dya_1008

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CAAGGTGGCGGACAGGCCCCAGAACGGACCCACGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCAAACGCCCGCGAGCGGGTCGAGTGCGCAGCAGCAACAGCAACAGAATGCACAGCAGCAGCAGCAGCATCAGGGCTCGCAGCAGCAGCAACAGAATGTGGTGCAGCAGCAGAATGTGGCGCAGCAGCAGCACATGCAGCAGCAGCAACAACAGCAGC ************************************************.........(((((((((..((.(((....((.....(((((......((((((....)))).)).((((((.((.((....(((......)))......)).)).)).)))).))))).....))...)))...))...)))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M043 female body	V058 head	V046 embryo	M056 embryo
.............................................................................................................................................................................................................................AGCACATGCAGCAGCAGCA...........	19	0	3	0.33	1	1	0	0	0
.........................................................................................................................................................................................ATAATATGGTGTAGCAGCAGA.............................................	21	3	5	0.20	1	0	0	1	0
.............................................ATCGGGGAATAATGGTTC............................................................................................................................................................................................	18	2	5	0.20	1	0	1	0	0
.........................GGGCCCACGCGCGCTACAC...............................................................................................................................................................................................................	19	3	8	0.13	1	1	0	0	0
...................................................................................................................................................................................AGTAACTGAATGTGGTGC......................................................	18	2	10	0.10	1	0	1	0	0
.............................................AACCGGTAATAATGGTTCG...........................................................................................................................................................................................	19	3	15	0.07	1	0	1	0	0
....................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGCAGC	23	0	20	0.05	1	0	0	0	1
...................................................................................................................................................GCAACAGCAGCAGCATCAGG....................................................................................	20	1	20	0.05	1	1	0	0	0

GTTCCACCGCCTGTCCGGGGTCTTGCCTGGGTGCGGGCGTTGTGTTAGTCCATTATTACCAAGTGATGAGGATCGATTATCAGTTTACGGGAGGGTTTGCGGGCGCTCGCCCAGCTCACGCGTCGTCGTTGTCGTTGTCTTACGTGTCGTCGTCGTCGTCGTAGTCCCGAGCGTCGTCGTCGTTGTCTTACACCACGTCGTCGTCTTACACCGCGTCGTCGTCGTGTACGTCGTCGTCGTTGTTGTCGTCG ************************************************.........(((((((((..((.(((....((.....(((((......((((((....)))).)).((((((.((.((....(((......)))......)).)).)).)))).))))).....))...)))...))...)))))).))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V058 head	M026 head	M043 female body
...............CGGGGTCTGGCCTGGGTA..........................................................................................................................................................................................................................	18	2	4	0.25	1	1	0	0
....................TCGTGCCTGGGTGCGAGGGT...................................................................................................................................................................................................................	20	3	4	0.25	1	1	0	0
....................................................................................TTATGGGAGGGTTGGCGGGT...................................................................................................................................................	20	3	9	0.11	1	0	1	0
....................TCTTCCCTAGCTGCGGGCG....................................................................................................................................................................................................................	19	3	16	0.06	1	0	1	0
........................GCCTGGGTGCCGGGGTT..................................................................................................................................................................................................................	17	2	17	0.06	1	1	0	0
...................................................................................................................................................................................................................................ACGTCGTCGTCCATGTTGTC....	20	2	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droYak3	3R:11243388-11243638 +	dya_1008	CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AATGC---ACAGCAGCAGC------------------------------------------AGCAGCATCAG---GGCTCGCAGCAGCA---------------------GCAACAGAATGTGGTGCAGCA---GCAGAATGTGGCGCAGCAGCAGCACAT---GCAGCAGCAGCAACAACAGCAGC
droEre2	scaffold_4770:14411879-14412126 -	der_628	CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAAC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GCCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAGAATGTAGCACAGCAGCAGCACAT---GCAGCAGCAGCAACAACAGCAGC
droSec2	scaffold_0:14752911-14753152 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AACAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAAAATGTGGCGCAGCAGCAGCACAT---GCAGCAG------CAACAGCAGC
droSim2	3r:13890818-13891059 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AACAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAAAATGTGGCGCAGCAGCAGCACAT---GCAGCAG------CAACAGCAGC
dm3	chr3R:7201511-7201758 +		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGACCG---CGAGCGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAGAATGTGGCGCAGCAGCAGCATAT---GCAGCAGCAGCAGCAACAGCAGC
droEug1	scf7180000409797:834742-834986 +		CAAAGTA----GCGGATAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAATGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAGCAG---------------------------------------------------------------AAT------------------------------GC---------------------TCAGCAGCAACATCAG---AGCTCGCAACAGCA------------------GCAACAACAGCAGCAAGCGCAGCA---ACAGAATGTGGCGCAACAACAGCATAT---GCAGCAGCA---ACAGCAGCAGC
droBia1	scf7180000302075:3552469-3552725 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAGCGCCTGTGTCGAGTGG----------------TGGGTCGAATGGGCAGCAGC--------------------------------------------------------------AAC---AGCAGCAG------------------------------------------------CAGCAGCAGCAACAGAAT------------------------------GC---------------------CCAGCAGCAACATGCG---AGTGCGCAGCAACAGCAACAGCAGCAGCAGACGTC---------------------------------GCAGCAGCAACAGCACCT---GCAACAGCAGCAGCAACAACAGC
droTak1	scf7180000415763:230921-231147 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------AAATGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCGTCGCGAGTGG-------------------CTCGAGTGGGCAGCAGC--------------------------------------------------------------AGC---AGCAACAG---------------------------------------------------------------ACG------------------------------TC---------------------GCAACAGCAACATGTTAGTAACGTG---CAACAACAACAGAC---------GCCGCAA---------------------------------CAGCAGCAACATTT---GCAGCAGCAA---CAGCAACCAC
droEle1	scf7180000491080:2493030-2493295 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCATCGCGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CCAGCGG-------------------GTCGAGTGGGCAGCAAC--------------------------------------AGCAGCAGCAGCAGCAGCAACAGCAAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------GCAGCAGCAACATCAG---GTCGCGCAGCAGCAACAACAGCA---------GCCGCAACA---------GCAGCA---GCAGAGTGTGGGGCAA---------CC---GCAGCAGCACCTGCAGCAGCAGC
droRho1	scf7180000779097:111026-111270 -		CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGTGG-------------------GTCGAGTGGGCAGCAGC--------------------------------------------------------------AACAGCAACAGCAG---------------------------------------------------------------AAT------------------------------GC---------------------ACAGCAGCAACATCAG---GTATCGCAGCAGCA------------------GCAACAGCAGC------CGCAGCA---GCCGAATGTGGCGCAACAACAGCATTT---GCAGCAGCAGCAGCAACAGCAGC
droFic1	scf7180000453912:1686718-1686971 -		CAAGGTG----GCGGACAGG------------------------CCGCA--------AAACGGACAAA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGAACG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AACAGCAGCAGCAG---------------------------------------------------------------AATGC---ACAGCAGCAGCAGCAGCAACACAGCTCGCAGC---------------------AACAACAG---------TC---------------------------GCAGCAACAG---------CAGCCACCGCAAAATGTGTCGCAGC---AACACAT---ACAACAGCAACAGCAGCAACAGC
droKik1	scf7180000302276:549554-549798 -		CAAGGTG----GCGGACCGG------------------------CCCCA--------GAACGGACCCG---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCTCCCAACCGCCGG---CGAGCGG-------------------GGCGAGTGCGCAGCAGC--------------------------------------------------------------AGC---AGCA---G---------------------------------------------------------------AATGC---GCCGCAGCAGCAGCAGCCACCAAGTGC---------------------CCAACAACAACATCCG---GGCTCCCAGCAGCA------------------GCAGCAG---------------------CAAAACGCAGTGCAGCAACAGCACTT---GCAGCAG---------CAGCAGC
droAna3	scaffold_13340:10624107-10624330 -		CAAGGTG----GCAGACCGG------------------------CCCCA--------GAACGGACCAA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCGCCCAGCCGTCCG---CG----------------------------AATGCGCAGCAGC--------------------------------------------------------------AGT---TGCAGCAG---------------------------------GCTCAGG------------------------GATC---CCAGCAGCAACAGCAGCAGCCAGGATCGCAAC---------------------AGCCACAGCCA---AGTTCGCAGCAGCA---------------------GCAG---------------------CAGAATGTGGTG------------------------------CAGCAACAGC
droBip1	scf7180000396374:452420-452643 +		CAAGGTG----GCAGACCGG------------------------CCCCA--------GAACGGACCCA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCGCCCAGCCGTCCG---CG----------------------------AATGCGCAGCAGC--------------------------------------------------------------AGC---TGCAGCAG---------------------------------GCTCAGG------------------------GATC---CCAGCAGCAACAGCAGCAGCCAGGATCGCAAC---------------------AGCCACAGCCA---AGCTCGCAGCAGCA---------------------------------------GCA---GCAGAATGTGGCGCAG------------------------------CAACAGC
dp5	2:29212744-29212997 -	dps_862	CAAAGTG----GCGGACAGAGGAGGA------------CCCGGAGCCCA--------GAACGGCCCCA---CGCCGACCACACAATCAGGTAATAATGGTTCACTACTCCTAGCC--CCTA----G--------------------------TCAAATG-CCCCCCCAACCGCC-G---CCAGCGG------------TGGTCGTGGCCAATGCCCAGCAGC--------------------------------------------------------------AGC---AGCAACAG------------------------------------------------CAGCAGCAGCAGCAGAAC------------------------------GT---------------------GCAGCAGCAGCAGCAG---AATGTGCCACAGCA------------------GCAGCAGCA---------------------GCAGGCACCGCAACAGA---ATCC---C------CAGCAGCAACAGCAGC
droPer2	scaffold_21:634992-635226 -	dpe_1153	AAGG-TGT---GGGAGTCGG------------------------CCACACCGATGTCGGACGGGCCAT---CGCCCTC----------------------------------------------------------------------------------------------------------------------------------GCAGGTGCAGGTGC--------------------------------------------------------------AAC---AGCAACAGCAGGCCCTGCCCCTAGGCCAGCAGCAGCAGCAGGCCATGG---------------------------CCCAGCAGCAGCAACAGCAGCAGCAGCAGTCG---------------CTCGTCCAGCAACAGCCACTA---CAGGTCC---------------------------------------AGCAGCAGCA---GCAGCAGGTGCCACAGCAGCAGGTCCAGCAGCAGCAGCAGGTCCAGCAGCAGC
droWil2	scf2_1100000004902:4277704-4277966 -	dwi_2476	CAAAGTA----GCCGATCGCAGCGGACACAGCGGCAATACTGGCATCCA--------GAATGGCCCCA---CGCCGGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAACCGCCTA---CGGGCAACAATCTTGCCGGTAATC-CGAACAATGTGCAACAAC--------------------------------------AGCAGC------------------AACAACAGCAACAA---------------------------------------------------------------AAT------------------------------GC---------------------ACAGCAACAACACCCA---TCGTCGGCACAGCA------------------GCCGCAACA------------TCA---GCCAAGTGTTCCCCAG---------------------------CCAGCGCCGC
droVir3	scaffold_13049:1701733-1701973 +		CAGGCGG----GCATACTTA------------------------GTCCG--------GGACCA----G---CGGC----------------------AGCGCATCACCACGAGGC--CA---GCAGCTCGGCGACTGGTCGCTCCTCGCGCGCCGAACG-CGATCATCACCACC-A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---CAGCAGCACCAACA------------------GCACCAACAGCAGCAGCAGCAGCA---GCAACAGCAGCGGGAACAGCAGCGCGA---GCAGCAGCAGCAGGCACAGCAGC
droMoj3	scaffold_6473:1195550-1195797 +		CAAGGAG----CGTGCCGTG------------------------CCACA--------GAGCGCAAT-T---TGTCCGGGCTGCAATAAGATATTTCTGGGTCGTCGCTTGCAGCGTCATTAC---G--------------------------TCAAGTATCCCGACCATATGCCC---------AG-------------------TGTGATCGCTCATCAGGAACAGCA-----------------------AC------ATCAGCAGCAGCAGCAGCAA---------------------------------------------------GA---------------------------------------------------------------------------------------------GCAACAG---CAACAGCAACAGCA------------------GCAGCAACAGCAGCAGCAGCAGCA---GCAGCA---GCAGCAGCAGCGGCAGCA---GCAACAGCTGCAGCAGCAGCAGC
droGri2	scaffold_15074:7620742-7621061 -	dgr_254	GAAGGTC-GTCGCGGATCGGG---GA------------ACGGGCGCCCA--------AAATGGTCCGA---CGCCAGCAACACAATCAGGTAATAATGGTTCACTACTACTAGCT--AATA----G--------------------------TCAAATG-CCCGCACAGCAGCA-------------------------------------------GCAGC------AGGCAAGTCAGAGTCAAAGTCAAAACAGCAACAGC---------------------AGC---AGCA---G------------------------CAA------CAACAGTAATGTTGT--------------CAATGCACAGCAGCAGCAACAGCAGCAGCAACTTGCACAACAGCAGCAGCATAGCGCACAGCAGCAACTT---------GCACAGCAACAACAACAGCA---------------------------GCAGCA---ACA------ACAACAGCAGCAGCAACA---GCAGCAGCAGCAGCAGCAACAGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droYak3

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AATGC---ACAGCAGCAGC------------------------------------------AGCAGCATCAG---GGCTCGCAGCAGCA---------------------GCAACAGAATGTGGTGCAGCA---GCAGAATGTGGCGCAGCAGCAGCACAT---GCAGCAGCAGCAACAACAGCAGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACAT---GCAGCAGCAGCA...........	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAGCAGC	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAAC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GCCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAGAATGTAGCACAGCAGCAGCACAT---GCAGCAGCAGCAACAACAGCAGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............GGACAGG------------------------CCCCA--------GAACGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------------GCAGCAACAGAA....................................................................	19	18	0.06	1	0	0	0	0	1	0	0

droSec2

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AACAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAAAATGTGGCGCAGCAGCAGCACAT---GCAGCAG------CAACAGCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------------GCAGCAACAGA.....................................................................	19	20	0.05	1	0	0	0	1

droSim2

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AACAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAAAATGTGGCGCAGCAGCAGCACAT---GCAGCAG------CAACAGCAGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGCAACAGAAT...................................................................	15	17	0.06	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

dm3

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGACCG---CGAGCGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------CCAGCAGCAGCATCAG---GGCTCGCAGCAGCA------------------GCAGCAACAGAATGTGGTGCAGCA---GCAGAATGTGGCGCAGCAGCAGCATAT---GCAGCAGCAGCAGCAACAGCAGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................CCCTCCCAAACGACCG---CGT..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................ATCAGGTAATAATGGTTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGCAGCAGCATAT---GAT....................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------...................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGCAGCAGCA------------------GCAGC...........................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAT---GCAGCAGCAGCAGCA........	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AA.........................................................................................................................................................................................	19	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCGCAGCAGC--------------------------------------------------------------AAC---AGCAA.............................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA.....	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAGCAGC--------------------------------------------------------------AAC---AGCAACAG---------------------------------------------------------------AA.........................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAGCA..	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGC...	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GCAGCAGCAGCAGCAACA.....	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

CAAAGTA----GCGGATAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAATGG-------------------GTCGAGTGCGCAGCAGC--------------------------------------------------------------AAC---AGCAGCAG---------------------------------------------------------------AAT------------------------------GC---------------------TCAGCAGCAACATCAG---AGCTCGCAACAGCA------------------GCAACAACAGCAGCAAGCGCAGCA---ACAGAATGTGGCGCAACAACAGCATAT---GCAGCAGCA---ACAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAGCGCCTGTGTCGAGTGG----------------TGGGTCGAATGGGCAGCAGC--------------------------------------------------------------AAC---AGCAGCAG------------------------------------------------CAGCAGCAGCAACAGAAT------------------------------GC---------------------CCAGCAGCAACATGCG---AGTGCGCAGCAACAGCAACAGCAGCAGCAGACGTC---------------------------------GCAGCAGCAACAGCACCT---GCAACAGCAGCAGCAACAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAAGGTG----GCGGACAGG------------------------CCCCA--------AAATGGACCCA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCGTCGCGAGTGG-------------------CTCGAGTGGGCAGCAGC--------------------------------------------------------------AGC---AGCAACAG---------------------------------------------------------------ACG------------------------------TC---------------------GCAACAGCAACATGTTAGTAACGTG---CAACAACAACAGAC---------GCCGCAA---------------------------------CAGCAGCAACATTT---GCAGCAGCAA---CAGCAACCAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCATCGCGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CCAGCGG-------------------GTCGAGTGGGCAGCAAC--------------------------------------AGCAGCAGCAGCAGCAGCAACAGCAAC---AGCAACAG---------------------------------------------------------------AAT------------------------------GC---------------------GCAGCAGCAACATCAG---GTCGCGCAGCAGCAACAACAGCA---------GCCGCAACA---------GCAGCA---GCAGAGTGTGGGGCAA---------CC---GCAGCAGCACCTGCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAAGGTG----GCGGACAGG------------------------CCCCA--------GAACGGACCCA---CGCCCGCATCACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGCCCG---CGAGTGG-------------------GTCGAGTGGGCAGCAGC--------------------------------------------------------------AACAGCAACAGCAG---------------------------------------------------------------AAT------------------------------GC---------------------ACAGCAGCAACATCAG---GTATCGCAGCAGCA------------------GCAACAGCAGC------CGCAGCA---GCCGAATGTGGCGCAACAACAGCATTT---GCAGCAGCAGCAGCAACAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAGGTG----GCGGACAGG------------------------CCGCA--------AAACGGACAAA---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAAACGAACG---CGAGCGG-------------------TTCGAGTGCGCAGCAGC--------------------------------------------------------------AACAGCAGCAGCAG---------------------------------------------------------------AATGC---ACAGCAGCAGCAGCAGCAACACAGCTCGCAGC---------------------AACAACAG---------TC---------------------------GCAGCAACAG---------CAGCCACCGCAAAATGTGTCGCAGC---AACACAT---ACAACAGCAACAGCAGCAACAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAAGGTG----GCGGACCGG------------------------CCCCA--------GAACGGACCCG---CGCCCGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCTCCCAACCGCCGG---CGAGCGG-------------------GGCGAGTGCGCAGCAGC--------------------------------------------------------------AGC---AGCA---G---------------------------------------------------------------AATGC---GCCGCAGCAGCAGCAGCCACCAAGTGC---------------------CCAACAACAACATCCG---GGCTCCCAGCAGCA------------------GCAGCAG---------------------CAAAACGCAGTGCAGCAACAGCACTT---GCAGCAG---------CAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAAGGTG----GCAGACCGG------------------------CCCCA--------GAACGGACCAA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCGCCCAGCCGTCCG---CG----------------------------AATGCGCAGCAGC--------------------------------------------------------------AGT---TGCAGCAG---------------------------------GCTCAGG------------------------GATC---CCAGCAGCAACAGCAGCAGCCAGGATCGCAAC---------------------AGCCACAGCCA---AGTTCGCAGCAGCA---------------------GCAG---------------------CAGAATGTGGTG------------------------------CAGCAACAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCCAGGAT.........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droBip1

CAAGGTG----GCAGACCGG------------------------CCCCA--------GAACGGACCCA---CACCCGCATCCCAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAGATG-CCCGCCCAGCCGTCCG---CG----------------------------AATGCGCAGCAGC--------------------------------------------------------------AGC---TGCAGCAG---------------------------------GCTCAGG------------------------GATC---CCAGCAGCAACAGCAGCAGCCAGGATCGCAAC---------------------AGCCACAGCCA---AGCTCGCAGCAGCA---------------------------------------GCA---GCAGAATGTGGCGCAG------------------------------CAACAGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAAAGTG----GCGGACAGAGGAGGA------------CCCGGAGCCCA--------GAACGGCCCCA---CGCCGACCACACAATCAGGTAATAATGGTTCACTACTCCTAGCC--CCTA----G--------------------------TCAAATG-CCCCCCCAACCGCC-G---CCAGCGG------------TGGTCGTGGCCAATGCCCAGCAGC--------------------------------------------------------------AGC---AGCAACAG------------------------------------------------CAGCAGCAGCAGCAGAAC------------------------------GT---------------------GCAGCAGCAGCAGCAG---AATGTGCCACAGCA------------------GCAGCAGCA---------------------GCAGGCACCGCAACAGA---ATCC---C------CAGCAGCAACAGCAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................GCCCAGCAGC--------------------------------------------------------------AGC---AGCAAC............................................................................................................................................................................................................................................................	19	18	0.11	2	0	0	0	0	2	0	0	0	0	0
............................................................................................................................................................................................................................GC--------------------------------------------------------------AGC---AGCAACAG------------------------------------------------CAGCAGCAGCA...............................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAGG-TGT---GGGAGTCGG------------------------CCACACCGATGTCGGACGGGCCAT---CGCCCTC----------------------------------------------------------------------------------------------------------------------------------GCAGGTGCAGGTGC--------------------------------------------------------------AAC---AGCAACAGCAGGCCCTGCCCCTAGGCCAGCAGCAGCAGCAGGCCATGG---------------------------CCCAGCAGCAGCAACAGCAGCAGCAGCAGTCG---------------CTCGTCCAGCAACAGCCACTA---CAGGTCC---------------------------------------AGCAGCAGCA---GCAGCAGGTGCCACAGCAGCAGGTCCAGCAGCAGCAGCAGGTCCAGCAGCAGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGGTCCAGCA.......................	18	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGTCG---------------CTCGTCCA................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................AGTCG---------------CTCGTCCAGCAACA..........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGGCCATG...................................................................................................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0

droWil2

CAAAGTA----GCCGATCGCAGCGGACACAGCGGCAATACTGGCATCCA--------GAATGGCCCCA---CGCCGGCAACACAATCAGGTAATAATGGTTCACTACTCCTAGCT--AATA----G--------------------------TCAAATG-CCCTCCCAACCGCCTA---CGGGCAACAATCTTGCCGGTAATC-CGAACAATGTGCAACAAC--------------------------------------AGCAGC------------------AACAACAGCAACAA---------------------------------------------------------------AAT------------------------------GC---------------------ACAGCAACAACACCCA---TCGTCGGCACAGCA------------------GCCGCAACA------------TCA---GCCAAGTGTTCCCCAG---------------------------CCAGCGCCGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................................................................................ATGTGCAACAAC--------------------------------------AGCAGC------------------AACA....................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0
........................................................................................................................................................................................................................AACAAC--------------------------------------AGCAGC------------------AACAACAGC...............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0

droVir3

CAGGCGG----GCATACTTA------------------------GTCCG--------GGACCA----G---CGGC----------------------AGCGCATCACCACGAGGC--CA---GCAGCTCGGCGACTGGTCGCTCCTCGCGCGCCGAACG-CGATCATCACCACC-A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---CAGCAGCACCAACA------------------GCACCAACAGCAGCAGCAGCAGCA---GCAACAGCAGCGGGAACAGCAGCGCGA---GCAGCAGCAGCAGGCACAGCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------GCACCAACAGCAGCAGCA..............................................................	21	4	2.75	11	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................GGTCGCTCCTCGCGCGCCGAACG-CGATCATC............................................................................................................................................................................................................................................................................................................................................................................................	31	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------GCACCAACAGCAGCAGCA..............................................................	22	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAACAGCAGCGCGA---GCA....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGAACAGCAGCGCGA---GCAGC..................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ACCACGAGGC--CA---GCAGCTCGGCGACTG...........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................A---GCAGCTCGGCGACTGGTCGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGAACAGCAGCGCGA---GC.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GCAGCTCGGCGACTGGTCGC......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAGCAGCGGGAACA...................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACAGCAGCGCGA---GCAGCAGC...............	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............ATACTTA------------------------GTCCG--------GGACCA----G---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................GCTCGGCGACTGGTCGCTCCTCGCG..............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCACCACC-A---TCAA--------------------------------CAGCAGC--------------------------------------------------AC..................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGA---GCAGCAGCAGCAGGC........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAA---CAGCAGCACC......................................................................................................	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------GCACCAACAGCAGCAGC...............................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCGGGAACAGC.................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------GCACCAACAGCAGCAGC...............................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA------------------GCACCAACAGCAGCA.................................................................	20	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAA............................................................................................................................	19	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACAGCA.......................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACAGCA.......................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------C..............................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------GCACCAACAGCAGCAGCAG.............................................................	20	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAGCAACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAA............................................................................................................................	28	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------------------GCACCAACAGCAGCAGCAT.............................................................	22	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCACCAACAGCAGCAGCA..............................................................	20	17	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................C-A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAAC...........................................................................................................................................................................................................................................................................	22	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCAACAGCAGCAGCAGC............................................................	20	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAAC...........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGCAGCAGCAGCAGCA---.....................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................CAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACA..........................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AGCAACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CA.............................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAAC.....................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACA..........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGC--------------------------------------------------AGCAGCAACAGCAAC---..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAGCAGCAGCAGCA...........................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCA---GCAACAG..............................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCA.............................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................C-A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCA.............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAAC...........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCA---GCAACAGCA............................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA---GCAACAGC.............................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGCAGCAGCAGC............................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAAC.....................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CA.............................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAGCA---.....................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................A---TCAA--------------------------------CAGCAGC--------------------------------------------------AGCAGC..............................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCA---GCAACA...............................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---CAGCAGC.........................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCA---GCAA.................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---CAGCA...........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AG---------------------------------------------------------------CAA---------------------------------------------------------CAACAGCAACAA---CAGCAGC.........................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------------------CAACAGCAACAA---CAGCAGC.........................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CAA--------------------------------CAGCAGC--------------------------------------------------AGCAGCAACAGCAAC---A.................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCACCAACAGCAGCAGCAGCAT..........................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCA---GCAACAGC.............................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CAA---------------------------------------------------------CAACAGCAACAA---CAGCA...........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CAGCAACAGCAAC---AACAACAG---------------------------------------------------------------CAA---------------------------------------------------------CAAC...........................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGC--------------------------------------------------AGCAGCAACAGCAAC---AACAAC............................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................CAGCAGC--------------------------------------------------AGCAGCAACAGCAAC---AACA..............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CAGC--------------------------------------------------AGCAGCAACAGCAAC---AA................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAGCA---GCAAC................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGCAGC--------------------------------------------------AGCAGCAACAGCA.......................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GCAACAGCAGCG.........................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---GCAAC................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAAGGAG----CGTGCCGTG------------------------CCACA--------GAGCGCAAT-T---TGTCCGGGCTGCAATAAGATATTTCTGGGTCGTCGCTTGCAGCGTCATTAC---G--------------------------TCAAGTATCCCGACCATATGCCC---------AG-------------------TGTGATCGCTCATCAGGAACAGCA-----------------------AC------ATCAGCAGCAGCAGCAGCAA---------------------------------------------------GA---------------------------------------------------------------------------------------------GCAACAG---CAACAGCAACAGCA------------------GCAGCAACAGCAGCAGCAGCAGCA---GCAGCA---GCAGCAGCAGCGGCAGCA---GCAACAGCTGCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................ATATGCCC---------AG-------------------TGTGATCGCT.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................ATCGCTCATCAGGAACAGCA-----------------------AC------ATC.............................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..AGGAG----CGTGCCGTG------------------------CCACA--------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAGCA---G....................................................	21	20	0.20	4	4	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCAACAGCTGCAGCAGCAGCAGC	26	6	0.17	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GCAGCA---GCAGCAGCA...................................	24	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA------------------GCAGCAACAGCAGC..................................................................	20	20	0.10	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAGCAGCAGCGGC..............................	20	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA---------------------------------------------------GA---------------------------------------------------------------------------------------------GCAAC.....................................................................................................................	21	16	0.06	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCTGCAGCAGCAGCAGC	22	18	0.06	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CAA---------------------------------------------------GA---------------------------------------------------------------------------------------------GCAACAG---CAACAGCA........................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCA------------------GCAGC...........................................................................	18	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGCAACAGCAGCAGCAGC............................................................	22	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA------------------GCAGCAACAGCAGCA.................................................................	21	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---GCAGCA---GCAGCAGCAGCGGC..............................	22	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................AGCA-----------------------AC------ATCAGCAGCAGCAGCAG...............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................AGCAGCAGCAGCAA---------------------------------------------------GA---------------------------------------------------------------------------------------------GCA.......................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGCAACAGCAGCAGC...............................................................	19	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCAGCA---GCAACA.................	19	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................AGCA-----------------------AC------ATCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCAGCA---GCAACAGC...............	20	20	0.05	1	1	0	0	0	0	0

droGri2

GAAGGTC-GTCGCGGATCGGG---GA------------ACGGGCGCCCA--------AAATGGTCCGA---CGCCAGCAACACAATCAGGTAATAATGGTTCACTACTACTAGCT--AATA----G--------------------------TCAAATG-CCCGCACAGCAGCA-------------------------------------------GCAGC------AGGCAAGTCAGAGTCAAAGTCAAAACAGCAACAGC---------------------AGC---AGCA---G------------------------CAA------CAACAGTAATGTTGT--------------CAATGCACAGCAGCAGCAACAGCAGCAGCAACTTGCACAACAGCAGCAGCATAGCGCACAGCAGCAACTT---------GCACAGCAACAACAACAGCA---------------------------GCAGCA---ACA------ACAACAGCAGCAGCAACA---GCAGCAGCAGCAGCAGCAACAGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA------ACAACAGCAGCAGCAACA---GCA....................	24	20	0.05	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC............................................................................................................................................................	23	20	0.05	1	1	0

dya_1008

3R:11243438-11243588 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads