ID:

dya-mir-6-2

 Coordinate:

2R:13624342-13624415 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.7 -29.3 -29.0

Flybase annnotation

pre_miRNA [Dyak\mir-6-2-RM]; utr3 [utr3_minus_3614]; miRNA [Dyak\miR-6-2-RA]

No Repeatable elements found

mature

  1. dya-mir-6-1  2R:13624252-13624273 +
  2. dya-mir-6-2  2R:13624389-13624410 +
  3. dya-mir-6-3  2R:13624541-13624562 +
star

Sense Strand Reads

ATCATTAATAATTTGTTGCTTTTTTTGCTCACAAGTAACCATACCGTTTTTAACCGCAGGGAACCTCTGCTGCTGATATATTATTGAGAAACTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAATTCCAACGATTTGTCATTTGTGGCCCGCATTTTTGTCACCT

******************************************.((((...((((((.(((((((..((((((.(((((((...............)))))))))))))..))))))).)))))).)))).....**************************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 M043

female body

 V046

embryo

 V120

male body		 M026

head

 V058

head

 SRR1275488

Male larvae
.................................................................................................TATCACAGTGGCTGTTCTTTTT....................................................... 22 0 3 88528.67 265586 265335 234 5 12 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTT........................................................ 21 0 3 15870.00 47610 47538 63 1 8 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTT....................................................... 22 1 3 4376.67 13130 13130 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTC....................................................... 22 1 3 2566.67 7700 7700 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 2030.33 6091 6091 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 1730.67 5192 5192 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTT......................................................... 20 0 3 1006.67 3020 3003 15 1 1 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTT........................................................ 21 1 3 762.00 2286 2286 0 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 518.33 1555 1555 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 453.33 1360 1360 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTT........................................................ 21 1 3 364.00 1092 1092 0 0 0 0 0 0
.................................................................................................GATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 332.00 996 995 1 0 0 0 0 0
.................................................................................................TATCACAGCGGCTGTTCTTTTT....................................................... 22 1 3 312.33 937 935 2 0 0 0 0 0
.................................................................................................CATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 292.67 878 878 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTC........................................................ 21 1 3 276.00 828 828 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTG...................................................... 23 0 2 209.00 418 416 2 0 0 0 0 0
.................................................................................................AATCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 195.00 585 585 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTTTT....................................................... 22 1 3 178.00 534 534 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTTTTCTTTTT....................................................... 22 1 3 166.33 499 498 0 1 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTC...................................................... 23 1 3 165.00 495 494 1 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTC......................................................... 20 1 3 138.33 415 415 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGCTCTTTTT....................................................... 22 1 3 136.67 410 402 0 8 0 0 0 0
.................................................................................................TATCACAGTTGCTGTTCTTTTT....................................................... 22 1 3 132.00 396 394 0 2 0 0 0 0
.................................................................................................TATCTCAGTGGCTGTTCTTTTT....................................................... 22 1 3 130.33 391 391 0 0 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGATATA.............................................................................................. 23 0 1 120.00 120 77 0 43 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTTT........................................................ 21 1 3 117.67 353 353 0 0 0 0 0 0
.................................................................................................TATCACATTGGCTGTTCTTTTT....................................................... 22 1 3 105.00 315 314 0 0 0 1 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTC....................................................... 22 2 3 103.67 311 311 0 0 0 0 0 0
................................................................................................CTATCACAGTGGCTGTTCTTTTT....................................................... 23 1 3 101.67 305 305 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTCCTTTTT....................................................... 22 1 3 99.67 299 299 0 0 0 0 0 0
.................................................................................................TATCACACTGGCTGTTCTTTTT....................................................... 22 1 3 99.00 297 297 0 0 0 0 0 0
.................................................................................................TGTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 96.33 289 289 0 0 0 0 0 0
..................................................................................................ATCACAGTGGCTGTTCTTTTT....................................................... 21 0 3 92.00 276 267 9 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTA...................................................... 23 1 3 90.33 271 269 2 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCCTTTT....................................................... 22 1 3 84.33 253 253 0 0 0 0 0 0
.................................................................................................TATCACAGTCGCTGTTCTTTTT....................................................... 22 1 3 80.33 241 240 0 1 0 0 0 0
.................................................................................................TACTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 79.67 239 239 0 0 0 0 0 0
.................................................................................................TATCAGAGTGGCTGTTCTTTTT....................................................... 22 1 3 77.67 233 233 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGATCTTTTT....................................................... 22 1 3 75.67 227 227 0 0 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGATAT............................................................................................... 22 0 1 71.00 71 52 0 18 0 0 1 0
.................................................................................................TATCACAGTGGCTGTTTTTTTT....................................................... 22 1 3 70.67 212 212 0 0 0 0 0 0
.................................................................................................TATCACAGTAGCTGTTCTTTTT....................................................... 22 1 3 69.00 207 190 0 17 0 0 0 0
.................................................................................................TATCACAGTGACTGTTCTTTTT....................................................... 22 1 3 67.00 201 186 0 15 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 64.33 193 193 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 62.67 188 188 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTT.......................................................... 19 0 3 62.00 186 184 2 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTGT....................................................... 22 1 3 62.00 186 186 0 0 0 0 0 0
.................................................................................................TATCACGGTGGCTGTTCTTTTT....................................................... 22 1 3 62.00 186 180 0 6 0 0 0 0
.................................................................................................TATCACAGTGGCTGTGCTTTTT....................................................... 22 1 3 60.00 180 180 0 0 0 0 0 0
.................................................................................................GATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 59.67 179 179 0 0 0 0 0 0
.................................................................................................TATCGCAGTGGCTGTTCTTTTT....................................................... 22 1 3 57.33 172 172 0 0 0 0 0 0
.................................................................................................TATCATAGTGGCTGTTCTTTTT....................................................... 22 1 3 56.00 168 168 0 0 0 0 0 0
.................................................................................................CATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 54.33 163 163 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCCGTTCTTTTT....................................................... 22 1 3 49.33 148 145 0 3 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTCTT....................................................... 22 1 3 48.67 146 146 0 0 0 0 0 0
.....................................................................................................ACAGTGGCTGTTCTTTTT....................................................... 18 0 3 47.00 141 140 1 0 0 0 0 0
.................................................................................................TATCACAGCGGCTGTTCTTTT........................................................ 21 1 3 44.67 134 134 0 0 0 0 0 0
.................................................................................................TATCACAATGGCTGTTCTTTTT....................................................... 22 1 3 43.00 129 129 0 0 0 0 0 0
.................................................................................................TATCACAGAGGCTGTTCTTTTT....................................................... 22 1 3 42.00 126 119 7 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTT......................................................... 20 1 3 41.67 125 125 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTCTTT....................................................... 22 1 3 37.33 112 112 0 0 0 0 0 0
.................................................................................................TATCACAGGGGCTGTTCTTTTT....................................................... 22 1 3 37.00 111 102 9 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTGTTTTT....................................................... 22 1 3 36.00 108 108 0 0 0 0 0 0
.................................................................................................AATCACAGTGGCTGTTCTTTT........................................................ 21 1 3 35.33 106 106 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTGTT....................................................... 22 1 3 35.33 106 106 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTTT........................................................ 21 1 3 35.33 106 106 0 0 0 0 0 0
.................................................................................................TATCACAGTGGGTGTTCTTTTT....................................................... 22 1 3 33.33 100 97 0 3 0 0 0 0
.................................................................................................TATCACAGTGCCTGTTCTTTTT....................................................... 22 1 3 32.00 96 94 0 2 0 0 0 0
.................................................................................................TATCACAGTGGCTGCTCTTTT........................................................ 21 1 3 31.67 95 94 0 1 0 0 0 0
.................................................................................................TATCACAGTGTCTGTTCTTTTT....................................................... 22 1 3 31.33 94 94 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTA....................................................... 22 1 3 31.33 94 94 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTATTCTTTTT....................................................... 22 1 3 30.00 90 88 0 2 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTT......................................................... 20 1 3 29.67 89 89 0 0 0 0 0 0
.................................................................................................TATTACAGCGGCTGTTCTTTTT....................................................... 22 2 3 28.00 84 84 0 0 0 0 0 0
.................................................................................................TTTTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 28.00 84 84 0 0 0 0 0 0
.................................................................................................TATCACAGTGGTTGTTCTTTTT....................................................... 22 1 3 27.67 83 80 0 3 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTT......................................................... 20 1 3 27.00 81 81 0 0 0 0 0 0
.................................................................................................TATCTCAGTGGCTGTTCTTTT........................................................ 21 1 3 26.67 80 80 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCGTTTT....................................................... 22 1 3 26.33 79 79 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGGTCTTTTT....................................................... 22 1 3 25.67 77 66 0 9 1 1 0 0
.................................................................................................TATCACAGTTGCTGTTCTTTT........................................................ 21 1 3 25.00 75 75 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTTTTCTTTT........................................................ 21 1 3 24.00 72 72 0 0 0 0 0 0
.........................................................ATGGAACCTCTGCTGCTGATATA.............................................................................................. 23 1 1 24.00 24 24 0 0 0 0 0 0
.................................................................................................TGTTACAGTGGCTGTTCTTTT........................................................ 21 2 3 22.67 68 68 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTCCTTTT........................................................ 21 1 3 22.67 68 68 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGCTCTTTTT....................................................... 22 2 3 22.33 67 67 0 0 0 0 0 0
...................................................................................................TCACAGTGGCTGTTCTTTTT....................................................... 20 0 3 22.33 67 67 0 0 0 0 0 0
.................................................................................................TATCACACTGGCTGTTCTTTT........................................................ 21 1 3 21.67 65 65 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTGC..................................................... 24 1 2 21.50 43 43 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTACTTTTT....................................................... 22 1 3 21.33 64 64 0 0 0 0 0 0
....................................................................................................CACAGTGGCTGTTCTTTTT....................................................... 19 0 3 21.00 63 62 1 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 21.00 63 63 0 0 0 0 0 0
.................................................................................................TAGCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 20.33 61 61 0 0 0 0 0 0
.................................................................................................TATCACATTGGCTGTTCTTTT........................................................ 21 1 3 20.00 60 60 0 0 0 0 0 0
.................................................................................................TATCACAGTCGCTGTTCTTTT........................................................ 21 1 3 19.33 58 58 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGATCTTTT........................................................ 21 1 3 19.00 57 57 0 0 0 0 0 0
.................................................................................................TAACACAGTGGCTGTTCTTTTT....................................................... 22 1 3 19.00 57 57 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTGTTT....................................................... 22 1 3 17.67 53 53 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTG........................................................ 21 1 3 16.67 50 50 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTATT....................................................... 22 1 3 16.67 50 50 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTATTTTT....................................................... 22 1 3 16.67 50 50 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCCTTT........................................................ 21 1 3 16.00 48 48 0 0 0 0 0 0
................................................................................................CTATCACAGTGGCTGTTCTTTT........................................................ 22 1 3 16.00 48 47 1 0 0 0 0 0
................................................................................................CGATCACAGTGGCTGTTCTTTTT....................................................... 23 2 3 15.67 47 47 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTCT....................................................... 22 1 3 15.00 45 45 0 0 0 0 0 0
.................................................................................................TATCAGAGTGGCTGTTCTTTT........................................................ 21 1 3 14.67 44 44 0 0 0 0 0 0
.................................................................................................TATCACGGTGGCTGTTCTTTT........................................................ 21 1 3 14.33 43 41 0 2 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGATA................................................................................................ 21 0 1 13.00 13 9 0 4 0 0 0 0
.................................................................................................TATCACAGTGACTGTTCTTTT........................................................ 21 1 3 13.00 39 34 0 5 0 0 0 0
.........................................................ATGGAACCTCTGCTGCTGATAT............................................................................................... 22 1 1 13.00 13 13 0 0 0 0 0 0
.................................................................................................TATCACAGTAGCTGTTCTTTT........................................................ 21 1 3 12.67 38 34 0 4 0 0 0 0
..................................................................................................ATCACAGTGGCTGTTCTTTT........................................................ 20 0 3 12.67 38 36 2 0 0 0 0 0
.................................................................................................TATCACAGTGGCAGTTCTTTTT....................................................... 22 1 3 12.67 38 38 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTTTTTT........................................................ 21 1 3 12.00 36 36 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTGCTTTT........................................................ 21 1 3 11.67 35 35 0 0 0 0 0 0
.................................................................................................TATCGCAGTGGCTGTTCTTTT........................................................ 21 1 3 11.33 34 34 0 0 0 0 0 0
.................................................................................................TATCATAGTGGCTGTTCTTTT........................................................ 21 1 3 10.33 31 31 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTCTTCTTTTT....................................................... 22 1 3 10.00 30 28 0 2 0 0 0 0
..................................................................................................AGCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 10.00 30 30 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTC........................................................ 21 2 3 9.67 29 29 0 0 0 0 0 0
.................................................................................................GATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 9.67 29 29 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTCT........................................................ 21 1 3 9.67 29 29 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 9.50 19 19 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCCGTTCTTTT........................................................ 21 1 3 9.33 28 28 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTC........................................................ 21 2 3 9.33 28 28 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCATTTT....................................................... 22 1 3 9.33 28 28 0 0 0 0 0 0
...............................................................................................TCTATCACAGTGGCTGTTCTTTTT....................................................... 24 1 3 9.33 28 28 0 0 0 0 0 0
.................................................................................................TATGACAGTGGCTGTTCTTTTT....................................................... 22 1 3 9.00 27 27 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTCTT........................................................ 21 1 3 8.67 26 26 0 0 0 0 0 0
.................................................................................................TATAACAGTGGCTGTTCTTTTT....................................................... 22 1 3 8.67 26 26 0 0 0 0 0 0
.................................................................................................TACTACAGTGGCTGTTCTTTT........................................................ 21 2 5 8.20 41 41 0 0 0 0 0 0
.................................................................................................TATCACAGCGGCTGTTCTTTTC....................................................... 22 2 3 8.00 24 24 0 0 0 0 0 0
.............................................................................................GATCTATCACAGTGGCTGTTCTTTTT....................................................... 26 3 3 8.00 24 24 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTATTT....................................................... 22 1 3 7.67 23 23 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTTTTT......................................................... 20 1 3 7.67 23 22 0 1 0 0 0 0
.................................................................................................TATTTCAGTGGCTGTTCTTTTT....................................................... 22 2 4 7.50 30 30 0 0 0 0 0 0
.................................................................................................TATCACAGGGGCTGTTCTTTT........................................................ 21 1 3 7.33 22 17 4 1 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCT........................................................... 18 0 3 7.33 22 21 1 0 0 0 0 0
.................................................................................................TGCCACAGTGGCTGTTCTTTTT....................................................... 22 2 3 7.33 22 22 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTC......................................................... 20 2 3 7.00 21 21 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTTTTCTTTTC....................................................... 22 2 3 7.00 21 21 0 0 0 0 0 0
.........................................................ATGGAACCTCTGCTGCTGATA................................................................................................ 21 1 1 7.00 7 7 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTC........................................................ 21 2 3 7.00 21 21 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 7.00 21 21 0 0 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGATAC............................................................................................... 22 1 1 7.00 7 7 0 0 0 0 0 0
.................................................................................................TATCACTGTGGCTGTTCTTTTT....................................................... 22 1 3 6.67 20 20 0 0 0 0 0 0
.................................................................................................TATCACAGAGGCTGTTCTTTT........................................................ 21 1 3 6.67 20 20 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTTTC....................................................... 22 2 3 6.67 20 20 0 0 0 0 0 0
.................................................................................................CATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 6.67 20 20 0 0 0 0 0 0
.................................................................................................TATTACGGTGGCTGTTCTTTTT....................................................... 22 2 4 6.50 26 26 0 0 0 0 0 0
.................................................................................................TATTACAGCGGCTGTTCTTTT........................................................ 21 2 3 6.33 19 19 0 0 0 0 0 0
.................................................................................................TATCACAGTGGTTGTTCTTTT........................................................ 21 1 3 6.33 19 18 0 1 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCGTTT........................................................ 21 1 3 6.33 19 19 0 0 0 0 0 0
...................................................................................................TATCAGTGGCTGTTCTTTTT....................................................... 20 2 4 6.25 25 25 0 0 0 0 0 0
.................................................................................................TAGCACAGTGGCTGTTCTTTT........................................................ 21 1 3 6.00 18 18 0 0 0 0 0 0
.........................................................AGCGAACCTCTGCTGCTGATATA.............................................................................................. 23 1 1 6.00 6 6 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 6.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTGTTTT........................................................ 21 1 3 5.67 17 17 0 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTT......................................................... 20 1 3 5.67 17 17 0 0 0 0 0 0
.................................................................................................TATCACAATGGCTGTTCTTTT........................................................ 21 1 3 5.67 17 17 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 5.67 17 17 0 0 0 0 0 0
................................................................................................ATATCACAGTGGCTGTTCTTTT........................................................ 22 0 3 5.67 17 17 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTG....................................................... 22 1 3 5.67 17 17 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTATTCTTTT........................................................ 21 1 3 5.33 16 15 0 1 0 0 0 0
.................................................................................................TATCACAGTGCCTGTTCTTTT........................................................ 21 1 3 5.33 16 16 0 0 0 0 0 0
.................................................................................................TTTTACAGTGGCTGTTCTTTT........................................................ 21 2 4 5.25 21 21 0 0 0 0 0 0
.................................................................................................CATTACAGTGGCTGTTCTTTTT....................................................... 22 2 3 5.00 15 15 0 0 0 0 0 0
.................................................................................................TATCACAGTGGGTGTTCTTTT........................................................ 21 1 3 5.00 15 15 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGGGGTTTTT....................................................... 22 3 5 5.00 25 0 0 25 0 0 0 0
.................................................................................................TACCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 5.00 15 15 0 0 0 0 0 0
.................................................................................................AATCACAGTGGCTGTTCTTTTC....................................................... 22 2 3 5.00 15 15 0 0 0 0 0 0
..................................................................................................ATCACAGTGGCTGTTCTTTTC....................................................... 21 1 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................TATTACAGTCGCTGTTCTTTTT....................................................... 22 2 3 4.67 14 14 0 0 0 0 0 0
..............................................................................................ATCTATCACAGTGGCTGTTCTTTTT....................................................... 25 2 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTA....................................................... 22 2 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................GATCACAGTGGCTGTTCTTT......................................................... 20 1 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGCTCTTTTC....................................................... 22 2 3 4.67 14 14 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 4.67 14 14 0 0 0 0 0 0
..................................................................................................ATCACAGTGGCTGTTCTTTTTG...................................................... 22 0 2 4.50 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGGTCTTTT........................................................ 21 1 3 4.33 13 10 0 1 0 1 0 1
.................................................................................................TATTACAGTGGCTGTCCTTTTT....................................................... 22 2 3 4.33 13 13 0 0 0 0 0 0
.................................................................................................TATTACAGTTGCTGTTCTTTTT....................................................... 22 2 3 4.33 13 13 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGATCTTTTT....................................................... 22 2 3 4.33 13 13 0 0 0 0 0 0
.................................................................................................TATCTCAGTGGCTGTTCTTTTC....................................................... 22 2 3 4.33 13 13 0 0 0 0 0 0
................................................................................................CGATCACAGTGGCTGTTCTTTT........................................................ 22 2 3 4.00 12 12 0 0 0 0 0 0
...................................................................................................TCACAGTGGCTGTTCTTTTTGG..................................................... 22 0 1 4.00 4 4 0 0 0 0 0 0
.................................................................................................TATCACAGCGGCTGTTCTTT......................................................... 20 1 3 4.00 12 12 0 0 0 0 0 0
.........................................................TGGGAACCTCTGCTGCTGATATA.............................................................................................. 23 1 1 4.00 4 4 0 0 0 0 0 0
.....................................ACCATACCGTTTTTAACCGC..................................................................................................................... 20 0 1 4.00 4 3 0 1 0 0 0 0
.................................................................................................TATTACAGTGGATGTTCTTTTT....................................................... 22 2 3 4.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTGT........................................................ 21 1 3 4.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACAACGGCTGTTCTTTTT....................................................... 22 2 3 4.00 12 12 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 4.00 8 8 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTCTTCTTTT........................................................ 21 1 3 4.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCAGTTCTTTT........................................................ 21 1 3 4.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACAGTTGCTGTTCTTTTC....................................................... 22 2 3 4.00 12 12 0 0 0 0 0 0
..................................................................................................ATAACAGTGGCTGTTCTTTTT....................................................... 21 1 3 3.67 11 11 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGGTGTTTTT....................................................... 22 2 3 3.67 11 0 0 11 0 0 0 0
.................................................................................................CATCACAGTGGCTGTTCTTT......................................................... 20 1 3 3.67 11 11 0 0 0 0 0 0
.................................................................................................TATCACAGTGTCTGTTCTTTT........................................................ 21 1 3 3.67 11 11 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTTTTCTTTTT....................................................... 22 2 3 3.67 11 11 0 0 0 0 0 0
.................................................................................................TAACACAGTGGCTGTTCTTTT........................................................ 21 1 3 3.67 11 11 0 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTTTTG...................................................... 23 1 2 3.50 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGCTCTTTT........................................................ 21 2 3 3.33 10 10 0 0 0 0 0 0
.................................................................................................TGTTACAGTGGCTGTTCTTTTC....................................................... 22 3 3 3.33 10 10 0 0 0 0 0 0
.................................................................................................TATCACGGTGGCTGTTCTTTTC....................................................... 22 2 3 3.33 10 10 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTACTTTT........................................................ 21 1 3 3.33 10 10 0 0 0 0 0 0
................................................................................................CTATCACAGTGGCTGTTCTTTTC....................................................... 23 2 3 3.33 10 10 0 0 0 0 0 0
..................................................................................................TTCACAGTGGCTGTTCTTTTT....................................................... 21 1 3 3.33 10 10 0 0 0 0 0 0
.................................................................................................TATCACCGTGGCTGTTCTTTTT....................................................... 22 1 3 3.33 10 10 0 0 0 0 0 0
.................................................................................................TATTACACTGGCTGTTCTTTTT....................................................... 22 2 4 3.25 13 13 0 0 0 0 0 0
.................................................................................................TATTGCAGTGGCTGTTCTTTTT....................................................... 22 2 4 3.00 12 12 0 0 0 0 0 0
.................................................................................................TATCACATTGGCTGTTCTTTTC....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTT......................................................... 20 1 3 3.00 9 8 0 0 1 0 0 0
.................................................................................................TATCACAGTGGCTGTGCTTTTC....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................AATCACAGTGGCTGTTCTTT......................................................... 20 1 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTATT........................................................ 21 1 3 3.00 9 9 0 0 0 0 0 0
.........................................................ATGGAACCTCTGCTGCTGATAC............................................................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0
.................................................................................................TGTCTCAGTGGCTGTTCTTTTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTGC....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TCTCACAGTGGCTGTTCTTTTT....................................................... 22 1 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTCTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTCCTTTTC....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATTACAGTGACTGTTCTTTTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TGTCACAGTTGCTGTTCTTTTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGGATGTTCTTGTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTCGCTGTTCTTTTC....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTTTTTTT....................................................... 22 2 3 3.00 9 9 0 0 0 0 0 0
....................................................................................................CACAGTGGCTGTTCTTTT........................................................ 18 0 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TATCACACTGGCTGTTCTTTTC....................................................... 22 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTC.......................................................... 19 1 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGGTATTTTT....................................................... 22 2 3 2.67 8 0 0 8 0 0 0 0
.................................................................................................TGTCACAGCGGCTGTTCTTTTT....................................................... 22 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTCTTC....................................................... 22 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TACCACAGTGACTGTTCTTTTT....................................................... 22 2 3 2.67 8 8 0 0 0 0 0 0
.................................................................................................TATCACGTTGGCTGTTCTTTTT....................................................... 22 2 4 2.50 10 10 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTTTTCTTTTT....................................................... 22 2 4 2.50 10 10 0 0 0 0 0 0
.................................................................................................TATTACAGGGGCTGTTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
....................................................................................................TACAGTGGCTGTTCTTTTT....................................................... 19 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTCTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
..................................................................................................TACACAGTGGCTGTTCTTTTT....................................................... 21 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCCTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTGTT........................................................ 21 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTATAGTGGCTGTTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTAGCTGTTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TACCACATTGGCTGTTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCGGTTCTTTTT....................................................... 22 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTT.......................................................... 19 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGGTGTTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATCACAGTCGCTGTTCTTT......................................................... 20 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTCCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATCACAGTTGCTGTTCTTT......................................................... 20 1 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTGCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGCTCTTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCCTTTT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGATCTTTGT....................................................... 22 2 3 2.33 7 7 0 0 0 0 0 0
...................................................................................................TCACAGTGGCTGTTCTTTT........................................................ 19 0 3 2.33 7 6 1 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGCTCTTT......................................................... 20 1 3 2.33 7 6 0 1 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTC......................................................... 20 2 4 2.25 9 9 0 0 0 0 0 0
.................................................................................................TATCACAGTGACTGTTCTTTTC....................................................... 22 2 4 2.25 9 9 0 0 0 0 0 0
.................................................................................................TACCACACTGGCTGTTCTTTTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTGGCGCCA................................................ 29 3 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TATCAGAGTGGCTGTTCTTTTC....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGATACA.............................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTTTGGCACC................................................. 28 3 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 2.00 6 6 0 0 0 0 0 0
...................................................................................................TCACAGTGGCTGTTCTTTTTGGTT................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0
.........................................................ATCGAACCTCTGCTGCTGATATA.............................................................................................. 23 2 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TATCCCAGTGGCTGTTCTTTTT....................................................... 22 1 3 2.00 6 6 0 0 0 0 0 0
..................................................................................................ATCTCAGTGGCTGTTCTTTTT....................................................... 21 1 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TACCACAGTGGCTGTTCCTTTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTTATAT............................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTCTTTA........................................................ 21 1 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TATTACATTGGCTGTTCTTTTT....................................................... 22 2 4 2.00 8 8 0 0 0 0 0 0
.................................................................................................TATCTCAGTGGCTGTTCTTT......................................................... 20 1 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTCCTTTTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTGTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.........................................................AGGGAACTTCTGCTGCTGATATA.............................................................................................. 23 1 1 2.00 2 0 0 2 0 0 0 0
.........................................................AGGGAACCTCTGCTGCTGAT................................................................................................. 20 0 1 2.00 2 1 0 1 0 0 0 0
...................................................................................................TGACAGTGGCTGTTCTTTTT....................................................... 20 1 3 2.00 6 6 0 0 0 0 0 0
...................................................................................................TCACAGTGGCTGTTCTTTTTGGT.................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTATTCTTTTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TGTCACAGTGGCTGTTCTTTTTA...................................................... 23 2 3 2.00 6 6 0 0 0 0 0 0
..................................................................................................ATCACAGTGGCTGTTCTTTTTGG..................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TGTCACACTGGCTGTTCTTTTT....................................................... 22 2 3 2.00 6 6 0 0 0 0 0 0
.........................................................AGGTAACCTCTGCTGCTGATATA.............................................................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
......................................CCATACCGTTTTTAACCGC..................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................................TTTCACAGTGGCTGTTCTTTTTC...................................................... 23 2 3 2.00 6 6 0 0 0 0 0 0
.................................................................................................TATCACAGTGAGAGTTCTTTTT....................................................... 22 3 4 1.75 7 7 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCTGTTCTTCTT....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTTTTCTTT......................................................... 20 1 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTTTTTTC....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATGACAGTGGCTGTTCTTTT........................................................ 21 1 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................CATCACAGTGGCTTTTCTTTTT....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATTACAGTGTCTGTTCTTTTT....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATTACAATGGCTGTTCTTTTT....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATCACAGTGGCTGTTATTTT........................................................ 21 1 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATTACAGTGGCCGTTCTTTTT....................................................... 22 2 3 1.67 5 5 0 0 0 0 0 0
.................................................................................................TATCACAGAGGCTGTTCTTT......................................................... 20 1 3 1.67 5 4 1 0 0 0 0 0

Anti-sense strand reads

TAGTAATTATTAAACAACGAAAAAAACGAGTGTTCATTGGTATGGCAAAAATTGGCGTCCCTTGGAGACGACGACTATATAATAACTCTTTGAAGATATAGTGTCACCGACAAGAAAAACCAACGTGCCGGTTAAGGTTGCTAAACAGTAAACACCGGGCGTAAAAACAGTGGA

****************************************.((((...((((((.(((((((..((((((.(((((((...............)))))))))))))..))))))).)))))).)))).....****************************************** 		Read size # Mismatch Hit Count Total Norm Total V046

embryo
.......................................................CGTCCCTTGGAGACGACGACTA................................................................................................. 22 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2R:13624292-13624465 + dya-mir-6-2 Known_mirbase ATCA---TT------AATAA-TTTG--TTG-CTT-TT----TT-----------------------------------------------------------------------------TGCTC---ACAAGTAA---CCA-TACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATTG--------------------------------AGAAACT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCCCG------------------CATTT------TTG-----------TCACCT
droEre2 scaffold_4845:9748578-9748749 - der-mir-6-2 Known_mirbase ATCA---TC----------ATTT-TG-TTGCCTTATT----TT-----------------------------------------------------------------------------GGTGC---ACGAAAAC---CCA-TACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATTG--------------------------------A-AAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCT
droSec2 scaffold_1:13063057-13063229 - dse-mir-6-2 Known_mirbase ATCA---TT----------ATTT-AA-TTTACTTTTT----TT-----------------------------------------------------------------------------TGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCT
droSim2 2r:16195596-16195771 - dsi-mir-6-2 Known_mirbase ATCA---TT----------ATTT-AA-TTTACTTT-TTTTTTT-----------------------------------------------------------------------------CGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCT
dm3 chr2R:15548324-15548498 - dme-mir-6-2 Known_mirbase ATCA---TT----------ATTT-AATTTT-TTT--T----TTTTTT-------------------------------------------------------------------------GGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCT
droEug1 scf7180000409474:2397351-2397525 + ATCA---TT----------CGTT-TTGTTT-TTT-GT----TTT-AT-------------------------------------------------------------------------ATTTG---ACAAACAA---CCA-TGCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATCA--------------------------------GGAAACT--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTG---GCATG------------------CATTT------GTG-----------TCACCT
droBia1 scf7180000302143:3059243-3059404 - ATCAG---A----------CGTT-TAGTTC------------T-----------------------------------------------------------------------------CCCTG---ACAAGTAT---CTA-TTCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAACT--------------------------------A-AAG-----CTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTG---GCACG------------------CATTT------GTG-----------TCACCT
droTak1 scf7180000415384:84563-84727 + ACCAG---T----------CGTT-TT-----------------------------------------------------------------------------------------AGTTTATCTG---ACAAACAC---CCA-TTCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------A-AAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTG---GCATG------------------CATTT------GTG-----------TCAACT
droEle1 scf7180000491201:2013402-2013578 - ATCAAAGCG---GCCAAT-ATT---TGTTT------------TC-----------------------------------------------------------------------ATT-TTCCCG---ACAAATAC---CCA-TTCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCA--------------------------------A-AAACT--TTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGG---GAACG------------------GATTT------GTG-----------TCACCT
droRho1 scf7180000780066:74178-74347 + ATCAAAG-------------CTC-TAGTTT-TAT--T----TT-----------------------------------------------------------------------------TCCTG---ACAAATAC---CAA-GTCTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCG--------------------------------A-AAACT--TTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGG---AAACG------------------CATTT------GTG-----------TCACCT
droFic1 scf7180000454039:847464-847641 - ATCAA---T----------GTTT-TTGTTT-TTC-TT----TTCGTT-------------------------------------------------------------C-------GT--ATCTG---ACAAACAT---CCA-TTCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATCG--------------------------------A-AAACT--CGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCG---GCACG------------------CATTC------GTG-----------TCTCCT
droKik1 scf7180000302679:88770-88947 - ACCAA---G------GCTCA-TTTGGGTTT--AT-AT----TTTCTTA------------------------------------------------------------------------GTGTG---ACA-TTTC---TTC-TACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCA--------------------------------A-GAATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCAGCG---CGGCC------------------TCAGT------GTA-----------TCATCT
droAna3 scaffold_13266:9731902-9732096 + dan-mir-6-2 Known_mirbase AGCCAAA--CCCGAGAATGT-TCTGTG--A---T-----TTTTCGT-T------------------------------------------------------------------------ATCCGACGACAAATAT----TA-TTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTC----------------------CCAAAAAAAAAATCA--CCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACGT
droBip1 scf7180000396427:874854-875044 + AGCCAAG-ACCCAAGAA----TT-GTG--A---T-----TTTTCGC-C------------------------------------------------------------------------ATCCGAC-AGATATTA---TTA-TTCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTT------------------TCGA--------ACTATCT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTG---GCACG------------------AATTT------GTGGC-------A-TCACCT
dp5 3:12676899-12677088 - dps-mir-6-2 Known_mirbase AGCCAAG-------GAA----TC-GCGTT-------------------------------------------------------------------------GTGCAGTGCTTCCAGT--TACTG---ACAAATCC---CCG-TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCAC----------------------CCATCTTT-GACATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCG------------------CATTC------G-----------------CC
droPer2 scaffold_2:8906584-8906773 + dpe-mir-6-3 Known_mirbase AGCCAAG-------GAA----TC-GCGTT-------------------------------------------------------------------------GTGCAGTGCTTCCAGT--TACTC---ACAAATCC---CCG-TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCAC----------------------CCATCTTT-GACATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCG------------------CATT----------------------CACC-
droWil2 scf2_1100000004514:1651096-1651314 - dwi-mir-6-2 Known_mirbase AACAA---C----------AACA-A------------------C------------------------AACACATTCAAAATATTAACAAAAATATTATTTAGTGAAGTGTTTT--------TT---------------AAA-GTTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATATA-TATTAT-TGTTATATATAATTTAAA-------AATGATTT--TCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTAGA---TTTCT------------------CTGTT------TTA-----------CCGTTT
droVir3 scaffold_12875:4112717-4112935 + dvi-mir-6-2 Known_mirbase AACGT---T----------GATT-TC----------------T---TA------------AATTGTGAAAATTGAATA-AATA---------------------------T------T--TGCTG---ACAAATTTCTTATG-TGCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGATTATAT--------------------------CGAT--TCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCCGAA---A---GTACTTTTAT-TATTAACTAACTT------GTGCAA---TTTGTTCACTT
droMoj3 scaffold_6496:20936083-20936299 - dmo-mir-6-2 Known_mirbase AGCA---TT----------ATTT-T-----------------TCGC-CAATTGCCAAATATAAAGTGAAACATGAGCACAGTA---------------------------TT--------CGCAG---ACATATATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATATGTATT-TGT--------------------------CAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTG---AAATA------------------AATCTTGAATAGTG-----------TTATCT
droGri2 scaffold_15112:2108016-2108213 - dgr-mir-6-2 Known_mirbase AAAA---TG----------AGTA-ATGTTA------------TC-------------------------------------------------------------AACC-----------GCTGC---ATAAATTC-ACCAA-TGCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACCA---------------------------TATTTATACACG--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGT---G---TTTTA-----TTCTATTTTATTTTACGT------GTGTTTTTTTTTG-TTAACT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
ATCA---TT------AATAA-TTTG--TTG-CTT-TT----TT-----------------------------------------------------------------------------TGCTC---ACAAGTAA---CCA-TACCGTTT--TTAACCGCAGGGAACCTCTGCTGCTGATATATTATTG--------------------------------AGAAACT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCCCG------------------CATTT------TTG-----------TCACCTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22388528.672655860234265335500120000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................21315870.00476100634753810080000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................2232566.67770000770000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2031006.673020015300310010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................213276.008280082800000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232209.004180241600000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................233165.004950149400000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................203138.334150041500000000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATATA.......................................................................................................................................................................231120.001200077430000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21392.002760926700000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................23390.332710226900000000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATAT........................................................................................................................................................................22171.00710052180100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19362.001860218400000000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................18347.001410114000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................22331.3394009400000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20322.3367006700000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................24221.5043004300000000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................19321.0063016200000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................21316.6750005000000000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATA.........................................................................................................................................................................21113.001300940000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................20312.6738023600000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................1837.3322012100000000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATAC........................................................................................................................................................................2217.00700700000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2235.6717001700000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................2235.6717001700000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................2134.6714001400000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2224.50900900000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG............................................................................................2214.00400400000000
.......................................................................................................................................A---CCA-TACCGTTT--TTAACCGC..............................................................................................................................................................................................2014.00400310000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTGC..............................................................................................2233.00900900000000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................1832.67800800000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................1932.67800800000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1932.33701600000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT..........................................................................................2412.00200200000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2132.00600600000000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGAT..........................................................................................................................................................................2012.00200110000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT...........................................................................................2312.00200200000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG............................................................................................2312.00200200000000
...........................................................................................................................................CCA-TACCGTTT--TTAACCGC..............................................................................................................................................................................................1912.00200200000000
droEre2
ATCA---TC----------ATTT-TG-TTGCCTTATT----TT-----------------------------------------------------------------------------GGTGC---ACGAAAAC---CCA-TACCGTTT--TTAACCCCAGGGAACCTCTGCTGCTGATATATTATTG--------------------------------A-AAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAGCGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22310965.6732897490027970056160
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2132527.677583713686301510
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................223198.00594958500000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................203195.675877550501240
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................213131.673953702500000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232114.002284518200100
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATATA.......................................................................................................................................................................23144.00442011013000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................21326.007817700000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATAT........................................................................................................................................................................22125.00257909000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................23319.005715600000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................23318.6756163800020
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................20317.3352411100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................20316.334904801000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19314.3343103001110
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20310.673223900000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATA.........................................................................................................................................................................2118.0081205000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................2425.501101100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................2235.331661000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG............................................................................................2413.0033000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2222.5052300000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2132.3374300000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................1932.0066000000
.......................................................................................................................................C---CCA-TACCGTTT--TTAACCCC..............................................................................................................................................................................................2012.0020200000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1932.0061500000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG............................................................................................2212.0020200000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGCA..........................................................................................2612.0021100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................2431.6750500000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................1831.3340400000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2231.3341300000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................2331.3342200000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGATAC........................................................................................................................................................................2211.0010100000
...................................................................................................................................................................GGAACCTCTGCTGCTGATATT.......................................................................................................................................................................2111.0010100000
.................................................................................................................................................................AGGGAACCTCTGCTGCTGAT..........................................................................................................................................................................2011.0010001000
..................................................................................................................................................................GGGAACCTCTGCTGCTGATATA.......................................................................................................................................................................2211.0011000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..............................................................................................2231.0030300000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................1831.0032100000
..................................................................................................................................................................GGGAACCTCTGCTGCTGATAT........................................................................................................................................................................2111.0011000000
................................................................................................................................................................CAGGGAACCTCTGCTGCTGATAT........................................................................................................................................................................2311.0011000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2131.0030300000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................1830.6720200000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................2430.6722000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................2230.6722000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1930.6720200000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTACC.............................................................................................2330.6720200000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................2330.6720200000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTG..............................................................................................2130.6722000000
droSec2
ATCA---TT----------ATTT-AA-TTTACTTTTT----TT-----------------------------------------------------------------------------TGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22327140.338142117131478922772
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2138065.33241962271023821138
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................2323579.5071591011697978
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2031417.004251233419035
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................193259.677793075719
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................233126.33379203689
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................183112.00336003342
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21392.0027614701281
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATA.......................................................................................................................................................................23172.007220700
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATAT........................................................................................................................................................................22171.007120681
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................18367.33202101965
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................24254.50109101080
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................22332.339720941
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................22329.008710851
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................22222.5045160290
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20319.6759100481
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTTG.............................................................................................19216.503300330
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATA.........................................................................................................................................................................21116.001600160
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................24314.004200411
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................20311.3334230110
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................23311.003310320
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................2237.332220200
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG............................................................................................2417.0071060
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1936.331920170
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1935.331620140
.................................................................................................................................................................AGGGAACTTCTGCTGCTGAT..........................................................................................................................................................................2015.0050050
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................2425.001000100
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2134.331300130
......................................................................................................................................AA---CCA-TGCCGTTT--TTAACCCC..............................................................................................................................................................................................2114.0040040
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................2133.671100110
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................2333.331000100
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG............................................................................................2313.0030030
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................1832.3371060
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................1932.3375020
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2132.0062040
....................................................................................................................................ATAA---CCA-TGCCGTTT--TTAACCCC..............................................................................................................................................................................................2312.0020020
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2231.0030030
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATATT.....................................................................................................................................................................2511.0010010
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAT......................................................................................................................................................................2411.0010010
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTG.............................................................................................2021.0021010
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.............................................................................................2231.0030030
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGGT...........................................................................................2411.0010010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTA................................................................................................2031.0030030
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................2031.0030021
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAG......................................................................................................................................................................2411.0010010
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.............................................................................................2121.0021010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..............................................................................................2230.6720020
droSim2
ATCA---TT----------ATTT-AA-TTTACTTT-TTTTTTT-----------------------------------------------------------------------------CGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................223816.00244800797972722282537553601315000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATA.......................................................................................................................................................................231289.002890033000701159703700000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATAT........................................................................................................................................................................221186.00186003210110864402100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................213162.6748810811199451247312154104000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................23266.0013200851024018751000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19361.3318400212713562641000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................20350.671520033123571614952001000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................23350.671520001009061000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATA.........................................................................................................................................................................21149.004900150000116110600000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................24343.331300000007852000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................18339.001170000610514001000000
..................................................................................................................................................................................................................................................GTGGCTGTTCTTTTT..............................................................................................15318.67560000000027281000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21318.3355000550000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGT.....................................................................................................15315.00450000000012302010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................23313.33400000002119000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................24312.67380000002117000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGAT..........................................................................................................................................................................2018.00800100000320200000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................2237.3322000000128101000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAA......................................................................................................................................................................2417.00700100000320100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTT....................................................................................................1632.67800000010052000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................2032.67800053000000000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2222.50500040001000000000
........................................................................................................................................................................................TTATTG--------------------------------AAAAACT--CCTA....................................................................................................................1712.00200000000020000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAAA.....................................................................................................................................................................2512.00200000000200000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2131.33400000022000000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................2031.33400030010000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................2421.00200000011000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAC......................................................................................................................................................................2411.00100000000010000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATATTAT...................................................................................................................................................................2711.00100000000010000000
......................................................................................................................................AA---CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................2111.00100000010000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATAA........................................................................................................................................................................2211.00100100000000000000
...................................................................................................................................................................GGAACTTCTGCTGCTGATATA.......................................................................................................................................................................2111.00100000000100000000
..................................................................................................................................................................................................................................................GTGGCTGTTCTTTTTG.............................................................................................1621.00200000000020000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAT......................................................................................................................................................................2411.00100100000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC...........................................................................................2511.00100010000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGA...........................................................................................................................................................................1911.00100100000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGG...........................................................................................................................................................................1911.00100100000000000000
................................................................................................................................................................CAGGGAACTTCTGCTGCTGATAT........................................................................................................................................................................2311.00100000000000100000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATATT.....................................................................................................................................................................2511.00100000000100000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................2030.67200200000000000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.............................................................................................2230.67200000002000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2130.67200020000000000000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................1830.67200010010000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................2230.67200010010000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAAA.............................................................................................2340.50200000011000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................2420.50100100000000000000
dm3
ATCA---TT----------ATTT-AATTTT-TTT--T----TTTTTT-------------------------------------------------------------------------GGCAC---ACGAATAA---CCA-TGCCGTTT--TTAACCCAAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------AAAAACT--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22320801.006240300008135722249235251300000010000000000000000000000000000000000000500000000000000000000000020472170000000000000000000000000110000000000000000000000000000100000000000000000000000010000000000000000000000100000000000000000000000010015459211244212162759343046154161800002000000000000000000000000000000000197080077012300000000637004648179130060059000010003175384212536104243868269366685913240
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATA.......................................................................................................................................................................23114804.00148040000001091822520000000000000000000000020000000000000000000000000000000000000000000010003566735100542204010004004000219110014145435579001801213890020001000000200000000001024967614049100010000000000000000000200000100000000001000000000000100000000000000000022001711900040000421100000000000000010000100000010001000000000000000004567000100200000000010000000010000000010010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2134534.671360400003046283290234340100000000000000000000000000000000000001000020000000000000000000000000015020000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000110033120213534787185631510020300000000000000000000000000000000000000043028028049000000004601738273180020016000000014114203192122726892863001423102157210
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATAT........................................................................................................................................................................2212093.002093000000841510000000000000000000000008300000000000000000000000000000000000000000000006158915685150100012000001001200002849000484064000000000000000000000000121477130000000000000000000000000000000000000000000000000000000000000000000000000000015041002000020900000000000000000000000000000000000000000000000005151300000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................203778.672336000000415183400000000000000000000000000000000000000000000001000000000000000000000000001410000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000300000000000000000000000000116410359327647014400000000000000000000000000000000000000117050705000010004796813404002000000031024081110015011117437113172927090
.................................................................................................................................................................AGGGAACTTCTGCTGCTGAT..........................................................................................................................................................................201426.0042600000000100000000000000000000000004020000000000000000000000000000000000000000000000000310000000000000000000000000000300000000000000000000000002400000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001100000000000000001000000000000000000000000000000005100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................193418.331255000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000100205110201100080000000000000000000000000000000000000003010310000000003846242015000010000011000100100000002641223295323030
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232281.005620000003121360000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004203249014500200000000000000000000000000000000000000010002000000000003298700000000000000001003000030000003690011010
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAT......................................................................................................................................................................241269.00269000000330000000000000000000000000010000000000000000000000000000000000000000000000732541350000000000000007000011900050015000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000071000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................233152.334570000000901000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003014002000000000000000000000000000000000000000201010000000000112630600000000000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATA.........................................................................................................................................................................211139.00139000000100000000000000000000000000032000000000000000000000000000000000000000000000067955000000000000000000000000040000000000000000000000000000614000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000042500000000000000000000000000000000100000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................223125.00375000020241847730000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140004063004000000000000000000000000000000000000000301040200000000011300000101000000001101000010000101200000010
................................................................................................................................................................AAGGGAACTTCTGCTGCTGATATA.......................................................................................................................................................................241117.00117000000140000000000000000000000000000000000000000000000000000000000000000000000000472100240000000000000100000083000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000
......................................................................................................................................AA---CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................211112.00112000000230000000000000000000000000000000000000000000000000000000000000000000000000314303000000000000000000000860005001000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015000000000000000000000000000000000000000000
.....................................................................................................................................TAA---CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................221103.0010300000000000000000000000000000000000000000000000000000000000000000000000000000000016180325000000000000000000000200001090000000000000000000000000212300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000
..................................................................................................................................................................GGGAACTTCTGCTGCTGATATA.......................................................................................................................................................................22184.0084000000240000000000000000000000000000000000000000000000000000000000000000000000000271100220000000000000001000005000000000100000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................23371.0021300000012894000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000251133034410008000000000000000000000000000000000000000100101001300000000016200000300000000000000000000000001170000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................22370.332110000001459311310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130500010000000000000000000000000000000000000001000000000000000571400000000000000000000000000000000110000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATAA......................................................................................................................................................................24153.00530000000000000000000000000000000000100000000000000000000000000000000000000000000005502400000000000000000000000000007000000000000000000000000014030000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000
.......................................................................................................................................A---CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................20151.00510000000000000000000000000000000000000000000000000000000000000000000000000000000002700090000010000000000000003000200300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................18350.33151000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200200000000000000000000000000000000000000010000010000000001112310000000000000000000000000000011240000000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................18347.67143000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003010150800000000000000000000000000000000000000000000000101000000000971400000000000000000000000000000000110000000
....................................................................................................................................ATAA---CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................23147.00470000001000000000000000000000000000000000000000000000000000000000000000000000000002543060000000000000000000004000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
................................................................................................................................................................AAGGGAACTTCTGCTGCTGATAT........................................................................................................................................................................23139.00390000000010000000000000000000000000000000000000000000000000000000000000000000000008804500000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATC.......................................................................................................................................................................23138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000010000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................24335.00105000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002211310202003000000000000000000000000000000000000000809012040000000001000000301000000000000010000000000000000000
............................................................................................................................................CA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................18130.00300000000000000000000000000000000000000000000000000000000000000000000000000000000001100020000000000000000010002000200700000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21329.67890000000310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020004153002000000000000000000000000000000000000000102000000000000057400000000000000000110000000000010010000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................22325.007500001082812500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000000100000000000009400000000000000000000000000000000100000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATATT.....................................................................................................................................................................25120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGA...........................................................................................................................................................................19120.00200000000000000000000000000000000000500000000000000000000000000000000000000000000001000000000000010000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATG.......................................................................................................................................................................23119.0019000000011100000000000000000000000000000000000000000000000000000000000000000000000111040000000000000000000010000100500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
..................................................................................................................................................................GGGAACTTCTGCTGCTGATAT........................................................................................................................................................................21117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000001401020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................21316.6750000010515131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000004000000000000000000000000000000001000000000
.................................................................................................................................................................AGGGAACTTCTGCTGCTGATATT.......................................................................................................................................................................23116.0016000000210000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000002000000100000000000000000000000003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
...........................................................................................................................................CCA-TGCCGTTT--TTAACCCA..............................................................................................................................................................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000200160000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................21313.67410000202427000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000015700000000000000000000000000000000000000000
................................................................................................................................................................AAGGGAACTTCTGCTGCTGATA.........................................................................................................................................................................22112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................22311.673500000001001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010006000000000000000000000000000000000000000000000000000000000000014100000000000000000000000000000000100000000
droEug1
ATCA---TT----------CGTT-TTGTTT-TTT-GT----TTT-AT-------------------------------------------------------------------------ATTTG---ACAAACAA---CCA-TGCCGTTT--TTAACCCCAGGGAACCTCTGCTGTTGATATATAATCA--------------------------------GGAAACT--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCATCGATTTGTCATCTGTG---GCATG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotal
No Reads
droBia1
ATCAG---A----------CGTT-TAGTTC------------T-----------------------------------------------------------------------------CCCTG---ACAAGTAT---CTA-TTCCGTTC--TCAACCCCAGGGAACTTCTGCTGCTGATATATTAACT--------------------------------A-AAG-----CTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTG---GCACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotal
No Reads
droTak1
ACCAG---T----------CGTT-TT-----------------------------------------------------------------------------------------AGTTTATCTG---ACAAACAC---CCA-TTCCGTTT--TTAACCCCAGGGAACTTCTGCTGCTGATATATTATTG--------------------------------A-AAACT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAT-TCCAACGATTTGTCATCTGTG---GCATG------------------CATTT------GTG-----------TCAACTSizeHit CountTotal NormTotal
No Reads
droEle1
ATCAAAGCG---GCCAAT-ATT---TGTTT------------TC-----------------------------------------------------------------------ATT-TTCCCG---ACAAATAC---CCA-TTCCGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCA--------------------------------A-AAACT--TTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTCAAG-TCCAGCGATTTGTCATACAGG---GAACG------------------GATTT------GTG-----------TCACCTSizeHit CountTotal NormTotal
No Reads
droRho1
ATCAAAG-------------CTC-TAGTTT-TAT--T----TT-----------------------------------------------------------------------------TCCTG---ACAAATAC---CAA-GTCTGTTT--TTAACCACAGGGAACTTCTGCTGCTGATATATTATCG--------------------------------A-AAACT--TTTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAGCGATTTGTCATCCAGG---AAACG------------------CATTT------GTG-----------TCACCTSizeHit CountTotal NormTotal
No Reads
droFic1
ATCAA---T----------GTTT-TTGTTT-TTC-TT----TTCGTT-------------------------------------------------------------C-------GT--ATCTG---ACAAACAT---CCA-TTCCGTTT--TTAACCCTAGGGAACTTCTGCTGCTGATATATTATCG--------------------------------A-AAACT--CGTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGTTAAG-TCCAGCGATTTGTCATCTGCG---GCACG------------------CATTC------GTG-----------TCTCCTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCAA---G------GCTCA-TTTGGGTTT--AT-AT----TTTCTTA------------------------------------------------------------------------GTGTG---ACA-TTTC---TTC-TACCGTGG--TTAGCCCCAGGGAACTGCTGCTGCTGATATATTATCA--------------------------------A-GAATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TTCAGCGATTTGTCATCAGCG---CGGCC------------------TCAGT------GTA-----------TCATCTSizeHit CountTotal NormTotal
No Reads
droAna3
AGCCAAA--CCCGAGAATGT-TCTGTG--A---T-----TTTTCGT-T------------------------------------------------------------------------ATCCGACGACAAATAT----TA-TTCCGGTG--TTAGCCCCAGGGAACTGTTGCTGCTGATATATTATTCTC----------------------CCAAAAAAAAAATCA--CCTATATCACAGTGGCTGTTCTTTTTGGCTGCACCGACAAG-TTCACCGATTTGTCATTTGTG---GCACG------------------CATTT------GTG-----------TCACGTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22315043.3345130367447520074
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2133049.3391489790392028
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................223462.001386013860000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................203276.00828267920082
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................21357.6717301720001
.................................................................................................................................................................AGGGAACTGTTGCTGCTGATATA.......................................................................................................................................................................23143.00430348001
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................20337.0011101110000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21335.6710740670000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................23334.6710401040000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................23333.671013980000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19317.33528390023
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................23214.00282240011
.................................................................................................................................................................AGGGAACTGTTGCTGCTGATAT........................................................................................................................................................................22112.0012092100
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1938.67260260000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................2038.00245190000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................1836.00180180000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................1836.00180180000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................2036.00187110000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................2235.33160150001
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2134.33130130000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................2233.3310190000
........................................................................................................................................................................................TTATTCTC----------------------CCAAAAAAAAAATCA--CCTA....................................................................................................................2713.003030000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................2433.009170010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGT............................................................................................2422.505050000
.................................................................................................................................................................AGGGAACTGTTGCTGCTGAT..........................................................................................................................................................................2012.002020000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................1932.006330000
.................................................................................................................................................................AGGGAACTGTTGCTGCTGATA.........................................................................................................................................................................2112.002020000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1931.675050000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2231.675050000
........................................................................................................................................................................................TTATTCTC----------------------CCAAAAAAAAAATCA--CCT.....................................................................................................................2611.001010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................1931.003030000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................2131.003030000
................................................................................................................................................................CAGGGAACTGTTGCTGCTGATATA.......................................................................................................................................................................2411.001010000
.................................................................................................................................................................AGGGAACTGTTGCTGCTGATAC........................................................................................................................................................................2211.001010000
...................................................................................................................................AATAT----TA-TTCCGGTG--TTAGCCCC..............................................................................................................................................................................................2311.001010000
.................................................................................................................................................................AGGGAACTGTTGCTGCTGATATT.......................................................................................................................................................................2311.001010000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................1830.672020000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC..............................................................................................2230.672020000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................2330.672020000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................2130.672020000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................2420.501010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA.............................................................................................2330.331010000
droBip1
AGCCAAG-ACCCAAGAA----TT-GTG--A---T-----TTTTCGC-C------------------------------------------------------------------------ATCCGAC-AGATATTA---TTA-TTCCGGTG--TTAACCCCAGGGAACTGTTGCTGCTGATATATTATACTT------------------TCGA--------ACTATCT--CCTATATCACAGTGGCTGTTCTTTTTGGTTGCACCGTCAAG-TTCAACAATTTGTCATCTGTG---GCACG------------------AATTT------GTGGC-------A-TCACCTSizeHit CountTotal NormTotal
No Reads
dp5
AGCCAAG-------GAA----TC-GCGTT-------------------------------------------------------------------------GTGCAGTGCTTCCAGT--TACTG---ACAAATCC---CCG-TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCAC----------------------CCATCTTT-GACATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCG------------------CATTC------G-----------------CCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22338201.331146040681510770178307000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2136091.0018273012371700029205000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................2231760.0052800452724000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................203403.001209013410741000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232249.004980794190000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................213194.005820505770000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................213169.33508025060000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................233159.004770124641000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................233100.003000222770001000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATATA.......................................................................................................................................................................23180.0080054802700000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................20362.00186001842000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................20340.001200106140000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................22330.339107840000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19327.6783024590000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................24226.505300530000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................22324.677406680000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20317.0051032190000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................23313.674108330000000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATAT........................................................................................................................................................................22113.001300120100000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................24310.673206260000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................22310.333109220000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................1938.332502230000000
........................................................................................................................................................................................TTATCCAC----------------------CCATCTTT-GACATT--TCT.....................................................................................................................2518.0080050300000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2138.002401230000000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1937.6723010130000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................1837.002108130000000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATAC........................................................................................................................................................................2216.0060060000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................2135.331600160000000
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................1835.001503120000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................2424.5090090000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................2434.001202100000000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATA.........................................................................................................................................................................2114.0040030100000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2224.0080710000000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATATC.......................................................................................................................................................................2313.0030010000020
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................2333.0090180000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................2332.0060230001000
.....................................................................................................................................TCC---CCG-TGCCGTGTCCCCAACCGC..............................................................................................................................................................................................2412.0020020000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................2132.0060150000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG............................................................................................2412.0020110000000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGA...........................................................................................................................................................................1912.0020000000020
.................................................................................................................................................................AGGGAACCGCTGCTGCTGAT..........................................................................................................................................................................2012.0020000101000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................1931.6750050000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTT.................................................................................................1831.6750500000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.............................................................................................2121.5030120000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTCC..............................................................................................2231.3340040000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.............................................................................................2231.3340310000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................2531.3340040000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTC...............................................................................................2231.0030030000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2131.0030030000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGGAA.........................................................................................2711.0010100000000
....................................................................................................................................ATCC---CCG-TGCCGTGTCCCCAACCGC..............................................................................................................................................................................................2511.0010010000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGGC...........................................................................................2511.0010010000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC............................................................................................2221.0020020000000
........................................................................................................................................................................................TTATCCAC----------------------CCATCTTT-GACATT--TCTA....................................................................................................................2611.0010000100000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATATTC......................................................................................................................................................................2411.0010000000010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..............................................................................................2231.0030020001000
droPer2
AGCCAAG-------GAA----TC-GCGTT-------------------------------------------------------------------------GTGCAGTGCTTCCAGT--TACTC---ACAAATCC---CCG-TGCCGTGTCCCCAACCGCAGGGAACCGCTGCTGCTGATATATTATCCAC----------------------CCATCTTT-GACATT--TCTATATCACAGTGGCTGTTCTTTTTGGTTGCACGGCCAAG-TCCAACGATTTGTCATCTCCGCCGCCGCG------------------CATT----------------------CACC-SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................223146.00438941300115
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................21325.00758620005
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21314.67440440000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATAT........................................................................................................................................................................22112.00121002000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATATA.......................................................................................................................................................................2318.008404000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................2325.0010070003
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2035.0015680001
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................2033.009090000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATATAA......................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2221.002020000
.................................................................................................................................................................AGGGAACCGCTGCTGCTGATA.........................................................................................................................................................................2111.001001000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................1931.003030000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................2030.672020000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGA............................................................................................2220.501010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................2230.331010000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1930.331010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................2330.331010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................2230.331010000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1930.331010000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2230.331010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................2030.331100000
droWil2
AACAA---C----------AACA-A------------------C------------------------AACACATTCAAAATATTAACAAAAATATTATTTAGTGAAGTGTTTT--------TT---------------AAA-GTTTTTGT--TTAACCGCAGGGAACTGTCGCTGCTGATATATATA-TATTAT-TGTTATATATAATTTAAA-------AATGATTT--TCTATATCACAGTGGCTGTTCTTTTTGGTTTTACGATCATT-TTCAACAACTTTATTTTTAGA---TTTCT------------------CTGTT------TTA-----------CCGTTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22335155.671054670180701036555
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2138217.002465103441243042
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2031168.673506059534411
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................2331099.333298010032880
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATA.......................................................................................................................................................................231333.003330213300
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................193320.009600609504
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................243217.006510506460
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................223189.675690405650
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATAT........................................................................................................................................................................221136.001360101350
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................183128.333850303820
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................23283.501670601610
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21370.3321101430680
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATA.........................................................................................................................................................................21162.0062010610
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA...........................................................................................25346.001380001380
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................18345.001350101340
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................23341.671250001250
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................22340.331210101200
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................23332.3397000970
.................................................................................................................................................................AGGGAACTGTCGCTGCTGAT..........................................................................................................................................................................20119.0019000190
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................22318.6756000560
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................20316.00480310170
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATAA......................................................................................................................................................................24111.0011000110
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20310.33310120190
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTA...............................................................................................2139.3328010270
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2238.6726000260
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................2437.3322000220
...............................................................................................................................................................................................................................TGATTT--TCTATATCACAGTGGC........................................................................................................2217.00700070
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1936.0018000180
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................2134.6714000140
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................2134.3313000130
..................................................................................................................................................................GGGAACTGTCGCTGCTGATATA.......................................................................................................................................................................2214.00400040
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................2433.6711000110
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................2423.50700070
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAA..............................................................................................2243.2513000130
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATT.......................................................................................................................................................................2313.00300030
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................1932.67807010
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTTA.............................................................................................1932.67800080
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2222.50500050
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATAT......................................................................................................................................................................2412.00200020
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATC.......................................................................................................................................................................2312.00200020
............................................................................................................................................AA-GTTTTTGT--TTAACCGC..............................................................................................................................................................................................1812.00200020
.....................................................................................................................................................................AACTGTCGCTGCTGATATA.......................................................................................................................................................................1912.00200020
.................................................................................................................................................................AGGGAACTGTCGCTGCTGA...........................................................................................................................................................................1912.00200020
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................1932.00600060
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................1831.67500050
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA............................................................................................2231.33400040
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTT.................................................................................................2031.33400040
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................2331.33402020
.................................................................................................................................................................AGGGAACTGTCGCTGCTGATATG.......................................................................................................................................................................2311.00100010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................2131.00300030
..................................................................................................................................................................GGGAACTGTCGCTGCTGAT..........................................................................................................................................................................1911.00100010
..............................................................................................................................................................................................................................ATGATTT--TCTATATCACAGTGGT........................................................................................................2311.00100010
...............................................................................................................................................................................................................................TGATTT--TCTATATCACAGTGGT........................................................................................................2211.00100010
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.............................................................................................2121.00200020
..................................................................................................................................................................GGGAACTGTCGCTGCTGATAT........................................................................................................................................................................2111.00101000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTGGT...........................................................................................2211.00100010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC...........................................................................................2531.00300030
....................................................................................................................................................................................................................................T--TCTATATCACAGTGGCTGTTCT..................................................................................................2311.00100010
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG............................................................................................2311.00100010
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT...........................................................................................2311.00100010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC............................................................................................2431.00301020
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTGA.............................................................................................2330.67200020
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................2030.67200011
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTA.............................................................................................2130.67200020
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................2330.67200020
droVir3
AACGT---T----------GATT-TC----------------T---TA------------AATTGTGAAAATTGAATA-AATA---------------------------T------T--TGCTG---ACAAATTTCTTATG-TGCTATGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTGTATAGATTATAT--------------------------CGAT--TCCATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAATC-CACAACAATTTGTCAGCCGAA---A---GTACTTTTAT-TATTAACTAACTT------GTGCAA---TTTGTTCACTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................22334949.671048490030299170000000000000000000000000000000000001433193312825233385284224634757247948683020205523572021149061432062301156613991044884415060934242427422502272
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2135932.671779800754630000000000000000000000000000000000004141814512435630533860650910478455998076453301979104008216197622010020370688662600610
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................2333316.00994800132000000000000000000000000000000000000001271159533527618240242077764140150644411018770020102435340001012146562221
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATATA.......................................................................................................................................................................2311766.00176600025000000011013000000000000000010580227318737200009261810000001000000300000022333100000002197510158101
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................243570.00171000045100000000000000000000000000000000000001118204955194976180126759060000392000000625010000715453
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................203518.001554006361000000000000000000000000000000000000135111015161836316666384439000199000000273343000000369284137137
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................223494.671484000109600000000000000000000000000000000000000041101311918233616281800015100100046900010158906
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232359.007180001670000000000000000000000000000000000000011511152472715352218151200039000000151398200000664232819
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................233179.3353800164000000000000000000000000000000000000001710221517251013134760002200000014191120000005435251824
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................253126.6738000027000000000000000000000000000000000000000851212442949532731190009200000000500100110000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATAT........................................................................................................................................................................22192.009200010000000000000000000000000000001112600000641112000001000000000001210000001251033
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................19350.33151001180000000000000000000000000000000000000002221356410994010170010001260000006822110
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................21335.3310600098000000000000000000000000000000000000000000000001001000510000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA............................................................................................24329.33880001000000000000000000000000000000000000000013244123102000000000052190000011413334
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................23328.3385001440000000000000000000000000000000000000100011120362330001300000000000000021100
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................22326.0078000140000000000000000000000000000000000000001103120510120000000000421300000067924
........................................................................................................................................................................................CTGTATAGATTATAT--------------------------CGAT--TCCA....................................................................................................................23126.002600000000000000000000000000000000601514000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................18321.0063000500000000000000000000000000000000000000010000142112200020000001013000000102268
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................20317.005100050000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................22316.334900080000000000000000000000000000000000000000220220100210006000000013000000210052
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................21311.333400321000000000000000000000000000000000000000200001010100000200000000100000020000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG............................................................................................22111.00110002000000000000000000000000000000000000000001011000001000000000000100000020110
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................2429.501900018000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA............................................................................................2439.00270003000000000000000000000000000000000000000221112032020000500000000000000001110
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT..............................................................................................2337.67230010000000000000000000000000000000000000010031213121003010100000000100000000100
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................1837.00210006000000000000000000000000000000000000000010000010010000010000011400000031010
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT...........................................................................................2317.0070002000000000000000000000000000000000000000000000010000000000000001100000010100
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGA............................................................................................2426.50130002000000000000000000000000000000000000000000001000000000000000002400000003010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC............................................................................................2436.00180008000000000000000000000000000000000000000000200011101000100000000000003000000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATATAA......................................................................................................................................................................2416.0060000000000000000000000000000000020000100000000000000000000000000000000000001200
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTC...................................................................................................1735.67170000000000000000000000000000000000000000000000000010001000000000002400000030222
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................2225.50110006000000000000000000000000000000000000000000010000000000000000000300000010000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.............................................................................................2335.33160002000000000000000000000000000000000000000001000010010000000000031100000102021
........................................................................................................................................CTTATG-TGCTATGT--TTAACCGC..............................................................................................................................................................................................2215.0050000000000000000000000000000000010010200000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................2035.00150007000000000000000000000000000000000000000010100000000000000000000100000011102
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATA.........................................................................................................................................................................2115.0050000000000000000000000000000000000010100000000001000000000000000000100000000100
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA............................................................................................2434.00120000000000000000000000000000000000000000000000000000000000000000033000000110121
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC............................................................................................2433.67110000000000000000000000000000000000000000000031100012001000200000000000000000000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATATACTGTATG................................................................................................................................................................3013.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTGCTGCTGC..............................................................................................................................................................................1613.0030000000000000000000000000000000000000000000210000000000000000000000000000000000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGAT..........................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000010010000000000000000000000000100
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................2033.0090005000000000000000000000000000000000000000010000000000000100000000000000001001
.......................................................................................................................................TCTTATG-TGCTATGT--TTAACCGC..............................................................................................................................................................................................2313.0030000000000000000000000000000000000000200001000000000000000000000000000000000000
......................................................................................................................................TTCTTATG-TGCTATGT--TTAACCGC..............................................................................................................................................................................................2413.0030000000000000000000000000000000010011000000000000000000000000000000000000000000
.........................................................................................................................................TTATG-TGCTATGT--TTAACCGC..............................................................................................................................................................................................2113.0030000000000000000000000000000000000000200000100000000000000000000000000000000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.............................................................................................2233.0090008000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000010010
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC...........................................................................................2312.0020001000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................GCAGGGAACTGCTGCTGCTGATA.........................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000001001
................................................................................................................................................................CAGGGAACTGCTGCTGCTGATATA.......................................................................................................................................................................2412.0020000000000000000000000000000000000000100000000000000000000000000000000000010000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGA...........................................................................................................................................................................1912.0020000000000000000000000000000000000000000000010000000000000000000000100000000000
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................1932.0060013000000000000000000000000000000000000000100000000000000000000000000000000001
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTAC.............................................................................................2332.0060001000000000000000000000000000000000000000000100020010000100000000000000000000
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATATT.......................................................................................................................................................................2312.0020000000000000000000000000000000010000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................2231.6750000000000000000000000000000000000000000000000010030000000000000000000000000010
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTACC...........................................................................................2531.6750000000000000000000000000000000000000000000000000001100000300000000000000000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC............................................................................................2221.5030002000000000000000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.............................................................................................2121.5030001000000000000000000000000000000000000000000000000000000200000000000000000000
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTAC..............................................................................................2231.3340002000000000000000000000000000000000000000000001000000000000000000100000000000
droMoj3
AGCA---TT----------ATTT-T-----------------TCGC-CAATTGCCAAATATAAAGTGAAACATGAGCACAGTA---------------------------TT--------CGCAG---ACATATATCCAGAGAGATTGCGT--TTAACCGCAGGGAACTGCTGCTGCTGATATACTATATGTATT-TGT--------------------------CAGTACTCTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCAAATAGCCAACAATTTGTC---TGTG---AAATA------------------AATCTTGAATAGTG-----------TTATCTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................223175659.67526979301005269462
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................21371420.67214262141002142425
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.............................................................................................2339565.33286966000286900
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2035461.67163853000163802
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTC..............................................................................................2234979.00149371000149360
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTC...............................................................................................2131153.673461000034610
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC............................................................................................243749.332248000022480
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTG.............................................................................................232623.501247100012442
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTC................................................................................................203612.001836000018360
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTT..............................................................................................213393.671181200011790
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTT.................................................................................................193276.6783001008281
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.............................................................................................233230.3369100006910
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGG............................................................................................221142.0014200001420
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTT...............................................................................................203132.3339710003960
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTG.............................................................................................22295.5019100001910
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTT..............................................................................................20389.6726900002690
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTA..............................................................................................22389.6726900002690
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTGG............................................................................................23186.00860000860
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGT...........................................................................................23180.00800000800
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATATA.......................................................................................................................................................................23175.007501700580
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.............................................................................................23368.6720600002060
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTT..............................................................................................19365.3319600001960
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...........................................................................................25353.6716100001610
...............................................................................................................................................................................................................................................ACAGTGGCTGTTCTTTTT..............................................................................................18347.6714300001430
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTG...............................................................................................21346.6714000001400
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGG............................................................................................24141.00410000410
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTTGC............................................................................................24234.50690000690
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTT................................................................................................21331.33940000940
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTT...............................................................................................19331.33940000940
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGC...........................................................................................23130.00300000300
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTG..............................................................................................22328.67860000860
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTT...............................................................................................18328.33850000850
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCT..................................................................................................18326.33790000790
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTT..........................................................................................24126.00260000260
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.............................................................................................22316.00480000480
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATAT........................................................................................................................................................................22115.00150401100
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTC.................................................................................................19314.67440000440
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGGTC..........................................................................................24112.00120000120
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTT................................................................................................19311.00330000330
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTG.............................................................................................21210.50210000210
..........................................................................................................................................................................................................................................ATATCACAGTGGCTGTTCTTTT...............................................................................................22310.00300000300
..............................................................................................................................................................................................................................................CACAGTGGCTGTTCTTTTTC.............................................................................................2039.33280000280
.............................................................................................................................................................................................................................................TCACAGTGGCTGTTCTTTTTGC............................................................................................2229.00180000180
.................................................................................................................................................................AGGGAACTGCTGCTGCTGATA.........................................................................................................................................................................2118.008010070
............................................................................................................................................................................................................................................ATCACAGTGGCTGTTCTTTTC..............................................................................................2137.33220000220
droGri2
AAAA---TG----------AGTA-ATGTTA------------TC-------------------------------------------------------------AACC-----------GCTGC---ATAAATTC-ACCAA-TGCTATGT--TTAACCACAGGGAACTGCTGCTGCTGATATACAACCA---------------------------TATTTATACACG--ACTATATCACAGTGGCTGTTCTTTTTGGTTGCATCGCCATT-TGCAACGATTTGTCAGT---G---TTTTA-----TTCTATTTTATTTTACGT------GTGTTTTTTTTTG-TTAACTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTTT..............................................................................................2262.5015105
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTTT...............................................................................................2161.831129
...........................................................................................................................................................................................................................................TATCACAGTGGCTGTTCTTT................................................................................................2060.33202

Generated: 10/20/2015 at 07:35 PM