ID:

dya-mir-6-3

 Coordinate:

2R:13624489-13624568 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.3 -33.4 -33.4

Flybase annnotation

pre_miRNA [Dyak\mir-6-3-RM]; utr3 [utr3_minus_3613]; miRNA [Dyak\miR-6-3-RA]

No Repeatable elements found

mature

  1. dya-mir-6-1  2R:13624252-13624273 +
  2. dya-mir-6-2  2R:13624389-13624410 +
  3. dya-mir-6-3  2R:13624541-13624562 +
star

Sense Strand Reads

CATTTGTGGCCCGCATTTTTGTCACCTCAGTGCGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTCGAAACTCTCTCAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGACATGAAATAGAAATGCTT

*******************************************.(((((.((((.((((((((((((((((((.((((((((...((.......))...)))))))))))))))))))))))))).)))))))))....***************************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 V046

embryo

 M043

female body

 V120

male body		 M026

head

 V058

head

 SRR1275488

Male larvae
......................................................................................................TATCACAGTGGCTGTTCTTTTT........................................................ 22 0 3 88528.67 265586 265335 5 234 12 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTT......................................................... 21 0 3 15870.00 47610 47538 1 63 8 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTT....................................................... 23 0 1 10507.00 10507 10505 0 2 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTT........................................................ 22 1 3 4376.67 13130 13130 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTC........................................................ 22 1 3 2566.67 7700 7700 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 2030.33 6091 6091 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 1730.67 5192 5192 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTT.......................................................... 20 0 3 1006.67 3020 3003 1 15 1 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGTA................................................................................................... 23 0 1 878.00 878 776 102 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTT......................................................... 21 1 3 762.00 2286 2286 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 557.00 557 557 0 0 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 518.33 1555 1555 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 453.33 1360 1360 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTT......................................................... 21 1 3 364.00 1092 1092 0 0 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 332.00 996 995 0 1 0 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTT........................................................ 22 1 3 312.33 937 935 0 2 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 292.67 878 878 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTC......................................................... 21 1 3 276.00 828 828 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 233.00 233 233 0 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 220.00 220 220 0 0 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 195.00 585 585 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTT........................................................ 22 1 3 178.00 534 534 0 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGT.................................................................................................... 22 0 1 177.00 177 159 17 1 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTT........................................................ 22 1 3 166.33 499 498 1 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTC....................................................... 23 1 3 165.00 495 494 0 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTC.......................................................... 20 1 3 138.33 415 415 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTT........................................................ 22 1 3 136.67 410 402 8 0 0 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTT........................................................ 22 1 3 132.00 396 394 2 0 0 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTTT........................................................ 22 1 3 130.33 391 391 0 0 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTT......................................................... 21 1 3 117.67 353 353 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 117.00 117 117 0 0 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTT........................................................ 22 1 3 105.00 315 314 0 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTT...................................................... 24 1 2 104.50 209 209 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTC........................................................ 22 2 3 103.67 311 311 0 0 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTT........................................................ 23 1 3 101.67 305 305 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTTT........................................................ 22 1 3 99.67 299 299 0 0 0 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTTT........................................................ 22 1 3 99.00 297 297 0 0 0 0 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 96.33 289 289 0 0 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTT........................................................ 21 0 3 92.00 276 267 0 9 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTA....................................................... 23 1 3 90.33 271 269 0 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTTT........................................................ 22 1 3 84.33 253 253 0 0 0 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTTT........................................................ 22 1 3 80.33 241 240 1 0 0 0 0 0
......................................................................................................TACTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 79.67 239 239 0 0 0 0 0 0
......................................................................................................TATCAGAGTGGCTGTTCTTTTT........................................................ 22 1 3 77.67 233 233 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGATCTTTTT........................................................ 22 1 3 75.67 227 227 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTT........................................................ 22 1 3 70.67 212 212 0 0 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTTT........................................................ 22 1 3 69.00 207 190 17 0 0 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTT........................................................ 22 1 3 67.00 201 186 15 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 64.33 193 193 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 62.67 188 188 0 0 0 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTT........................................................ 22 1 3 62.00 186 180 6 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTGT........................................................ 22 1 3 62.00 186 186 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTT........................................................... 19 0 3 62.00 186 184 0 2 0 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTTT........................................................ 22 1 3 60.00 180 180 0 0 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 59.67 179 179 0 0 0 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTT........................................................ 22 1 3 57.33 172 172 0 0 0 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTTT........................................................ 22 1 3 56.00 168 168 0 0 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 54.33 163 163 0 0 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 52.00 52 52 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTTT........................................................ 22 1 3 49.33 148 145 3 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGATG..................................................................................................... 21 0 1 49.00 49 40 8 0 0 1 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTT........................................................ 22 1 3 48.67 146 146 0 0 0 0 0 0
..........................................................................................................ACAGTGGCTGTTCTTTTT........................................................ 18 0 3 47.00 141 140 0 1 0 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTTT....................................................... 23 1 1 47.00 47 47 0 0 0 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTT......................................................... 21 1 3 44.67 134 134 0 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGATGT.................................................................................................... 22 1 1 43.00 43 43 0 0 0 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTTT........................................................ 22 1 3 43.00 129 129 0 0 0 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTT........................................................ 22 1 3 42.00 126 119 0 7 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTT.......................................................... 20 1 3 41.67 125 125 0 0 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 41.00 41 41 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTT........................................................ 22 1 3 37.33 112 112 0 0 0 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTT........................................................ 22 1 3 37.00 111 102 0 9 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTTT........................................................ 22 1 3 36.00 108 108 0 0 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTT......................................................... 21 1 3 35.33 106 106 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGTT........................................................ 22 1 3 35.33 106 106 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTT......................................................... 21 1 3 35.33 106 106 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTTTT....................................................... 23 1 1 34.00 34 34 0 0 0 0 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTTT........................................................ 22 1 3 33.33 100 97 3 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGC.................................................................................................... 22 1 1 33.00 33 33 0 0 0 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTTT........................................................ 22 1 3 32.00 96 94 2 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTT......................................................... 21 1 3 31.67 95 94 1 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTA........................................................ 22 1 3 31.33 94 94 0 0 0 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTTT........................................................ 22 1 3 31.33 94 94 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTTT........................................................ 22 1 3 30.00 90 88 2 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 29.67 89 89 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTTTT....................................................... 23 1 1 29.00 29 29 0 0 0 0 0 0
......................................................................................................TTTTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 28.00 84 84 0 0 0 0 0 0
......................................................................................................TATTACAGCGGCTGTTCTTTTT........................................................ 22 2 3 28.00 84 84 0 0 0 0 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTTT........................................................ 22 1 3 27.67 83 80 3 0 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 27.00 27 27 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTT.......................................................... 20 1 3 27.00 81 81 0 0 0 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTT......................................................... 21 1 3 26.67 80 80 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCGTTTT........................................................ 22 1 3 26.33 79 79 0 0 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTTT....................................................... 23 1 1 26.00 26 26 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTTT........................................................ 22 1 3 25.67 77 66 9 0 1 1 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTT......................................................... 21 1 3 25.00 75 75 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTT......................................................... 21 1 3 24.00 72 72 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTTT....................................................... 23 1 1 24.00 24 24 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTT......................................................... 21 1 3 22.67 68 68 0 0 0 0 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTT......................................................... 21 2 3 22.67 68 68 0 0 0 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTT........................................................ 20 0 3 22.33 67 67 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGCTCTTTTT........................................................ 22 2 3 22.33 67 67 0 0 0 0 0 0
.......................................................AGAAGGGAACGGTTGCTGATGAT...................................................................................................... 23 0 1 22.00 22 19 2 0 0 0 1 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTTT..................................................... 25 1 1 22.00 22 22 0 0 0 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTT......................................................... 21 1 3 21.67 65 65 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTACTTTTT........................................................ 22 1 3 21.33 64 64 0 0 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 21.00 63 63 0 0 0 0 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTT........................................................ 19 0 3 21.00 63 62 0 1 0 0 0 0
......................................................................................................TAGCACAGTGGCTGTTCTTTTT........................................................ 22 1 3 20.33 61 61 0 0 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTT......................................................... 21 1 3 20.00 60 60 0 0 0 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTTT....................................................... 23 1 1 20.00 20 20 0 0 0 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTT......................................................... 21 1 3 19.33 58 58 0 0 0 0 0 0
..........................................................AGCGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 19.00 19 19 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGATCTTTT......................................................... 21 1 3 19.00 57 57 0 0 0 0 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTTT........................................................ 22 1 3 19.00 57 57 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTTT....................................................... 23 1 1 18.00 18 16 2 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTTT....................................................... 23 1 1 18.00 18 18 0 0 0 0 0 0
......................................................................................................TATCACAGTCGCTGTTCTTTTTT....................................................... 23 1 1 18.00 18 18 0 0 0 0 0 0
..........................................................AGGTAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 18.00 18 18 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTGTTT........................................................ 22 1 3 17.67 53 53 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTG......................................................... 21 1 3 16.67 50 50 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTATTTTT........................................................ 22 1 3 16.67 50 50 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTATT........................................................ 22 1 3 16.67 50 50 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCCTTT......................................................... 21 1 3 16.00 48 48 0 0 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTT......................................................... 22 1 3 16.00 48 47 0 1 0 0 0 0
.....................................................................................................CGATCACAGTGGCTGTTCTTTTT........................................................ 23 2 3 15.67 47 47 0 0 0 0 0 0
.........................................................AAGGGAACGGTTGCTGATGATGT.................................................................................................... 23 0 1 15.00 15 13 2 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCT........................................................ 22 1 3 15.00 45 45 0 0 0 0 0 0
......................................................................................................TATCAGAGTGGCTGTTCTTTT......................................................... 21 1 3 14.67 44 44 0 0 0 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTT......................................................... 21 1 3 14.33 43 41 2 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGATG..................................................................................................... 21 1 1 14.00 14 14 0 0 0 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 14.00 14 14 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTTC...................................................... 24 1 1 13.00 13 13 0 0 0 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTT......................................................... 21 1 3 13.00 39 34 5 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGATGC.................................................................................................... 22 2 1 13.00 13 13 0 0 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTT......................................................... 20 0 3 12.67 38 36 0 2 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTT......................................................... 21 1 3 12.67 38 34 4 0 0 0 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTTT........................................................ 22 1 3 12.67 38 38 0 0 0 0 0 0
......................................................................................................TATCTCAGTGGCTGTTCTTTTTT....................................................... 23 1 1 12.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTTT......................................................... 21 1 3 12.00 36 36 0 0 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTTT....................................................... 23 1 1 12.00 12 12 0 0 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTTT....................................................... 22 0 1 12.00 12 11 0 1 0 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTT......................................................... 21 1 3 11.67 35 35 0 0 0 0 0 0
......................................................................................................TATCGCAGTGGCTGTTCTTTT......................................................... 21 1 3 11.33 34 34 0 0 0 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTTT....................................................... 23 1 1 11.00 11 11 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTTTT....................................................... 23 3 1 11.00 11 0 11 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTCCTTTTTT....................................................... 23 1 1 11.00 11 11 0 0 0 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTT......................................................... 21 1 3 10.33 31 31 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTT........................................................ 22 1 3 10.00 30 28 2 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTTTT....................................................... 23 1 1 10.00 10 10 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTTT....................................................... 23 1 1 10.00 10 10 0 0 0 0 0 0
.......................................................................................................AGCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 10.00 30 30 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTTTT....................................................... 23 1 1 10.00 10 10 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCT......................................................... 21 1 3 9.67 29 29 0 0 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 9.67 29 29 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTC......................................................... 21 2 3 9.67 29 29 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTC......................................................... 21 2 3 9.33 28 28 0 0 0 0 0 0
....................................................................................................TCTATCACAGTGGCTGTTCTTTTT........................................................ 24 1 3 9.33 28 28 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCATTTT........................................................ 22 1 3 9.33 28 28 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCCGTTCTTTT......................................................... 21 1 3 9.33 28 28 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTCT....................................................... 23 1 1 9.00 9 9 0 0 0 0 0 0
......................................................................................................TATGACAGTGGCTGTTCTTTTT........................................................ 22 1 3 9.00 27 27 0 0 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTTT....................................................... 24 1 1 9.00 9 9 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTTTT....................................................... 23 1 1 9.00 9 9 0 0 0 0 0 0
.........................................................................................................CACAGTGGCTGTTCTTTTTT....................................................... 20 0 1 9.00 9 9 0 0 0 0 0 0
.......................................................AGAAGGGAACGGTTGCTGATGA....................................................................................................... 22 0 1 9.00 9 7 2 0 0 0 0 0
.......................................................AGAAGGGAACGGTTGCTGATG........................................................................................................ 21 0 1 9.00 9 7 2 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTTAA...................................................... 24 1 1 9.00 9 9 0 0 0 0 0 0
......................................................................................................TATAACAGTGGCTGTTCTTTTT........................................................ 22 1 3 8.67 26 26 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTCTT......................................................... 21 1 3 8.67 26 26 0 0 0 0 0 0
......................................................................................................TACTACAGTGGCTGTTCTTTT......................................................... 21 2 5 8.20 41 41 0 0 0 0 0 0
......................................................................................................TATCACAGTGACTGTTCTTTTTT....................................................... 23 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................GATCTATCACAGTGGCTGTTCTTTTT........................................................ 26 3 3 8.00 24 24 0 0 0 0 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTTTT....................................................... 23 2 1 8.00 8 8 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGATCTTTTTT....................................................... 23 1 1 8.00 8 8 0 0 0 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTTTC........................................................ 22 2 3 8.00 24 24 0 0 0 0 0 0
......................................................................................................TATCACACTGGCTGTTCTTTTTT....................................................... 23 1 1 8.00 8 8 0 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGA....................................................................................................... 19 0 1 8.00 8 7 1 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTATTT........................................................ 22 1 3 7.67 23 23 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTTTTT.......................................................... 20 1 3 7.67 23 22 1 0 0 0 0 0
......................................................................................................TATTTCAGTGGCTGTTCTTTTT........................................................ 22 2 4 7.50 30 30 0 0 0 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTT......................................................... 21 1 3 7.33 22 17 1 4 0 0 0 0
......................................................................................................TGCCACAGTGGCTGTTCTTTTT........................................................ 22 2 3 7.33 22 22 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCT............................................................ 18 0 3 7.33 22 21 0 1 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTC.......................................................... 20 2 3 7.00 21 21 0 0 0 0 0 0
..........................................................TGGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 7.00 7 7 0 0 0 0 0 0
......................................................................................................TACTACAGTGGCTGTTCTTTTTT....................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTTTTCTTTTC........................................................ 22 2 3 7.00 21 21 0 0 0 0 0 0
..........................................................................................................ACAGTGGCTGTTCTTTTTT....................................................... 19 0 1 7.00 7 7 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTC......................................................... 21 2 3 7.00 21 21 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 7.00 21 21 0 0 0 0 0 0
......................................................................................................TATCACTGTGGCTGTTCTTTTT........................................................ 22 1 3 6.67 20 20 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTTTC........................................................ 22 2 3 6.67 20 20 0 0 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 6.67 20 20 0 0 0 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTT......................................................... 21 1 3 6.67 20 20 0 0 0 0 0 0
......................................................................................................TATTACGGTGGCTGTTCTTTTT........................................................ 22 2 4 6.50 26 26 0 0 0 0 0 0
......................................................................................................TATTACAGCGGCTGTTCTTTT......................................................... 21 2 3 6.33 19 19 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCGTTT......................................................... 21 1 3 6.33 19 19 0 0 0 0 0 0
......................................................................................................TATCACAGTGGTTGTTCTTTT......................................................... 21 1 3 6.33 19 18 1 0 0 0 0 0
........................................................................................................TATCAGTGGCTGTTCTTTTT........................................................ 20 2 4 6.25 25 25 0 0 0 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTGTT....................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................TATCACAGTAGCTGTTCTTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................TAGCACAGTGGCTGTTCTTTT......................................................... 21 1 3 6.00 18 18 0 0 0 0 0 0
.........................................................AAGGGAACGGTTGCTGATGATGTA................................................................................................... 24 0 1 6.00 6 4 2 0 0 0 0 0
......................................................................................................TATCATAGTGGCTGTTCTTTTTT....................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0
..........................................................ATCGAACGGTTGCTGATGATGTA................................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................TTTCACAGTGGCTGTTCTTT.......................................................... 20 1 3 5.67 17 17 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTGTTTT......................................................... 21 1 3 5.67 17 17 0 0 0 0 0 0
......................................................................................................TACCACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 5.67 17 17 0 0 0 0 0 0
.....................................................................................................ATATCACAGTGGCTGTTCTTTT......................................................... 22 0 3 5.67 17 17 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTTG........................................................ 22 1 3 5.67 17 17 0 0 0 0 0 0
......................................................................................................TATCACAATGGCTGTTCTTTT......................................................... 21 1 3 5.67 17 17 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTTT...................................................... 24 2 2 5.50 11 11 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTT......................................................... 21 1 3 5.33 16 15 1 0 0 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTT......................................................... 21 1 3 5.33 16 16 0 0 0 0 0 0
......................................................................................................TTTTACAGTGGCTGTTCTTTT......................................................... 21 2 4 5.25 21 21 0 0 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTTTC........................................................ 22 2 3 5.00 15 15 0 0 0 0 0 0
......................................................................................................TATTACAGCGGCTGTTCTTTTTT....................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0
......................................................................................................TATCAGAGTGGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGGTTTTT........................................................ 22 3 5 5.00 25 0 25 0 0 0 0 0
......................................................................................................CATTACAGTGGCTGTTCTTTTT........................................................ 22 2 3 5.00 15 15 0 0 0 0 0 0
..........................................................AGGGAACGTTTGCTGATGATGTA................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................................TATCACAGAGGCTGTTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTATTCTTTTTT....................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................................TACCACAGCGGCTGTTCTTTTT........................................................ 22 2 3 5.00 15 15 0 0 0 0 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTT......................................................... 21 1 3 5.00 15 15 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGCTCTTTTC........................................................ 22 2 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................GATCACAGTGGCTGTTCTTT.......................................................... 20 1 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTA........................................................ 22 2 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTCTTTTTA....................................................... 23 2 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................TGTCACAGTGGCTGTTCTTTTTC....................................................... 23 2 3 4.67 14 14 0 0 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTC........................................................ 21 1 3 4.67 14 14 0 0 0 0 0 0
...................................................................................................ATCTATCACAGTGGCTGTTCTTTTT........................................................ 25 2 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................TATTACAGTCGCTGTTCTTTTT........................................................ 22 2 3 4.67 14 14 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTCTTTT......................................................... 21 1 3 4.33 13 10 1 0 0 1 0 1
......................................................................................................TATCTCAGTGGCTGTTCTTTTC........................................................ 22 2 3 4.33 13 13 0 0 0 0 0 0
......................................................................................................TATTACAGTTGCTGTTCTTTTT........................................................ 22 2 3 4.33 13 13 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGATCTTTTT........................................................ 22 2 3 4.33 13 13 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTCCTTTTT........................................................ 22 2 3 4.33 13 13 0 0 0 0 0 0
......................................................................................................TATCACAGTGCCTGTTCTTTTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
..........................................................AGCGAACGGTTGCTGATGATGT.................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................................ATAACAGTGGCTGTTCTTTTTT....................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTCTTTT...................................................... 24 2 2 4.00 8 8 0 0 0 0 0 0
..........................................................AAGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................................AGCACAGTGGCTGTTCTTTTTT....................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATCACAGTTGCTGTTCTTTTC........................................................ 22 2 3 4.00 12 12 0 0 0 0 0 0
...........................................................AGGAACGGTTGCTGATGATGTA................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
..........................................................AGGTAACGGTTGCTGATGATGT.................................................................................................... 22 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATTACAGTGGATGTTCTTTTT........................................................ 22 2 3 4.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGGGGCTGTTCTTTTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATCACAACGGCTGTTCTTTTT........................................................ 22 2 3 4.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGGTTTTTTT....................................................... 23 3 1 4.00 4 0 4 0 0 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTT......................................................... 21 1 3 4.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTTTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
.....................................................................................................CGATCACAGTGGCTGTTCTTTT......................................................... 22 2 3 4.00 12 12 0 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGAT...................................................................................................... 20 0 1 4.00 4 4 0 0 0 0 0 0
........................................................................................................TCACAGTGGCTGTTCTTTTTT....................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0
..........................................................AGGGAACGGTTGCTGATGATGTT................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATCACAGCGGCTGTTCTTT.......................................................... 20 1 3 4.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCAGTTCTTTT......................................................... 21 1 3 4.00 12 12 0 0 0 0 0 0
.......................................................ATAAGGGAACGGTTGCTGATGAT...................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
..........................................................ATGTAACGGTTGCTGATGATGTA................................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGT......................................................... 21 1 3 4.00 12 12 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTTCTT....................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................................TAACACAGTGGCTGTTCTTTT......................................................... 21 1 3 3.67 11 11 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTTTTCTTTTT........................................................ 22 2 3 3.67 11 11 0 0 0 0 0 0
.......................................................................................................ATAACAGTGGCTGTTCTTTTT........................................................ 21 1 3 3.67 11 11 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTGTTTTT........................................................ 22 2 3 3.67 11 0 11 0 0 0 0 0
......................................................................................................CATCACAGTGGCTGTTCTTT.......................................................... 20 1 3 3.67 11 11 0 0 0 0 0 0
......................................................................................................TATCACAGTGTCTGTTCTTTT......................................................... 21 1 3 3.67 11 11 0 0 0 0 0 0
.......................................................................................................TTCACAGTGGCTGTTCTTTTT........................................................ 21 1 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TATCACGGTGGCTGTTCTTTTC........................................................ 22 2 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TATCACCGTGGCTGTTCTTTTT........................................................ 22 1 3 3.33 10 10 0 0 0 0 0 0
.....................................................................................................CTATCACAGTGGCTGTTCTTTTC........................................................ 23 2 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGCTCTTTT......................................................... 21 2 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TGTTACAGTGGCTGTTCTTTTC........................................................ 22 3 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTACTTTT......................................................... 21 1 3 3.33 10 10 0 0 0 0 0 0
......................................................................................................TATTACACTGGCTGTTCTTTTT........................................................ 22 2 4 3.25 13 13 0 0 0 0 0 0
......................................................................................................TATCACAGTGGGTGTTCTTTTTT....................................................... 23 1 1 3.00 3 2 1 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGTTTTTTTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTTGTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................AGAAGGGAACGGTTGCTGATGAC...................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................ATCACAGTGGCTGTTCTTTTTTT...................................................... 23 1 2 3.00 6 6 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTGTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATTACAGTGGCTGCTCTTTTTT....................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTCTATT......................................................... 21 1 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................AATCACAGTGGCTGTTCTTT.......................................................... 20 1 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTCTTCTTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
..........................................................ACGGAACGGTTGCTGATGATGTA................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGTTATTTTTT....................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................TATCACAGTGGCTGGTTTTTTTTTT..................................................... 25 3 1 3.00 3 0 3 0 0 0 0 0
..........................................................ACGGAACGGTTGCTGATGATGT.................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................TGTCTCAGTGGCTGTTCTTTTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
..........................................................ATGGAACGGTTGCTGATGA....................................................................................................... 19 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTCTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATCACATTGGCTGTTCTTTTC........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATCACAGTGGATGTTCTTT.......................................................... 20 1 3 3.00 9 8 0 0 1 0 0 0
......................................................................................................TATCACAGTGGCTGTGCTTTTC........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TGTCACAGTTGCTGTTCTTTTT........................................................ 22 2 3 3.00 9 9 0 0 0 0 0 0
......................................................................................................TATTGCAGTGGCTGTTCTTTTT........................................................ 22 2 4 3.00 12 12 0 0 0 0 0 0

Anti-sense strand reads

GTAAACACCGGGCGTAAAAACAGTGGAGTCACGCTTTTAACTTTTAACAAGTTTTTCTTCCCTTGCCAACGACTACTACATCAAGCTTTGAGAGAGTTAAATATAGTGTCACCGACAAGAAAAAATAAACCGTTAGCTAGATGTAAGTCACCACACGGTCCTGTACTTTATCTTTACGAA

*****************************************.(((((.((((.((((((((((((((((((.((((((((...((.......))...)))))))))))))))))))))))))).)))))))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total V052

head

 V058

head

 M026

head
...................................................................................................................................................TCACCACACTGTCCTGTCATT............ 21 3 3 0.33 1 1 0 0
...................................................................................................................................................TCACCACACGGTCCTGTGTTA............ 21 3 3 0.33 1 1 0 0
...................................................................................................................................................TCACCACACGGTCCTGTTATA............ 21 3 4 0.25 1 0 1 0
....................................................................................................................................................CACCACACGGTCCTGTTATA............ 20 3 8 0.13 1 1 0 0
................................................................................TCAAGCTGTGAGTGAGTTTA................................................................................ 20 3 9 0.11 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2R:13624439-13624618 + dya-mir-6-3 Known_mirbase CATTTG----------TGG---CCCGCA---T---------------------TTTTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCT----CAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGAC----------------ATGAAATAG----AAA-TGCTT
droEre2 scaffold_4845:9748425-9748604 - der-mir-6-3 Known_mirbase CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTTGGTG--CGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTAC----------------ATGAAATAG----AAA-TATTT
droSec2 scaffold_1:13062904-13063083 - dse-mir-6-3 Known_mirbase CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTT
droSim2 2r:16195443-16195622 - dsi-mir-6-3 Known_mirbase CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTT
dm3 chr2R:15548171-15548350 - dme-mir-6-3 Known_mirbase CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTT
droEug1 scf7180000409474:2397499-2397673 + CATCTG----------TGG---CATGCA---T---------------------TTGTG---TCACCTCAATG--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGAC----------------ATGAAATTG----AAA------
droBia1 scf7180000302143:3059089-3059269 - CATCTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCA----CAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGAC----------------ATGAAATGG----AAAACATTC
droTak1 scf7180000415384:84701-84887 + CATCTG----------TGG---CATGCA---T---------------------TTGTG---TCAACTGAATG--TGAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGAC----------------ATGAAATAG----AAA-TTATT
droEle1 scf7180000491201:2013240-2013428 - CATACA----------GGG---AACGGA---T---------------------TTGTG---TCACCTCAATT--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAATAA-------ATAGCGCACATAAAACAG----AAA-ATATT
droRho1 scf7180000780066:74321-74501 + CATCCA----------GGA---AACGCA---T---------------------TTGTG---TCACCTCAATT--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGAC----------------ACGAAATTG----AAAATATTC
droFic1 scf7180000454039:847310-847490 - CATCTG----------CGG---CACGCA---T---------------------TCGTG---TCTCCTCAATG--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGAC----------------ACGAAATAG----AAAATATCC
droKik1 scf7180000302679:88616-88796 - CATCAG----------CGC---GGCCTC---A---------------------GTGTA---TCATCTCTGTT--GGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGAC----------------ACGAAATTG----AAA-ATATA
droAna3 scaffold_13266:9732070-9732214 + dan-mir-6-3 Known_mirbase CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACGTTGGTGGACAG-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCA----TCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC------------------------------------------------------
droBip1 scf7180000396427:875015-875190 + CATCTG----------TGG---CACGAA---T---------------------TTGTGGCATCACCTTGGTGG-ACA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCC----TCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGAT----------------A----ATAT----AGA-TACCT
dp5 3:12676794-12676922 - dps-mir-6-3 Known_mirbase CATCTC----------CGCCGCCGCGCA---T---------------------TCGC-------------------C-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATC-------------------------------------------------------------
droPer2 scaffold_2:8906750-8906919 + dpe-mir-6-2 Known_mirbase CATCTC----------CGCCGCCGCGCA---T---------------------T--------CACC------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTT---------TCGAAATATAAAAAAA-AAGTG
droWil2 scf2_1100000004514:1650984-1651122 - dwi-mir-6-3 Known_mirbase TTTTTAGATTTCTCTGTTT---TACCGT---T---------------------TTCTT---TCATTT--------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACA--ATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACA---------------------------------------------------------
droVir3 scaffold_12875:4112887-4113048 + dvi-mir-6-3 Known_mirbase CAGCCGAA---------AG---TAC-TTTTA-TTATTAACTAACTTGTGCAATTTG-T---TCACTTTAAT----GA-------CGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTA----CTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC----------------------------------------------------------
droMoj3 scaffold_6496:20935939-20936112 - dmo-mir-6-3 Known_mirbase CTGTGAAATAAATCTTGAA---TA--------GTGTTATCTTAAGTATGTGATTTGTT---CAGTTTCAAAT--CG--------TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTA----ATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG----------------------------------------------------
droGri2 scaffold_15112:2107904-2108062 - dgr-mir-6-3 Known_mirbase CAGTG-----------TTT---TATTCT----ATTTTATTTTACGTGTGT--TTTTTT---------TTGTTAACTC-------CACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAA----TATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTT-------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
CATTTG----------TGG---CCCGCA---T---------------------TTTTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCT----CAATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATTCAGTGGTGTGCCAGGAC----------------ATGAAATAG----AAA-TGCTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22388528.672655860234265335500120000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21315870.00476100634753810080000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23110507.0010507021050500000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2232566.67770000770000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031006.673020015300310010000
...........................................................................................................AGGGAACGGTTGCTGATGATGTA.............................................................................................................................231878.00878007761020000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213276.008280082800000000
...........................................................................................................AGGGAACGGTTGCTGATGATGT..............................................................................................................................221177.0017701159170000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233165.004950149400000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203138.334150041500000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242104.502090020900000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.002760926700000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23390.332710226900000000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19362.001860218400000000
...........................................................................................................AGGGAACGGTTGCTGATGATG...............................................................................................................................21149.0049104080000000
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.001410114000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGC..............................................................................................................................22133.0033003300000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22331.3394009400000000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20322.3367006700000000
........................................................................................................AGAAGGGAACGGTTGCTGATGAT................................................................................................................................23122.0022001920100000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19321.0063016200000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21316.6750005000000000
..........................................................................................................AAGGGAACGGTTGCTGATGATGT..............................................................................................................................23115.0015001320000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................24113.0013001300000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20312.6738023600000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22112.0012011100000000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................2019.00900900000000
........................................................................................................AGAAGGGAACGGTTGCTGATGA.................................................................................................................................2219.00900720000000
........................................................................................................AGAAGGGAACGGTTGCTGATG..................................................................................................................................2119.00900720000000
...........................................................................................................AGGGAACGGTTGCTGATGA.................................................................................................................................1918.00800710000000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.3322012100000000
................................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1917.00700700000000
..........................................................................................................AAGGGAACGGTTGCTGATGATGTA.............................................................................................................................2416.00600420000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2235.6717001700000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2235.6717001700000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2134.6714001400000000
...........................................................................................................AGGGAACGGTTGCTGATGAT................................................................................................................................2014.00400400000000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTT............................................................................2114.00400400000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTT.............................................................................................................................2314.00400400000000
........................................................................................................AGAAGGGAACGGTTGCTGATGAC................................................................................................................................2313.00300300000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT...........................................................................2323.00600600000000
droEre2
CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTTGGTG--CGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTGCGTTCAGTGGTTTGCCAGTAC----------------ATGAAATAG----AAA-TATTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22310965.6732897490027970056160
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2132527.677583713686301510
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2311065.00106535103000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223198.00594958500000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203195.675877550501240
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213131.673953702500000
...........................................................................................................AGGGAACGGTGGCTGATGATGTA.............................................................................................................................23144.004488028000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21326.007817700000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23319.005715600000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23318.6756163800020
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20317.3352411100000
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20316.334904801000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19314.3343103001110
...........................................................................................................AGGGAACGGTGGCTGATGATGT..............................................................................................................................22111.00113503000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.673223900000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2429.001801701000
...........................................................................................................AGGGAACGGTGGCTGATGATG...............................................................................................................................2116.0061203000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.331661000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2215.0054100000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2414.0042200000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.3374300000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1932.0061500000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.0066000000
...........................................................................................................AGGGAACGGTGGCTGATGATGC..............................................................................................................................2212.0020200000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2431.6750500000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.3342200000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.3341300000
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1831.3340400000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.0030300000
............................................................................................................GGGAACGGTGGCTGATGATGTA.............................................................................................................................2211.0011000000
..................................................................................................................................GTTC-GAAACTCTCA----CAATTTA...................................................................................................2111.0011000000
......................................................................................................................................................AATTTATATCACAGTGGCTGTTCTTTTT.............................................................................2811.0010100000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.0030300000
...........................................................................................................AGGGAACGGTGGCTGATGATGTAT............................................................................................................................2411.0010100000
..............................................................................................................GAACGGTGGCTGATGATG...............................................................................................................................1811.0010001000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1831.0032100000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................2211.0010100000
...........................................................................................................AGGGAACGGTGGCTGATGA.................................................................................................................................1911.0010001000
...........................................................................................................AGGGAACGGTGGCTGATGATGTAG............................................................................................................................2411.0010001000
............................................................................................................GGGAACGGTGGCTGATGATGT..............................................................................................................................2111.0011000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.0010100000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................2311.0010100000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2330.6720200000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2430.6722000000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.6720200000
droSec2
CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22327140.338142117131478922772
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138065.33241962271023821138
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031417.004251233419035
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................231502.00502614941
...........................................................................................................AGGGAACGGTTGCTGATGATGTA.............................................................................................................................231262.002621422424
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193259.677793075719
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233126.33379203689
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................183112.00336003342
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21392.0027614701281
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18367.33202101965
...........................................................................................................AGGGAACGGTTGCTGATGATGT..............................................................................................................................22135.003500350
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22332.339720941
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22329.008710851
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20319.6759100481
...........................................................................................................AGGGAACGGTTGCTGATGATG...............................................................................................................................21115.001500150
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24314.004200411
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20311.3334230110
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23311.003310320
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2237.332220200
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2427.001400140
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.331920170
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1935.331620140
............................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2134.331300130
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2414.0040040
..........................................................................................................AAGGGAACGGTTGCTGATGATGTA.............................................................................................................................2414.0040040
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2214.0041030
...........................................................................................................AGGGAACGGTTGCTGATGAT................................................................................................................................2014.0040130
...........................................................................................................AGGGAACGGTTGCTGATGATGTAA............................................................................................................................2414.0040040
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2133.671100110
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2333.331000100
...........................................................................................................AGGGAACGGTTGCTGATGATGTAG............................................................................................................................2413.0030030
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.3375020
...............................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1832.3371060
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2412.0020020
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2132.0062040
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.0010010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT..........................................................................2511.0010010
..........................................................................................................AAGGGAACGGTTGCTGATGATG...............................................................................................................................2211.0010010
.........................................................................................................................................................TTATATCACAGTGGCTGTTCT.................................................................................2111.0010010
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG...........................................................................2211.0010010
............................................................................................................................................................TATCACAGTGGCTGTTCTTA...............................................................................2031.0030030
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2031.0030021
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.0030030
...........................................................................................................AGGGAACGGTTGCTGATGATGTAT............................................................................................................................2411.0010010
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2231.0030030
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2430.6720020
droSim2
CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223816.00244800797972722282537553601315000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................213162.6748810811199451247312154104000
...........................................................................................................AGGGAACGGTTGCTGATGATGTA.............................................................................................................................231137.00137001710092131307624000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23196.0096007680244100001000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19361.3318400212713562641000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................20350.671520033123571614952001000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23350.671520001009061000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24343.331300000007852000000000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18339.001170000610514001000000
...........................................................................................................AGGGAACGGTTGCTGATGATG...............................................................................................................................21125.0025003000005301301000
...........................................................................................................AGGGAACGGTTGCTGATGATGT..............................................................................................................................22122.0022001100115101200000
...................................................................................................................................................................GTGGCTGTTCTTTTT.............................................................................15318.67560000000027281000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21318.3355000550000000000000
............................................................................................................................................................TATCACAGTGGCTGT....................................................................................15315.00450000000012302010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23313.33400000002119000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................24312.67380000002117000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2237.3322000000128101000000
...........................................................................................................AGGGAACGGTTGCTGATGAT................................................................................................................................2014.00400200000100100000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAT............................................................................................................................2413.00300000000300000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2032.67800053000000000000
............................................................................................................................................................TATCACAGTGGCTGTT...................................................................................1632.67800000010052000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................2422.50500500000000000000
..................................................................................................................................GTTC-GAAACTCTCA----CAATTTA...................................................................................................2112.00200100000010000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAA............................................................................................................................2412.00200000000000101000
...............................................................ACCTCAGTG--CGA-------AAATTG.....................................................................................................................................................................1812.00200200000000000000
..........................................................................................................AAGGGAACGGTTGCTGATGATGTA.............................................................................................................................2412.00200000000000200000
...............................................................................................................................................................................................................TTGCCAGGAC----------------ATGAAACAG----AAA-TATTT2712.00200000000200000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA..........................................................................2521.50300000030000000000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2031.33400030010000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2131.33400000022000000000
..................................................................................................................................GTTC-GAAACTCTCA----CAATT.....................................................................................................1911.00100100000000000000
..................................................................................................................................................................................TGTTTGGCAATCGATCTACG.........................................................2011.00100000000010000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTT.............................................................................................................................2311.00100000000000100000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAGT...........................................................................................................................2511.00100000000000100000
..........................................................................................................AAGGGAACGGTTGCTGATGATG...............................................................................................................................2211.00100000000010000000
..................................................................................................................................GTTC-GAAACTCTCA----CAATTT....................................................................................................2011.00100100000000000000
...........................................................................................................AGGGAACGGTTGCTGATGG.................................................................................................................................1911.00100100000000000000
..........................................................................................................AAGGGAACGGTTGCTGATGAT................................................................................................................................2111.00100000000010000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2411.00100000001000000000
........................................................................................................AGAAGGGAACGGTTGCTGATGA.................................................................................................................................2211.00100000000000100000
...............................................................................................................AACGGTTGCTGATGATGTA.............................................................................................................................1911.00100000000000100000
........................................................................................................AGAAGGGAACGGTTGCTGATG..................................................................................................................................2111.00100000000000100000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA............................................................................2230.67200000002000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2130.67200020000000000000
dm3
CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTTGCCAGGAC----------------ATGAAACAG----AAA-TATTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................AGGGAACGGTTGCTGATGATGTA.............................................................................................................................23138897.00388970000303324285800100000000000000000000034501000000000000000000000000000000000000000000007583125013510238892101100040020582660971910041171150047519810900010002000000000000000002811721412901213020000051000000000000120100000000000000000000400000000000000000000120200000000000100000006832010000000010000340113020000000000000100001100012016730901140001001000002032821126632202101190510100
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2316947.00694700005072175351212800000000000000000000000000000000000000000000000100000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010021647202570854621801290000000000000000000000000000000000000001010100000000001247961920100002000000000000000010001010100000100
...........................................................................................................AGGGAACGGTTGCTGATGATGT..............................................................................................................................2216352.006352000000233921000000000000000000000000362000000000000000000000000000000000000000000000062261479338000010000000000140000458910040127400100000000000000000000036749517271720000200000000000000000001000000000000000000000000000000000010000000000000000000000000000014600000010000000000000000000000000000000000000000002883800800001000000000005000010000000040000000
...........................................................................................................AGGGAACGGTTGCTGATGATG...............................................................................................................................2114948.004948000000231000000000000000000000000039670000000000000000000000000000000000000000000000871012124500000000000100020000204000800800000000000000000000000031207162293000000000000000000000000000000000000000000000000000100000000000000000000000000000000000003300000000000000000000000000000000000000000001001003101000200000000000000001000000000000010000010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
...........................................................................................................AGGGAACGGTTGCTGATGAT................................................................................................................................2013286.003286000000020000000000000000000000000029730000000000000000000000000000000000000000000000320041500000000000000000000060005000000000000000000000000000021186000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000201100100000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242585.501171000001011412000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000076132109070500300000000000000000000000000000000000000000000000000000007627500000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...........................................................................................................AGGGAACGGTTGCTGATGA.................................................................................................................................191212.002120000000000000000000000000000000000102000000000000000000000000000000000000000000000010100130000000000000000000001000300200000000000000000000000001612000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000049200000000000000000000000000000000000000000
..........................................................................................................AAGGGAACGGTTGCTGATGATGTA.............................................................................................................................241193.001930000003100000000000000000000000000000000000000000000000000000000000000000000000001811260000000000000000000016000200100000000000000000000000011117000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000129000000000000000000000000000000000000000000
............................................................................................................GGGAACGGTTGCTGATGATGTA.............................................................................................................................221167.001670000001400000000000000000000000000100000000000000000000000000000000000000000000005840029000000000000000603007220002008000000000000000000000000054000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAA............................................................................................................................241134.0013400000023000000000000000000000000002000000000000000000000000000000000000000000000028510270000000000000000000014800020012000000000000000000000000256000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTC.............................................................................................................................231127.001270000000000000000000000000000000000000000000000000000000000000000000000000000000003102500000000000000020000040000003000000000000000000000000047420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
...........................................................................................................AGGGAACGGTTGCTGATGATGTAG............................................................................................................................24196.009600000001000000000000000000000000001000000000000000000000000000000000000000000000019903300000000000000050000300000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000049000000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTT.............................................................................................................................23186.0086000000330000000000000000000000000000000000000000000000000000000000000000000000000250150000000000000002000028000100200000000000000000000000001120020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000016000000000000000000010000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTG.............................................................................................................................23171.007100000061000000000000000000000000000000000000000000000000000000000000000000000000010301300000000000000010000250000017000000000000000000000000023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000023000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
..........................................................................................................AAGGGAACGGTTGCTGATGATGT..............................................................................................................................23164.006400000000000000000000000000000000000000000000000000000000000000000000000000000000040003000000000000000000000000000000000000000000000000000000601900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAT............................................................................................................................24151.005100000013000000000000000000000000002000000000000000000000000000000000000000000000011100300000000000000000000000001003000000000000000000000000143600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000010000000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................24144.004400000006100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000261100000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATG..................................................................................................................................18144.00440000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000000010000002000000000000000000000000785000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000017000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................24133.00330000001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000
..........................................................................................................AAGGGAACGGTTGCTGATGATG...............................................................................................................................22130.00300000000000000000000000000000000000800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
............................................................................................................GGGAACGGTTGCTGATGATGT..............................................................................................................................21127.0027000000000000000000000000000000000010000000000000000000000000000000000000000000000800030000000000000000000000000300500000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
...........................................................................................................AGGGAACGGTTGCTGATGATGTAAA...........................................................................................................................25125.0025000000100000000000000000000000000000000000000000000000000000000000000000000000000100040000000000000000000003100000100000000000000000000000002202000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
...........................................................................................................AGGGAACGGTTGCTGATGATGC..............................................................................................................................22122.0022000000100000000000000000000000000000000000000000000000000000000000000000000000000300010000000000001000000001000000000000000000000000000000000511000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................24121.00210000001022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000000000000
..................................................................................................................................GTTT-GAAACTCTCA----CAATTTA...................................................................................................21121.0021000000000000000000000000000000000010000000000000000000000000000000000000000000000700060000000000000000000004000100000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22121.0021000000040100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000000000000000000000000000000000000000000000000000000000009400000000000000000000000000000000000000000
droEug1
CATCTG----------TGG---CATGCA---T---------------------TTGTG---TCACCTCAATG--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAATGGTTTACCAGGAC----------------ATGAAATTG----AAA------SizeHit CountTotal NormTotal
No Reads
droBia1
CATCTG----------TGG---CACGCA---T---------------------TTGTG---TCACCTCAGTG--CGA-------AAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCA----CAGTTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTTAGTGGTTTTCCAGGAC----------------ATGAAATGG----AAAACATTCSizeHit CountTotal NormTotal
No Reads
droTak1
CATCTG----------TGG---CATGCA---T---------------------TTGTG---TCAACTGAATG--TGAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTTGCTGATTTTCCAGGAC----------------ATGAAATAG----AAA-TTATTSizeHit CountTotal NormTotal
No Reads
droEle1
CATACA----------GGG---AACGGA---T---------------------TTGTG---TCACCTCAATT--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGAGGTTTTAAAATAA-------ATAGCGCACATAAAACAG----AAA-ATATTSizeHit CountTotal NormTotal
No Reads
droRho1
CATCCA----------GGA---AACGCA---T---------------------TTGTG---TCACCTCAATT--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTTCAGTGGTTTTTCAGGAC----------------ACGAAATTG----AAAATATTCSizeHit CountTotal NormTotal
No Reads
droFic1
CATCTG----------CGG---CACGCA---T---------------------TCGTG---TCTCCTCAATG--TGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCA----CCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTGCGTTCAGTGGTTTTCCAGGAC----------------ACGAAATAG----AAAATATCCSizeHit CountTotal NormTotal
No Reads
droKik1
CATCAG----------CGC---GGCCTC---A---------------------GTGTA---TCATCTCTGTT--GGA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCAGTGGTTACCCAGGAC----------------ACGAAATTG----AAA-ATATASizeHit CountTotal NormTotal
No Reads
droAna3
CATTTG----------TGG---CACGCA---T---------------------TTGTG---TCACGTTGGTGGACAG-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCA----TCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTTC------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22315043.3345130367447520074
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2133049.3391489790392028
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2312039.002039920300000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223462.001386013860000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203276.00828267920082
...........................................................................................................AGGGAACGGTCGCTGCTGATGTA.............................................................................................................................23165.006514320001
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21357.6717301720001
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20337.0011101110000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21335.6710740670000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23334.6710401040000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................23333.671013980000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24132.00320320000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19317.33528390023
...........................................................................................................AGGGAACGGTCGCTGCTGATGT..............................................................................................................................22110.0010091000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2219.009450000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1938.67260260000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2038.00245190000
...........................................................................................................AGGGAACGGTCGCTGCTGATGC..............................................................................................................................2217.007070000
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1836.00180180000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1836.00180180000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2036.00187110000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2235.33160150001
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2134.33130130000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2233.3310190000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2433.009170010
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.006330000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1931.675050000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2231.675050000
...........................................................................................................AGGGAACGGTCGCTGCTGATGTAA............................................................................................................................2411.001010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2421.002020000
...........................................................................................................AGGGAACGGTCGCTGCTGAT................................................................................................................................2011.001010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2411.001010000
............................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.003030000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTT...........................................................................2111.001010000
................................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1911.001010000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2131.003030000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................2011.001010000
droBip1
CATCTG----------TGG---CACGAA---T---------------------TTGTGGCATCACCTTGGTGG-ACA-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCC----TCATTTATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATTCTGAAAGGAT----------------A----ATAT----AGA-TACCTSizeHit CountTotal NormTotal
No Reads
dp5
CATCTC----------CGCCGCCGCGCA---T---------------------TCGC-------------------C-------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATC-------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22338201.331146040681510770178307000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2136091.0018273012371700029205000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314325.00432505542662002000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2231760.0052800452724000000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTA.............................................................................................................................231431.00431015280013500001
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203403.001209013410741000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213194.005820505770000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................213169.33508025060000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................233159.004770124641000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233100.003000222770001000
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20362.00186001842000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24257.50115021121000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20340.001200106140000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................22330.339107840000000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19327.6783024590000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22324.677406680000000
...........................................................................................................AGGGAACGGTTGCTGCTGATGT..............................................................................................................................22119.001901120600000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20317.0051032190000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................23313.674108330000000
...........................................................................................................AGGGAACGGTTGCTGCTGATG...............................................................................................................................21112.00120060600000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................22112.00120570000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................24310.673206260000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22310.333109220000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1938.332502230000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2138.002401230000000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1937.6723010130000000
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................1837.002108130000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2417.0070070000000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................2216.0060060000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2135.331600160000000
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1835.001503120000000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTAA............................................................................................................................2414.0040010300000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................2434.001202100000000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTT.............................................................................................................................2314.0040020200000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................2333.0090180000000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTC.............................................................................................................................2313.0030020100000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA.........................................................................2612.0020020000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2332.0060230001000
...........................................................................................................AGGGAACGGTTGCTGCTGATGC..............................................................................................................................2212.0020020000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTC.............................................................................2132.0060150000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT............................................................................2412.0020020000000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................2312.0020020000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTT................................................................................1831.6750500000000
............................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................1931.6750050000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC..........................................................................2521.5030030000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTCC.............................................................................2231.3340040000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................2231.3340310000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................2531.3340040000000
droPer2
CATCTC----------CGCCGCCGCGCA---T---------------------T--------CACC------------------AAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCA----CAATTTATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAACGATC----------CAGGACTTCAGTT---------TCGAAATATAAAAAAA-AAGTGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223146.00438941300115
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21325.00758620005
...........................................................................................................AGGGAACGGTTGCTGCTGATGTA.............................................................................................................................23115.00154011000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21314.67440440000
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035.0015680001
...........................................................................................................AGGGAACGGTTGCTGCTGATG...............................................................................................................................2114.004102010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314.004220000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.009090000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTAA............................................................................................................................2412.002002000
...........................................................................................................AGGGAACGGTTGCTGCTGATGT..............................................................................................................................2211.001001000
...........................................................................................................AGGGAACGGTTGCTGCTGATGTAGT...........................................................................................................................2511.001001000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................1931.003030000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2030.672020000
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................2030.331100000
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1930.331010000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2230.331010000
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1930.331010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................2230.331010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2330.331010000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................2230.331010000
droWil2
TTTTTAGATTTCTCTGTTT---TACCGT---T---------------------TTCTT---TCATTT--------------------------TTTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTGTTTAACA--ATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACA---------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22335155.671054670180701036555
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2138217.002465103441243042
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2311572.001572026015451
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2031168.673506059534411
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................2331099.333298010032880
...........................................................................................................AGGGAACGGTTGCTGTTGATGTA.............................................................................................................................231841.008410008410
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193320.009600609504
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................243217.006510506460
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................223189.675690405650
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................183128.333850303820
...........................................................................................................AGGGAACGGTTGCTGTTGATGT..............................................................................................................................22185.0085000850
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21370.3321101430680
...........................................................................................................AGGGAACGGTTGCTGTTGATG...............................................................................................................................21154.0054000540
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA..........................................................................25346.001380001380
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18345.001350101340
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................23341.671250001250
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................22340.331210101200
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................23332.3397000970
...........................................................................................................AGGGAACGGTTGCTGTTGATGTAA............................................................................................................................24131.0031000310
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................24130.0030000300
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22318.6756000560
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................20316.00480310170
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24210.5021010200
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20310.33310120190
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT..........................................................................22110.0010000100
............................................................................................................................................................TATCACAGTGGCTGTTCTTTA..............................................................................2139.3328010270
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTT..............................................................................2238.6726000260
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA..........................................................................2518.00800080
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2437.3322000220
...........................................................................................................AGGGAACGGTTGCTGTTGA.................................................................................................................................1917.00700070
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2217.00703040
...........................................................................................................AGGGAACGGTTGCTGTTGATGTAAA...........................................................................................................................2516.00600060
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................1936.0018000180
........................................................................................................AGAAGGGAACGGTTGCTGTTGA.................................................................................................................................2215.00500050
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................2134.6714000140
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2134.3313000130
..........................................................................................................AAGGGAACGGTTGCTGTTGATG...............................................................................................................................2214.00400040
...........................................................................................................AGGGAACGGTTGCTGTTGAT................................................................................................................................2014.00400040
................................................................................................................................................................ACAGTGGCTGTTCTTTTTT............................................................................1914.00400040
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................2433.6711000110
............................................................................................................................................................TATCACAGTGGCTGTTCTTTAA.............................................................................2243.2513000130
..........................................................................................................AAGGGAACGGTTGCTGTTGATGTA.............................................................................................................................2413.00300030
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTT............................................................................2113.00301020
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2413.00301020
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................1932.67807010
................................................................................................................................................................ACAGTGGCTGTTCTTTTTA............................................................................1932.67800080
........................................................................................................AGAAGGGAACGGTTGCTGTTGAT................................................................................................................................2312.00200020
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................1932.00600060
..............................................................CATTT--------------------------TTTGTTTAAAAAGA....................................................................................................................................................1912.00200020
..................................................................................................................................GTAT-ACCATTTTGTTTAACA--ATA...................................................................................................2312.00200020
............................................................................................................GGGAACGGTTGCTGTTGATGTA.............................................................................................................................2212.00200020
...........................................................................................................AGGGAACGGTTGCTGTTGATGTG.............................................................................................................................2312.00200020
...............................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................1831.67500050
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2331.33402020
...........................................................................................................................................................ATATCACAGTGGCTGTTCTT................................................................................2031.33400040
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA...........................................................................2231.33400040
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC..........................................................................2511.00100010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT..........................................................................2511.00100010
...........................................................................................................AGGGAACGGTTGCTGTTGATGTAT............................................................................................................................2411.00100010
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTG...........................................................................2111.00100010
...........................................................................................................AGGGAACGGTTGCTGTTGATGTAG............................................................................................................................2411.00100010
...................................................................................................................................................AACA--ATATATCACAGTGGCTGTTCTTTT..............................................................................2811.00100010
.............................................................TCATTT--------------------------TTTGTTTAAAAAGA....................................................................................................................................................2011.00100010
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA..........................................................................2211.00100010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................2411.00100010
...........................................................................................................AGGGAACGGTTGCTGTTGATGTT.............................................................................................................................2311.00100010
...........................................................................................................AGGGAACGGTTGCTGTTGATGTGT............................................................................................................................2411.00100010
...........................................................................................................AGGGAACGGTTGCTGTTGATGC..............................................................................................................................2211.00100010
................................................................................................................ACGGTTGCTGTTGATGTA.............................................................................................................................1811.00100010
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC..........................................................................2531.00300030
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................2131.00300030
droVir3
CAGCCGAA---------AG---TAC-TTTTA-TTATTAACTAACTTGTGCAATTTG-T---TCACTTTAAT----GA-------CGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTA----CTCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC----------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...........................................................................................................AGAGAACGTTCGCTGTTGATGTA.............................................................................................................................23114177.0014177001161000000001212500000000000000010085130602073140069101934372554485419368238212483151470000027027024290220301677245259282338
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................2314063.00406300014990000000000000000000000000000000000000268161105918516791160102701046300025020000042413180000202151591868180
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
...........................................................................................................AGAGAACGTTCGCTGTTGATG...............................................................................................................................2111078.0010780002800000000020000000000000000002010610000794555949451014779523433280001433601000611551000002722221615
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
...........................................................................................................AGAGAACGTTCGCTGTTGATGT..............................................................................................................................221402.004020002400000000212000000000000000000205318180000113219311111212010007400000098570000005119141117
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAA............................................................................................................................241238.0023800050000000001000000000000000000002034000081612333132502000000000007552000000494181416
..........................................................................................................AAGAGAACGTTCGCTGTTGATGTA.............................................................................................................................241197.00197000200000000010000000000000000001001420000174943310211000100021000003528000000201260
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................241130.0013000041000000000000000000000000000000000000000213425611104620002400000012200000001120
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................24268.50137000370000000000000000000000000000000000000004432574946410003000000221600000065625
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-..........................................................................................................................25166.006600010000000000000000000000000000000001000011253202111000000010000012900000062528
...........................................................................................................AGAGAACGTTCGCTGTTGAT................................................................................................................................20164.006400000000000000000000000000000000000011000000300051523410001310000020700000024252
...........................................................................................................AGAGAACGTTCGCTGTTGATGTC.............................................................................................................................23158.0058000000000000000000000000000000000000010000318272100110100000120000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
..................................................................................................................................GT-C-GACCTTTGTA----CTCTTTA...................................................................................................20145.004500040000000010000000000000000000601431600001110000000000000010000000500000000001
..........................................................................................................AAGAGAACGTTCGCTGTTGATG...............................................................................................................................22142.00420002000000000000000000000000000000100000000750154131320000300000002100000001000
...........................................................................................................AGAGAACGTTCGCTGTTGA.................................................................................................................................19240.5081000000000000010000000000000000000000000000221195342060111000400000001500000041000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC..........................................................................25132.00320008000000000000000000000000000000000000000001410210212000900000000100000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA...........................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
..........................................................................................................AAGAGAACGTTCGCTGTTGATGT..............................................................................................................................23127.00270002000000000000000000000000000000001200000320001010100000220000011500000000111
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-........................................................................................................................26114.00140000000000000000000000000000000000000000001210000000001000000000001100000023110
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
...........................................................................................................AGAGAACGTTCGCTGTTGATGC..............................................................................................................................22111.00110007000000001000000000000000000000000000000000000000000000010000010100000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA...........................................................................2419.0090000000000000000000000000000000000000000000001000121100000000000011100000000000
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAG............................................................................................................................2419.0090000000000000100000000000000000000000000000100020100000000000000000210000000010
..........................................................................................................AAGAGAACGTTCGCTGTTGAT................................................................................................................................2119.0090000000000000000000000000000000000000000000000110100002000200000000000000000101
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA...........................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
...........................................................................................................AGAGAACGTTCGCTGTTGATGTT.............................................................................................................................2318.0080000000000000000000000000000000000000000000110000020000000030000000100000000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................2218.0080003000000000000000000000000000000000000000010001000000000100000010100000000000
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT.............................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
...........................................................................................................AGAGAACGTTCGCTGTTGATGTG.............................................................................................................................2317.0070000000000000000000000000000000000000000001320000000000000010000000000000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC...........................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG...........................................................................2416.0060001000000000000000000000000000000000000000000002020000000000000000000000001000
............................................................................................................................................................TATCACAGTGGCTGTTC..................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA............................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
..........................................................................................................................................................TATATCACAGTGGCTGTTCTTT...............................................................................2225.00100001000000000000000000000000000000000000000110000000100000000000000200000011200
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAT............................................................................................................................2415.0050000000000000000000000000000000010000000000200000000000000100000000000000010000
..........................................................................................................AAGAGAACGTTCGCTGTTGATGTAA............................................................................................................................2515.0050000000000000000000000000000000000000000000100000000000000000000000200000001001
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC.........................................................................2624.5090002000000000000000000000000000000000000000100000002000000400000000000000000000
...........................................................................................................AGAGAACGTTCGCTGTTGATC...............................................................................................................................2124.5090001000000000000000000000000000000000000000110010100100000210000000000000000000
.........................................................................................................GAAGAGAACGTTCGCTGTTGATG...............................................................................................................................2314.0040000000000000000000000000000000000000000000100000100010000000000000000000000010
..............................................................................................................GAACGTTCGCTGTTGATGTA.............................................................................................................................2014.0040000000000000000000000000000000000001000000200000000000000000000000000000010000
................................................................................................................ACGTTCGCTGTTGATGTA.............................................................................................................................1814.0040000000000000000000000000000000000000000000210000000000000000000000100000000000
...........................................................................................................AGAGAACGTTCGCTGTTGATGA..............................................................................................................................2214.0040000000000000000000000000000000000000000000120000000000000010000000000000000000
.............................................................................................................AGAACGTTCGCTGTTGATGTA.............................................................................................................................2114.0040001000000000100000000000000000000001000000000000000000000000000000100000000000
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA...........................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC...........................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
......................................................................................CTCGTCAATTGTTTAAAAGGA....................................................................................................................................................2113.0030000000000000000000000000000000000000000000100000000000000000000000100000001000
droMoj3
CTGTGAAATAAATCTTGAA---TA--------GTGTTATCTTAAGTATGTGATTTGTT---CAGTTTCAAAT--CG--------TGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTA----ATCTTTATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTGAG----------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................223175659.67526979301005269462
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................21371420.67214262141002142425
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT............................................................................23120128.00201280000201271
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC............................................................................2339565.33286966000286900
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2035461.67163853000163802
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTC.............................................................................2234979.00149371000149360
............................................................................................................................................................TATCACAGTGGCTGTTCTTTC..............................................................................2131153.673461000034610
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC...........................................................................243749.332248000022480
............................................................................................................................................................TATCACAGTGGCTGTTCTTC...............................................................................203612.001836000018360
...........................................................................................................AGAGAACGTTCGCTGTTGATGT..............................................................................................................................221586.005860204003820
...........................................................................................................AGAGAACGTTCGCTGTTGATGTA.............................................................................................................................231565.005651146004180
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT............................................................................221463.0046300004630
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC...........................................................................241402.0040200004020
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTT.............................................................................213393.671181200011790
............................................................................................................................................................TATCACAGTGGCTGTTCTT................................................................................193276.6783001008281
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA............................................................................233230.3369100006910
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT...........................................................................242181.5036320003610
...........................................................................................................AGAGAACGTTCGCTGTTGATG...............................................................................................................................211171.00171064001070
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTT..............................................................................203132.3339710003960
...........................................................................................................AGAGAACGTTCGCTGTTGATGC..............................................................................................................................221129.0012900001290
..........................................................................................................AAGAGAACGTTCGCTGTTGATGT..............................................................................................................................231116.0011604500710
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTA.............................................................................22389.6726900002690
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTT.............................................................................20389.6726900002690
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC..........................................................................25170.00700000700
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC............................................................................23368.6720600002060
...............................................................................................................................................................CACAGTGGCTGTTCTTTTT.............................................................................19365.3319600001960
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC..........................................................................25353.6716100001610
................................................................................................................................................................ACAGTGGCTGTTCTTTTT.............................................................................18347.6714300001430
..........................................................................................................AAGAGAACGTTCGCTGTTGATG...............................................................................................................................22147.004701900280
............................................................................................................................................................TATCACAGTGGCTGTTCTTTG..............................................................................21346.6714000001400
..............................................................................................................................................................TCACAGTGGCTGTTCTTTT..............................................................................19331.33940000940
...........................................................................................................................................................ATATCACAGTGGCTGTTCTTT...............................................................................21331.33940000940
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTG.............................................................................22328.67860000860
...............................................................................................................................................................CACAGTGGCTGTTCTTTT..............................................................................18328.33850000850
............................................................................................................................................................TATCACAGTGGCTGTTCT.................................................................................18326.33790000790
...........................................................................................................AGAGAACGTTCGCTGTTGATGTAA............................................................................................................................24124.00240600180
..........................................................................................................AAGAGAACGTTCGCTGTTGATGC..............................................................................................................................23122.00220000220
.............................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC............................................................................22316.00480000480
...........................................................................................................AGAGAACGTTCGCTGTTGATGTT.............................................................................................................................23115.0015080070
............................................................................................................................................................TATCACAGTGGCTGTTCTC................................................................................19314.67440000440
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG...........................................................................22113.00130000130
...............................................................................................................................................................CACAGTGGCTGTTCTTTTTT............................................................................20112.00120000120
..............................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT..........................................................................23111.00110000110
.............................................................................................................................................................ATCACAGTGGCTGTTCTTT...............................................................................19311.00330000330
droGri2
CAGTG-----------TTT---TATTCT----ATTTTATTTTACGTGTGT--TTTTTT---------TTGTTAACTC-------CACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAA----TATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTT-------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
............................................................................................................................................................TATCACAGTGGCTGTTCTTTTT.............................................................................2262.5015105
............................................................................................................................................................TATCACAGTGGCTGTTCTTTT..............................................................................2161.831129
............................................................................................................................................................TATCACAGTGGCTGTTCTTT...............................................................................2060.33202

Generated: 10/20/2015 at 10:18 PM