ID:

dya-mir-4

 Coordinate:

2R:13623914-13623994 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.6 -23.6 -23.6

Flybase annnotation

pre_miRNA [Dyak\mir-4-RM]; utr3 [utr3_minus_3617]; miRNA [Dyak\miR-4-RA]

No Repeatable elements found

Sense Strand Reads

TCAACATGCTCAGTGAAGTTGCAAGTGAAATTAATCAGATACTGGGGCAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATTACGGGTCAAGAAATCGAGTTAAGTGTTCCCCCAA

***********************************************..((((((((.((((((..((((.(((.(((.((((((..........))).))).))).))).))))..)))))).))))))))...********************************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 V046

embryo

 M043

female body

 V058

head

 V052

head

 V120

male body		 M026

head
..................................................................................................ATAAAGCTAGACAACCATTGAA............................................................. 22 0 1 43469.00 43469 40260 3149 30 23 3 4 0
..................................................................................................ATAAAGCTAGACAACCATTGAAG............................................................ 23 0 1 13202.00 13202 11436 1752 13 1 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGA.............................................................. 21 0 1 11677.00 11677 9630 2000 27 13 4 3 0
..................................................................................................AGAAAGCTAGACAACCATTGAA............................................................. 22 1 1 5306.00 5306 5302 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAA............................................................ 23 1 1 3785.00 3785 3453 328 1 1 2 0 0
..................................................................................................ATAAAGCTAGACAACCATTG............................................................... 20 0 1 1936.00 1936 1756 174 4 2 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAG............................................................ 22 0 1 1589.00 1589 1346 242 1 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 1569.00 1569 1568 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGA.............................................................. 21 1 1 1289.00 1289 1287 2 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAA............................................................. 22 1 1 1128.00 1128 1128 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAT............................................................ 23 1 1 988.00 988 941 46 0 1 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAC............................................................ 23 1 1 701.00 701 678 23 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGT........................................................... 24 0 1 574.00 574 509 65 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGT........................................................... 23 0 1 559.00 559 483 76 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 436.00 436 436 0 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAA............................................................. 22 2 1 404.00 404 404 0 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 25 0 1 375.00 375 67 307 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAT................................................................. 18 0 1 362.00 362 362 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAC............................................................. 22 1 1 357.00 357 352 5 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 352.00 352 352 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAA............................................................. 22 1 1 315.00 315 312 3 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAG............................................................ 23 1 1 294.00 294 294 0 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGA.............................................................. 21 1 1 262.00 262 262 0 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 24 0 1 261.00 261 45 216 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAA............................................................. 23 0 1 255.00 255 250 4 1 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 24 0 1 254.00 254 201 52 1 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAA............................................................. 21 0 1 246.00 246 237 8 1 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 0 1 245.00 245 202 41 1 0 0 0 1
..................................................................................................ATAAAGCTAGACCACCATTGAA............................................................. 22 1 1 215.00 215 192 23 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTG............................................................... 20 1 1 210.00 210 210 0 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAA............................................................. 22 1 1 202.00 202 199 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAA............................................................. 22 1 1 142.00 142 133 9 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAG............................................................ 23 2 1 125.00 125 125 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAA............................................................. 22 1 1 122.00 122 121 1 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAA............................................................. 22 1 1 121.00 121 118 3 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 121.00 121 121 0 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 0 1 120.00 120 104 16 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAA............................................................. 22 1 1 118.00 118 112 6 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGA.............................................................. 21 2 1 116.00 116 116 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAG............................................................ 23 1 1 111.00 111 105 6 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAA............................................................. 22 1 1 105.00 105 104 1 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 0 1 104.00 104 66 37 0 1 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAG.................................................................................................. 21 0 1 97.00 97 53 41 0 0 0 0 3
..................................................................................................TTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 97.00 97 96 1 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAA............................................................ 23 2 1 94.00 94 94 0 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAA............................................................. 22 1 1 91.00 91 91 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAA........................................................... 24 2 1 90.00 90 89 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 90.00 90 90 0 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGC........................................................... 23 1 1 88.00 88 88 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAC................................................................. 18 1 1 87.00 87 87 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 85.00 85 84 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGC........................................................... 24 1 1 83.00 83 82 1 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGT................................................................................................ 23 0 1 83.00 83 47 35 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAT............................................................. 22 1 1 82.00 82 61 21 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGA.............................................................. 21 1 1 81.00 81 68 13 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAG............................................................ 23 1 1 81.00 81 80 1 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 79.00 79 79 0 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAA............................................................. 20 0 1 75.00 75 75 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGA.............................................................. 21 1 1 75.00 75 70 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAGA........................................................... 24 1 1 74.00 74 69 5 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAA............................................................. 22 1 1 71.00 71 68 3 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAA............................................................ 22 1 1 70.00 70 65 3 2 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGT........................................................... 24 1 1 65.00 65 64 1 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAA............................................................. 22 1 1 64.00 64 63 1 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAG............................................................ 22 1 1 64.00 64 64 0 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGA.............................................................. 22 0 1 63.00 63 60 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAG............................................................ 23 1 1 61.00 61 50 11 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAA............................................................. 22 1 1 57.00 57 56 1 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAG............................................................ 24 0 1 56.00 56 54 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACG............................................................ 23 1 1 56.00 56 45 10 0 1 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGA.............................................................. 21 1 1 55.00 55 55 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAG............................................................ 23 1 1 55.00 55 49 6 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAA............................................................. 22 1 1 53.00 53 53 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAC............................................................. 22 2 1 51.00 51 51 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAG............................................................ 23 1 1 50.00 50 50 0 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGA.............................................................. 20 0 1 47.00 47 44 2 1 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGA.............................................................. 21 1 1 46.00 46 44 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAA............................................................. 22 1 1 43.00 43 39 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGA............................................................. 22 1 1 43.00 43 32 11 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTG............................................................... 20 1 1 39.00 39 39 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATT................................................................ 19 0 1 39.00 39 29 7 0 2 1 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAG............................................................. 22 1 1 39.00 39 33 6 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGG................................................................................................. 21 0 1 38.00 38 30 6 2 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAT............................................................ 22 1 1 37.00 37 32 4 1 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAA............................................................. 22 1 1 37.00 37 37 0 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAA............................................................ 23 3 1 36.00 36 36 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAC............................................................. 22 3 1 36.00 36 36 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAG............................................................ 23 1 1 33.00 33 31 2 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 33.00 33 32 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGA.............................................................. 21 1 1 33.00 33 32 1 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 32.00 32 27 5 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAC............................................................ 23 2 1 31.00 31 30 1 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAA............................................................. 22 1 1 31.00 31 26 5 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAA............................................................. 22 2 1 31.00 31 31 0 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAG............................................................ 22 1 1 31.00 31 31 0 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAT............................................................ 23 2 1 29.00 29 29 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAA............................................................. 22 2 1 29.00 29 29 0 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAG............................................................ 23 2 1 29.00 29 29 0 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 29.00 29 29 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAC............................................................. 22 2 1 28.00 28 28 0 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGAA............................................................. 26 0 1 27.00 27 27 0 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAAGT........................................................... 23 1 1 27.00 27 27 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGA.............................................................. 21 1 1 27.00 27 23 4 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGA.............................................................. 21 1 1 27.00 27 26 1 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGA.............................................................. 21 1 1 26.00 26 25 1 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAA............................................................. 22 1 1 26.00 26 23 2 0 1 0 0 0
..................................................................................................ATAAATCTAGACAACCATTGAAA............................................................ 23 2 1 26.00 26 26 0 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAA............................................................. 22 1 1 26.00 26 23 3 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAC............................................................ 22 1 1 26.00 26 25 1 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAA............................................................. 22 1 1 25.00 25 23 1 1 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGA.............................................................. 21 2 1 25.00 25 25 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCA............................................................. 22 1 1 25.00 25 0 25 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAAACATTGAA............................................................. 22 2 1 25.00 25 25 0 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAAG............................................................ 23 1 1 24.00 24 23 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAA............................................................. 22 1 1 24.00 24 18 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGAA............................................................. 22 1 1 24.00 24 15 9 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGAA............................................................. 22 1 1 23.00 23 21 2 0 0 0 0 0
..................................................................................................AGCAAGCTAGACAACCATTGAA............................................................. 22 2 1 23.00 23 23 0 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAG............................................................ 21 0 1 23.00 23 22 1 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 23.00 23 23 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGTA............................................................. 22 1 1 22.00 22 12 10 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAGGC................................................................................................ 22 1 1 22.00 22 22 0 0 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAA............................................................. 22 1 1 22.00 22 16 6 0 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAA............................................................. 22 1 1 22.00 22 16 6 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAG............................................................ 23 1 1 22.00 22 22 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGAA............................................................. 22 2 1 22.00 22 21 1 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGA.............................................................. 21 1 1 21.00 21 21 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTGAAA............................................................ 23 2 1 21.00 21 20 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACTATTGAA............................................................. 22 2 1 21.00 21 21 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAA............................................................. 22 1 1 21.00 21 17 4 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAA............................................................ 24 1 1 20.00 20 20 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAA............................................................. 22 1 1 20.00 20 17 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGATAACCATTGAA............................................................. 22 1 1 20.00 20 19 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAAAG............................................................ 23 1 1 19.00 19 18 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAC............................................................. 22 2 1 19.00 19 18 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAA............................................................ 23 2 1 18.00 18 18 0 0 0 0 0 0
...........................................................................................GACGATCATAAAGCTAGACAACCATTGAA............................................................. 29 3 1 18.00 18 18 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTG............................................................... 20 1 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCAACATTGAA............................................................. 22 2 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGAA............................................................. 22 1 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAAG............................................................ 23 1 1 17.00 17 0 17 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGA.............................................................. 21 1 1 17.00 17 16 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGAA............................................................. 22 1 1 17.00 17 1 16 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGAA............................................................. 22 1 1 17.00 17 16 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGAAG............................................................ 23 1 1 17.00 17 14 3 0 0 0 0 0
...................................................................................................TGAAGCTAGACAACCATTGAA............................................................. 21 1 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTAA.............................................................. 21 1 1 17.00 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTAAACAACCATTGAA............................................................. 22 1 1 16.00 16 14 2 0 0 0 0 0
..................................................................................................ATAAAGGTAGACAACCATTGAA............................................................. 22 1 1 16.00 16 16 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAATT........................................................... 24 1 1 16.00 16 15 1 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGA.............................................................. 19 0 1 15.00 15 14 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGG.............................................................. 21 1 1 15.00 15 10 5 0 0 0 0 0
.................................................................................................CGTAAAGCTAGACAACCATTGAA............................................................. 23 1 1 15.00 15 15 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAATCATTGAA............................................................. 22 1 1 15.00 15 13 2 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACCATTGAAGA........................................................... 23 1 1 15.00 15 12 3 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAAGT........................................................... 24 1 1 15.00 15 15 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAT............................................................ 23 2 1 14.00 14 13 1 0 0 0 0 0
...............................................................CGTTGGTCGTCCAGCCTTAGGTG............................................................................................... 23 1 1 14.00 14 14 0 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAA............................................................. 21 1 1 14.00 14 14 0 0 0 0 0 0
..................................................................................................AGAAATCTAGACAACCATTGAA............................................................. 22 2 1 14.00 14 14 0 0 0 0 0 0
...................................................................................................TTAAGCTAGACAACCATTGAAG............................................................ 22 1 1 13.00 13 13 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAG............................................................ 23 1 1 13.00 13 0 13 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGAAG............................................................ 23 1 1 13.00 13 11 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAATGAA............................................................. 22 1 1 13.00 13 12 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTG............................................................... 20 1 1 13.00 13 10 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAAACATTGAA............................................................. 22 2 1 13.00 13 12 1 0 0 0 0 0
..................................................................................................ATCAAGCTAGACAACCATTGAAA............................................................ 23 2 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................AAAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 12.00 12 11 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACA............................................................ 23 2 1 12.00 12 11 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGAAAACCATTGAAA............................................................ 23 2 1 12.00 12 11 1 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAGT........................................................... 22 0 1 12.00 12 10 2 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 12.00 12 10 2 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGC................................................................................................ 23 1 1 12.00 12 12 0 0 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAAGT........................................................... 23 1 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................TGAAAGCTAGACAACCATTGAAA............................................................ 23 3 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGAAG............................................................ 23 1 1 12.00 12 9 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCCACCATTGA.............................................................. 21 2 1 12.00 12 12 0 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGAA............................................................. 24 0 1 12.00 12 12 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACCACCATTGAAG............................................................ 23 2 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGA.............................................................. 21 1 1 11.00 11 9 2 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAGT........................................................... 24 2 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTGA.............................................................. 21 1 1 11.00 11 10 1 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAT............................................................ 23 3 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGAAG............................................................ 23 1 1 11.00 11 7 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAAG............................................................ 23 1 1 11.00 11 10 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTAAG............................................................ 23 1 1 11.00 11 10 1 0 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAAG............................................................ 23 1 1 11.00 11 8 3 0 0 0 0 0
..................................................................................................ATAAGGCTAGACAACCATTGA.............................................................. 21 1 1 11.00 11 9 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTG............................................................... 20 1 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGGAG............................................................ 23 1 1 11.00 11 5 6 0 0 0 0 0
..................................................................................................ATAAAGCGAGACAACCATTGAA............................................................. 22 1 1 11.00 11 6 5 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAT............................................................ 23 2 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTAAA............................................................. 22 2 1 11.00 11 11 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGAA............................................................. 22 1 1 10.00 10 6 4 0 0 0 0 0
..................................................................................................ACAAAGCTAGACAACCATTGAAA............................................................ 23 2 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACCACCATTG............................................................... 20 1 1 10.00 10 9 1 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAA............................................................. 19 0 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGA.............................................................. 21 1 1 10.00 10 8 2 0 0 0 0 0
...............................................................CTTTGGTCGTCCAGCCTTAG.................................................................................................. 20 0 1 10.00 10 6 4 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGA.............................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0
............................................GGGCAGTTGCAATTAGTTT...................................................................................................................... 19 0 1 10.00 10 4 6 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTG............................................................... 20 1 1 10.00 10 8 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTCAA............................................................. 22 1 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................GTAAAGCTAGACAACCATTGA.............................................................. 21 1 1 10.00 10 9 1 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAAG............................................................ 23 2 1 10.00 10 10 0 0 0 0 0 0
...................................................................................................CAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATGGAA............................................................. 22 1 1 10.00 10 9 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAGG............................................................ 23 1 1 10.00 10 4 6 0 0 0 0 0
..............................................................TCCTTGGTCGTCCAGCCTTAGG................................................................................................. 22 1 1 10.00 10 10 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTTA.............................................................. 21 1 1 10.00 10 7 3 0 0 0 0 0
.....................................................................................................AAGCTAGACAACCATTGAAGT........................................................... 21 0 1 10.00 10 8 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGAGAACCATTGAA............................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0
................................................................TTTGGTCGTCCAGCCTTAGGTGA.............................................................................................. 23 0 1 9.00 9 1 8 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGA.............................................................. 21 1 1 9.00 9 8 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGT.............................................................. 21 1 1 9.00 9 5 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCTTTGAA............................................................. 22 1 1 9.00 9 8 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGAAG............................................................ 23 1 1 9.00 9 7 2 0 0 0 0 0
..................................................................................................AGAAACCTAGACAACCATTGAA............................................................. 22 2 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAAA........................................................... 24 3 1 9.00 9 9 0 0 0 0 0 0
..............................................................TGTTTGGTCGTCCAGCCTTAGG................................................................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGAAAC........................................................... 24 2 1 9.00 9 9 0 0 0 0 0 0
.................................................................................................CACAAAGCTAGACAACCATTGAA............................................................. 23 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................ATAAATCTAGACAACCATTG............................................................... 20 1 1 9.00 9 9 0 0 0 0 0 0
..............................................................TCCTTGGTCGTCCAGCCTTAGGTG............................................................................................... 24 1 1 9.00 9 9 0 0 0 0 0 0
..................................................................................................AGAAAGCCAGACAACCATTGAA............................................................. 22 2 2 8.50 17 17 0 0 0 0 0 0
..................................................................................................ATAAAGCTCGACAACCATTGAA............................................................. 22 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCGTTGA.............................................................. 21 1 1 8.00 8 5 3 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGA.............................................................. 21 1 1 8.00 8 5 3 0 0 0 0 0
.................................................................................................CATTAAGCTAGACAACCATTGAA............................................................. 23 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGACT............................................................ 23 2 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAACTAGACAACCATTGAAG............................................................ 23 1 1 8.00 8 6 1 1 0 0 0 0
...................................................................................................TAATGCTAGACAACCATTGAA............................................................. 21 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCCTTGA.............................................................. 21 1 1 8.00 8 0 8 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGA........................................................... 24 2 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGCCAACCATTGAAGT........................................................... 24 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACGACCATTGA.............................................................. 21 1 1 8.00 8 2 6 0 0 0 0 0
...............................................................CGTTGGTCGTCCAGCCTTAGGT................................................................................................ 22 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGAAG............................................................ 23 1 1 8.00 8 6 1 1 0 0 0 0
..................................................................................................ATAGAGCTAGACAACCATTGAAG............................................................ 23 1 1 8.00 8 6 2 0 0 0 0 0
..................................................................................................CTAAAGCTAGACAACCATTGAA............................................................. 22 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAACATTGAAA............................................................ 23 2 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCATTGAC............................................................. 22 2 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGAAG............................................................ 23 1 1 8.00 8 8 0 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGAA............................................................. 22 1 1 8.00 8 2 6 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTG............................................................... 20 2 2 7.50 15 15 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGAAAACCATTGAA............................................................. 22 2 2 7.00 14 14 0 0 0 0 0 0
..................................................................................................ATAATGCTAGACAACCATTG............................................................... 20 1 1 7.00 7 7 0 0 0 0 0 0
.......................................................................................................GCTAGACAACCATTGAAG............................................................ 18 0 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGAAG............................................................ 23 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................TTAAAGCTAGACAACCATTGAAC............................................................ 23 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATCGA.............................................................. 21 1 1 7.00 7 3 4 0 0 0 0 0
..................................................................................................ATATAGCTAGACAAACATTGAA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
....................................................................................................AAAGCTAGACAACCATTGAAA............................................................ 21 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................AGATAGCTAGACAACCATTGAAC............................................................ 23 3 1 7.00 7 7 0 0 0 0 0 0
.................................................................................................CATAAAGCTAGACAACCATTGAAT............................................................ 24 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................AGAGAGCTAGACAACCATTGAA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTGGACAACCATTGA.............................................................. 21 1 1 7.00 7 4 3 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTTAA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCCAGACAACCATTGAAG............................................................ 23 1 1 7.00 7 3 4 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCACTGAAG............................................................ 23 1 1 7.00 7 4 3 0 0 0 0 0
..................................................................................................AGAAAGCTAGCCAACCATTGAC............................................................. 22 3 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGA.............................................................. 21 1 1 7.00 7 5 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGAAG............................................................ 23 1 1 7.00 7 5 2 0 0 0 0 0
..................................................................................................ATAAAGCTAGGCAACCATTGA.............................................................. 21 1 1 7.00 7 7 0 0 0 0 0 0
...................................................................................................AAAAGCTAGACAACCATTGAAG............................................................ 22 1 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................AGAAAGCAAGACAACCATTGAA............................................................. 22 2 1 7.00 7 7 0 0 0 0 0 0
..................................................................................................ATGAAGCTAGACAACCATTGAAG............................................................ 23 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAATCATTGAAG............................................................ 23 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAAATATTGAA............................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0
...........................................................................................GACGATCATAAAGCTAGACAACCATTGA.............................................................. 28 3 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATAGA.............................................................. 21 1 1 6.00 6 5 1 0 0 0 0 0
...................................................................................................TAAAGCTAGACAACAATTGAAG............................................................ 22 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................AGAAACCTAGACAACCATTGAAG............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGAAG............................................................ 23 1 1 6.00 6 2 4 0 0 0 0 0
................................................................................................TCATAAAGCTAGACAACCATTGA.............................................................. 23 0 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAT............................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCATTGCAA............................................................ 23 2 1 6.00 6 0 6 0 0 0 0 0
..............................................................................................GATCATAAAGCTAGACAACCATTGA.............................................................. 25 0 1 6.00 6 6 0 0 0 0 0 0
....................................................................................................AGAGCTAGACAACCATTGAA............................................................. 20 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACTATTGAAA............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATTGAAGC........................................................... 24 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................AGCAAGCTAGACAACCATTGAAG............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAACCTAGACAACCATTGAAA............................................................ 23 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCAAGACAACCATTGA.............................................................. 21 1 1 6.00 6 6 0 0 0 0 0 0
...................................................................................................TAAAGCTCGACAACCATTGAAG............................................................ 22 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAGCCATTGAAG............................................................ 23 1 1 6.00 6 4 2 0 0 0 0 0
...................................................................................................TAAATCTAGACAACCATTGAAG............................................................ 22 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................AGAAATCTAGACAACCATTGA.............................................................. 21 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGATAGACAACCATTGA.............................................................. 21 1 1 6.00 6 0 6 0 0 0 0 0
..................................................................................................AGAAAGCTAGACAACCATT................................................................ 19 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTACACAACCATTGAA............................................................. 22 1 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................GGAAAGCTAGACAACCATTGAA............................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTA................................................................................................... 20 0 1 6.00 6 4 1 0 0 0 0 1
.....................................................................................................AAGCTAGACAACCATTGAAG............................................................ 20 0 1 6.00 6 5 1 0 0 0 0 0
..................................................................................................AGAATGCTAGACAACCATTGAA............................................................. 22 2 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATATAGCTAGACAACCAT................................................................. 18 1 1 6.00 6 6 0 0 0 0 0 0
..................................................................................................ATAAAGCTAGACAACCAGTGAAG............................................................ 23 1 1 6.00 6 5 1 0 0 0 0 0
..............................................................TCTTTGGTCGTCCAGCCTTAGGTGAT............................................................................................. 26 1 1 6.00 6 4 2 0 0 0 0 0
..................................................................................................AGCAAGCTAGACAACCATTGA.............................................................. 21 2 1 5.00 5 5 0 0 0 0 0 0
..................................................................................................ATAAAGCTATACAACCATTGA.............................................................. 21 1 1 5.00 5 4 1 0 0 0 0 0
..................................................................................................ATAAAGCGAGACAACCATTGA.............................................................. 21 1 1 5.00 5 3 2 0 0 0 0 0

Anti-sense strand reads

AGTTGTACGAGTCACTTCAACGTTCACTTTAATTAGTCTATGACCCCGTCAACGTTAATCAAAGAAACCAGCAGGTCGGAATCCACTGAAAAGACTAGTATTTCGATCTGTTGGTAACTTCAAGCAACACCGTAATCGTCGTGGTAATGCCCAGTTCTTTAGCTCAATTCACAAGGGGGTT

**********************************************..((((((((.((((((..((((.(((.(((.((((((..........))).))).))).))).))))..)))))).))))))))...*********************************************** 		Read size # Mismatch Hit Count Total Norm Total V058

head

 V046

embryo

 V052

head

 M056

embryo
.................................................................................................GTATTTCGATCTGTTGGTGGAT.............................................................. 22 3 1 1.00 1 0 1 0 0
............................................................TACGAAACCAGTAGGTCGGAAT................................................................................................... 22 3 2 0.50 1 1 0 0 0
.................................................................................................GTATTACGATCTGTTGGTTACG.............................................................. 22 3 2 0.50 1 1 0 0 0
.................................................................................................GTATTTCGATCTATTGGTTACT.............................................................. 22 2 3 0.33 1 1 0 0 0
................................................................................................AGTATGTCGATCTATTGGTAATT.............................................................. 23 3 3 0.33 1 0 1 0 0
................................................................................................AGTATTTCGATCTATTGGTATCT.............................................................. 23 2 3 0.33 1 0 0 0 1
................................................................................................AGTATTTCGATCTCTTGGTTCCT.............................................................. 23 3 3 0.33 1 0 0 1 0
................................................................................................AGTATTTCTATCTGTTGGTTTCT.............................................................. 23 3 3 0.33 1 1 0 0 0
................................................................................................AGTATTTCGATCTGTTGGTTTCT.............................................................. 23 2 3 0.33 1 0 0 1 0
................................................................................................AGTATGTCGATCTATTGGTAACT.............................................................. 23 2 3 0.33 1 0 0 0 1
................................................................................................AGTGTTTCGATCTGTTGGTTTCT.............................................................. 23 3 3 0.33 1 1 0 0 0
................................................................................................GGTATTTCGATCTGTTGGTTTCT.............................................................. 23 3 3 0.33 1 0 1 0 0
.......................................ATGACGCCGTCATCATTAATC......................................................................................................................... 21 3 4 0.25 1 1 0 0 0
.................................................................................................GTATTTCGATCTCTTGGTCTCT.............................................................. 22 3 4 0.25 1 0 1 0 0
.................................................................................................GTATTTCGACCTGTTGGTTTCT.............................................................. 22 3 4 0.25 1 1 0 0 0
.................................................................................................GTACGTCGATCTGTTGGTTACT.............................................................. 22 3 5 0.20 1 0 1 0 0
..................................................................................................TATTTCGATCTATTGTTAGCT.............................................................. 21 3 7 0.14 1 1 0 0 0
.................................................................................................GTATTCCGATCTGTTGGTTTCT.............................................................. 22 3 16 0.06 1 0 1 0 0
..................................................................................................TATTTCTATCTGTTGGTTTCT.............................................................. 21 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 2R:13623864-13624044 + dya-mir-4 Known_mirbase TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-T-----------T---------------A--ATCA-GAT------------------------------------A--CT-GGGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT--------------------AC-------------------------------------------------------------------GGGTC--------------------AAGAAATCGAGTTAAGTGTTCCCCCAA
droEre2 scaffold_4845:9748998-9749176 - der-mir-4 Known_mirbase TCAACATG------CACACT--------------GTGA----------AGT-TGCGAGTGAA--------A-A-----------C--------------------AA-AAG--------------------------------AT--A--CT-GTAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC-----------------------AA-------------------------------------------------------------------GAGTT--------------------AGCAAATCCAGTTAAGTGATCCCCTAA
droSec2 scaffold_1:13063476-13063653 - dse-mir-4 Known_mirbase TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-C------------------------------TTCA-AAT--------------------------------AT--T--CT-GTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------AAGTC--------------------AGGAAATCAAGTTAAGTGATCCCCAAA
droSim2 2r:16196018-16196195 - dsi-mir-4 Known_mirbase TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-C------------------------------TTCA-AAT--------------------------------AT--T--CT-GTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------AAGTC--------------------AAGAAATCAAGTTAAGTTATCACCAAA
dm3 chr2R:15548747-15548924 - dme-mir-4 Known_mirbase TCAACATG------CTCA----------------GTAA----------AGT-TGCGAGTGAA--------A-A-----------T-------------------TAA-AAT--------------------------------AT--T--AT-GGAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------GAGTC--------------------AAGAAATTATGTTAAGTGATCCCCAAA
droEug1 scf7180000409474:2396946-2397114 + TCAACAAG------CTAA----------------GTGAA---------AGT-TAAAAAG----------------------------------------------CA-AAAATAAAGAT-------------------------------CT-AAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------TC-------------------------------------------------------------------AAGCC----------------------------AAGTTAAGTGTTACCAAAA
droBia1 scf7180000302143:3059650-3059824 - TCAACAAG------CGAA----------------GTGA----------AGT-TAAAGGTGCA--------A-G-----------TGG---------------------------GCCAT-------------------------------CA-AACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC-------------------------------------------------------------------AAGCC--------------------A-TAAATCAATTTGAGTGATCCCCACG
droTak1 scf7180000415384:84144-84330 + TCAACATG------CTTA----------------GTGA----------AGT-TAAAG-TTAA--------AGTTAATGTGAATGTAG---------------------------GCAAT-------------------------------CT-AACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC-------------------------------------------------------------------AAGCC--------------------AGTGAATTAAGTTGAGTGATCCCAGCA
droEle1 scf7180000491201:2013821-2013997 - TCAACAAG------CCAA----------------GTGA----------TGTTTTTTAGTGAA--------A-G------------AG---------------------------GCAAT-------------------------------CC-CCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATTT----------------------AC-------------------------------------------------------------------AAGCC--------------------AATACAAAAAGTTGAGTGAACCCCGCT
droRho1 scf7180000780066:73759-73934 + TCAACTTG------CCTA----------------GTGA----------AAT-TATTAGTGAA--------A-A-----------GAA---------------------------GACAT-------------------------------CC-AAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT-----------------------AC-------------------------------------------------------------------AATTC--------------------AATAAAACAAGTTGAGTGATCCCTACA
droFic1 scf7180000454039:847889-848042 - TCAACAGA------CAAG----------------GTGA----------AGT-TACCAGTGAA--------A------------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT-----------------------AC-------------------------------------------------------------------A-----------------------------ATAAAGTTTAGTGATTCCTAAA
droKik1 scf7180000302679:89186-89377 - TCATCAAGTTAGGGGATAA-A-------------GTGC----------AGT-TGTAA-----------------------------------------------------------------------------CAAGTTAATATATCCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT-----------------------AT-------------------------------------------------------------------GA--TATTCAGGATATGTC------C-TAAAC-----CAAGTGATATCTCAA
droAna3 scaffold_13266:9731465-9731668 + dan-mir-4 Known_mirbase TCATCAAG------CTAA--AGTGACTTGGAAATGTAA----------AGT----------------------------------------------------TTCA-AAT--------AATA-------------------TAC--C-AAT-ATAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTAACAAGAATTTCAAATGTGAC-------------------------------------------------------------------TATTC--------------------GAAAAAAAATGTAAAATATTCT-----
droBip1 scf7180000396427:874443-874617 + TCAACAAG------CTAA--A-------------GTG-------------T----------------------------------------------------TTCA-AAT--------AGTG---------------------T--T--TC-TTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTTTATTTATGAAAATTTAAAA-----------AA------------------------------------------T---------------------T--------------------AAATAAAA-----AAGTGAA---ATAT
dp5 3:12677329-12677586 - dps-mir-4 Known_mirbase TCAACATGGCCAAC--CA----------------GTGA-CGAAAGTGA---------------------------------------CAAAAGTGAAAAAAGTGACAA-AG--------TTTGTGTACACTCCACGAGTTGATAC--C--TT-ATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------ACCTACCACAACCACACCCACACCA------ACACCCACACCCACCCTCACATCCA--------TCCCAGTGTC--------------------A----------TTGATTAGTTC-CCAA
droPer2 scaffold_2:8906080-8906343 + dpe-mir-4 Known_mirbase TCAACATGGCCAAC--CA----------------GTGA-CGGAAGTGA---------------------------------------CAAAAGTGAAAAAAGTGACAA-AG--------TGTGTGTACACTCCACGAGTTGATAC--C--TT-ATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------ACCTACCACAACCACACCCACACCAACACCAACACCCATACCCACCCTCACATCCA--------TCCCAGTGTC--------------------A----------TTGATTAG-CTCCCAA
droWil2 scf2_1100000004514:1651556-1651747 - dwi-mir-4 Known_mirbase TCAACAAG------CAAC-A--------------ACCA----------ACA-AGCTAGTGAGAAGAATTAA-C------------------------------TTTA------------------------------------AC--C-AAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGTT-------------TAAGG-----------AC------------------------------------------ATCAATAGCAAAGTTCAAGTTTC--------------------A----------TC--GTCG-----TTT
droVir3 scaffold_12875:4112231-4112449 + dvi-mir-4 Known_mirbase TCAACGTA------TATAA---------------AAAG-CACAAGTTC---------------------------------------TCGATTTGATAACCGTCGCAA-TA--------TATATATATA---TATATATCTATAT--C--AT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGCTATAA--------------TCTGAC----CATATATATA-------------------------------------------------------------TCT--------GATATTC----------TCGTA----TACTATA
droMoj3 scaffold_6496:20936569-20936783 - dmo-mir-4 Known_mirbase TCAACAATTTCAAT-----T--------------ATAA----------AAT-TTCTAGTGCA--------T-G------------GTTCAAACTTAAAAAGAAAACAA-A---------------------------ATCTATAT--C--GT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCCTATAT----------------------ATAATATATATATA------------------------------TACATCT-----------------------------------------------ATGAAAAGTTTTTATGAAA
droGri2 scaffold_5621:2928-3118 + dgr-mir-4-2 Known_mirbase TCAACATAGG----CAAC------------------------------AGT-TTTGGTTA------------------------------------------------AAT--------AATA---------AATCGATCTATGT--T--TT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTATAT----------------------AGTGTATAT--------------------------------------------------------AA--TATTCCT----------------------GATATATGTGTTAAAGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-T-----------T---------------A--ATCA-GAT------------------------------------A--CT-GGGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT--------------------AC-------------------------------------------------------------------GGGTC--------------------AAGAAATCGAGTTAAGTGTTCCCCCAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22143469.004346903040260314932340000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................23113202.00132020131143617520100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21111677.00116770279630200041330000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2313785.0037850134533282100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2011936.0019360417561740200000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2211589.0015890113462420000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231988.0098800941460100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231701.0070100678230000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................241574.0057400509650000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................231559.0055900483760000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................251375.0037501673070000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................181362.003620036200000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................221357.003570035250000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241261.0026100452160000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................231255.002550125040000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................241254.0025401201520000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211246.002460123780000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................221245.0024511202410000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................231120.0012000104160000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................221104.001040066370100000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21197.00973053410000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24190.0090008910000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................23188.0088008800000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................18187.0087008700000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................24183.0083008210000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................23183.00830147350000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22182.00820061210000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20175.0075007500000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................24174.0074006950000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22170.0070026530000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22163.0063006030000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................24156.0056005420000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20147.0047014420000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19139.0039002971200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22139.0039003360000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21138.0038023060000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................22137.0037013240000000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................26127.0027002700000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................22126.0026002510000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................21123.0023002210000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................22122.0022002200000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................24120.0020002000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................19115.0015001410000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21115.0015001050000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................23115.0015001230000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................23112.0012001110000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT......................................................................................................................................................................22112.0012001020000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................23112.0012001200000000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................24112.0012001200000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................19110.0010001000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................20110.001000640000000
..........................................................................................................................................................GGG-CAGTTGCAATTAGTTT.................................................................................................................................................................................................................................19110.001000460000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT......................................................................................................................................................................21110.001000820000000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2319.00900180000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................2119.00900540000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................2419.00900900000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT.......................................................................................................................................................................2318.00800800000000
......................................................................................................................................................................................................................GCTAGACAACCATTGAAG.......................................................................................................................................................................1817.00700700000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2117.00700700000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2417.00700700000000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2316.00600600000000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2516.00600600000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2016.00610410000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAG.......................................................................................................................................................................2016.00600510000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2616.00600420000000
droEre2
TCAACATG------CACACT--------------GTGA----------AGT-TGCGAGTGAA--------A-A-----------C--------------------AA-AAG--------------------------------AT--A--CT-GTAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC-----------------------AA-------------------------------------------------------------------GAGTT--------------------AGCAAATCCAGTTAAGTGATCCCCTAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22120463.0020463148616794021641540
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2115807.00580748743841926360
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2314440.00444029734780662120
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2311617.0016179013600164120
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................201727.0072736596092030
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................221517.0051743376097010
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211185.0018572100013000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................231140.00140413303000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................221133.00133012607000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231123.00123411009000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................23199.0099581013000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................18188.008808800000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................25151.0051126031110
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................22148.00482313012000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20146.004614401000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................23143.0043131011000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22141.004104001000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................24141.004113406000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................24138.00381115012000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20136.0036161307000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................24133.003353024010
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21131.003173021000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22129.002932303000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................22127.002726018010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24124.002421903000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22123.002321407000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................24123.002302102000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................24121.002102001000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................23119.00193709000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19119.00197903000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................21116.001611401000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23116.00168602000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21111.00115501000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21111.00117202000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................18210.502102100000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................24110.001001000000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2618.0080800000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................1918.0080701000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2218.0080602000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2418.0080701000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................2217.0070304000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................2317.0070700000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTC..........................................................................................................................................................................2017.0070601000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2016.0061005000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2015.0051103000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2315.0052201000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2114.0040400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................2114.0040301000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2214.0041201000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................2114.0040004000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1914.0040400000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA........................................................................................................................................................................................................2613.0032001000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................2313.0030300000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2513.0030300000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................2413.0030201000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2712.0020200000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAA.......................................................................................................................................................................2012.0020200000
droSec2
TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-C------------------------------TTCA-AAT--------------------------------AT--T--CT-GTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------AAGTC--------------------AGGAAATCAAGTTAAGTGATCCCCAAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22119825.00198255411218407865
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21110325.001032518039901241
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2311484.001484322141238
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2311312.001312220125139
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2011212.001212131118315
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241431.00431204254
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................221322.003222031010
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................251210.00210102054
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................221129.00129101262
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211105.00105150864
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231103.0010320974
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21191.009110900
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................23163.006300621
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................22157.005750520
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................23151.005110491
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19149.004950431
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22134.003410303
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22133.003300303
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................24131.003110300
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21130.003030270
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................23128.002800262
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20128.002830250
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20127.002760210
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................23126.002600251
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................23122.002200202
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................22122.002200220
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................20121.002100210
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23121.002140170
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24119.001900163
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22117.001700161
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21116.001610141
..........................................................................................................................................................TGG-CGGTTGCAATTAGTTT.................................................................................................................................................................................................................................19116.001610132
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................24115.001500150
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.........................................................................................................................................................................................................24113.001300130
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................21113.001300121
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22112.001200111
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................19110.001000100
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................2118.0080071
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2417.0070070
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT.........................................................................................................................................................................................................2516.0060060
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTA..........................................................................................................................................................................2015.0050050
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2215.0050050
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................1815.0050050
.........................................................................................................................................................GTGG-CGGTTGCAATTAGTTT.................................................................................................................................................................................................................................2014.0041030
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2614.0040040
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2214.0040040
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2114.0040040
...................................................................................................................................................................................................................AAAGCTAGACAACCATTG..........................................................................................................................................................................1814.0040040
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1913.0030030
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTG..........................................................................................................................................................................1913.0030030
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2013.0031020
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...........................................................................................................................................................................................................2313.0030030
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2113.0030030
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2113.0030030
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC.......................................................................................................................................................................2312.0020020
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2512.0020020
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATGA..........................................................................................................................................................................2012.0020020
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2412.0020020
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................2112.0021010
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2312.0020020
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2211.0010010
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................2311.0010010
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2411.0010001
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2511.0010010
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT..........................................................................................................................................................................................................2311.0010010
droSim2
TCAACATG------CTCA----------------GTGA----------AGT-TGCAAGTGAA--------A-C------------------------------TTCA-AAT--------------------------------AT--T--CT-GTGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------AAGTC--------------------AAGAAATCAAGTTAAGTTATCACCAAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22167041.00670410019911842819111232322303137373719000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21125945.002594500814443789551359787893324303000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2312764.002764008114001321500895025504000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2011723.001723013850411772602029702000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2511292.001292002000117463260301500000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2111188.00118840110810000273211500000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2411139.00113900700015354350616400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2311061.0010610020080341210146048900000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................221759.007591071500000101901400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231524.00524003490001078870900000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................231389.00389313460003091401111000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................241347.003471028510001292001000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................211243.002430023600010210300000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................221225.002253010500030475001700000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................221207.00207003800020443109200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231172.0017200700011825003001000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................231139.0013900470000041440700000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................21194.009400070000363701400000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22172.00720001000139260500000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................20157.0057005400000110100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19148.00480000020025170400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................22140.00400020000014170700000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24137.0037005000001980302000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................18135.0035002033000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCT................................................................................................................................................................................................................18129.0029002900000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21128.0028001600000240600000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20127.0027000200001370500000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................20126.0026102300000010100000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................22125.0025002100000220000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20122.00220000000012100000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...........................................................................................................................................................................................................23122.0022001700000230000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22119.001900100001480500000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................21118.0018000000001001700000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................22117.0017001700000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................24115.001500000000780000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22114.0014001000002101000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG...........................................................................................................................................................................................................22113.0013001300000000000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................23113.001300000000430600000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22112.001200010100230500000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2319.00900000000130500000
........................................................................................................................................................................................................................TAGACAACCATTGAA........................................................................................................................................................................1519.00900000000090000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................2118.00800000000210500000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1918.00800000001240100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2418.00800110000100500000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG...........................................................................................................................................................................................................2317.00700700000000000000
......................................................................................................................................................................................................................GCTAGACAACCATTGAA........................................................................................................................................................................1717.00700000000250000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2216.00600000000230100000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGA...........................................................................................................................................................................................................2216.00600500000000100000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTG..........................................................................................................................................................................1916.00600010000220100000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2316.00600100000120200000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGG.........................................................................................................................................................................................................2515.00500500000000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................1915.00500000000220100000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTT...............................................................................................................................................................................................................1915.00500500000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................2315.00500500000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.........................................................................................................................................................................................................2415.00500100000000400000
.....................................................................................................................................................................................................................AGCTAGACAACCATTGAA........................................................................................................................................................................1815.00500000000320000000
.......................................................................................................................................................................................................................CTAGACAACCATTGAA........................................................................................................................................................................1614.00400000000310000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................1914.00400400000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.....................................................................................................................................................................2514.00400100000020001000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT..........................................................................................................................................................................................................2314.00400400000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAC.............................................................................................................................................................................................................2114.00400400000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA......................................................................................................................................................................2414.00400300000010000000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................2214.00400400000000000000
........................................................................................................................................................................TAGTTTCTTTGGTCGTCCAGC..................................................................................................................................................................................................................2114.00400300000010000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTT...............................................................................................................................................................................................................1813.00300300000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG.........................................................................................................................................................................................................2413.00300200000000100000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGA.........................................................................................................................................................................1813.00300000000210000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCA.............................................................................................................................................................................1713.00300000000210000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2312.00200000000110000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGACT.......................................................................................................................................................................................................2612.00200200000000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2112.00200100000010000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................2412.00200000000020000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGC.........................................................................................................................................................................................................2512.00200000000020000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTC...............................................................................................................................................................................................................1912.00200200000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAC........................................................................................................................................................................................................2612.00200000200000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT............................................................................................................................................................................................................2212.00200200000000000000
dm3
TCAACATG------CTCA----------------GTAA----------AGT-TGCGAGTGAA--------A-A-----------T-------------------TAA-AAT--------------------------------AT--T--AT-GGAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC-----------------------AC-------------------------------------------------------------------GAGTC--------------------AAGAAATTATGTTAAGTGATCCCCAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

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..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................22124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000300010000000000000000000000000000100000000000000000000000005701000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000
droEug1
TCAACAAG------CTAA----------------GTGAA---------AGT-TAAAAAG----------------------------------------------CA-AAAATAAAGAT-------------------------------CT-AAAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------TC-------------------------------------------------------------------AAGCC----------------------------AAGTTAAGTGTTACCAAAASizeHit CountTotal NormTotal
No Reads
droBia1
TCAACAAG------CGAA----------------GTGA----------AGT-TAAAGGTGCA--------A-G-----------TGG---------------------------GCCAT-------------------------------CA-AACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC-------------------------------------------------------------------AAGCC--------------------A-TAAATCAATTTGAGTGATCCCCACGSizeHit CountTotal NormTotal
No Reads
droTak1
TCAACATG------CTTA----------------GTGA----------AGT-TAAAG-TTAA--------AGTTAATGTGAATGTAG---------------------------GCAAT-------------------------------CT-AACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------AC-------------------------------------------------------------------AAGCC--------------------AGTGAATTAAGTTGAGTGATCCCAGCASizeHit CountTotal NormTotal
No Reads
droEle1
TCAACAAG------CCAA----------------GTGA----------TGTTTTTTAGTGAA--------A-G------------AG---------------------------GCAAT-------------------------------CC-CCAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATTT----------------------AC-------------------------------------------------------------------AAGCC--------------------AATACAAAAAGTTGAGTGAACCCCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
TCAACTTG------CCTA----------------GTGA----------AAT-TATTAGTGAA--------A-A-----------GAA---------------------------GACAT-------------------------------CC-AAGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT-----------------------AC-------------------------------------------------------------------AATTC--------------------AATAAAACAAGTTGAGTGATCCCTACASizeHit CountTotal NormTotal
No Reads
droFic1
TCAACAGA------CAAG----------------GTGA----------AGT-TACCAGTGAA--------A------------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT-----------------------AC-------------------------------------------------------------------A-----------------------------ATAAAGTTTAGTGATTCCTAAASizeHit CountTotal NormTotal
No Reads
droKik1
TCATCAAGTTAGGGGATAA-A-------------GTGC----------AGT-TGTAA-----------------------------------------------------------------------------CAAGTTAATATATCCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT-----------------------AT-------------------------------------------------------------------GA--TATTCAGGATATGTC------C-TAAAC-----CAAGTGATATCTCAASizeHit CountTotal NormTotal
No Reads
droAna3
TCATCAAG------CTAA--AGTGACTTGGAAATGTAA----------AGT----------------------------------------------------TTCA-AAT--------AATA-------------------TAC--C-AAT-ATAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTAACAAGAATTTCAAATGTGAC-------------------------------------------------------------------TATTC--------------------GAAAAAAAATGTAAAATATTCT-----SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2212705.00270512022712911157
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2112622.00262279208043910410
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2311441.001441191214198325
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................201739.0073927567137116
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................231313.003131326534100
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................221128.0012869722012
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................181125.0012501250000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................24181.00811727001
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................23163.00630630000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................23153.005324110000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19142.00422319000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................21141.004112227000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................23132.00321310000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................21131.00310256000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................23129.00290244010
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................24125.00254183000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................18125.00250250000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................25123.00234710200
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................24122.00221713100
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................22121.00210210000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22121.00210201000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20118.0018980001
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24115.00153120000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23114.0014770000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................22113.0013751000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22112.00120111000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................21111.0011065000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22111.0011191000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2419.009081000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2418.008071000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................2418.008071000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................2017.007070000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................2217.007133000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................2317.007132100
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2117.007403000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTT..........................................................................................................................................................................2016.006042000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2215.005041000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2115.005050000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................1915.005050000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT......................................................................................................................................................................2115.005023000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2314.004040000
......................................................................................................................................................................................................................GCTAGACAACCATTGAAG.......................................................................................................................................................................1814.004040000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2114.004040000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................2313.003030000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................2213.003021000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2313.003030000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2613.003030000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT.......................................................................................................................................................................2313.003012000
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2513.003030000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................2313.003021000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................2113.003030000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................2113.003300000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGA.........................................................................................................................................................................1812.002020000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTG..........................................................................................................................................................................1912.002200000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2412.002020000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTC..........................................................................................................................................................................2012.002020000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................2312.002020000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC......................................................................................................................................................................2411.001010000
.......................................................................................................................................................................................................................................GTTCGTTGTGGCAATTGCGGC...................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTG.....................................................................................................................................................................2511.001010000
..........................................................................................................................................................TAA-AGGTTGCAATTAGTTT.................................................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2511.001010000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2411.001010000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTG..........................................................................................................................................................................1811.001010000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................2411.001001000
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAG........................................................................................................................................................................2511.001010000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC........................................................................................................................................................................2311.001010000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2511.001010000
droBip1
TCAACAAG------CTAA--A-------------GTG-------------T----------------------------------------------------TTCA-AAT--------AGTG---------------------T--T--TC-TTAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTTTATTTATGAAAATTTAAAA-----------AA------------------------------------------T---------------------T--------------------AAATAAAA-----AAGTGAA---ATATSizeHit CountTotal NormTotal
No Reads
dp5
TCAACATGGCCAAC--CA----------------GTGA-CGAAAGTGA---------------------------------------CAAAAGTGAAAAAAGTGACAA-AG--------TTTGTGTACACTCCACGAGTTGATAC--C--TT-ATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------ACCTACCACAACCACACCCACACCA------ACACCCACACCCACCCTCACATCCA--------TCCCAGTGTC--------------------A----------TTGATTAGTTC-CCAASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22145829.0045829013014050324399403040
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21111063.0011063063383616206300000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2315556.0055560945109135200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2314487.00448701143732563600000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2011573.00157301001247022500001
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2211166.001166023914222700000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231822.0082202373206700000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231546.005460950902800000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................221523.005230051301000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211335.0033505625502400000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................231334.0033406223010500000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................181313.00313003130000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................231264.00264022590300000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241254.0025401319022200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................241215.002150314606600000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................221142.00142021340600000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................241102.0010203970200000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................22182.00820203003200000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22181.008104721400000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................25175.0075061105800000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23171.0071024702100010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22165.0065004502000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20161.0061034190800000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20157.005702540100000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................22153.0053022202900000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................22148.004802430300000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................23147.004700440300000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................22147.004701400600000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................18242.508500850000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................24142.004200420000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22139.003901300800000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19137.003705250700000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21133.003307202400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................21132.0032011201900000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................24127.002702240100000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................23126.002600230300000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................24126.002600251000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................23124.002402801400000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21123.002300140900000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................23122.002200180400000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................24121.00210490800000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21120.00200590600000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC........................................................................................................................................................................23115.001500150000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT......................................................................................................................................................................22113.00130090400000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................19113.001303100000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................21113.001301110100000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................23113.001300120100000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................24112.001200120000000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................24111.001100110000000
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................25111.001100110000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................24110.001000100000000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................23110.001000100000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1918.0080240200000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2118.0080070100000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2618.0080080000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2018.0080200301020
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2316.0060000600000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................2116.0060020400000
..........................................................................................................................................................TTG-TGGTTGCAATTAGTTT.................................................................................................................................................................................................................................1916.0060010500000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT.......................................................................................................................................................................2316.0060060000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC......................................................................................................................................................................2415.0050050000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2415.0050050000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2515.0050040100000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................2315.0050050000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA......................................................................................................................................................................2415.0050030200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA.......................................................................................................................................................................2315.0050020300000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2215.0050050000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTC..........................................................................................................................................................................2015.0050050000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2415.0050040100000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT......................................................................................................................................................................2115.0050010400000
droPer2
TCAACATGGCCAAC--CA----------------GTGA-CGGAAGTGA---------------------------------------CAAAAGTGAAAAAAGTGACAA-AG--------TGTGTGTACACTCCACGAGTTGATAC--C--TT-ATTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-----------------------ACCTACCACAACCACACCCACACCAACACCAACACCCATACCCACCCTCACATCCA--------TCCCAGTGTC--------------------A----------TTGATTAG-CTCCCAASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................221705.00705107154915222
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................211489.004894523630637
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................211181.0018117704000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................231137.00137258100040
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................221107.001079737000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................231101.0010120668052
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................20168.00683459020
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................24155.00552053000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................23142.00423921000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21131.00312902000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................22130.00308119011
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23124.00241716000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................22118.00181007001
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................24116.0016907000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................23115.00152013000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................25114.0014507020
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................20111.00111001000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................2119.009034002
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCT................................................................................................................................................................................................................1818.008800000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2418.008206000
............................................................................................................................................................................TTCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2218.008800000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2015.005302000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2215.005401000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................2315.005401000
......................................................................................................................................................................................................TTTCTCTGATCATAAAGCTAGACAACC..............................................................................................................................................................................2714.004400000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2214.004003010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2314.004102010
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG...........................................................................................................................................................................................................2313.003300000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................2113.003002010
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................2013.003021000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................1913.003300000
............................................................................................................................................................................TTCTTTGGTCGTCCAGCCT................................................................................................................................................................................................................1912.002200000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................2412.002200000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2312.002002000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................2212.002001001
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTT...............................................................................................................................................................................................................1912.002200000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................2212.002200000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG...........................................................................................................................................................................................................2211.001100000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2411.001001000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................2311.001001000
............................................................................................................................................................................TTCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2211.001001000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTT...............................................................................................................................................................................................................1811.001100000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCC................................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................TTG-TGGTTGCAATTAGTTT.................................................................................................................................................................................................................................1911.001001000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2311.001100000
...................................................................................................................................................................................GTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................1911.001001000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................2211.001000010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................2211.001000010
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2311.001001000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA...........................................................................................................................................................................................................2311.001010000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................2111.001001000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2111.001001000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2211.001000010
......................................................................................................................................................................................................................GCTAGACAACCATTGAAG.......................................................................................................................................................................1811.001001000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC........................................................................................................................................................................2311.001100000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAG........................................................................................................................................................................................................2611.001001000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................2111.001010000
droWil2
TCAACAAG------CAAC-A--------------ACCA----------ACA-AGCTAGTGAGAAGAATTAA-C------------------------------TTTA------------------------------------AC--C-AAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGTT-------------TAAGG-----------AC------------------------------------------ATCAATAGCAAAGTTCAAGTTTC--------------------A----------TC--GTCG-----TTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22147107.00471070297146590219
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21127809.00278090149127479180
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................23110791.001079103501073521
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2011716.0017160100168719
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231596.005960205931
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................231538.005380405331
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241496.004960004951
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................241280.002800002800
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................221238.002380002371
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211171.001710901602
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................221169.001690001690
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231167.001671001660
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................221140.001400001391
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................221113.001130101120
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................22174.00740006113
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................23154.0054000540
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20150.0050040460
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19143.0043010411
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22140.0040000400
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................23137.0037010360
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................23130.0030020280
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................21128.0028000280
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21127.0027000270
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................22125.0025000250
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................23123.0023000230
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................22121.0021000210
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................23121.0021010200
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................24118.0018000180
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21118.0018000180
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................23116.0016010150
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................25116.0016000160
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................20114.0014000131
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................21113.0013000130
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20113.0013020110
.......................................................................................................................................................................................................................................GTTCGTTGTGGCATTATCGCCA..................................................................................................................................................22110.0010000100
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................24110.001001090
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................2319.00900090
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................1818.00800080
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................1918.00800080
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTA..........................................................................................................................................................................2018.00800080
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA.......................................................................................................................................................................2317.00700070
........................................................................................................................................................................TAGTTTCTTTGGTCGTCCAGC..................................................................................................................................................................................................................2117.00700070
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................2117.00700061
..........................................................................................................................................................TGGCGGGTTGCAATTAGTTT.................................................................................................................................................................................................................................2017.00700070
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA.....................................................................................................................................................................2517.00700070
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT.........................................................................................................................................................................................................2415.00500050
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1915.00500050
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................2215.00501040
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2515.00500050
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAG......................................................................................................................................................................2414.00400040
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2114.00401030
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................2214.00400040
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTT..........................................................................................................................................................................2014.00400040
....................................................................................................................................................................................................................AAGCTAGACAACCATTGA.........................................................................................................................................................................1814.00400040
................................................................................................................................................................................TTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2214.00400040
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2414.00400040
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................2413.00301020
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATGA..........................................................................................................................................................................2013.00300030
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA........................................................................................................................................................................................................2513.00300030
.......................................................................................................................................................................................................................CTAGACAACCATTGAAGTTCGT..................................................................................................................................................................2213.00300030
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2413.00300030
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTG..........................................................................................................................................................................2213.00300030
........................................................................................................................................................................TAGTTTCTTTGGTCGTCCAGCC.................................................................................................................................................................................................................2213.00310020
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATT...........................................................................................................................................................................2113.00300030
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................2412.00200020
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................2212.00200020
.......................................................................................................................................................A--TGGCGGGTTGCAATTAGTTT.................................................................................................................................................................................................................................2112.00200020
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2512.00200020
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2512.00200020
....................................................................................................................................................................................TCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................1812.00200020
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT......................................................................................................................................................................2112.00200020
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTG..........................................................................................................................................................................1912.00200020
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2112.00200020
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................2112.00200020
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2212.00200020
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATA......................................................................................................................................................................2411.00100010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................2311.00100010
droVir3
TCAACGTA------TATAA---------------AAAG-CACAAGTTC---------------------------------------TCGATTTGATAACCGTCGCAA-TA--------TATATATATA---TATATATCTATAT--C--AT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGCTATAA--------------TCTGAC----CATATATATA-------------------------------------------------------------TCT--------GATATTC----------TCGTA----TACTATASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................22118755.00187550039860010000008571000110330210234041811271346973466022023210167167123941424688331817100107990326102019819916220100001259382404139205
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2313202.003202001160000000000213000000000011100001270423916476110067359565032732151271813110003210011002242821510000016058602535
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2113014.003014003203000000000010000001011201110111403757821700000318455514454500016484142000710350000003336291321
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2312797.002797011198600000000150000100000000000012202629944600000261822251728163110665000301541000013115700000058231377
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................201982.0098200157300000000000000000000102010002034430000112111210209261511129000436420000911240000002123241117
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241957.009570005000000000200000001000010000198032163242358000003200010000110000320000030400000031102
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................231604.0060400025900000000010000000000000000001061131000022719141519253844130102021000008840000000351711107
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................221592.005920003820000000001000000000000000000605717140000187620427543400094500000121600000098773
.................................................................................................................................................................................................................ATAAAGCTAGACAACCA.............................................................................................................................................................................171455.004550000000000000000000000000000000000000000004784841334058254126111470002800000000000000010000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................251330.003300004000000000000000000000001000017018699279000013110111200000000331000002200000001000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................231318.00318000160000000000000000000000000000190112346480000551409456391110000490000000400000001200
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................231277.002770009100000000010000000000000000000000010000016717119151212184750002670000020610000051012
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................241275.00275000140000000000000000000000000000305302317000003216222252315186834000440000001000000000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................231258.002580005800000000010000000000000000002013210000014171061118618121810170007190000000200000011201
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................241198.00198000500000000002000000000000000000401441001001711173814101153380008130000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................181149.00149000660000000000000000000000000000000220000018759107397302000800000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................221132.0013200040000000000000000000000000000503714100000120115334252321000650000004400000060200
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................221125.001250006700000000000000000000000000000000110000010130212401000011000003012000000240000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................211123.0012300088000000000000000000000000000000014400000010000010000000060000000800000033301
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................221116.001163207000000000000000000000000000050518171700000623024143602000530001000000000000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................23197.009700084000000000000000000000000000010124100000000000000000000010000000100000010001
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................24195.009500033000000002001000000000002000000145200002414306323113000110000000301000011202
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................22171.007100040000000000000000000000000000010113000000320010001010000020000030400000061100
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................23152.00520102000000000000000000000000000000031400000325634121240000440000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21147.00472300002000000000000000000000000010154101000000214041120000651000000000000000000
..........................................................................................................................................................TAG-AGGTTGCAATTAGTTT.................................................................................................................................................................................................................................19136.00360000000000000100000000010000000030276600004120000000000000000000000000000010011
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................20135.003500032000000000000000000000000000000010000000000000000000000000000000100000010000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................22132.003200024000000000000000000000000000000110300000010000000000000010000000000000010000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................22124.002400013000000000000000000000000000000000000000100001001000000120000000200000011010
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................23121.00210008000000000000000000000000000000113300000000001000000000000000000400000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA........................................................................................................................................................................................................25121.002100000000000000000000000000000000100351100000000000000000000000000000000000010000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................24120.002000010000000000000000000000000000000010000000001111011000000300000000000000000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................24119.001900018000000000000000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................20119.001900017000000000000000000000000000000000000000000000000000000010000000100000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................22118.00180009000000000000000000000000000010110200000001000000000000110000000000000001000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................24118.001800014000000000000000000000000000000001200000000001000000000000000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21118.00180002000000000000000000000000000000125200000010101000000000110000000000000010000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................19117.00170004000000000000000000000000000000102100000101000110110000100000000000000010100
.........................................................................................................................................................ATAG-AGGTTGCAATTAGTTT.................................................................................................................................................................................................................................20115.00150001000000001000000000000000000000012700001000000000000000000000000100000001000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTC..........................................................................................................................................................................................................23115.00150001000000000000000000000000000010000000001810100100000000100000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTC..........................................................................................................................................................................................................24111.00110000000000000000000000000000000000000000000000110041000000400000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................22111.00110009000000000000000000000000000000000000000000000000000000020000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................18110.001000010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................2319.0090009000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCT................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000011020000300000000000002000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA........................................................................................................................................................................................................2619.0090000000000000000000000000000000000162000000000000000000000000000000000000000000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2618.0080006000000000000000000000000000000002000000000000000000000000000000000000000000
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2417.0070007000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT.......................................................................................................................................................................2317.0070005000000000000000000000000000000000000000000000000000000000000010000000010000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2617.0070000000000000000000000000000010000000100000003000100000000000000000000000010000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2217.0070005000000000000000000000000000000000000000000000001000000000000000000000010000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................2216.0060000000000000000000000000000000000000100000010000100001000110000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT........................................................................................................................................................................................................2516.0060000000000000000000000000000000000010400000000000000100000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2516.0060000000000000000000000000000000000000200000010001000020000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................2116.0060004000000000000000000000000000000000000000000000000000000020000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA..............................................................................................................................................................................................................2016.0060001000000000000000000000000000000000000000001000000001000200000000000000000100
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................2315.0050002000000000200000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTCT.........................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000100000000400000000000000000000
...........................................................................................................................................................AG-AGGTTGCAATTAGTTT.................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000110300000000000000000000000000000000000000000
.......................................................................................................................................................T-ATAG-AGGTTGCAATTAGTTT.................................................................................................................................................................................................................................2115.0050000000000000000000000000000000010001300000000000000000000000000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA.......................................................................................................................................................................................................2615.0050000000000000100000000000000000010021000000000000000000000000000000000000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................1915.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................2315.0050000000000000000000000000000000000020200000000100000000000000000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT.........................................................................................................................................................................................................2515.0050001000000000000000000000000000000002000000000001010000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................2415.0050005000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2514.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................2114.0040002000000000000000000000000000000000000000000000000000000020000000000000000000
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2514.0040002000000000000000000000000000000010000000000000000000000010000000000000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2114.0040004000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATC..............................................................................................................................................................................................3514.0040000000000000000000000000000000000000000000220000000000000000000000000000000000
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................2114.0040002000000000000000000000000000000000100000000000000000000010000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2014.0040000000000000000000000000000000000010300000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA......................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000011000000100000000100000000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................1914.0040002000000000000000000000000000000001100000000000000000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC......................................................................................................................................................................2414.0040001000000000000000000000000000000000000000001100100000000000000000000000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC......................................................................................................................................................................2414.0040003000000000000000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGAA.....................................................................................................................................................................2413.0030000000000000000000000000000000000000000000120000000000000000000000000000000000
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2113.0030002000000000000000000000000000000000000000000000000000000000000010000000000000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGA.........................................................................................................................................................................1813.0030003000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................CTTTGGTCGTCCAGCCT................................................................................................................................................................................................................1713.0030000000000000000000000000000000000000000000100000010000000000000000100000000000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC.......................................................................................................................................................................2313.0030001000000000000000000000000000000000000000000000000000000000000000000000110000
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................2213.0030001000000000000000000000000000000000100000000000100000000000000000000000000000
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTT..........................................................................................................................................................................................................2413.0030001000000000000000000000000000000000000000000010001000000000000000000000000000
droMoj3
TCAACAATTTCAAT-----T--------------ATAA----------AAT-TTCTAGTGCA--------T-G------------GTTCAAACTTAAAAAGAAAACAA-A---------------------------ATCTATAT--C--GT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCCTATAT----------------------ATAATATATATATA------------------------------TACATCT-----------------------------------------------ATGAAAAGTTTTTATGAAASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................221144666.00144666102689251419582
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................21149844.00498443271215471212
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................23144021.00440210173300422880
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................23117180.0017180038800167920
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................2219277.00927725130087620
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................2315791.00579101080056830
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTG..........................................................................................................................................................................2015554.00555422100153401
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2312097.00209701270019691
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT......................................................................................................................................................................2411485.0014850620114220
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC........................................................................................................................................................................2211470.0014700140014560
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2311316.001316030013130
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA........................................................................................................................................................................2111294.0012940240012700
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAT............................................................................................................................................................................1811163.001163000011630
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................2311056.0010560100010460
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA.........................................................................................................................................................................221549.0054908005410
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................221546.00546164004810
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................221544.00544017005270
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA......................................................................................................................................................................241437.0043704004330
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT........................................................................................................................................................................221430.00430028004020
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAA........................................................................................................................................................................201396.0039601003950
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................241328.0032802003260
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGA.........................................................................................................................................................................201294.0029403002910
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................231218.0021800002180
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................221210.0021004002060
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................241209.00209033001751
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................241202.00202012000820
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC......................................................................................................................................................................241170.0017001001690
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................241155.0015501001540
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................241151.0015102001490
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG.......................................................................................................................................................................211150.0015000001500
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................231149.00149031001180
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA.........................................................................................................................................................................................................251143.0014307900640
.................................................................................................................................................................................................................ATAAAGCTAGACAACCAC............................................................................................................................................................................182132.5026500002650
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG..........................................................................................................................................................................................................231131.0013106001250
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATT...........................................................................................................................................................................191124.0012408001160
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC.......................................................................................................................................................................221122.0012200001220
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGA.........................................................................................................................................................................191114.0011400001140
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT........................................................................................................................................................................231105.0010505001000
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG........................................................................................................................................................................221101.0010101000910
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................21193.009312900630
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA.......................................................................................................................................................................23184.00840500790
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................24183.00830200810
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC........................................................................................................................................................................23174.00740000740
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................26172.00720000720
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT...........................................................................................................................................................................................................22170.007001200580
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG.........................................................................................................................................................................21166.00660600600
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAA........................................................................................................................................................................19161.00610000610
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT.......................................................................................................................................................................23150.00500000500
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA......................................................................................................................................................................23149.00490100480
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT.......................................................................................................................................................................24148.00480200460
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................23148.00480000480
..............................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA........................................................................................................................................................................25145.00450100440
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA.......................................................................................................................................................................21142.00420000420
................................................................................................................................................................................................................CATAAAGCTAGACAACCATTG..........................................................................................................................................................................21142.00420200400
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA.........................................................................................................................................................................25141.00410000410
....................................................................................................................................................................................................................AAGCTAGACAACCATTGAAG.......................................................................................................................................................................20141.00410100400
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGATT.......................................................................................................................................................................23141.00410100400
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC...........................................................................................................................................................................................................23140.00400000400
...................................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT......................................................................................................................................................................22131.00310100300
.............................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................27129.00290000290
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................25128.00280000280
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC......................................................................................................................................................................24128.00280000280
..................................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT.....................................................................................................................................................................24125.00250100240
....................................................................................................................................................................................................................AAGCTAGACAACCATTGA.........................................................................................................................................................................18124.00240000240
......................................................................................................................................................................................................................GCTAGACAACCATTGAAG.......................................................................................................................................................................18124.00240000240
..............................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG............................................................................................................................................................................................................21123.00230200210
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT.........................................................................................................................................................................21122.00220400180
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC.........................................................................................................................................................................21122.00220170050
...............................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG.......................................................................................................................................................................25121.00210000210
droGri2
TCAACATAGG----CAAC------------------------------AGT-TTTGGTTA------------------------------------------------AAT--------AATA---------AATCGATCTATGT--T--TT-ATAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTATAT----------------------AGTGTATAT--------------------------------------------------------AA--TATTCCT----------------------GATATATGTGTTAAAGTCGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA.........................................................................................................................................................................2122.00413
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA........................................................................................................................................................................2221.00211
.............................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG.............................................................................................................................................................................................................2120.50101
.................................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA.......................................................................................................................................................................2320.50101

Generated: 10/20/2015 at 07:33 PM