	7	8	0	0	0
...................................................TGGGATTTTTTAGATCAGC.............................................................................................................	19	0	2	7.00	14	0	10	4	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAC...........................................................................................................	22	1	2	7.00	14	5	9	0	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................	25	0	2	7.00	14	1	7	6	0	0	0
...................................................TGGGATTTTTTATATCAGCAG...........................................................................................................	21	1	2	6.50	13	0	3	10	0	0	0
..................................................TTGGGATTTTTTAGATCAGCTG...........................................................................................................	22	1	2	6.50	13	0	12	1	0	0	0
.................................................GTTGGGATTTTTTAGATCAGCAG...........................................................................................................	23	0	2	6.50	13	2	7	3	0	1	0
...................................................TGGGATTTTTTAGATCAGCAGA..........................................................................................................	22	1	2	6.50	13	0	7	5	1	0	0
..................................................TTGGGATTTTTTAGATCAGCCG...........................................................................................................	22	1	2	6.00	12	0	9	3	0	0	0
................................................GGTTGGGATTTTTTAGATCA...............................................................................................................	20	0	2	6.00	12	1	5	5	1	0	0
.................................................GTTGGGATTTTTTAGATCAGCA............................................................................................................	22	0	2	6.00	12	5	5	2	0	0	0
...................................................TGGGATTTTTTAGATCAGCATT..........................................................................................................	22	1	2	5.50	11	0	9	2	0	0	0
..................................................TTGGGGTTTTTTAGATCAGC.............................................................................................................	20	1	2	5.50	11	2	5	4	0	0	0
.........................................................................................................ACTGGCCTACTAAGTCCCAACA....................................................	22	0	2	5.50	11	2	2	3	0	4	0
..................................................TTGGGATTTTTTAGATCATCA............................................................................................................	21	1	2	5.50	11	0	10	1	0	0	0
................................................GGTTGGGATTTTTTAGATCCGC.............................................................................................................	22	1	2	5.00	10	9	1	0	0	0	0
..................................................TTGGGGTTTTTTAGATCAGCAG...........................................................................................................	22	1	2	5.00	10	0	9	1	0	0	0
..................................................TTGGGATTTTTTAGATCAGCG............................................................................................................	21	1	2	5.00	10	7	2	1	0	0	0
..................................................TTGGGATTTTTTAGCTCAGCAG...........................................................................................................	22	1	2	5.00	10	0	10	0	0	0	0
.................................................GTTGGGATTTTTTAGATCAG..............................................................................................................	20	0	2	4.50	9	0	5	3	1	0	0
...................................................TGGGATTTTTTAGATCAGCAGC..........................................................................................................	22	1	2	4.50	9	0	7	2	0	0	0
..................................................TTGGGATTTTTTAGATCAGG.............................................................................................................	20	1	2	4.50	9	9	0	0	0	0	0
..................................................TTAGGATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	4.00	8	0	0	8	0	0	0
..................................................TTGGGATTTTTTAGATCGGC.............................................................................................................	20	1	2	4.00	8	6	2	0	0	0	0
..................................................TTGGGATTTTTTATATCAGCA............................................................................................................	21	1	2	4.00	8	0	6	2	0	0	0
.................................................GTTGGGATTTTTTAGATCATC.............................................................................................................	21	1	2	4.00	8	0	7	1	0	0	0
................................................AGTTGGGATTTTTTAGATCAGCA............................................................................................................	23	1	2	4.00	8	0	7	1	0	0	0
...................................................TGGGATTTTTTAGATCATCAG...........................................................................................................	21	1	2	4.00	8	0	6	2	0	0	0
...................................................TGGGATTTTTTAGATCAGCAT...........................................................................................................	21	1	2	3.50	7	0	4	3	0	0	0
...................................................TGGGCTTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	3.50	7	0	5	1	1	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAACT....................................................	23	1	2	3.50	7	3	1	2	0	1	0
..................................................TTGGGATTTTTTCGATCAGCAG...........................................................................................................	22	1	2	3.50	7	0	6	1	0	0	0
..................................................TTGGGCTTTTTTAGATCAGC.............................................................................................................	20	1	2	3.50	7	4	3	0	0	0	0
...................................................TGGGATTTTTTAGATAAGCAG...........................................................................................................	21	1	2	3.50	7	0	6	1	0	0	0
...................................................TGGGATTTTTTAGATCAGCCG...........................................................................................................	21	1	2	3.50	7	0	5	2	0	0	0
..................................................TTGGGATTTTTTAGATCAGCC............................................................................................................	21	1	2	3.00	6	3	3	0	0	0	0
...................................................TGGGAGTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	3.00	6	0	6	0	0	0	0
.................................................GTTGGGATTTTTTATATCAGC.............................................................................................................	21	1	2	3.00	6	0	5	1	0	0	0
..................................................TTGGGATTTTTTAGATCACCAG...........................................................................................................	22	1	2	3.00	6	0	6	0	0	0	0
................................................GGTTGGGATTTTTTAGATCATCAG...........................................................................................................	24	1	2	3.00	6	0	5	1	0	0	0
...................................................TGGGATTTTTTAGATCAGCCGT..........................................................................................................	22	1	2	3.00	6	0	4	2	0	0	0
..................................................TTGGGATTTTTTAGAGCAGCAG...........................................................................................................	22	1	2	3.00	6	0	3	3	0	0	0
................................................GGTTTGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	3.00	6	6	0	0	0	0	0
................................................AGTTGGGATTTTTTAGATCAGCAG...........................................................................................................	24	1	2	3.00	6	0	6	0	0	0	0
..................................................TTGGGATTTTTTAGATCAGCGG...........................................................................................................	22	1	2	3.00	6	0	6	0	0	0	0
..................................................TTGGGATTTTTTAGATCAAC.............................................................................................................	20	1	2	3.00	6	5	1	0	0	0	0
................................................GGTTGGGATTTTTTATATCAGC.............................................................................................................	22	1	2	3.00	6	0	3	3	0	0	0
..................................................TTGGGATTTTTTAGATCAGTAG...........................................................................................................	22	1	2	3.00	6	0	5	1	0	0	0
................................................GGTTGGGATTTTTTATATCAGCA............................................................................................................	23	1	2	3.00	6	0	2	4	0	0	0
..................................................TTGGGATTTTTTAGATCAGCATT..........................................................................................................	23	1	2	2.50	5	2	3	0	0	0	0
..................................................TTGGGGTTTTTTAGATCAGCTG...........................................................................................................	22	2	2	2.50	5	0	4	1	0	0	0
................................................GGTTGGGATTTTTTAGATCATC.............................................................................................................	22	1	2	2.50	5	1	1	3	0	0	0
...................................................TAGGATTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	2.50	5	0	1	4	0	0	0
...................................................TGGGATTTTTTAGATCGGCAGT..........................................................................................................	22	1	2	2.50	5	0	5	0	0	0	0
..................................................TTGGGATTTTTTAGGTCAGC.............................................................................................................	20	1	2	2.50	5	3	1	1	0	0	0
..................................................TTGGGATTTTTTAGATCAGCTGT..........................................................................................................	23	1	2	2.50	5	0	4	1	0	0	0
...................................................TGGGATTTTTTAGATCAGCTGT..........................................................................................................	22	1	2	2.50	5	0	4	1	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCC........................................................	19	0	2	2.50	5	1	0	3	0	1	0
..................................................TTGGGATTTTTTAGATCCGCAG...........................................................................................................	22	1	2	2.50	5	0	4	1	0	0	0
................................................GGGTGGGATTTTTTAGATCAGCA............................................................................................................	23	1	2	2.50	5	0	4	1	0	0	0
..................................................TTGGGATTGTTTAGATCAGCAG...........................................................................................................	22	1	2	2.50	5	0	5	0	0	0	0
...................................................TGGGGTTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	2.50	5	0	3	2	0	0	0
..................................................TTGGGATTTTTTAGATCGGCAG...........................................................................................................	22	1	2	2.50	5	0	3	2	0	0	0
................................................GGTTGGGACTTTTTAGATCAGC.............................................................................................................	22	1	2	2.00	4	4	0	0	0	0	0
..................................................TTGGGATTTTTGAGATCAGCAG...........................................................................................................	22	1	2	2.00	4	0	2	2	0	0	0
...................................................TGAGATTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	2.00	4	0	2	2	0	0	0
...................................................TGGGAGTTTTTAGATCAGCAG...........................................................................................................	21	1	2	2.00	4	0	3	1	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCT............................................................................................................	23	1	2	2.00	4	3	1	0	0	0	0
..................................................TTGGGTTTTTTTAGATCAGCAG...........................................................................................................	22	1	2	2.00	4	0	4	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCCA......................................................	21	1	2	2.00	4	0	0	4	0	0	0
..................................................TTGGGAGTTTTTAGATCAGCA............................................................................................................	21	1	2	2.00	4	0	3	1	0	0	0
..................................................TTGGGGTTTTTTAGATCAGCA............................................................................................................	21	1	2	2.00	4	0	3	1	0	0	0
..................................................TTGCGATTTTTTAGATCAGC.............................................................................................................	20	1	2	2.00	4	2	2	0	0	0	0
..................................................TTGGGATTTTGTAGATCAGC.............................................................................................................	20	1	2	2.00	4	1	2	1	0	0	0
................................................TGTTGGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	2.00	4	4	0	0	0	0	0
..................................................TTGGGATTTTTTAAATCAGCAG...........................................................................................................	22	1	2	2.00	4	0	0	4	0	0	0
................................................GGTTGGGATTTTTTAGATCAGT.............................................................................................................	22	1	2	2.00	4	3	1	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAACA....................................................	23	0	2	2.00	4	0	1	3	0	0	0
..................................................TTGGGAGTTTTTAGATCAGCAG...........................................................................................................	22	1	2	2.00	4	0	4	0	0	0	0
..................................................TTGGGATTTTTTAGACCAGC.............................................................................................................	20	1	2	2.00	4	0	4	0	0	0	0
...................................................TGGGATTTTTTATATCAGCATT..........................................................................................................	22	2	2	2.00	4	0	2	2	0	0	0
........................................................................................................TACTGTCCTACTAAGTCCCAAC.....................................................	22	1	2	2.00	4	3	0	0	0	0	1
..................................................TTGGGATTTTTTAGATCATCAT...........................................................................................................	22	2	2	2.00	4	0	4	0	0	0	0
..................................................TTGGGATGTTTTAGATCAGCAG...........................................................................................................	22	1	2	2.00	4	0	3	1	0	0	0
...................................................TGGGATTTTTTAGATCAGCAGG..........................................................................................................	22	1	2	2.00	4	0	2	2	0	0	0
...................................................TGGGATTTTTTAGATCAGCAAT..........................................................................................................	22	1	2	1.50	3	0	1	2	0	0	0
................................................AGTTGGGATTTTTTAGATCA...............................................................................................................	20	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTAGATCAGT.............................................................................................................	20	1	2	1.50	3	1	2	0	0	0	0
...................................................TGGGGTTTTTTAGATCAGCAG...........................................................................................................	21	1	2	1.50	3	0	1	2	0	0	0
..................................................TTGGGGTTTTTTTGATCAGC.............................................................................................................	20	2	2	1.50	3	0	3	0	0	0	0
..................................................TTAGGATTTTTTAGATCAGCA............................................................................................................	21	1	2	1.50	3	1	0	2	0	0	0
.........................................................................................................ACTGGCCTACTAAGTCCCAAC.....................................................	21	0	2	1.50	3	0	2	1	0	0	0
................................................GGTTGGGATTTTTTAGATCAGG.............................................................................................................	22	1	2	1.50	3	3	0	0	0	0	0
..................................................TTGGGATTTTTTAGATAAGC.............................................................................................................	20	1	2	1.50	3	1	2	0	0	0	0
...................................................TGGGATTTTTTAGGTCAGCAGT..........................................................................................................	22	1	2	1.50	3	0	3	0	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCCG...........................................................................................................	24	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTAGATCCGC.............................................................................................................	20	1	2	1.50	3	0	1	2	0	0	0
...................................................TGGGATTTTTTAGATCAGCGGT..........................................................................................................	22	1	2	1.50	3	0	3	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCACC.....................................................	22	1	2	1.50	3	0	2	1	0	0	0
..................................................TTGGGACTTTTTAGATCAGC.............................................................................................................	20	1	2	1.50	3	2	0	1	0	0	0
................................................GGGTGGGATTTTTTAGATCAG..............................................................................................................	21	1	2	1.50	3	0	3	0	0	0	0
................................................GGTTGGGATTTTTTAGTTCAGCA............................................................................................................	23	1	2	1.50	3	0	3	0	0	0	0
...................................................TGGGATTTTTTAGATCAGCAGTA.........................................................................................................	23	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTAGATTAGC.............................................................................................................	20	1	2	1.50	3	1	1	1	0	0	0
...................................................TGGGATTTTTGAGATCAGCAGT..........................................................................................................	22	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGAGATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.50	3	0	2	1	0	0	0
................................................GGGTGGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	1.50	3	1	2	0	0	0	0
..................................................TTGGGCTTTTTTAGTTCAGCAG...........................................................................................................	22	2	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTAGATCATCAGT..........................................................................................................	23	1	2	1.50	3	0	1	2	0	0	0
..................................................TTGGGATTTTTTAGATCACCAT...........................................................................................................	22	2	2	1.50	3	0	2	1	0	0	0
..................................................TTAGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.50	3	1	1	1	0	0	0
..................................................TTGGGATTTTTGAGATCAGC.............................................................................................................	20	1	2	1.50	3	0	1	2	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCAT...........................................................................................................	24	1	2	1.50	3	0	3	0	0	0	0
................................................GGTTGGGATTTTTTAGCTCAGC.............................................................................................................	22	1	2	1.50	3	1	1	1	0	0	0
.................................................GGTGGGATTTTTTAGATCAGC.............................................................................................................	21	1	2	1.50	3	0	3	0	0	0	0
................................................GCTTGGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	1.50	3	3	0	0	0	0	0
..................................................ATGGGATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.50	3	0	2	1	0	0	0
..................................................TTGGGATTTTTTAGATCAGA.............................................................................................................	20	1	2	1.50	3	3	0	0	0	0	0
.................................................CTTGGGATTTTTTAGATCAGCAG...........................................................................................................	23	1	2	1.50	3	0	2	1	0	0	0
..................................................TTGGGATTTTTTGGATCAGC.............................................................................................................	20	1	2	1.50	3	1	1	1	0	0	0
...................................................TGGGATTTTTTAGATCAGCAC...........................................................................................................	21	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGGTTTTTTAGATCAGCAGT..........................................................................................................	23	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTAGATAAGCAG...........................................................................................................	22	1	2	1.50	3	0	3	0	0	0	0
...................................................TGGGATTTTTTAGATAAGCAGT..........................................................................................................	22	1	2	1.50	3	0	2	1	0	0	0
....................................................GGGATTTTTTAGATCAGC.............................................................................................................	18	0	2	1.50	3	3	0	0	0	0	0
................................................GGTTGGGATTTTTTAGACCAGC.............................................................................................................	22	1	2	1.50	3	3	0	0	0	0	0
...................................................TGGGATTTTTTAGATCCGCAG...........................................................................................................	21	1	2	1.50	3	0	2	1	0	0	0
................................................GGTTGGGATTTTTTAGATAAGC.............................................................................................................	22	1	2	1.50	3	3	0	0	0	0	0
................................................GGTTGGGATTTTTTAGATCGGC.............................................................................................................	22	1	2	1.50	3	2	1	0	0	0	0
..................................................TTGGGATTTTTTATATCATCAG...........................................................................................................	22	2	2	1.50	3	0	2	1	0	0	0
..................................................TGGGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.50	3	0	2	1	0	0	0
..................................................TTGGGTTTTTTTAGATCAGC.............................................................................................................	20	1	2	1.50	3	0	3	0	0	0	0
..................................................TTGGGATTTTTTGGATCAGCAG...........................................................................................................	22	1	2	1.50	3	0	1	2	0	0	0
..................................................TTGTGATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.50	3	0	1	2	0	0	0
..................................................TTGGGATTTTTTAGATCAGCTT...........................................................................................................	22	2	2	1.50	3	1	2	0	0	0	0
..................................................TTGGGCTTTTTTCGATCAGCAG...........................................................................................................	22	2	2	1.00	2	0	1	1	0	0	0
..................................................TTTGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	2	0	0	0	0	0
................................................GGTTGGGATTTTTTAGGTCAGCAG...........................................................................................................	24	1	2	1.00	2	0	2	0	0	0	0
..................................................TGGGGGTTTTTTAGATCAGCAG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGATCAGTAG...........................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
................................................GGTTAGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	1.00	2	0	0	2	0	0	0
..................................................TTGGGATTTTTTAGATCAGCAGTTT........................................................................................................	25	1	2	1.00	2	1	0	1	0	0	0
...................................................TGGGACTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGCTCAGCAG...........................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGTTCAGCAG...........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGCTTTTTTAGATCAGCCG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
...............................................TGGTTGGGATTTTTTAGATCAGC.............................................................................................................	23	0	2	1.00	2	2	0	0	0	0	0
..................................................TTGGGATGTTTTAGATCAGCA............................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
...................................................TGGGATTTTGTAGATCAGCAGT..........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTGAGATAAGCAG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
...................................................TGGGAGTTTTTAGATCAGCAGTT.........................................................................................................	23	1	2	1.00	2	0	2	0	0	0	0
.........................................................................TATTGCTATATAGCCATATTT.....................................................................................	21	0	2	1.00	2	0	0	1	0	1	0
................................................GGTTGGGATTTTTTAGATCAGCG............................................................................................................	23	1	2	1.00	2	2	0	0	0	0	0
...................................................TGGGATTTTTTAGATCAG..............................................................................................................	18	0	2	1.00	2	0	2	0	0	0	0
..................................................TTGGAATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.00	2	0	1	1	0	0	0
..................................................TTTGGATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.00	2	1	0	1	0	0	0
...................................................TGGGATTTTTTAGTTCAGCAG...........................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGAATTTTTAGATCAGCAG...........................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGAGCAGC.............................................................................................................	20	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATTAGCAG...........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
................................................GGTTGGGCTTTTTTAGATCAGC.............................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCAGCCT...........................................................................................................	22	2	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGATCAACAG...........................................................................................................	22	1	2	1.00	2	0	0	2	0	0	0
..................................................ATGGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	0	1	1	0	0	0
................................................GGCTGGGATTTTTTAGATCAGCAG...........................................................................................................	24	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCCGCT............................................................................................................	21	2	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGAGTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCAC..............................................................................................................	19	1	2	1.00	2	1	1	0	0	0	0
................................................AGTTGGGATTTTTTAGATCAGCAGT..........................................................................................................	25	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCGGCTG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGCTTTTTTAGATCAGCGG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGCTCAGCCG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCCGCCG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
................................................GGTTGGGATTTTTTAGATCATCA............................................................................................................	23	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGGTCAGCAG...........................................................................................................	22	1	2	1.00	2	0	1	0	1	0	0
...................................................TGGGATTTTCTAGATCAGCAGT..........................................................................................................	22	1	2	1.00	2	0	1	1	0	0	0
................................................GGTCGGGATTTTTTAGATCAGCA............................................................................................................	23	1	2	1.00	2	1	1	0	0	0	0
..................................................TTGGGATTTTTTAGATCACC.............................................................................................................	20	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGATCTGCAGT..........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGATCAGCACT..........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTCGATCAGC.............................................................................................................	20	1	2	1.00	2	0	2	0	0	0	0
................................................GGTTGGGATTTTTTAGATCAAC.............................................................................................................	22	1	2	1.00	2	2	0	0	0	0	0
..................................................TTGGGGTTTTTTTGATCAGCAG...........................................................................................................	22	2	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGATCAGCGGT..........................................................................................................	23	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTATATCAG..............................................................................................................	19	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGATAAGCA............................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
...................................................TGGGATTTTTTACATCAGCAGT..........................................................................................................	22	1	2	1.00	2	0	1	1	0	0	0
...................................................TGGGATTTTTTAGATCTGCAG...........................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGTATTTTTTACATCAGCAC...........................................................................................................	22	3	2	1.00	2	0	0	2	0	0	0
................................................GGTTGGGATTTTTTAGCTCAGCAG...........................................................................................................	24	1	2	1.00	2	0	0	2	0	0	0
..................................................TTGGGATTTTTTTGATCAGC.............................................................................................................	20	1	2	1.00	2	1	1	0	0	0	0
................................................GGTTGGGATTTTTTAGTTCATCA............................................................................................................	23	2	2	1.00	2	0	2	0	0	0	0
...................................................TGGAATTTTTTAGATCAGCAGT..........................................................................................................	22	1	2	1.00	2	0	0	2	0	0	0
.................................................CTTGGGATTTTTTAGATCAGC.............................................................................................................	21	1	2	1.00	2	1	1	0	0	0	0
.................................................GTTGGGATTTTTTGGATCAGC.............................................................................................................	21	1	2	1.00	2	1	1	0	0	0	0
..................................................TTGGCATTTTTTAGATCAGCAG...........................................................................................................	22	1	2	1.00	2	1	0	1	0	0	0
..................................................TTGGGATTTTTTAAATCAGC.............................................................................................................	20	1	2	1.00	2	0	1	1	0	0	0
.................................................GTTGGGATTTTTTAGATCAGCTT...........................................................................................................	23	2	2	1.00	2	2	0	0	0	0	0
..................................................TTGGGATTTTTTAGATCACCA............................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGATCATCAC...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTGCGATTTTTTAGATCAGCAT...........................................................................................................	22	2	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTGAGATCAGCA............................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
................................................GGTTGGGATTTTTTAGATTAGC.............................................................................................................	22	1	2	1.00	2	2	0	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAAA.....................................................	22	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGATCTGCAG...........................................................................................................	22	1	2	1.00	2	0	0	2	0	0	0
..................................................TCGGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	1	1	0	0	0	0
..................................................TTGGGATTTTTTGGATCAGCA............................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAT......................................................	21	1	2	1.00	2	1	1	0	0	0	0
................................................GGTTGGGGTTTTTTAGATCAGCAG...........................................................................................................	24	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGGTGTTTTAGATCAGCAG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGAACAGC.............................................................................................................	20	1	2	1.00	2	1	1	0	0	0	0
..................................................TTGGGCTTTTTTAGATCAGCAGT..........................................................................................................	23	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGATCAACAGT..........................................................................................................	22	1	2	1.00	2	0	2	0	0	0	0
..................................................ATCGGATTTTTTAGATCAGCAG...........................................................................................................	22	2	2	1.00	2	0	1	1	0	0	0
................................................GGTTCGGATTTTTTAGATCAGC.............................................................................................................	22	1	2	1.00	2	2	0	0	0	0	0
................................................GGTTGGGATTTTTTATATCAG..............................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
.................................................GTTGGGATTTTTTAGATAAGC.............................................................................................................	21	1	2	1.00	2	1	1	0	0	0	0
..................................................TTGGGATTTTTTAGATCATCTG...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
................................................AGTTGGGATTTTTTAGATCAG..............................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCG.......................................................	20	1	2	1.00	2	2	0	0	0	0	0
...................................................TGGGATTTTGTAGATCAGCAG...........................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
...................................................TGGGATTTTTTAGATCCGCAGT..........................................................................................................	22	1	2	1.00	2	0	1	1	0	0	0
................................................GGTTGGGATTTTTTGGATCA...............................................................................................................	20	1	2	1.00	2	0	1	1	0	0	0
..................................................TTGGGATTTTTTAGATGAGCAG...........................................................................................................	22	1	2	1.00	2	0	1	0	1	0	0
.................................................GTTGGGATTTTTTAGATCAGCT............................................................................................................	22	1	2	1.00	2	1	1	0	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCAA...........................................................................................................	24	1	2	1.00	2	0	2	0	0	0	0
...................................................TGGGATTTTTTAGATCATCATT..........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
..................................................TTCGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	1	1	0	0	0	0
........................................................................................................TACTGGCCTACTAAGTCCCAAT.....................................................	22	1	2	1.00	2	0	1	1	0	0	0
..................................................CTGGGATTTTTTAGATCAGC.............................................................................................................	20	1	2	1.00	2	2	0	0	0	0	0
..................................................TTGGGACTTTTTAGATCAGCA............................................................................................................	21	1	2	1.00	2	0	1	1	0	0	0
........................................................TTTTTTAGATCAGCAGT..........................................................................................................	17	0	2	1.00	2	0	2	0	0	0	0
.........................................................................................................ACTGGCCTACTAAGTCCCAACT....................................................	22	1	2	1.00	2	2	0	0	0	0	0
..................................................TTGGGATTTTTTATATCAGCAT...........................................................................................................	22	2	2	1.00	2	0	2	0	0	0	0
................................................GGGTGGGATTTTTTAGATCATCAG...........................................................................................................	24	2	2	1.00	2	0	1	1	0	0	0
................................................GGTTGGGATTTTTTAGATCAT..............................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGATTTTTTAGCTCAGC.............................................................................................................	20	1	2	1.00	2	0	2	0	0	0	0
..................................................TTGGGTTTTTTTAGATCAGCA............................................................................................................	21	1	2	1.00	2	0	2	0	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCC............................................................................................................	23	1	2	1.00	2	0	2	0	0	0	0
...................................................TTGGGATTTTTAGATCAGCAG...........................................................................................................	21	3	6	0.83	5	0	3	2	0	0	0
...................................................TGGGATTGTTTGGATCAGCTGT..........................................................................................................	22	3	3	0.67	2	0	2	0	0	0	0
..................................................GGGGGATTTTTTAGATCAGC.............................................................................................................	20	2	3	0.67	2	2	0	0	0	0	0
..................................................TTGGGGTTTTTTAGTTCAGCGG...........................................................................................................	22	3	3	0.67	2	0	1	1	0	0	0
..................................................TTGGAATTTTTTAGATCATCAT...........................................................................................................	22	3	3	0.67	2	0	2	0	0	0	0
..................................................TGGGATTTTTTTAGATCAGCAGT..........................................................................................................	23	3	5	0.60	3	0	2	0	1	0	0
..................................................TGGGATTTTTTTAGATCAGCAG...........................................................................................................	22	3	5	0.60	3	0	1	2	0	0	0
................................................GGTTGGGATTTTTTAGATCAGCAGAT.........................................................................................................	26	1	2	0.50	1	1	0	0	0	0	0
..................................................TTGGGATTTTTTAGATCAGTGG...........................................................................................................	22	2	2	0.50	1	0	1	0	0	0	0
................................................GGCTGGGACTTTTTATATCAGCA............................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0
.................................................GTTCGGATTTTTTAGCTCAGC.............................................................................................................	21	2	2	0.50	1	0	1	0	0	0	0
................................................GGTTGGGATTTTTTCTATCAGCA............................................................................................................	23	2	2	0.50	1	0	1	0	0	0	0
.................................................GTTGGGATTTTTCAGATCAGCAG...........................................................................................................	23	1	2	0.50	1	1	0	0	0	0	0
........................................................................................................TACTGGCCTACTACGTCCCCAC.....................................................	22	2	2	0.50	1	0	1	0	0	0	0
................................................GGTTGGGTTTTTTTAGAGCAGCAG...........................................................................................................	24	2	2	0.50	1	0	1	0	0	0	0
.................................................GTGGGGATTTTTTAGATCATC.............................................................................................................	21	2	2	0.50	1	0	1	0	0	0	0
..................................................GTGGGATTTTTTAGGTCAGC.............................................................................................................	20	2	2	0.50	1	0	0	1	0	0	0
...................................................TGGGATTTTTTAGATCGGCAG...........................................................................................................	21	1	2	0.50	1	0	1	0	0	0	0
...................................................TGGGATTTTTTCGATCAGCAGT..........................................................................................................	22	1	2	0.50	1	0	1	0	0	0	0
..................................................TTGGGATTTTTTAGACCAGCA............................................................................................................	21	1	2	0.50	1	0	0	1	0	0	0
...................................................TGGGAGTTTTTAGATCTGCAG...........................................................................................................	21	2	2	0.50	1	0	1	0	0	0	0
................................................GGGTGGGATTTTTTAGATCATCA............................................................................................................	23	2	2	0.50	1	0	1	0	0	0	0
..................................................TTGGGATTTTTTAGATCATAA............................................................................................................	21	2	2	0.50	1	0	1	0	0	0	0
...................................................TGGGGTTTTTTGGATCAGCCGT..........................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
................................................GGTTAGGATTTTTTAGATCATC.............................................................................................................	22	2	2	0.50	1	0	1	0	0	0	0
..................................................ATGGGATTTTTTAGGGCAGCAG...........................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
..................................................TGGGGTTTTTTTAGATCAGCAG...........................................................................................................	22	2	2	0.50	1	0	0	1	0	0	0

Species	Coordinate	ID	Type	Alignment
droYak3	v2_chr3L_random_283:15531-15709 +	dya_104	confident	CTCTAA---------------AGAAGTCGGG----TT-TTGATCGGAATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTGATGT---------GAAGATTAC--AAAAA----TA
droEre2	scaffold_4784:21221169-21221342 +	der_131	confident	CTCTAA---------------AGAAGTCGGG----TT-TTAATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TT--------------GAATATTAA--AAAAA----AA
droSec2	scaffold_11:1487311-1487493 +	dse_189	confident	CTCCAA---------------AGAAGTCGGG----GT-TCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAA--AAATGTTAAAC
droSim2	3l:21084394-21084576 +	dsi-mir-193	Known_mirbase	CTCCAA---------------AGAAGTCGGG----GT-TCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAA--AAATGTTAAAC
dm3	chr3L:21567082-21567260 +	dme-mir-193	Known_mirbase	CTCCAA---------------AGAAGTCGGG----TT-TTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAG--AAAAA----TA
droEug1	scf7180000409472:386325-386505 +			CCTTAAA--------------AGAAGTCGGG----AC-TTATTCGAAATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA-------ATGGTGT---------TAAACTTAT--AAATC----TT
droBia1	scf7180000302377:1758719-1758899 -			CCACAAA--------------AGGAGTCGGC----GT-TTGATCGAGATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACG-------TTGGCGT---------GAACAGTAA--AAACT----TA
droTak1	scf7180000415388:255430-255595 +			CCTTAAC--------------AGGTGTCAGG----GC-TTAATC-------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA----------TTAATGC---------AATAA---T--AAAA------A
droEle1	scf7180000491255:2722735-2722920 -			CTTTAAA--------------TAAAGTCGGT----TTCTTGTTAGAAATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA-------ATAAAGTGCACCTGGTGAACTTTAC--AAA-------A
droRho1	scf7180000780059:195336-195524 -			ATTTAAA--------------AGAAGTCGGT----TTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCAT-ATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATG-------ATGAAGTGCAGTTAGTGAATATTAT--AAAAG----TA
droFic1	scf7180000453831:395550-395723 +			TTTTAA---------------AGAAATCAGT----GC-CAGATCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCAT-ATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCA-------GTA-------------GAATGTCTT--AAAAG----TG
droKik1	scf7180000302694:467018-467186 +			CTTAAAT--------------ATAAGCTGG-----------------TTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCAT-ATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATA-------ATGGTGT---------GCCAATTGT--AAATG----CT
droAna3	scaffold_13337:17070817-17070973 -	dan_319	confident	TCTTGAACAA-----------TGAAGT--------TC-CGAATCGAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT-ATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA-------------------------------------TT----GAAAA----TA
droBip1	scf7180000396641:558562-558730 -			TCTTGAACAA-----------TGAAGT--------AT-CGAATCCAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT-ATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATA---------------------------ATTAT--TGAAA----TT
dp5	XR_group6:2746023-2746200 -	dps-mir-193	Known_mirbase	ACGCGA------GGGTCAACCATAAGACGTGTAAAAC-TCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT-ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA------------------------------AT--AAGAC----TA
droPer2	scaffold_9:1042489-1042672 -	dpe_20	confident	CTGCAAACGCGAGGGTCAACTATAAGACGTGTAAAAC-TCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT-ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA------------------------------AT--AAGAC----TA
droWil2	scf2_1100000004540:1082180-1082324 -	dwi_124	confident	----------------------------------------------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTG------ACGAAATGAATTTATGT---------GAAAAT----------------
droVir3	scaffold_13049:17910652-17910767 +	dvi-mir-193	Known_mirbase	---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGT-A-TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAG------------------------------------------------------
droMoj3	scaffold_6680:23178993-23179105 +	dmo_3172		---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----T-TATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAG------------------------------------------------------
droGri2	scaffold_10030:24034-24176 -	dgr_57	candidate-rescued	---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGA-CCTT-TATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCATTAT-AAA---------TT-ATGT---------A--CATAAGCCAAAA-----AT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CTCTAA---------------AGAAGTCGGG----TT-TTGATCGGAATCCGTGAGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTGATGT---------GAAGATTAC--AAAAA----TA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	2	2212.00	4424	3664	2	0	0	214	542	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	2	1449.50	2899	280	0	0	0	809	1794	16	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	2	1230.50	2461	2276	0	1	0	63	121	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	2	556.00	1112	0	2	0	0	325	777	8	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	2	358.50	717	189	2	0	0	134	392	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	2	294.00	588	1	3	0	0	194	387	3	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	2	266.50	533	315	0	0	0	69	145	4	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	2	183.00	366	141	0	0	0	66	158	1	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	2	104.50	209	41	3	0	0	48	115	2	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	2	69.00	138	13	0	0	0	35	89	1	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	2	64.50	129	62	7	2	0	24	34	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	2	44.50	89	6	0	0	0	30	52	1	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	2	39.50	79	2	6	0	0	24	47	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	2	28.50	57	14	0	0	0	8	35	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	2	28.00	56	11	0	0	0	13	32	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	2	26.50	53	7	4	0	0	17	25	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	2	25.00	50	43	0	0	0	1	6	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	2	24.00	48	3	0	0	0	10	35	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	2	16.50	33	0	0	0	0	11	22	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	2	14.00	28	11	0	0	0	6	11	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	2	13.50	27	0	0	0	0	5	22	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	2	9.50	19	3	0	0	0	7	9	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	2	9.00	18	5	0	0	0	4	9	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	2	9.00	18	3	1	0	0	4	10	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	2	9.00	18	14	0	0	0	2	2	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	23	2	8.50	17	17	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	2	7.50	15	15	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	2	7.00	14	0	0	0	0	4	10	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	2	7.00	14	5	0	0	0	0	9	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	2	7.00	14	1	0	0	0	6	7	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	2	6.50	13	2	1	0	0	3	7	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	2	6.50	13	0	0	0	0	5	7	1	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	2	6.00	12	1	0	0	0	5	5	1	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	2	6.00	12	5	0	0	0	2	5	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	2	5.50	11	2	4	0	0	3	2	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	2	5.00	10	7	0	0	0	1	2	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	2	4.50	9	0	0	0	0	3	5	1	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	2	4.50	9	0	0	0	0	2	7	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	2	4.50	9	9	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAT...................................................................................................................................	21	2	3.50	7	0	0	0	0	3	4	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	2	3.50	7	3	1	0	0	2	1	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	2	3.00	6	3	0	0	0	0	3	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	2	2.50	5	1	1	0	0	3	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	2	2.00	4	3	0	0	0	0	1	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	2	2.00	4	3	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	2	2.00	4	0	0	0	0	3	1	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGG..................................................................................................................................	22	2	2.00	4	0	0	0	0	2	2	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	2	1.50	3	1	0	0	0	0	2	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	2	1.50	3	0	0	0	0	1	2	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	2	1.50	3	3	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	23	2	1.50	3	0	0	0	0	0	3	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	2	1.50	3	0	0	0	0	0	3	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	2	1.50	3	3	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAC...................................................................................................................................	21	2	1.50	3	0	0	0	0	0	3	0	0	0	0	0
........................................................................GGGATTTTTTAGATCAGC.....................................................................................................................................	18	2	1.50	3	3	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	2	1.50	3	1	0	0	0	0	2	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	2	1.00	2	1	0	0	0	1	0	0	0	0	0	0
...................................................................TGGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	23	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................TATTGCTATATAGCCAT-ATTT............................................................................................................	21	2	1.00	2	0	1	0	0	1	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAG......................................................................................................................................	18	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCCT...................................................................................................................................	22	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAC......................................................................................................................................	19	2	1.00	2	1	0	0	0	0	1	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCTT...................................................................................................................................	23	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAT.............................................................................	21	2	1.00	2	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCG..............................................................................	20	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCT....................................................................................................................................	22	2	1.00	2	1	0	0	0	0	1	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	2	1.00	2	0	0	0	0	1	1	0	0	0	0	0
............................................................................TTTTTTAGATCAGCAGT..................................................................................................................................	17	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACT...........................................................................	22	2	1.00	2	2	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	2	1.00	2	0	0	0	0	0	2	0	0	0	0	0

droEre2

CTCTAA---------------AGAAGTCGGG----TT-TTAATCGGAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TT--------------GAATATTAA--AAAAA----AA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	3907.00	3907	2	0	403	0	15	3487	0
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	3613.00	3613	41	0	831	0	78	2663	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	1044.00	1044	6	0	171	0	35	832	0
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	960.00	960	2	0	48	0	2	908	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	844.00	844	3	0	241	0	13	587	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	844.00	844	13	0	193	0	9	629	0
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	382.00	382	1	0	48	0	10	323	0
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	274.00	274	1	0	30	0	4	239	0
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	201.00	201	10	0	16	0	0	175	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	181.00	181	51	3	24	0	1	102	0
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	149.00	149	1	0	15	0	2	131	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	122.00	122	18	0	20	0	0	84	0
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	108.00	108	0	0	13	0	2	93	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	87.00	87	0	0	11	0	1	75	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	77.00	77	0	0	7	0	1	69	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	76.00	76	0	0	19	0	1	56	0
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	63.00	63	0	0	9	0	0	54	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	33.00	33	1	0	8	0	1	23	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	33.00	33	0	0	13	0	0	20	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	31.00	31	13	0	0	0	1	17	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	31.00	31	0	0	4	0	1	26	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	23.00	23	3	0	1	0	0	19	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	22.00	22	0	0	1	0	0	21	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	20.00	20	0	0	2	0	0	18	0
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	16.00	16	0	0	2	0	1	13	0
....................................................................GGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	15.00	15	0	0	0	0	0	15	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	14.00	14	0	0	3	0	1	10	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	14.00	14	2	0	1	0	0	11	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	14.00	14	0	0	3	0	0	11	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	13.00	13	6	0	1	0	0	6	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	12.00	12	0	0	0	0	0	12	0
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	12.00	12	0	0	3	0	0	9	0
.......................................................................TGGGATTTTTTAGATCAGCAT...................................................................................................................................	21	1	10.00	10	0	0	2	0	0	8	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	9.00	9	8	0	0	0	0	1	0
....................................................................GGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	9.00	9	0	0	0	0	0	9	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	8.00	8	0	0	0	0	0	8	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	8.00	8	0	0	1	0	0	7	0
....................................................................GGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	7.00	7	0	0	0	0	0	7	0
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	7.00	7	1	0	0	0	0	6	0
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	6.00	6	0	0	1	0	0	5	0
....................................................................GGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	5.00	5	0	0	1	0	0	4	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	5.00	5	0	0	0	0	0	5	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	1	5.00	5	0	0	1	0	0	4	0
................................................................................................................................TGGCCTACTAAGTCCCAACATT.........................................................................	22	1	4.00	4	2	0	0	0	0	2	0
...................................................................TGGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	23	1	4.00	4	0	0	1	0	0	3	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	4.00	4	0	0	1	0	0	3	0
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	4.00	4	0	0	1	0	0	3	0
....................................................................GGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	4.00	4	0	0	1	0	0	3	0
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	4.00	4	0	0	0	0	0	4	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	4.00	4	0	0	1	0	0	3	0
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3	0
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	3.00	3	0	0	1	0	0	2	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAT.............................................................................	21	1	2.00	2	0	0	0	0	0	2	0
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0
.......................................................................TGGGATTTTTTAGATCAG......................................................................................................................................	18	1	2.00	2	0	0	0	0	0	2	0
......................................................................TTGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0
.....................................................................GTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	2.00	2	0	0	0	0	0	2	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
.............................................................................................TATTGCTACATAGCCAT-ATTT............................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
......................................................................TTGGGATTTTTTAGATCAGCATA..................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2	0
....................................................................GGTTGGGATTTTTTAGATCAGCTT...................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.......................................................................TGGGATTTTTTAGATCAGCAAA..................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAT............................................................................	21	1	1.00	1	0	0	0	0	0	1	0
......................................................................TTGGGATTTTTTAGATCAGCACA..................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................TATTGCTACATAGCCAT-AT..............................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
............................................................................................................................CTACTGGCCTACTAAGTCCCA..............................................................................	21	1	1.00	1	0	0	1	0	0	0	0
.........................................................................GGATTTTTTAGATCAGCAG...................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

droSec2

CTCCAA---------------AGAAGTCGGG----GT-TCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAA--AAATGTTAAAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	1541.00	1541	1	1	2	1537
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	924.00	924	7	2	5	910
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	538.00	538	0	0	0	538
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	393.00	393	0	0	1	392
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	275.00	275	1	0	1	273
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	228.00	228	0	0	1	227
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	189.00	189	0	1	0	188
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	186.00	186	0	1	0	185
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	147.00	147	4	0	0	143
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	74.00	74	0	1	0	73
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	72.00	72	5	0	0	67
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	71.00	71	6	0	0	65
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	61.00	61	0	0	0	61
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	49.00	49	0	0	0	49
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	46.00	46	0	0	0	46
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	42.00	42	1	0	1	40
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	41.00	41	0	0	0	41
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	33.00	33	0	0	0	33
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	31.00	31	0	1	0	30
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	30.00	30	0	0	0	30
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	28.00	28	0	0	0	28
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	17.00	17	0	0	0	17
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	15.00	15	0	0	0	15
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	11.00	11	2	0	0	9
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	9.00	9	0	1	0	8
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	8.00	8	0	0	0	8
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	8.00	8	0	0	0	8
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	8.00	8	0	0	0	8
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	8.00	8	0	0	0	8
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	8.00	8	0	0	0	8
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	7.00	7	0	0	0	7
....................................................................GGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	6.00	6	0	0	0	6
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	6.00	6	0	0	0	6
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	6.00	6	0	0	0	6
....................................................................GGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	6.00	6	0	0	0	6
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	1	6.00	6	0	0	0	6
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	4.00	4	0	0	0	4
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	4.00	4	0	0	0	4
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	4.00	4	0	0	0	4
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	1	4.00	4	2	0	0	2
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	3.00	3	1	0	0	2
.......................................................................TGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	24	1	3.00	3	0	0	0	3
..............................................................................................................................ACTGGCCTACTAAGTCCCAA.............................................................................	20	1	3.00	3	0	0	0	3
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	3.00	3	0	0	0	3
.............................................................................................................................TACTGGCCTACTAAGTCCCAT.............................................................................	21	1	3.00	3	0	0	0	3
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	3.00	3	0	0	0	3
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	3.00	3	0	0	0	3
....................................................................GGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	3.00	3	0	0	0	3
....................................................................GGTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	25	1	2.00	2	0	0	0	2
.......................................................................TGGGATTTTTTAGATCAGCAT...................................................................................................................................	21	1	2.00	2	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCATA..................................................................................................................................	23	1	2.00	2	0	0	0	2
.....................................................................GTTGGGATTTTTTAGATC........................................................................................................................................	18	1	2.00	2	0	0	0	2
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	2.00	2	0	0	0	2
................................................................................................................................TGGCCTACTAAGTCCCAACA...........................................................................	20	1	2.00	2	0	0	0	2
.............................................................................................................................TACTGGCCTACTAAGTCCCTT.............................................................................	21	1	2.00	2	0	0	1	1
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	2.00	2	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	23	1	2.00	2	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	2.00	2	0	0	0	2
.............................................................................................TATTGCTATATAGCCAT-ATTTATAAAT......................................................................................................	27	1	1.00	1	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCT..............................................................................	20	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGTCT................................................................................................................................	25	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAAAA.................................................................................................................................	24	1	1.00	1	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCAACG...........................................................................	23	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGTTTG...............................................................................................................................	26	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGAA.................................................................................................................................	24	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGAAC................................................................................................................................	25	1	1.00	1	0	0	0	1
............................................................................................TTATTGCTATATAGCCAT-ATT.............................................................................................................	21	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	25	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAAA..................................................................................................................................	23	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCGA...................................................................................................................................	24	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	1	1.00	1	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAA...................................................................................................................................	21	1	1.00	1	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAC...................................................................................................................................	21	1	1.00	1	0	0	0	1
........................................................................................................................................TAAGTCCCAACATAATGAGAGT.................................................................	22	1	1.00	1	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCATT............................................................................	22	2	1.00	2	0	0	0	2
..............................................................................................................................ACTGGCCTACTAAGTCCTT..............................................................................	19	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGTT....................................................................................................................................	23	1	1.00	1	0	0	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCAACT...........................................................................	22	1	1.00	1	0	0	0	1
.........................................................................GGATTTTTTAGATCAGCA....................................................................................................................................	18	1	1.00	1	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAGTG.................................................................................................................................	23	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	1	1.00	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCAGAA.................................................................................................................................	26	1	1.00	1	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGTCC................................................................................................................................	25	1	1.00	1	0	0	0	1
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	1.00	1	1	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTAT................................................................................................................................	25	1	1.00	1	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAGAA.................................................................................................................................	23	1	1.00	1	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCC..............................................................................	20	1	1.00	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGTT....................................................................................................................................	21	2	0.50	1	0	0	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCATT............................................................................	21	2	0.50	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCACAG....................................................................................................................................	21	4	0.25	1	0	0	0	1

droSim2

CTCCAA---------------AGAAGTCGGG----GT-TCGATCGCAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAA--AAATGTTAAAC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	11546.00	11546	11045	15	27	0	4	453	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	6117.00	6117	110	0	0	1	133	5873	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	4547.00	4547	4291	6	6	0	14	230	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	1870.00	1870	8	0	0	1	29	1832	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	1830.00	1830	566	2	0	3	21	1229	2	0	2	4	1	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	1539.00	1539	2	0	0	0	33	1504	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	1426.00	1426	382	0	0	1	14	1029	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	1168.00	1168	5	0	0	0	34	1129	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	888.00	888	8	0	0	0	25	855	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	771.00	771	27	0	0	1	18	725	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	619.00	619	41	0	0	0	15	563	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	619.00	619	6	0	0	0	18	595	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	494.00	494	332	3	0	1	2	155	0	0	0	1	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	427.00	427	78	1	0	0	8	340	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	419.00	419	1	0	0	0	6	412	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	375.00	375	10	0	0	0	7	358	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAA.............................................................................	20	1	288.00	288	0	0	0	1	5	282	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGAT.........................................................................................................................................	18	1	253.00	253	4	0	0	0	3	246	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	236.00	236	0	0	0	0	5	229	0	0	1	1	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	223.00	223	0	0	0	0	2	214	1	3	1	2	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	190.00	190	58	0	0	0	3	129	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	173.00	173	138	0	1	0	1	33	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCC...............................................................................	18	1	167.00	167	5	0	0	0	4	158	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACAT..........................................................................	21	1	161.00	161	0	0	0	0	9	152	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	149.00	149	149	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	143.00	143	0	0	0	0	3	140	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	138.00	138	0	0	0	0	5	133	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	117.00	117	12	0	0	0	1	104	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	103.00	103	102	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	101.00	101	5	0	0	0	2	94	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	99.00	99	14	0	0	0	5	80	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	95.00	95	56	1	0	0	1	37	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	91.00	91	36	0	0	0	1	53	0	0	0	0	1	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAG......................................................................................................................................	18	1	84.00	84	0	0	0	0	2	82	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	76.00	76	0	0	0	0	1	75	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	67.00	67	2	0	0	0	1	64	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	58.00	58	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACA...........................................................................	20	1	52.00	52	0	0	0	0	0	52	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	42.00	42	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	23	1	26.00	26	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	21.00	21	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	1	19.00	19	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACATA.........................................................................	24	1	19.00	19	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	1	16.00	16	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACAT..........................................................................	24	1	13.00	13	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	12.00	12	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	12.00	12	2	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	10.00	10	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACATA.........................................................................	22	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAA.............................................................................	18	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAAC............................................................................	19	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	8.00	8	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	1	7.00	7	5	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GGGATTTTTTAGATCAGC.....................................................................................................................................	18	1	6.00	6	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	5.00	5	1	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GGCCTACTAAGTCCCAAC............................................................................	18	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
...................................................................TGGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	23	1	5.00	5	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATC........................................................................................................................................	18	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	4.00	4	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
........................................................................GGGATTTTTTAGATCAGCAG...................................................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTTAT...............................................................................................................................	25	1	4.00	4	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGAA.................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCCCAAC............................................................................	20	1	3.00	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	24	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	25	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATTTTTTAGATCAGCAG...................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................ATGGTTGGGATTTTTTAGATC........................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAAA..................................................................................................................................	23	1	2.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACATA.........................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GGCCTACTAAGTCCCAACAT..........................................................................	20	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAC......................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATTTTTTAGATCAGCAGT..................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTA................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GGCCTACTAAGTCCCAACA...........................................................................	19	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCT..............................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCATA..................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTTA................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACATAA........................................................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACC...........................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CTACTGGCCTACTAAGTCCCAAC............................................................................	23	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCT.......................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................TATGGTTGGGATTTTTTAGATC........................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................GGGATTTTTTAGATCAGCAGT..................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTC.................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCT.......................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGACT................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGAC.................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCCCAA.............................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.TCCAA---------------AGAAGTCGGG----GT-TC.......................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................TGGTTGGGATTTTTTAGATCAG......................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCACG..................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCCAA---------------AGAAGTCGGG----GT-TCGA.....................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCCCAACAT..........................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACATAA........................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAAAA.................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.TCCAA---------------AGAAGTCGGG----GT-T........................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACATAA........................................................................	25	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGAC.................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACGC..........................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTTATT..............................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGA.....................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCT...............................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAATT...........................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CCAA---------------AGAAGTCGGG----GT-TCGAA....................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................TTGGGATTTTTTAGATCTT......................................................................................................................................	19	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CTCCAA---------------AGAAGTCGGG----TT-TTGATCGCAATCCGTGTGTGCCCTTATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTT-CGACG-------TTCATGT---------GAAGATTAG--AAAAA----TA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	18771.00	18771	0	0	0	0	14	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	4	1	0	11	20	390	489	4	1	0	0	0	0	1	2	0	0	1	0	0	0	0	3	2	1	2	0	0	0	0	0	50	71	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	0	56	0	0	0	1	0	0	1	0	0	0	88	0	0	93	1	2	0	0	0	1	647	1	0	0	0	4	3	0	2	0	2	0	0	0	6	335	56	2	66	1	43	44	153	4	277	29	401	304	0	0	0	0	0	0	0	0	2	0	1	3	1	6	0	7	2	1	4	1	2	2	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1093	1304	0	1411	1	0	376	669	26	465	13	1279	1	3074	67	0	0	0	0	0	916	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	0	0	0	0	0	1	0	0	7	4	0	0	3	0	9	21	9	2	7	19	1	0	0	2	0	0	0	0	4	1	0	8	137	6	0	0	2	24	32	0	24	1	0	0	0	0	121	3	0	0	1	1	1	0	0	2	9	1	1	4	0	2	1	15	0	3	2	11	0	5	0	0	1	1	4	510	972	432	554	3	0	192	93	6	0	2	5	4	7	208	5	186	135	0	2	0	10	11	1	3	15	3	0	1	2	2	1	6	1	0	438	1	0	0	1	0	4	0	0	2	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	10513.00	10513	0	0	0	0	222	0	0	0	0	0	0	0	0	0	32	8	2	8	0	0	0	0	0	3	0	0	0	49	20	147	226	155	2	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	28	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	2	3	454	1	11	1	10	1	1	27	0	6	2	670	5	2	1467	20	18	2	0	5	17	4752	2	1	1	24	63	18	14	6	0	5	1	1	13	0	13	4	2	2	0	9	1	20	0	35	5	42	33	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	106	99	0	86	80	53	36	167	159	242	21	47	69	55	7	0	0	0	0	0	102	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	3	0	0	0	1	0	0	0	0	0	0	0	1	9	0	0	0	0	1	19	0	3	0	0	0	0	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	29	14	23	79	1	0	3	7	1	0	0	0	0	0	1	0	1	4	3	3	0	2	0	1	0	0	1	0	1	1	0	0	0	0	0	167	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	8259.00	8259	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	7	8	204	191	2	2	0	0	1	1	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	0	0	0	35	55	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	0	0	0	0	1	0	0	0	0	20	0	0	49	0	0	0	0	0	0	105	0	0	0	3	2	1	0	0	0	0	0	0	0	1	180	21	1	22	0	11	13	46	1	209	16	146	170	0	0	0	0	2	0	0	0	0	0	2	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	453	626	0	462	1	0	140	251	9	248	9	546	3	1365	26	0	0	0	0	0	329	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	0	6	1	2	0	4	1	0	0	0	0	0	0	0	2	0	0	4	101	3	0	0	0	13	95	0	14	0	0	0	0	0	55	1	0	0	1	1	0	1	0	1	3	0	2	2	1	1	0	6	0	3	3	7	1	6	1	0	0	2	2	294	351	262	307	0	0	37	21	2	0	1	5	1	1	53	0	43	49	0	3	1	3	2	3	1	1	1	0	0	0	0	0	1	0	0	430	0	0	1	0	0	3	0	0	1	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	7948.00	7948	0	0	0	0	190	3	1	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	0	0	0	15	11	65	366	261	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	73	41	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	2	2	293	0	0	1	0	1	0	6	0	1	0	486	0	0	1129	8	8	2	0	0	5	2630	4	1	0	19	12	4	7	6	1	0	0	0	7	0	22	7	0	1	0	1	1	5	0	43	3	37	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	122	167	0	105	32	16	83	285	69	392	11	47	9	122	6	0	0	0	0	0	227	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	10	0	0	0	0	0	24	0	3	0	0	0	0	0	65	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	32	13	16	101	0	0	3	1	0	0	0	0	0	0	3	0	1	5	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	129	0	0	0	0	0	1	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	7838.00	7838	0	0	0	0	12	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	7	10	169	247	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48	55	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	53	0	0	0	0	0	0	1	0	0	0	94	0	0	260	3	3	0	0	0	0	355	0	0	0	4	3	6	0	1	0	0	0	0	0	4	144	26	1	28	0	20	10	31	2	159	16	192	127	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	487	626	0	429	0	0	160	273	10	185	7	795	1	1260	42	0	0	0	0	0	439	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	1	0	3	0	0	0	0	3	1	0	0	0	0	0	3	29	2	0	0	0	9	17	0	4	0	1	0	0	0	28	3	0	2	1	0	1	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	125	195	145	184	0	0	23	16	3	0	0	1	0	0	38	0	43	36	0	0	0	0	0	0	0	2	0	1	2	1	0	1	0	0	0	82	0	0	0	0	0	1	0	3	0	0	0
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............................................................................................TTATTGCTATATAGCCAT-ATT.............................................................................................................	21	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	5	0	2	0	4	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	23	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	3	0	0	1	1	0	1	1	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAC...................................................................................................................................	21	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	2	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	23.00	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	8	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0

droEug1

CCTTAAA--------------AGAAGTCGGG----AC-TTATTCGAAATCCGCGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA-------ATGGTGT---------TAAACTTAT--AAATC----TT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCACAAA--------------AGGAGTCGGC----GT-TTGATCGAGATACGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATGTAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAATCCGACG-------TTGGCGT---------GAACAGTAA--AAACT----TA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CCTTAAC--------------AGGTGTCAGG----GC-TTAATC-------GTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTGTATAGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAAAGTTCA----------TTAATGC---------AATAA---T--AAAA------A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CTTTAAA--------------TAAAGTCGGT----TTCTTGTTAGAAATAC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATTTCGCCAT-ATTTATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATA-------ATAAAGTGCACCTGGTGAACTTTAC--AAA-------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATTTAAA--------------AGAAGTCGGT----TTCTTGATCGAAATCC--GTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACTTCGCCAT-ATTTATAAATTTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACAGGTTACGATG-------ATGAAGTGCAGTTAGTGAATATTAT--AAAAG----TA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTTTAA---------------AGAAATCAGT----GC-CAGATCGAAATCCGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTAT--AGCCAT-ATTTATTATTAATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCGCAGGCCATGTCA-------GTA-------------GAATGTCTT--AAAAG----TG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CTTAAAT--------------ATAAGCTGG-----------------TTCTGTGTGTGCCCTCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACATTGCCAT-ATTTTTAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGTTGCAATA-------ATGGTGT---------GCCAATTGT--AAATG----CT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCTTGAACAA-----------TGAAGT--------TC-CGAATCGAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT-ATTCATAAATTCTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTA-------------------------------------TT----GAAAA----TA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	1950.00	1950	2	0	0	63	11	1874
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	1933.00	1933	0	0	0	265	22	1646
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	1347.00	1347	14	1	0	640	56	636
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	738.00	738	4	1	0	205	49	479
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	736.00	736	16	0	0	332	16	372
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	474.00	474	2	0	0	43	5	424
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	306.00	306	2	0	0	45	5	254
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	295.00	295	2	0	0	172	7	114
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	285.00	285	4	0	0	51	8	222
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	269.00	269	114	2	0	20	5	128
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	229.00	229	0	0	0	33	4	192
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	213.00	213	37	0	0	13	0	163
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	156.00	156	0	0	0	16	5	135
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	136.00	136	2	1	0	50	10	73
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	128.00	128	22	0	0	16	2	88
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	115.00	115	0	0	0	17	0	98
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	106.00	106	1	0	0	15	4	86
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	65.00	65	37	0	0	7	0	21
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	52.00	52	1	0	0	23	1	27
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	47.00	47	1	0	0	13	0	33
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	41.00	41	0	0	0	17	0	24
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	41.00	41	2	0	0	15	1	23
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	40.00	40	0	0	0	7	1	32
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	26.00	26	0	0	0	7	0	19
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	26.00	26	0	0	0	1	2	23
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	25.00	25	0	0	0	8	2	15
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	24.00	24	0	0	0	1	0	23
....................................................................GGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	23.00	23	0	0	0	0	0	23
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	21.00	21	0	0	0	2	0	19
....................................................................GGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	19.00	19	0	0	0	0	0	19
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	18.00	18	0	0	0	7	0	11
.....................................................................GTTGGGATTTTTTAGATC........................................................................................................................................	18	1	16.00	16	0	0	0	0	0	16
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	15.00	15	3	0	0	6	1	5
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	14.00	14	12	0	0	2	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	13.00	13	6	0	0	0	0	7
.....................................................................GTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	23	1	12.00	12	0	0	0	1	0	11
.......................................................................TGGGATTTTTTAGATCAGCAT...................................................................................................................................	21	1	11.00	11	0	0	0	3	0	8
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	10.00	10	0	0	0	1	1	8
..............................................................................................................................ACTGGCCTACTAAGTCCCAA.............................................................................	20	1	9.00	9	5	0	0	1	0	3
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	9.00	9	0	0	0	7	0	2
....................................................................GGTTGGGATTTTTTAGAT.........................................................................................................................................	18	1	8.00	8	0	0	0	0	0	8
.....................................................................GTTGGGATTTTTTAGATCAGA.....................................................................................................................................	21	1	8.00	8	0	0	0	1	0	7
........................................................................GGGATTTTTTAGATCAGCAG...................................................................................................................................	20	1	7.00	7	6	0	0	1	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	7.00	7	2	0	0	0	0	5
....................................................................GGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	7.00	7	0	0	0	1	1	5
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	6.00	6	0	0	0	2	0	4
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	6.00	6	0	0	0	1	0	5
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	6.00	6	0	0	0	1	0	5
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	6.00	6	0	0	0	3	0	3
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	5.00	5	0	0	0	4	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	5.00	5	0	0	0	3	0	2
..............................................................................................................................ACTGGCCTACTAAGTCCCAACT...........................................................................	22	1	5.00	5	2	0	0	0	0	3
................................................................................................................................TGGCCTACTAAGTCCCAACAT..........................................................................	21	1	4.00	4	2	0	0	1	0	1
................................................................................................................................TGGCCTACTAAGTCCCAACATT.........................................................................	22	1	4.00	4	3	0	0	1	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	4.00	4	0	0	0	2	0	2
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	1	3.00	3	0	0	0	1	0	2
....................................................................GGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	3.00	3	0	0	0	0	1	2
....................................................................GGTTGGGATTTTTTAGATCAGCAC...................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	3.00	3	0	0	0	1	0	2
.......................................................................TGGGATTTTTTAGATCAGCAA...................................................................................................................................	21	1	3.00	3	0	0	0	1	0	2
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	1	3.00	3	0	0	0	2	0	1
....................................................................GGTTGGGATTTTTTAGATCAA......................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3
.......................................................................TGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0
......................................................................TTGGGATTTTTTAGATCAGCATA..................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	1	2.00	2	2	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACA...........................................................................	20	1	2.00	2	2	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCT..............................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................TGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	24	1	2.00	2	0	0	0	1	0	1
........................................................................GGGATTTTTTAGATCAGC.....................................................................................................................................	18	1	2.00	2	0	0	0	1	0	1
......................................................................TTGGGATTTTTTAGATCAGCTA...................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	1	2.00	2	0	0	0	1	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCAT.............................................................................	21	1	2.00	2	0	0	0	1	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	2.00	2	1	0	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAGTC.................................................................................................................................	23	1	2.00	2	0	0	0	1	1	0
.....................................................................GTTGGGATTTTTTAGATCT.......................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
.............................................................................................TATTGCTATATTGCCAT-ATTC............................................................................................................	21	1	2.00	2	1	0	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	1	2.00	2	0	0	0	0	0	2
.......................................................................TGGGATTTTTTAGATCAGCAC...................................................................................................................................	21	1	2.00	2	0	0	0	1	0	1
...............................................................................................................................CTGGCCTACTAAGTCCCAACA...........................................................................	21	1	2.00	2	2	0	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	2.00	2	0	0	0	1	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	2.00	2	1	0	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAG......................................................................................................................................	18	1	2.00	2	0	0	0	0	1	1
......................................................................TTGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2
.....................................................................GTTGGGATTTTTTAGATCAT......................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
............................................................................................TTATTGCTATATTGCCAT-ATT.............................................................................................................	21	1	2.00	2	0	0	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	2.00	2	0	0	0	2	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2
....................................................................GGTTGGGATTTTTTAGATCT.......................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................TGGGATTTTTTAGATCAGCAGTTC................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCAACATT.........................................................................	24	1	1.00	1	0	0	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droBip1

TCTTGAACAA-----------TGAAGT--------AT-CGAATCCAAATCTGTGTGTGCCCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTATATTGCCAT-ATTCATATATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTAGTTATGATA---------------------------ATTAT--TGAAA----TT	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACGCGA------GGGTCAACCATAAGACGTGTAAAAC-TCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT-ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA------------------------------AT--AAGAC----TA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................AGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	1375.00	1375	12	22	0	572	0	754	12	0	1	2
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	1320.00	1320	3	16	0	214	0	1074	13	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	1111.00	1111	0	39	1	56	1	999	5	2	0	8
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	1054.00	1054	0	41	12	957	0	44	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	523.00	523	0	12	0	34	0	477	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	486.00	486	1	12	0	38	0	434	1	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	466.00	466	0	3	0	6	0	454	3	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	397.00	397	0	9	0	4	0	381	3	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	354.00	354	0	7	0	59	0	275	3	0	10	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	259.00	259	0	7	1	35	0	213	3	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	164.00	164	0	5	0	6	0	152	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	134.00	134	0	1	0	26	0	107	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	85.00	85	0	21	0	36	0	28	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	78.00	78	0	3	0	73	0	2	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	72.00	72	0	5	2	59	0	6	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	72.00	72	1	3	0	2	0	65	1	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	70.00	70	0	6	0	63	0	1	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	66.00	66	0	23	0	20	0	23	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	58.00	58	0	4	0	52	0	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	43.00	43	0	4	0	0	0	38	1	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	36.00	36	0	2	0	31	0	3	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	32.00	32	0	1	0	7	0	23	1	0	0	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	30.00	30	0	1	0	5	0	24	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	30.00	30	0	1	0	10	0	19	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACC...........................................................................	23	1	27.00	27	0	1	0	26	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACC...........................................................................	22	1	26.00	26	0	0	0	25	0	1	0	0	0	0
............................................................................................................................CTACTGGCCTACTAAGTCCCAAC............................................................................	23	1	25.00	25	0	1	0	24	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	20.00	20	0	1	0	0	0	18	0	0	1	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	17.00	17	0	0	0	0	0	17	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	16.00	16	0	0	0	0	0	14	0	0	2	0
....................................................................AGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	14.00	14	0	0	0	4	0	10	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	13.00	13	0	0	0	0	0	13	0	0	0	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	13.00	13	0	0	0	0	0	13	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	12.00	12	1	3	0	4	0	4	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	12.00	12	0	0	0	12	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	9.00	9	0	0	0	1	0	8	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACATT.........................................................................	22	1	9.00	9	0	1	0	8	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	8.00	8	0	0	0	4	0	4	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAC..........................................................................	23	1	8.00	8	0	0	0	8	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	7.00	7	0	0	0	7	0	0	0	0	0	0
.............................................................................................TATTGCTATACAGCCGT-ATTAAT..........................................................................................................	23	1	7.00	7	0	0	0	0	0	7	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	6.00	6	0	0	0	6	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	6.00	6	0	0	0	4	0	2	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	5.00	5	0	0	0	0	0	5	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	5.00	5	0	0	0	0	0	5	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACT...........................................................................	22	1	5.00	5	0	0	0	5	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	5.00	5	0	0	0	0	0	5	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	1	4.00	4	0	0	0	0	0	4	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	4.00	4	0	0	0	1	0	3	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	4.00	4	0	0	1	1	0	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	4.00	4	0	0	0	0	0	4	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	4.00	4	0	0	0	3	0	1	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCCCAACA...........................................................................	21	1	3.00	3	0	1	0	2	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	24	1	3.00	3	0	1	0	0	0	2	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	3.00	3	0	0	0	0	0	3	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	1	3.00	3	0	0	0	2	0	1	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAA.............................................................................	20	1	3.00	3	0	2	0	0	0	1	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	25	1	3.00	3	0	0	0	1	0	2	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	3.00	3	0	1	0	0	0	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	2.00	2	0	0	0	1	0	1	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCCCAAC............................................................................	20	1	2.00	2	0	0	0	2	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAAC............................................................................	19	1	2.00	2	0	1	0	1	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCCCAACAT..........................................................................	21	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCC....................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	1	2.00	2	0	0	0	1	0	1	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	2.00	2	0	0	0	1	0	1	0	0	0	0
............................................................................................TTATTGCTATACAGCCGT-ATT.............................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................TCTACTGGCCTACTAAGTCCCAAC............................................................................	24	1	2.00	2	0	0	0	2	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGG..................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGA.....................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0	0	0	0
........................................................................GGGATTTTTTAGATCAGC.....................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................TATTGCTATACAGCCGT-ATT.............................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................................................................................................................AATCTTCTACTGGCCTACTAAGTCCCAAC............................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCT....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................GGCCTACTAAGTCCCAAC............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CTGCAAACGCGAGGGTCAACTATAAGACGTGTAAAAC-TCAATTGGAATATTTGTGTGCACCCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGCTATACAGCCGT-ATTAATAAATCTTCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTGGCT-TAACA------------------------------AT--AAGAC----TA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	2903.00	2903	0	32	0	1329	1515	27
....................................................................AGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	1640.00	1640	5	11	0	745	866	13
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	1546.00	1546	8	12	0	572	947	7
....................................................................AGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	1386.00	1386	0	14	0	637	732	3
....................................................................AGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	1321.00	1321	0	8	0	761	540	12
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	1016.00	1016	0	5	0	424	569	18
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	902.00	902	0	10	0	328	562	2
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	726.00	726	0	11	0	289	422	4
....................................................................AGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	677.00	677	0	0	0	243	423	11
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	586.00	586	0	7	0	287	281	11
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	321.00	321	0	1	0	147	170	3
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	190.00	190	0	24	0	81	85	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	140.00	140	0	14	0	49	77	0
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	113.00	113	0	10	0	39	64	0
....................................................................AGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	101.00	101	0	1	0	26	72	2
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	75.00	75	0	0	0	30	43	2
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	55.00	55	0	4	0	17	34	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	49.00	49	0	4	0	19	26	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	43.00	43	0	0	0	23	20	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	40.00	40	0	0	0	16	24	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	39.00	39	0	0	0	14	25	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	38.00	38	0	0	0	16	22	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	36.00	36	0	0	0	19	16	1
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	35.00	35	0	1	0	14	20	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	30.00	30	0	1	0	15	14	0
....................................................................AGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	30.00	30	0	0	0	12	18	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	27.00	27	0	2	0	7	18	0
....................................................................AGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	24.00	24	0	0	0	4	20	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	19.00	19	0	0	0	4	15	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	18.00	18	0	0	0	2	16	0
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	17.00	17	0	0	0	7	10	0
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	16.00	16	0	0	0	6	10	0
.............................................................................................TATTGCTATACAGCCGT-ATTAAT..........................................................................................................	23	1	15.00	15	0	0	0	7	8	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	13.00	13	0	0	0	7	6	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	13.00	13	0	0	0	4	9	0
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	11.00	11	0	0	0	3	8	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	11.00	11	0	0	0	0	10	1
....................................................................AGTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	25	1	11.00	11	0	0	0	4	7	0
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	11.00	11	0	0	0	4	7	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAA.............................................................................	20	1	10.00	10	0	0	0	4	6	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	7.00	7	0	1	0	3	3	0
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	7.00	7	0	0	0	3	4	0
....................................................................AGTTGGGATTTTTTAGATCAGCAC...................................................................................................................................	24	1	7.00	7	0	0	0	3	4	0
....................................................................AGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	7.00	7	0	0	0	3	4	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	7.00	7	0	1	0	3	3	0
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	7.00	7	0	1	0	2	4	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	6.00	6	0	0	0	2	2	2
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	6.00	6	0	0	0	0	6	0
............................................................................................TTATTGCTATACAGCCGT-ATT.............................................................................................................	21	1	5.00	5	0	0	0	0	5	0
....................................................................AGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	5.00	5	1	1	0	2	1	0
.............................................................................................TATTGCTATACAGCCGT-ATT.............................................................................................................	20	1	4.00	4	0	0	0	1	3	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	4.00	4	0	1	0	0	3	0
................................................................................................................................TGGCCTACTAAGTCCCAACATT.........................................................................	22	1	4.00	4	0	0	0	0	4	0
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	4.00	4	0	0	0	1	3	0
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	4.00	4	0	0	0	2	2	0
....................................................................AGTTGGGATTTTTTAGAT.........................................................................................................................................	18	1	4.00	4	0	0	0	2	2	0
....................................................................AGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
....................................................................AGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	3.00	3	0	0	0	3	0	0
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	1	3.00	3	0	0	0	0	3	0
......................................................................TTGGGATTTTTTAGATCAGCCT...................................................................................................................................	22	1	3.00	3	0	0	0	0	3	0
....................................................................AGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	3.00	3	0	0	0	0	3	0
............................................................................................TTATTGCTATACAGCCGT-ATTAAT..........................................................................................................	24	1	3.00	3	0	0	0	2	1	0
....................................................................AGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	3.00	3	0	1	0	0	2	0
....................................................................AGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	3.00	3	0	0	0	0	3	0
.....................................................................GTTGGGATTTTTTAGATCAGA.....................................................................................................................................	21	1	3.00	3	0	0	0	2	1	0
.............................................................................................TATTGCTATACAGCCGT-ATTA............................................................................................................	21	1	3.00	3	0	0	0	0	3	0
.......................................................................TGGGATTTTTTAGATCAGCAC...................................................................................................................................	21	1	3.00	3	0	0	0	0	3	0
......................................................................TTGGGATTTTTTAGATCAGCACC..................................................................................................................................	23	1	3.00	3	0	0	0	1	2	0
.......................................................................TGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	26	1	2.00	2	0	0	0	1	1	0
.......................................................................TGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	23	1	2.00	2	0	1	0	1	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTTT................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAAA..................................................................................................................................	25	1	2.00	2	0	0	0	1	1	0

droWil2

----------------------------------------------AATCTGTGTGTGCGCCCATTATGGTTGGGATTTTTTAGATCAGCAGTTATTGCTACAAGTCAAAAATTTAT-TATCATCTACTGGCCTACTAAGTCCCAACATAATGAGAGTAAAAACCACTG------ACGAAATGAATTTATGT---------GAAAAT----------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	18331.00	18331	14710	0	7	4	3610
....................................................................GGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	5563.00	5563	3131	0	1	2	2429
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	2263.00	2263	551	11	8	1	1692
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	819.00	819	545	0	2	1	271
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	707.00	707	0	2	8	1	696
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	433.00	433	180	0	2	1	250
.............................................................................................................................TACTGGCCTACTAAGTCCCAAC............................................................................	22	1	310.00	310	88	10	0	0	212
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	288.00	288	16	7	0	0	265
....................................................................GGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	283.00	283	59	1	0	0	223
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	252.00	252	2	1	1	1	247
....................................................................GGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	193.00	193	8	3	0	0	182
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	153.00	153	144	0	0	0	9
.............................................................................................................................TACTGGCCTACTAAGTCCCAA.............................................................................	21	1	129.00	129	5	4	0	0	120
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	116.00	116	55	0	1	0	60
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	89.00	89	37	0	0	1	51
....................................................................GGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	87.00	87	13	0	0	0	74
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	69.00	69	45	0	0	0	24
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	67.00	67	29	0	1	0	37
.............................................................................................................................TACTGGCCTACTAAGTCCC...............................................................................	19	1	61.00	61	46	0	0	0	15
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	49.00	49	5	0	0	0	44
....................................................................GGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	48.00	48	20	0	0	0	28
....................................................................GGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	46.00	46	3	0	0	0	43
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	41.00	41	23	0	0	0	18
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	40.00	40	30	0	0	0	10
.............................................................................................................................TACTGGCCTACTAAGTCCCAACT...........................................................................	23	1	34.00	34	16	1	0	0	17
......................................................................TTGGGATTTTTTAGATCAGCC....................................................................................................................................	21	1	32.00	32	24	0	0	0	8
......................................................................TTGGGATTTTTTAGATCAGA.....................................................................................................................................	20	1	22.00	22	7	0	0	0	15
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	22.00	22	10	0	0	0	12
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	20.00	20	14	0	0	0	6
....................................................................GGTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	24	1	19.00	19	1	0	0	0	18
..............................................................................................................................ACTGGCCTACTAAGTCCCAACA...........................................................................	22	1	19.00	19	1	3	0	0	15
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	18.00	18	0	0	0	1	17
......................................................................TTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	23	1	18.00	18	12	0	0	0	6
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	18.00	18	17	0	0	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCAACAT..........................................................................	23	1	15.00	15	2	5	0	0	8
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	15.00	15	0	0	0	0	15
....................................................................GGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	12.00	12	0	0	0	0	12
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	12.00	12	12	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	1	11.00	11	2	0	0	0	9
....................................................................GGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	11.00	11	2	0	0	0	9
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	2	8.00	16	16	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCATA..................................................................................................................................	23	1	8.00	8	6	0	0	0	2
....................................................................GGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	8.00	8	3	0	0	0	5
..............................................................................................................................ACTGGCCTACTAAGTCCCAAC............................................................................	21	1	7.00	7	2	3	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	6.00	6	6	0	0	0	0
......................................................................TTGGGATTTTTTAGATCT.......................................................................................................................................	18	1	6.00	6	2	0	0	0	4
.............................................................................................................................TACTGGCCTACTAAGTCCCAACA...........................................................................	23	1	6.00	6	0	0	0	0	6
.............................................................................................................................TACTGGCCTACTAAGTCCCAACC...........................................................................	23	1	6.00	6	3	1	0	0	2
..............................................................................................................................ACTGGCCTACTAAGTCCCAACT...........................................................................	22	1	6.00	6	2	0	0	0	4
................................................................................................................................TGGCCTACTAAGTCCCAACATT.........................................................................	22	1	5.00	5	1	1	0	0	3
..............................................................................................................................ACTGGCCTACTAAGTCCC...............................................................................	18	1	5.00	5	5	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	5.00	5	2	0	0	0	3
....................................................................GGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	5.00	5	2	0	0	0	3
.............................................................................................................................TACTGGCCTACTAAGTCCCAAA............................................................................	22	1	5.00	5	0	0	0	0	5
.......................................................................TGGGATTTTTTAGATCAGCAGG..................................................................................................................................	22	1	4.00	4	0	0	0	0	4
......................................................................TTGGGATTTTTTAGATCAGCACC..................................................................................................................................	23	1	3.00	3	2	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCC................................................................................	18	1	3.00	3	2	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	3.00	3	3	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCTC...................................................................................................................................	22	1	3.00	3	3	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCT.......................................................................................................................................	20	1	3.00	3	0	0	0	0	3
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	3.00	3	0	0	0	0	3
........................................................................GGGATTTTTTAGATCAGC.....................................................................................................................................	18	1	3.00	3	3	0	0	0	0
........................................................................GGGATTTTTTAGATCAGCAGT..................................................................................................................................	21	1	2.00	2	0	0	0	0	2
.............................................................................................................................TACTGGCCTACTAAGTCCCAT.............................................................................	21	1	2.00	2	0	1	0	0	1
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	2.00	2	0	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCCT...................................................................................................................................	22	1	2.00	2	2	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAGCAC...................................................................................................................................	24	1	2.00	2	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGTTC................................................................................................................................	25	1	2.00	2	1	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCATC..................................................................................................................................	23	1	2.00	2	2	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAA...................................................................................................................................	21	1	2.00	2	0	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCAGTA.................................................................................................................................	24	1	2.00	2	2	0	0	0	0
....................................................................GGTTGGGATTTTTTAGATCAA......................................................................................................................................	21	1	2.00	2	1	0	0	0	1
.............................................................................................TATTGCTACAAGTCAAAAATTTAT-TAT......................................................................................................	27	1	2.00	2	0	0	0	0	2
..............................................................................................................................ACTGGCCTACTAAGTCCCAACATT.........................................................................	24	1	2.00	2	0	0	0	0	2
......................................................................TTGGGATTTTTTAGATCAGCAGTCC................................................................................................................................	25	1	2.00	2	1	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCC.......................................................................................................................................	20	1	2.00	2	0	0	0	0	2
....................................................................GGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	1	2.00	2	2	0	0	0	0
........................................................................GGGATTTTTTAGATCAGCAG...................................................................................................................................	20	1	2.00	2	0	0	0	0	2
.............................................................................................TATTGCTACAAGTCAAAAATTTAT-T........................................................................................................	25	1	2.00	2	0	0	0	0	2
..........................................................................GATTTTTTAGATCAGCAG...................................................................................................................................	18	1	2.00	2	1	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAG......................................................................................................................................	18	1	2.00	2	0	0	0	0	2
....................................................................GGTTGGGATTTTTTAGATCACA.....................................................................................................................................	22	1	1.00	1	0	0	0	0	1
....................................................................GGTTGGGATTTTTTAGATCAC......................................................................................................................................	21	1	1.00	1	0	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCCC...................................................................................................................................	22	1	1.00	1	0	0	0	0	1
..............................................................................................................................ACTGGCCTACTAAGTCCCA..............................................................................	19	1	1.00	1	0	0	0	0	1
.......................................................................TGGGATTTTTTAGATCAGCAGTCC................................................................................................................................	24	1	1.00	1	0	0	0	0	1
......................................................................TTGGGATTTTTTAGATCAGCAGTCT................................................................................................................................	25	1	1.00	1	1	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.............................................................................................................................TACTGGCCTACTAAGTCCCAAG............................................................................	22	1	1.00	1	0	0	0	0	1

droVir3

---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATATATATATGT-A-TCGTAAATCTTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAAAACCTCAG------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................AGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	9659.00	9659	28	7372	10	0	0	0	1	0	0	2	0	0	0	0	248	146	7	18	139	92	0	138	236	0	0	0	0	0	2	2	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	88	0	0	1099	5	0	0	0	0	0	0	6	6	1	1	1	4	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	2013.00	2013	8	1362	5	0	1	2	0	0	0	1	0	0	0	0	33	25	1	4	37	22	0	37	59	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	399	3	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	1689.00	1689	15	1148	2	0	0	0	0	0	0	0	0	0	0	0	13	8	2	3	24	12	0	29	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	417	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	1545.00	1545	0	65	7	0	0	2	0	0	0	0	0	0	0	0	200	129	12	28	160	65	1	124	292	0	0	0	1	0	1	2	0	5	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	442	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	1382.00	1382	0	31	3	0	0	0	0	0	0	0	0	0	0	0	86	67	3	5	92	50	1	48	113	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	871	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAAT............................................................................	22	1	1333.00	1333	0	367	39	0	0	0	0	0	0	0	0	0	0	0	203	109	12	27	86	72	0	168	170	0	0	0	1	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	67	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	1102.00	1102	0	0	5	0	1	2	2	0	0	0	0	0	0	0	238	154	3	11	122	54	0	79	203	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	219	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTC...............................................................................	19	1	616.00	616	6	594	3	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTC...............................................................................	18	1	544.00	544	1	536	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	505.00	505	0	12	0	0	0	1	0	0	0	0	1	0	0	0	76	46	0	5	44	27	1	25	103	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	158	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	446.00	446	0	63	2	0	0	0	0	0	0	0	0	0	0	0	44	29	1	5	26	18	0	31	60	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	164	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	431.00	431	0	0	3	0	0	1	0	0	0	0	0	0	0	0	50	24	3	5	44	25	0	34	50	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	184	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	407.00	407	0	25	3	0	0	0	0	0	0	0	0	0	0	0	50	39	1	2	42	16	0	46	57	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	124	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	406.00	406	0	109	1	0	0	0	0	0	0	0	0	0	0	0	6	6	0	0	12	6	0	7	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	245	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	365.00	365	0	31	1	0	0	0	0	0	0	0	0	0	0	0	36	31	1	6	39	25	1	37	44	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	107	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAA.............................................................................	21	1	327.00	327	0	33	10	0	0	0	0	0	0	0	0	0	0	0	49	38	2	1	33	26	0	60	48	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	312.00	312	0	292	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCA..............................................................................	20	1	310.00	310	2	33	23	0	0	0	0	0	0	0	0	0	0	0	32	26	2	3	25	23	0	52	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	296.00	296	0	7	1	0	0	0	0	0	0	0	0	0	0	0	50	18	2	0	12	12	0	11	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	146	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	166.00	166	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	1	5	3	0	0	12	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	133	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	143.00	143	2	31	1	0	0	0	0	0	0	0	0	0	0	0	9	7	0	1	14	4	0	6	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	53	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAAT............................................................................	21	1	107.00	107	1	22	11	0	0	0	0	0	0	0	0	0	0	0	11	7	2	2	8	6	0	16	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	102.00	102	0	52	0	0	0	0	0	0	0	0	0	0	0	0	1	4	1	1	2	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCA....................................................................................................................................	20	1	91.00	91	0	0	1	0	0	0	0	0	0	0	0	0	0	0	17	13	0	1	9	5	0	12	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATA...........................................................................	22	1	89.00	89	0	6	7	0	0	0	0	0	0	0	0	0	0	0	13	6	1	4	12	8	0	17	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATT...........................................................................	22	1	53.00	53	0	8	2	0	0	0	0	0	0	0	0	0	0	0	7	2	1	1	5	2	0	11	11	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATAT..........................................................................	23	1	48.00	48	1	2	1	0	0	0	0	0	0	0	0	0	0	0	7	10	1	0	3	4	0	11	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAATT...........................................................................	23	1	44.00	44	0	19	1	0	0	0	0	0	0	0	0	0	0	0	3	0	2	2	1	2	0	4	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCA..............................................................................	19	1	35.00	35	0	7	7	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	3	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	30.00	30	0	8	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	26.00	26	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAA.............................................................................	20	1	25.00	25	0	2	2	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	5	3	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	25.00	25	0	10	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	21.00	21	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	2	2	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	20.00	20	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	20.00	20	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAAC............................................................................	22	1	18.00	18	0	16	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGG.....................................................................................................................................	22	1	16.00	16	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATC........................................................................................................................................	18	1	15.00	15	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................TGGCCTACTAAGTCTCAATATT.........................................................................	22	1	14.00	14	0	6	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	13.00	13	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGAT.........................................................................................................................................	18	1	13.00	13	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAA...................................................................................................................................	23	1	12.00	12	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	2	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	12.00	12	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	24	1	11.00	11	0	3	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	10.00	10	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	10.00	10	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCT....................................................................................................................................	22	1	9.00	9	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	8.00	8	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	25	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATT........................................................................................................................................	19	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	6.00	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCG....................................................................................................................................	23	1	6.00	6	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAAA............................................................................	22	1	6.00	6	0	2	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAT...................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGG.....................................................................................................................................	21	1	5.00	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCT..............................................................................	20	1	5.00	5	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGC..................................................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCT................................................................................	18	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAC......................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	4.00	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAGA..................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCG.......................................................................................................................................	20	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCTT...................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGT.....................................................................................................................................	20	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCTT...................................................................................................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGG..................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGT.....................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGG.....................................................................................................................................	20	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGTTGGGATTTTTTAGATCT.......................................................................................................................................	20	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCG....................................................................................................................................	21	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATTTTTTAGATCAGCAG...................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................CTACTGGCCTACTAAGTCTCAAT............................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATATT.........................................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................TGGGATTTTTTAGATCAGCAA...................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAATAA..........................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAAG............................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAT.............................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCTCAAT............................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCC....................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................CTGGCCTACTAAGTCTCAA.............................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCC..............................................................................	20	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAATA----T-TATCATAAGTTCTCTACTGGCCTACTAAGTCTCAATATAATGGGAGTAAACACCTCAG------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................AGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	22	1	2092.00	2092	11	0	769	1282	2	28
....................................................................AGTTGGGATTTTTTAGATCAG......................................................................................................................................	21	1	1484.00	1484	2	0	597	867	0	18
......................................................................TTGGGATTTTTTAGATCAGCAG...................................................................................................................................	22	1	561.00	561	6	1	209	336	0	9
....................................................................AGTTGGGATTTTTTAGATCA.......................................................................................................................................	20	1	401.00	401	3	0	153	242	0	3
......................................................................TTGGGATTTTTTAGATCAGC.....................................................................................................................................	20	1	373.00	373	1	0	141	230	0	1
....................................................................AGTTGGGATTTTTTAGATCAGCA....................................................................................................................................	23	1	178.00	178	1	0	46	129	0	2
....................................................................AGTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	24	1	152.00	152	1	0	67	82	1	1
....................................................................AGTTGGGATTTTTTAGATCAGCT....................................................................................................................................	23	1	147.00	147	0	0	56	90	0	1
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	140.00	140	0	0	49	86	0	5
......................................................................TTGGGATTTTTTAGATCAGCA....................................................................................................................................	21	1	110.00	110	0	0	36	73	0	1
.............................................................................................................................TACTGGCCTACTAAGTCTCAAT............................................................................	22	1	78.00	78	12	0	28	38	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGT..................................................................................................................................	23	1	67.00	67	0	0	27	37	0	3
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	62.00	62	0	0	25	36	0	1
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	47.00	47	0	0	24	22	0	1
.....................................................................GTTGGGATTTTTTAGATCAGC.....................................................................................................................................	21	1	43.00	43	2	0	17	23	0	1
.............................................................................................................................TACTGGCCTACTAAGTCTCA..............................................................................	20	1	36.00	36	1	0	19	16	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	29.00	29	0	0	11	18	0	0
....................................................................AGTTGGGATTTTTTAGATCAGT.....................................................................................................................................	22	1	26.00	26	0	0	10	16	0	0
....................................................................AGTTGGGATTTTTTAGATC........................................................................................................................................	19	1	20.00	20	0	0	5	15	0	0
......................................................................TTGGGATTTTTTAGATCAG......................................................................................................................................	19	1	20.00	20	0	0	6	14	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAA.............................................................................	21	1	20.00	20	2	0	9	9	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATAT..........................................................................	23	1	20.00	20	3	0	6	11	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATA...........................................................................	22	1	18.00	18	5	0	6	7	0	0
.....................................................................GTTGGGATTTTTTAGATCAG......................................................................................................................................	20	1	16.00	16	0	0	8	8	0	0
....................................................................AGTTGGGATTTTTTAGAT.........................................................................................................................................	18	1	15.00	15	0	0	5	10	0	0
....................................................................AGTTGGGATTTTTTAGATCAT......................................................................................................................................	21	1	10.00	10	0	0	7	3	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAT...................................................................................................................................	24	1	10.00	10	0	0	6	4	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAAT............................................................................	21	1	10.00	10	1	0	5	4	0	0
......................................................................TTGGGATTTTTTAGATCAGCAT...................................................................................................................................	22	1	9.00	9	0	0	5	4	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAATT...........................................................................	22	1	8.00	8	0	0	4	4	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGA..................................................................................................................................	23	1	8.00	8	0	0	4	4	0	0
....................................................................AGTTGGGATTTTTTAGATT........................................................................................................................................	19	1	7.00	7	0	0	5	2	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCTT...................................................................................................................................	24	1	6.00	6	0	0	2	4	0	0
....................................................................AGTTGGGATTTTTTAGATCAGA.....................................................................................................................................	22	1	5.00	5	0	0	2	3	0	0
................................................................................................................................TGGCCTACTAAGTCTCAATATT.........................................................................	22	1	4.00	4	0	0	2	1	1	0
......................................................................TTGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	24	1	4.00	4	0	0	1	3	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCAA.............................................................................	20	1	4.00	4	0	0	1	3	0	0
......................................................................TTGGGATTTTTTAGATCA.......................................................................................................................................	18	1	4.00	4	0	0	0	4	0	0
.....................................................................GTTGGGATTTTTTAGATCA.......................................................................................................................................	19	1	3.00	3	0	0	1	2	0	0
................................................................................................................................TGGCCTACTAAGTCTCAATAT..........................................................................	21	1	3.00	3	0	0	2	1	0	0
....................................................................AGTTGGGATTTTTTAGATCT.......................................................................................................................................	20	1	3.00	3	0	0	1	2	0	0
......................................................................TTGGGATTTTTTAGATCAGCAA...................................................................................................................................	22	1	3.00	3	0	0	2	1	0	0
.......................................................................TGGGATTTTTTAGATCAGC.....................................................................................................................................	19	1	2.00	2	0	0	1	1	0	0
......................................................................TTGGGATTTTTTAGATCAGCAC...................................................................................................................................	22	1	2.00	2	0	0	0	2	0	0
....................................................................AGTTGGGATTTTTTAGATCAGTTT...................................................................................................................................	24	1	2.00	2	0	0	0	2	0	0
......................................................................TTGGGATTTTTTAGATCAGCAGC..................................................................................................................................	23	1	2.00	2	0	0	1	1	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCC....................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTCA..............................................................................	19	1	2.00	2	0	0	1	1	0	0
....................................................................................................................................CTACTAAGTCTCAATA...........................................................................	16	1	1.00	1	0	0	0	1	0	0
....................................................................AGTTGGGATTTTTTAGAA.........................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
..............................................................................................................................ACTGGCCTACTAAGTCTC...............................................................................	18	1	1.00	1	0	0	1	0	0	0
...................................................................TAGTTGGGATTTTTTAGATCAGC.....................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
....................................................................AGTTGGGATTTTTTAGATCATA.....................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0
......................................................................TTGGGATTTTTTAGATCAGCT....................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGCAC...................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................TACTGGCCTACTAAGTCTCAT.............................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................TAGTTGGGATTTTTTAGATCAG......................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................AGTTGGGATTTTTTAGATCAGAT....................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
.....................................................................GTTGGGATTTTTTAGATCAGCC....................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0

droGri2

---------------------------------------------------GCGTGTGCCCTCATTATAGTTGGGATTTTTTAGATCAGCAGTTATTGATAAAGA-CCTT-TATCGTAAATCTTCTACTGGCCTACTAAGTCCCAATATAATGGGAGTAAAACCCTCATTAT-AAA---------TT-ATGT---------A--CATAAGCCAAAA-----AT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................TACTGGCCTACTAAGTCCCAAT............................................................................	22	1	9.00	9	9	0
.......................................................................TGGGATTTTTTAGATCAGCAG...................................................................................................................................	21	1	2.00	2	1	1
.............................................................................................................................TACTGGCCTACTAAGTCCCA..............................................................................	20	1	1.00	1	1	0
.......................................................................TGGGATTTTTTAGATCAGCAGT..................................................................................................................................	22	1	1.00	1	1	0
.......................................................................TGGGATTTTTTAGATCAGCAGTT.................................................................................................................................	23	1	1.00	1	1	0
.....................................................................GTTGGGATTTTTTAGATCAGCAG...................................................................................................................................	23	1	1.00	1	0	1
.....................................................................GTTGGGATTTTTTAGATCAGCA....................................................................................................................................	22	1	1.00	1	0	1

dya_104

v2_chr3L_random_283:15581-15659 +

Known Ortholog

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.1	-26.1	-26.0