ID:

dya-mir-13a

 Coordinate:

3R:15188592-15188666 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-30.6 -30.2

Flybase annnotation

pre_miRNA [Dyak\mir-13a-RM]; utr3 [utr3_minus_7789]; miRNA [Dyak\miR-13a-RA]

No Repeatable elements found

Sense Strand Reads

AACGATTGGATGCTAAGCCAACAAGTGTTCGTGATCCAAGCCATAATTCTTACGTAACTCCTCAAAGGGTTGTGAAATGTCGCCTATTATCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAATCTCGGCAACTTATTTCATGTATTTCAAACATATTTCATAATCGAT

******************************************...((((.((((.(((((.((((((((((((((.(((................))).)))))))).)))))).))))).)))).)))).....**************************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 V058

head

 V046

embryo

 V052

head

 M043

female body

 V120

male body		 M026

head

 SRR1275486

Male prepupae		 SRR1275488

Male larvae
.................................................................................................TATCACAGCCATTTTGATGAGTT....................................................... 23 0 1 35057.00 35057 18594 5909 6623 2199 1354 334 44 0 0
.................................................................................................TATCACAGCCATTTTGATGAGT........................................................ 22 0 1 4356.00 4356 1176 1477 541 608 437 77 39 0 1
.................................................................................................TATCACAGCCATTTTGATGAGTC....................................................... 23 1 1 1380.00 1380 1361 10 3 5 1 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAATG................................................................................................ 22 0 1 1187.00 1187 960 4 211 4 6 2 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 917.00 917 903 6 5 3 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGTT....................................................... 23 1 1 641.00 641 638 2 1 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGTT....................................................... 23 1 1 540.00 540 522 9 7 1 0 1 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTTT...................................................... 24 0 1 331.00 331 130 104 35 37 15 10 0 0 0
................................................................................................CTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 303.00 303 269 9 17 3 5 0 0 0 0
..................................................................................................ATCACAGCCATTTTGATGAGTT....................................................... 22 0 1 274.00 274 153 0 1 1 119 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGTT....................................................... 23 1 1 268.00 268 158 54 45 11 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAG......................................................... 21 0 1 256.00 256 30 70 18 30 34 4 70 0 0
.................................................................................................TATCACAGCCATTTTGATGAGC........................................................ 22 1 1 215.00 215 203 6 3 1 0 0 2 0 0
.................................................................................................TTTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 171.00 171 168 2 0 1 0 0 0 0 0
.........................................................CGCCTCAAAGGGTTGTGAAATG................................................................................................ 22 1 1 162.00 162 162 0 0 0 0 0 0 0 0
.....................................................................................................ACAGCCATTTTGATGAGTT....................................................... 19 0 1 157.00 157 3 59 58 32 0 3 2 0 0
.................................................................................................TATCACAGCCATTTTGCTGAGTT....................................................... 23 1 1 153.00 153 1 104 30 18 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGCT....................................................... 23 1 1 150.00 150 57 32 43 16 2 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGCGTT....................................................... 23 1 1 139.00 139 1 98 28 12 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGATTT....................................................... 23 1 1 120.00 120 51 54 5 7 1 2 0 0 0
.................................................................................................TATCACAGACATTTTGATGAGTT....................................................... 23 1 1 109.00 109 41 5 35 4 24 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATTAGTT....................................................... 23 1 1 98.00 98 30 29 6 33 0 0 0 0 0
.................................................................................................CATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 89.00 89 73 8 4 1 3 0 0 0 0
.................................................................................................GATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 82.00 82 75 2 2 0 3 0 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGT........................................................ 22 1 1 77.00 77 69 3 3 2 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGTGTT....................................................... 23 1 1 76.00 76 31 33 10 1 1 0 0 0 0
.................................................................................................TATCACAGGCATTTTGATGAGTT....................................................... 23 1 1 58.00 58 6 2 2 1 47 0 0 0 0
.................................................................................................TATCACAGCCAGCTTGATGAGCT....................................................... 23 3 2 56.00 112 50 4 9 4 7 38 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 55.00 55 55 0 0 0 0 0 0 0 0
.................................................................................................TAGCACAGCCATTTTGATGAGTT....................................................... 23 1 1 54.00 54 4 30 7 13 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGGT....................................................... 23 1 1 49.00 49 5 10 24 5 5 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATGAGTT....................................................... 23 1 1 48.00 48 8 16 7 17 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGTC....................................................... 23 2 1 48.00 48 47 1 0 0 0 0 0 0 0
.................................................................................................AATCACAGCCATTTTGATGAGTT....................................................... 23 1 1 46.00 46 37 5 2 1 1 0 0 0 0
.........................................................CTACTCAAAGGGTTGTGAAATG................................................................................................ 22 1 1 44.00 44 44 0 0 0 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGT........................................................ 22 1 1 44.00 44 44 0 0 0 0 0 0 0 0
.................................................................................................TATCACGGCCATTTTGATGAGTT....................................................... 23 1 1 42.00 42 15 11 11 3 1 1 0 0 0
.................................................................................................TATCACAGCCATTTTGCTGAGT........................................................ 22 1 1 42.00 42 1 32 2 7 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAAT................................................................................................. 21 0 1 41.00 41 36 0 2 1 0 0 2 0 0
.................................................................................................TATCACAGCCATTTTGGTGAGTT....................................................... 23 1 1 41.00 41 9 18 10 3 1 0 0 0 0
.................................................................................................TATCACAGCCATTTTGTTGAGTT....................................................... 23 1 1 41.00 41 4 27 7 3 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGGGTT....................................................... 23 1 1 41.00 41 10 19 6 3 2 1 0 0 0
.....................................................................................................ACAGCCATTTTGATGAGT........................................................ 18 0 1 41.00 41 0 19 11 10 0 0 1 0 0
................................................................................................CGATCACAGCCATTTTGATGAGTT....................................................... 24 2 1 40.00 40 40 0 0 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGTC....................................................... 23 2 1 39.00 39 39 0 0 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGT........................................................ 22 1 1 37.00 37 35 1 0 1 0 0 0 0 0
..................................................................................................ATCACAGCCATTTTGATGAGT........................................................ 21 0 1 37.00 37 5 0 0 0 32 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTTA...................................................... 24 1 1 35.00 35 15 10 6 3 0 1 0 0 0
.................................................................................................TATCACATCCATTTTGATGAGTT....................................................... 23 1 1 33.00 33 13 11 3 5 1 0 0 0 0
.........................................................CTCTTCAAAGGGTTGTGAAATG................................................................................................ 22 1 1 32.00 32 32 0 0 0 0 0 0 0 0
....................................................................................................CACAGCCATTTTGATGAGTT....................................................... 20 0 1 32.00 32 28 1 2 0 1 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTTC...................................................... 24 1 1 31.00 31 16 8 5 1 0 1 0 0 0
.................................................................................................TATCACAGCCACTTTGATGAGTT....................................................... 23 1 1 31.00 31 11 14 6 0 0 0 0 0 0
.................................................................................................TATCTCAGCCATTTTGATGAGTT....................................................... 23 1 1 30.00 30 25 2 3 0 0 0 0 0 0
...................................................................................................TCACAGCCATTTTGATGAGTT....................................................... 21 0 1 30.00 30 14 5 6 1 4 0 0 0 0
.................................................................................................TATCACAGCTATTTTGATGAGTT....................................................... 23 1 1 30.00 30 11 9 8 2 0 0 0 0 0
.................................................................................................TATCGCAGCCATTTTGATGAGTT....................................................... 23 1 1 28.00 28 7 10 8 3 0 0 0 0 0
.................................................................................................TATCACAGCCATCTTGATGAGTT....................................................... 23 1 1 28.00 28 6 12 7 1 1 1 0 0 0
.................................................................................................TATCACAGCCATTTTGAAGAGT........................................................ 22 1 3 27.67 83 1 25 37 15 2 3 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTG....................................................... 23 1 1 27.00 27 22 2 1 2 0 0 0 0 0
.................................................................................................TATCACACCCATTTTGATGAGTT....................................................... 23 1 1 27.00 27 15 8 4 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGT........................................................ 22 1 1 27.00 27 2 13 4 6 0 1 0 1 0
.................................................................................................TATCACAACCATTTTGATGAGTT....................................................... 23 1 1 26.00 26 15 4 5 0 2 0 0 0 0
.................................................................................................TATCAGAGCCATTTTGATGAGTT....................................................... 23 1 1 26.00 26 22 3 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATG........................................................... 19 0 1 26.00 26 3 2 0 1 6 0 14 0 0
.................................................................................................TATCACAGTCATTTTGATGAGTT....................................................... 23 1 1 25.00 25 3 2 9 2 8 0 1 0 0
.................................................................................................TATCACAGCCATTTTAATGAGTT....................................................... 23 1 1 25.00 25 9 7 2 7 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGAT....................................................... 23 1 1 24.00 24 14 3 4 2 1 0 0 0 0
.................................................................................................TATCACAGCCGTTTTGATGAGTT....................................................... 23 1 1 24.00 24 4 12 4 3 1 0 0 0 0
.................................................................................................TATCACAGCCATTTCGATGAGTT....................................................... 23 1 1 23.00 23 8 7 7 1 0 0 0 0 0
.................................................................................................TGTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 22.00 22 22 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGATGAGTT....................................................... 23 1 1 22.00 22 0 10 8 4 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGCGT........................................................ 22 1 1 22.00 22 0 18 2 0 1 0 1 0 0
.................................................................................................TATCACAGCCATTTTGATAAGTT....................................................... 23 1 1 21.00 21 3 9 6 3 0 0 0 0 0
................................................................................................CTATCACAGCCATTTTGATGAGTC....................................................... 24 2 1 21.00 21 21 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGGCATTTTGATGAGT........................................................ 22 1 1 21.00 21 0 0 1 0 20 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATTAGT........................................................ 22 1 1 20.00 20 4 6 0 10 0 0 0 0 0
..................................................................................................AGCACAGCCATTTTGATGAGTT....................................................... 22 1 1 20.00 20 20 0 0 0 0 0 0 0 0
.................................................................................................TTTCACAGCCATTTTGATGAGTC....................................................... 23 2 1 20.00 20 20 0 0 0 0 0 0 0 0
................................................................................................CTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 19.00 19 14 4 0 0 1 0 0 0 0
.................................................................................................TATCATAGCCATTTTGATGAGTT....................................................... 23 1 1 19.00 19 14 0 3 1 1 0 0 0 0
.................................................................................................TATCAAAGCCATTTTGATGAGTT....................................................... 23 1 1 18.00 18 0 5 10 3 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGATT........................................................ 22 1 1 17.00 17 3 11 1 2 0 0 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGC........................................................ 22 2 1 17.00 17 17 0 0 0 0 0 0 0 0
.................................................................................................TATAACAGCCATTTTGATGAGTT....................................................... 23 1 1 17.00 17 0 10 6 1 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAA.................................................................................................. 20 0 1 16.00 16 11 4 0 0 1 0 0 0 0
.........................................................CGCTTCAAAGGGTTGTGAAATG................................................................................................ 22 2 1 16.00 16 16 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGCTTGATGAGC........................................................ 22 3 2 15.50 31 27 1 0 0 3 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATGAGT........................................................ 22 1 1 15.00 15 0 8 1 5 0 0 1 0 0
.................................................................................................TATCACAGCCATTTTGCTGCGTT....................................................... 23 2 1 15.00 15 0 9 6 0 0 0 0 0 0
.................................................................................................TATCACAGACATTTTGATGAGT........................................................ 22 1 1 15.00 15 4 1 2 2 6 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATCAGTT....................................................... 23 1 1 15.00 15 3 7 5 0 0 0 0 0 0
.................................................................................................TATCACCGCCATTTTGATGAGTT....................................................... 23 1 1 14.00 14 2 10 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGAAGAGTT....................................................... 23 1 3 14.00 42 10 10 13 7 1 1 0 0 0
.................................................................................................TATCACAGCCATTGTGATGAGTT....................................................... 23 1 1 13.00 13 1 7 5 0 0 0 0 0 0
.................................................................................................TAACACAGCCATTTTGATGAGTT....................................................... 23 1 1 13.00 13 9 3 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTA....................................................... 23 1 1 13.00 13 1 2 0 10 0 0 0 0 0
.................................................................................................TATCACAGCCAGCTTGAGGAG......................................................... 21 3 5 13.00 65 0 11 5 5 10 28 6 0 0
.........................................................CTCCTCAAAGGTTTGTGAAATG................................................................................................ 22 1 1 13.00 13 10 1 0 0 0 0 2 0 0
..................................................................................................ATCACAGCCATTTTGATGAGTC....................................................... 22 1 1 13.00 13 13 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGTGT........................................................ 22 1 1 13.00 13 2 9 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGCTGAGTT....................................................... 23 2 1 13.00 13 0 7 6 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTCTGATGAGTT....................................................... 23 1 1 12.00 12 4 1 5 2 0 0 0 0 0
.................................................................................................TAGCACAGCCATTTTGATGAGT........................................................ 22 1 1 12.00 12 1 7 0 4 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGTC....................................................... 23 2 1 12.00 12 11 1 0 0 0 0 0 0 0
.................................................................................................TACTACAGCCATTTTGATGAGTT....................................................... 23 2 1 12.00 12 12 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGCTTGATGAGCTT...................................................... 24 3 1 12.00 12 1 0 0 0 0 11 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGCGTT....................................................... 23 2 1 12.00 12 0 7 5 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTGGATGAGTT....................................................... 23 1 1 12.00 12 0 11 1 0 0 0 0 0 0
.................................................................................................CATCACAGCCATTTTGATGAGT........................................................ 22 1 1 11.00 11 6 4 0 0 1 0 0 0 0
.................................................................................................TATCACAGTCATTTTGATGAGT........................................................ 22 1 1 11.00 11 0 4 2 0 5 0 0 0 0
.................................................................................................TATCACAGCCTTTTTGATGAGTT....................................................... 23 1 1 11.00 11 1 4 5 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGA.......................................................... 20 0 1 10.00 10 1 0 0 1 4 0 4 0 0
.................................................................................................TATCACAGCCATTTTCATGAGTT....................................................... 23 1 1 10.00 10 2 4 2 2 0 0 0 0 0
.................................................................................................TATCACAGCAATTTTGATGAGTT....................................................... 23 1 1 10.00 10 3 3 3 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAATT....................................................... 23 1 1 10.00 10 1 2 4 2 0 1 0 0 0
.................................................................................................TATCACAGCCATTTTGAGGAGT........................................................ 22 1 3 9.67 29 3 10 7 8 0 1 0 0 0
.................................................................................................TCTCACAGCCATTTTGATGAGTT....................................................... 23 1 1 9.00 9 1 4 3 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGACTT....................................................... 23 1 1 9.00 9 1 4 3 0 0 1 0 0 0
...............................................................................................TCTATCACAGCCATTTTGATGAGTT....................................................... 25 2 1 9.00 9 8 0 0 0 1 0 0 0 0
.................................................................................................TATCACAGCCATTTTAATGAGT........................................................ 22 1 1 9.00 9 1 3 2 3 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGTTGAGT........................................................ 22 1 1 9.00 9 0 9 0 0 0 0 0 0 0
..............................................................................................ATCTATCACAGCCATTTTGATGAGTT....................................................... 26 3 1 9.00 9 9 0 0 0 0 0 0 0 0
......................................................................................................CAGCCATTTTGATGAGTT....................................................... 18 0 1 9.00 9 6 1 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCACTTTGATGAGT........................................................ 22 1 1 8.00 8 2 1 3 1 0 1 0 0 0
.........................................................TTCCTCAAAGGGTTGTGAAATG................................................................................................ 22 1 1 8.00 8 6 0 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGCC....................................................... 23 2 1 8.00 8 8 0 0 0 0 0 0 0 0
.................................................................................................TATCACTGCCATTTTGATGAGTT....................................................... 23 1 1 8.00 8 2 1 5 0 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGC........................................................ 22 2 1 8.00 8 8 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGTTGTGTT....................................................... 23 2 1 8.00 8 0 7 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGAGGAGTT....................................................... 23 1 3 8.00 24 8 9 2 4 1 0 0 0 0
.................................................................................................TTTCACAGCCATTTTGATGAGT........................................................ 22 1 1 8.00 8 8 0 0 0 0 0 0 0 0
..................................................................................................ATAACAGCCATTTTGATGAGTT....................................................... 22 1 1 8.00 8 8 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGTTGATTT....................................................... 23 2 1 8.00 8 0 7 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTTG...................................................... 24 1 1 8.00 8 3 2 0 2 1 0 0 0 0
.................................................................................................CATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 8.00 8 8 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGG........................................................ 22 1 1 8.00 8 0 3 1 1 0 0 3 0 0
.................................................................................................TATCCCAGCCATTTTGATGAGTT....................................................... 23 1 1 7.00 7 2 3 2 0 0 0 0 0 0
..........................................................TCCTCAAAGGGTTGTGAAATG................................................................................................ 21 0 1 7.00 7 2 1 2 0 2 0 0 0 0
.................................................................................................TAGCACAGCCATTTTGTTGAGTT....................................................... 23 2 1 7.00 7 0 5 1 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGCTA...................................................... 24 2 1 7.00 7 0 0 5 2 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATTAGTT....................................................... 23 2 1 7.00 7 0 2 1 4 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGATGAGGT....................................................... 23 2 1 7.00 7 0 1 4 2 0 0 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 7.00 7 7 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGATGAGT........................................................ 22 1 1 7.00 7 0 5 1 1 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGTTT...................................................... 24 1 1 7.00 7 7 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGATTT....................................................... 23 2 1 7.00 7 5 2 0 0 0 0 0 0 0
.................................................................................................TGTCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 7.00 7 7 0 0 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGC........................................................ 22 2 1 7.00 7 7 0 0 0 0 0 0 0 0
...................................................................................................TCACAGCCATTTTGATGAGT........................................................ 20 0 1 7.00 7 2 0 0 3 2 0 0 0 0
.................................................................................................TATCACGGCCATTTTGATGAGT........................................................ 22 1 1 7.00 7 0 3 1 1 2 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGTTT...................................................... 24 1 1 6.00 6 1 3 0 1 0 1 0 0 0
.................................................................................................TATCACAGACATTTTGATGAGGT....................................................... 23 2 1 6.00 6 0 0 6 0 0 0 0 0 0
.................................................................................................TATCACATCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 0 5 0 0 1 0 0 0 0
.................................................................................................TATCACAGCCATGTTGATGAGTT....................................................... 23 1 1 6.00 6 0 5 1 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGCTGTGAAATG................................................................................................ 22 1 1 6.00 6 6 0 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAATGT............................................................................................... 23 0 1 6.00 6 6 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAC......................................................... 21 1 1 6.00 6 2 0 0 0 0 0 4 0 0
.................................................................................................TATCACAGCTATTTTGATGAGT........................................................ 22 1 1 6.00 6 0 4 2 0 0 0 0 0 0
.................................................................................................TATCGCAGCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 0 0 1 4 1 0 0 0 0
.................................................................................................AATCACAGCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 4 1 1 0 0 0 0 0 0
.........................................................CGCCTCAAAGGGTTGTGAAAT................................................................................................. 21 1 1 6.00 6 6 0 0 0 0 0 0 0 0
.................................................................................................GATCACAGCCATTTTGATGAGT........................................................ 22 1 1 6.00 6 3 1 1 0 1 0 0 0 0
.................................................................................................TATCACAGCCATTTTGGTGAGT........................................................ 22 1 1 6.00 6 0 6 0 0 0 0 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGTGTT....................................................... 23 2 1 6.00 6 5 1 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTAGATGAGTT....................................................... 23 1 1 5.00 5 4 0 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGGGT........................................................ 22 1 1 5.00 5 0 3 0 2 0 0 0 0 0
.................................................................................................TATCACAGCGATTTTGATGAGTT....................................................... 23 1 1 5.00 5 1 2 0 2 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGTGTC....................................................... 23 2 1 5.00 5 3 2 0 0 0 0 0 0 0
.................................................................................................TATGACAGCCATTTTGATGAGTT....................................................... 23 1 1 5.00 5 0 4 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATTATTT....................................................... 23 2 1 5.00 5 0 5 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATATTGATGAGTT....................................................... 23 1 1 5.00 5 3 2 0 0 0 0 0 0 0
.................................................................................................TTTTACAGCCATTTTGATGAGTT....................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0 0 0
.................................................................................................TAGCACAGACATTTTGATGAGTT....................................................... 23 2 1 5.00 5 0 1 4 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGGTGAGGT....................................................... 23 3 1 5.00 5 0 2 3 0 0 0 0 0 0
.................................................................................................AATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 5.00 5 5 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATAAGT........................................................ 22 1 1 5.00 5 1 0 2 1 1 0 0 0 0
.................................................................................................TATCACAGCCATTTTGAAGAGC........................................................ 22 2 3 4.33 13 0 11 1 1 0 0 0 0 0
.................................................................................................TATCACAACCATTTTGATGAGT........................................................ 22 1 1 4.00 4 2 1 0 1 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGCT....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTATGATGAGTT....................................................... 23 1 1 4.00 4 1 2 0 1 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGGGAAATG................................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGCTGAGTT....................................................... 23 2 1 4.00 4 0 4 0 0 0 0 0 0 0
................................................................................................TTATCACAGCCATTTTGATGAGTT....................................................... 24 1 1 4.00 4 2 0 0 0 2 0 0 0 0
.................................................................................................TATCACAGCCAGGTTGATGAGT........................................................ 22 2 1 4.00 4 0 4 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGA........................................................ 22 1 1 4.00 4 1 2 1 0 0 0 0 0 0
....................................................................................................CACAGCCATTTTGATGAGTC....................................................... 20 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGCT....................................................... 23 2 1 4.00 4 2 1 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGGTGTGTT....................................................... 23 2 1 4.00 4 0 4 0 0 0 0 0 0 0
.........................................................CTACTCAAAGGGTTGTGAAAT................................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATCAGT........................................................ 22 1 1 4.00 4 1 1 0 1 1 0 0 0 0
.................................................................................................TAGCACAGCCATTTTGATGAGCT....................................................... 23 2 1 4.00 4 0 1 1 2 0 0 0 0 0
.................................................................................................TGTCACAGCCATTTTGATGAGCT....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGCGCT....................................................... 23 2 1 4.00 4 0 3 0 1 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAG......................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAA......................................................... 21 1 1 4.00 4 0 1 0 1 0 0 2 0 0
.................................................................................................TATCACAGCCATTTTGCTGAGCT....................................................... 23 2 1 4.00 4 0 2 1 1 0 0 0 0 0
.................................................................................................TATCACGGCCATTTTGATGAGTC....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACTGCCATTTTGATGTGTT....................................................... 23 2 1 4.00 4 0 4 0 0 0 0 0 0 0
.........................................................CGACTCAAAGGGTTGTGAAATG................................................................................................ 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGATTC....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATGACAGCCATTTTGATGAGT........................................................ 22 1 1 4.00 4 0 3 1 0 0 0 0 0 0
.................................................................................................GATCACAGCCATTTTGATGAGTC....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TAGCACAGCCATTTTCATGAGTT....................................................... 23 2 1 4.00 4 0 3 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCGTTTTGTTGTGTT....................................................... 23 3 1 4.00 4 0 4 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGTGTTGTGAAATG................................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
..................................................................................................AGCACAGCCATTTTGATGAGTC....................................................... 22 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATTAGTT....................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATGAGTTT...................................................... 24 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTAAAATG................................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGACGAGTTAC..................................................... 25 2 3 3.67 11 6 0 1 0 3 1 0 0 0
.................................................................................................TATCACACCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 2 1 0 0 0 0 0 0 0
.................................................................................................TATCATAGCAATTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGCAGAGT........................................................ 22 2 3 3.00 9 0 4 3 2 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATGAGC........................................................ 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTGGATGAGGT....................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0
................................................................................................CTAGCACAGCCATTTTGATGAGTT....................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCACTTTGATGAGC........................................................ 22 2 1 3.00 3 2 1 0 0 0 0 0 0 0
..................................................................................................AGCTCAGCCATTTTGATGAGTT....................................................... 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACTGCCAGGTTGATGAGTT....................................................... 23 3 1 3.00 3 0 2 1 0 0 0 0 0 0
................................................................................................CTATCACAGCCATTTTGATGAGTTT...................................................... 25 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................CGCTTCAAAGGGTTGTGAAAT................................................................................................. 21 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCAGAGCCATTTTGATGTGTT....................................................... 23 2 1 3.00 3 0 1 1 1 0 0 0 0 0
...............................................................................TCGCCTATTATCTACTCA.............................................................................. 18 0 1 3.00 3 2 0 0 0 0 0 1 0 0
.................................................................................................TATCACAGCCATTTTGCTGAG......................................................... 21 1 1 3.00 3 0 2 0 1 0 0 0 0 0
.........................................................CTCCTCAAATGGTTGTGAAATG................................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TGTTACAGCCATTTTGATGAGT........................................................ 22 2 1 3.00 3 3 0 0 0 0 0 0 0 0
................................................................................................CGATCACAGCCATTTTGATGAGTC....................................................... 24 3 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGAGC........................................................ 22 2 1 3.00 3 2 1 0 0 0 0 0 0 0
.....................................................................................................ACAGCCATTTTGCTGAGTT....................................................... 19 1 1 3.00 3 1 2 0 0 0 0 0 0 0
.................................................................................................TATCACGGCCATTTTGGTGTGTT....................................................... 23 3 1 3.00 3 0 1 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATGATTT....................................................... 23 2 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGGGTC....................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTCATGAGT........................................................ 22 1 1 3.00 3 0 2 0 1 0 0 0 0 0
.................................................................................................TATTACAGCCCTTTTGATGAGTT....................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGCGAAATG................................................................................................ 22 1 1 3.00 3 0 0 3 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGTGTG....................................................... 23 2 1 3.00 3 1 2 0 0 0 0 0 0 0
........................................................................................................................TCGTGCGAATCTCGGCAACT................................... 20 0 1 3.00 3 0 0 0 0 0 0 3 0 0
.................................................................................................TATCAGAGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 1 2 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAGATG................................................................................................ 22 1 1 3.00 3 1 0 2 0 0 0 0 0 0
.................................................................................................TATCACAGACATTTTGTTGAGTT....................................................... 23 2 1 3.00 3 0 0 3 0 0 0 0 0 0
.................................................................................................TATCACGGCCATTTTGATTAGTT....................................................... 23 2 1 3.00 3 0 1 0 2 0 0 0 0 0
................................................................................................CTATCACCGCCATTTTGATGAGTT....................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0 0 0
..................................................................................................ATCACAGCCATTTTGATGAGTTT...................................................... 23 0 1 3.00 3 1 0 0 0 2 0 0 0 0
................................................................................................CTAACACAGCCATTTTGATGAGTT....................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGAGTTTT..................................................... 25 1 1 3.00 3 1 1 0 0 1 0 0 0 0
.................................................................................................TATCACCGCCATTTTGCTGAGTT....................................................... 23 2 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTCATGATTT....................................................... 23 2 1 3.00 3 0 2 0 1 0 0 0 0 0
.................................................................................................TATCACTGCCAGTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0
..................................................................................................ATCACAGCGATTTTGATGAGTT....................................................... 22 1 1 3.00 3 0 0 0 0 3 0 0 0 0
.................................................................................................TATCACAGCCGTTTTGATGAGT........................................................ 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TATCACAGACATTTTGCTGAGTT....................................................... 23 2 1 3.00 3 0 2 0 1 0 0 0 0 0
.................................................................................................TAGCACAGCCAGTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 1 1 1 0 0 0 0 0
.................................................................................................TATAAAAGCCATTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 2 0 1 0 0 0 0 0
.................................................................................................TATTACAGCCATTTTGATGAGCT....................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTGTGATGAGT........................................................ 22 1 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TATAACAGCCATTTTGATGAGT........................................................ 22 1 1 3.00 3 0 2 0 1 0 0 0 0 0
.........................................................CGCCTCAAAGGGTTGTGAAA.................................................................................................. 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0
................................................................................................CTATCACAGCCATTTTGATGAGCT....................................................... 24 2 1 3.00 3 1 1 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGCTGAGT........................................................ 22 2 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TGTCTCAGCCATTTTGATGAGTT....................................................... 23 2 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAATTTGATGAGTT....................................................... 23 1 1 3.00 3 1 1 1 0 0 0 0 0 0
.................................................................................................TAGCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 3.00 3 0 2 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATGATTTT...................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGCTGCGT........................................................ 22 2 1 3.00 3 0 2 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCACTTTGAGGAGC........................................................ 22 3 3 2.67 8 8 0 0 0 0 0 0 0 0
...................................................................................................TCACAGCCAGCTTGATGAG......................................................... 19 2 2 2.50 5 1 0 0 0 1 2 1 0 0
.................................................................................................TATTACAGCCATTTTGATGTGTT....................................................... 23 2 2 2.50 5 3 1 1 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGAAGAGG........................................................ 22 2 3 2.33 7 0 2 5 0 0 0 0 0 0
.........................................................TTCTTCAAAGTGTTGTGAAATG................................................................................................ 22 3 5 2.20 11 8 0 0 0 0 1 2 0 0
.................................................................................................TATCACAGCCATTTTGATGATGT....................................................... 23 2 1 2.00 2 0 0 1 1 0 0 0 0 0
................................................................................................GTATCACAGCCATTTTGATGAGT........................................................ 23 1 1 2.00 2 0 0 0 0 2 0 0 0 0
..................................................................................................ATAACAGCCATTTTGATGAGT........................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TTTCACAGCCATTTTGATGATTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATGAGCT....................................................... 23 2 1 2.00 2 1 0 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCAGTTTGATGTGTT....................................................... 23 2 2 2.00 4 0 4 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGATCAG......................................................... 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTTATTAGT........................................................ 22 2 1 2.00 2 0 0 2 0 0 0 0 0 0
.................................................................................................GATCACATCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................................................TTTCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCATGTTGCTGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAA................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................................................AATCACAGCCCTTTTGATGAGTT....................................................... 23 2 1 2.00 2 1 1 0 0 0 0 0 0 0
.................................................................................................TATCATAGCCATTTTGATGAGT........................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGACATTTTGATGAG......................................................... 21 1 1 2.00 2 0 0 1 1 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGAAATGA............................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCAGGTTGATGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................CCCCTCAAAGGGTTGTGAAATG................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCAAAGCCATTTTGATGAGCT....................................................... 23 2 1 2.00 2 0 1 1 0 0 0 0 0 0
...............................................................................................TCTATCACAGCCATTTTGATGAGT........................................................ 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................CGCCTCAAAGGGTTGTGGAATG................................................................................................ 22 2 1 2.00 2 1 0 1 0 0 0 0 0 0
.................................................................................................TAGCACAGCCCTTTTGATGTGTT....................................................... 23 3 1 2.00 2 0 0 1 1 0 0 0 0 0
.................................................................................................TATCACCGCCATTTTGATTAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................CTCCTCAAAGGGTTGTGCAATG................................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0
.................................................................................................TATCACAGCCATTTTGTGGAGTT....................................................... 23 2 3 2.00 6 0 6 0 0 0 0 0 0 0
.................................................................................................TGGCACAGCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
.................................................................................................TATCACAGCCCTTTTGATGATT........................................................ 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TACCACAGCCATTTTGATTAGTT....................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TAGCAGAGCCATTTTGATGAGTT....................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0
..........................................................TCTTCAAAGTGTTGTGAAATG................................................................................................ 21 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................TATCCCAGCCATTTTGATGAGT........................................................ 22 1 1 2.00 2 0 1 1 0 0 0 0 0 0

Anti-sense strand reads

TTGCTAACCTACGATTCGGTTGTTCACAAGCACTAGGTTCGGTATTAAGAATGCATTGAGGAGTTTCCCAACACTTTACAGCGGATAATAGATGAGTATAGTGTCGGTAAAACTACTCAAAGCACGCTTAGAGCCGTTGAATAAAGTACATAAAGTTTGTATAAAGTATTAGCTA

****************************************...((((.((((.(((((.((((((((((((((.(((................))).)))))))).)))))).))))).)))).)))).....****************************************** 		Read size # Mismatch Hit Count Total Norm Total M056

embryo

 V120

male body		 M026

head

 V046

embryo

 V052

head
........................................................CGAGGAGTTTCCCGACACTAT.................................................................................................. 21 3 1 12.00 12 11 1 0 0 0
.........................................................GAGGAGTTTCCCGACACTAT.................................................................................................. 20 2 1 7.00 7 3 2 2 0 0
........................................................CGAGGAGTTTCCCGACACTGT.................................................................................................. 21 3 1 1.00 1 1 0 0 0 0
.......................................................TTGAGGAGTTTCCCAACACTTT.................................................................................................. 22 0 1 1.00 1 1 0 0 0 0
.......................................................TTGAGCAGTTTCCCGACACTAT.................................................................................................. 22 3 2 0.50 1 0 0 0 1 0
........................................................TGAGCAGTTTCCCGACACTAT.................................................................................................. 21 3 2 0.50 1 0 0 0 0 1
.........................................................GAGGAGTTTCCCGACACTAA.................................................................................................. 20 3 6 0.17 1 1 0 0 0 0
.........................................................GAGTAGTTTCCCGACACTAT.................................................................................................. 20 3 9 0.11 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droYak3 3R:15188542-15188716 + dya-mir-13a Known_mirbase AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TCGGCAA---CT--------T-ATT-TCAT----------------------------------------------GTA-----TTT--CAAACATATTTCATAATCGAT
droEre2 scaffold_4770:10769361-10769528 - der-mir-13a Known_mirbase AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGAC----------------------------------------------AC-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TAAAAAG---CG----------------------------------------------GG----------------TTA-----A-G--AAAACATATTTCAAAAGCGAT
droSec2 scaffold_0:10705018-10705184 + dse-mir-13a Known_mirbase AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TGGTCAG---CG----------------------------------------------GA----------------TCG-----A----AAAACATATTTCATAACCGAC
droSim2 3r:9985569-9985737 + dsi-mir-13a Known_mirbase AACGA-----------TTGGATATGCTAAACCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TCGGCAG---CG----------------------------------------------GA----------------TCG-----A----AAAACATATTTCATAACCGAC
dm3 chr3R:11243222-11243388 - dme-mir-13a Known_mirbase AACGA-----------TTGGA--TGCTAAACCAACAAGTGTTTGT---G-ATC-----CAAGCC----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------GCGGCAG---CG----------------------------------------------GA----------------TCA-----A----AAAACATATTTCATAACCGAC
droEug1 scf7180000409281:109499-109667 + AACGA-----------TTGAG--AGCTAAGCCAACAAGTGTTCGT---G-ATC-----CGATAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT------TCGGCAT---CT----------------------------------------------GG----------------TCA-----AAG--TTATTATATTTCATAACCGAT
droBia1 scf7180000302136:835515-835681 - AACGG-----------GGGCG--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CAACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CC----------------------------------------------GG----------------TCA-----A----AAATCGCATTTCGCAACCGTT
droTak1 scf7180000415769:1925938-1926106 + AACGG-----------TGGAG--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CAACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCA-----CTA--AAATCATATTTCGTGACCGTT
droEle1 scf7180000491080:1007089-1007259 - AACGAG----------ATAAA--AGCTCAACCAACAAGTGTTCGT---G-ATC-----CGACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCAGCAA---CT----------------------------------------------GG----------------ATAG---ACAT--AAATCAGTTTTTATAAGCGCT
droRho1 scf7180000779250:92622-92795 + AATGGG----------ATAAA--AGCTAAGCCAACAAGTGTTCGT---G-ATA-----TAT-ATGTC-------------------GGAT--------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCT-----A----AAATCAAGTTTCATAAGCGAT
droFic1 scf7180000452523:592232-592403 - AAGGCGAAAG------CCAAA--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CCATAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCA-----A----ATATCAATTTCCATAACCGAT
droKik1 scf7180000302639:1443181-1443331 + --------------------------TAAGCCAACAAGTGTTTGT---G-ATC-----CAAGAT--------------------------------------------GTCT-GATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT------TCGGCAG---CC----------------------------------------------AGAAGGAGT--------------------------ACCGCTTCGCAA---AT
droAna3 scaffold_13340:12827572-12827762 - dan-mir-13a Known_mirbase AAT---------------------GCTACGCCAACAAGTGTGCTACAAGAATCCCCTC--------------------------------AAA-AA--AGGACGATCCATCG-AGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TCG--TCA------GAA---------AACCGTC---A---GAAAGGGG-CGCGGC--GGCA-----G------------------------------------GATGTCATAACCGAT
droBip1 scf7180000396691:1710469-1710651 - AA---------------------AGCTGCGCCAACAAGTGTTCTC---GAAGCCCCCCTA----------------------------------AC--CCGAAGATCCATCC-AGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTCCA--A----A---AA--------ATC-G-CATCGT------GGGG-CGCGGC-----AG---------------------------------------GCGATTTCGTAACCGAT
dp5 2:9824872-9825071 + dps-mir-13a Known_mirbase C--CA-----------TGG---------GCCCAACAAGTGTTCGG---C-TCG-----TACTTT-TT-------------------GGACAAAAAAAAAAAACCGTCAGCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGG-CCA------GCA---------ATCCATC---AT-CGATCGGGG------CAGGGCAG---G--ATGGAGC--------------------------------ACAGAGTGGAC
droPer2 scaffold_0:10660024-10660211 - dpe-mir-13a Known_mirbase A--------------------------------ACAAGTGTTCGG---C-TCG-----TACTAT-TT-------------------GGACAAAAAA--AAAACCGTCATCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGG-CCA------GCA---------ATCCATC---AT-CGATCGGGG------CAGGGCAG---G--ATGGAGC--------------------------------ACAGAGTGGAC
droWil2 scf2_1100000004902:2143163-2143370 - dwi-mir-13a Known_mirbase ATTGCACTCTGC----AAGTG--AGTGGAGCCAACAAGTGTTTTTTTGGAATCCGTTCCGGCAA----------------------------AAGA---------T----GGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT------CCTGCAA---CA----------GTA---TT-CGAAATGGATGGTA------------------------TCCTT---------------AGAATAT----GTGAATTGAC
droVir3 scaffold_13047:13335593-13335763 + dvi-mir-13a Known_mirbase AGATA--ACG--TCGCTTCGA--TAC------------------------------------------------------------------GTAA--AGACCAACCCACTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT--T----A---AAT--------TC-ATT---GC-CCT-------CGT--C--GGCAGAAT-GG----------------GC-------------------TGGCAAGGACGAT
droMoj3 scaffold_6540:10568280-10568503 + dmo-mir-13a Known_mirbase TACAA--------------CA--AACACAACCAACAAGTGTTTGC---A-TCT-----CATTAT-ATG------------------GGACACTTAACGATCTCCGCCCATTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TTGCT--TTCAGCAT-----------------T---GTCCCATCCGTTTTGTG------------------------TCACTGGATTATCCACCTCAATCTCCATCTTCATTTGCATT
droGri2 scaffold_14906:4357592-4357848 - dgr-mir-13a Known_mirbase TACAA--------------------CAAAGCCAACAAGTGTTTGT---A-TCT-----CATTAT-TTTATTCTTGCATACATCTGCAGACTGTGAGCGAACCAAGCCCACCC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT--TTCA-------TCACAGTGATC-ATT---GTCCCT-------CGC--CGGGGCCG---G--TTCGTGCAGTCGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGTGTGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droYak3
AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TCGGCAA---CT--------T-ATT-TCAT----------------------------------------------GTA-----TTT--CAAACATATTTCATAATCGATSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23135057.0035057441354185946623219959093340000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................2214356.0043563943711765416081477771000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................2311380.001380011361351000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................2211187.001187069602114420000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241331.003310151303537104100000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221274.00274011915311000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................211256.0025670343018307040000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................221215.002152020331600000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191157.0015720358325930000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................21141.0041203621000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18141.004110011101900000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21137.0037032500000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24135.00350015631010000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20132.0032012820100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................24131.0031001651810000
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21130.0030041461500000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................23127.0027002212200000
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19126.0026146301200000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAA...............................................................................................................................................................................20116.0016011100400000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23113.0013001010200000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC.................................................................................................................................22113.0013001300000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20110.001044101000000
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1819.00900620100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC.................................................................................................................................2318.00800800000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................2418.00801302200000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................2218.00830011300000
...............................................................................................................................TCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................2117.00702220100000
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2017.00702203000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGT............................................................................................................................................................................2316.00600600000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................2116.00640200000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................2214.00400110200000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTC.................................................................................................................................2014.00400400000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2114.00420001100000
.....................................................................................................................................................TCGCCTATT--A-TCTACTCA........................................................................................................................................................1813.00310200000000
.................................................................................................................................................................................................TCGTGCGAA--TC------TCGGCAA---CT--------..........................................................................................2013.00330000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2313.00302100000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................2513.00301100100000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAA................................................................................................................................................................................1912.00200100100000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGA............................................................................................................................................................................2312.00200200000000
droEre2
AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGAC----------------------------------------------AC-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TAAAAAG---CG----------------------------------------------GG----------------TTA-----A-G--AAAACATATTTCAAAAGCGATSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23143373.0043373224714749423340366811738839
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22114339.001433913171875135055514290991
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2111143.00114312846721988700
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................231778.0077855728201910
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241394.0039426177479131220
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221273.0027316492410120
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................221235.002350210600190
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................221189.0018915976912770
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................231164.00164012011600
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191148.001481247443510
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................211101.00101861200030
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................23195.0095213020780
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................24193.0093541652340
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24185.008514231305300
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19154.005465000421
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20152.0052153500290
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18149.0049101070310
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24146.004671400340
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21145.0045517230180
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22129.002931301210
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20126.002619210130
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................19112.001210010100
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................25111.00110040070
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................20111.001110010000
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................18110.00100001090
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................18110.00100013060
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2018.0081100060
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATT.............................................................................................................................................................................2216.0060004020
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC.................................................................................................................................2315.0050400010
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAA...............................................................................................................................................................................2015.0050010040
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................2215.0050011120
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2314.0041100020
...............................................................................................................................TCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................2114.0041001020
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC.................................................................................................................................2214.0040400000
.............................................................................................................................................................................CACAGCCATTTTGATGAG...................................................................................................................................1814.0040000040
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2113.0030100020
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2413.0031101000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAT...................................................................................................................................2113.0030001020
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................2113.0030011010
..........................................................................................................................................................................TATCACAGCCATTTTGAGT.....................................................................................................................................1972.001410002110
droSec2
AACGA-----------TTGGA--TGCTAAGCCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TGGTCAG---CG----------------------------------------------GA----------------TCG-----A----AAAACATATTTCATAACCGACSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23146028.00460286065463350711369
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................2216525.00652543510414434543
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................211597.00597571448478
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................221491.0049117637791
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191290.002900022367
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241165.00165488172
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................22168.006858082
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21158.005830523
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24152.0052313612
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19152.005270045
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18151.005100942
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................23137.003711278
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23135.0035101123
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................24132.0032011813
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20131.003140027
...............................................................................................................................TCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................21127.002710818
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21127.002726001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................22113.00130058
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22112.001210110
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................25111.00112153
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................18110.001000100
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................2016.0066000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................2015.0050050
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................2214.0040022
..............................................................................................................................CTCCTCAAAG-GGTTGTGTT................................................................................................................................................................................1914.0042002
..............................................................................................................................CTCCTCAAAG-GGTTGTGAA................................................................................................................................................................................1914.0040040
..................................................................................................................................TCAAAG-GGTTGTGAAATG.............................................................................................................................................................................1814.0041003
..............................................................................................................................CTCCTCAAAG-GGTTGTGA.................................................................................................................................................................................1814.0040013
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAA...............................................................................................................................................................................2013.0031011
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2013.0030012
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................2113.0030030
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................1813.0030012
..........................................................................................................................................................................TATCACAGCCATTTTGAGT.....................................................................................................................................1952.20111046
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2412.0020020
..........................................................................................................................................................................TATCACAGCCATTTTGATGAT...................................................................................................................................2112.0021001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................2612.0020020
..........................................................................................................................................................................TATCACAGCCATTTTGATGT....................................................................................................................................2012.0020002
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................2412.0020011
...............................................................................................................................TCCTCAAAG-GGTTGTGAAA...............................................................................................................................................................................1912.0021001
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATA.............................................................................................................................................................................2211.0010010
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................2111.0011000
..............................................................................................................................................................................ACAGCCATTTTGATGAGC..................................................................................................................................1811.0010001
..........................................................................................................................................................................TATCACAGCCATTTTGATA.....................................................................................................................................1921.0020002
...............................................................................................................................TCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................2011.0010001
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC.................................................................................................................................2211.0010001
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGG..................................................................................................................................2111.0011000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAAA..................................................................................................................................2211.0011000
..........................................................................................................................................................................TATCACAGCCATTTTGATT.....................................................................................................................................1911.0011000
droSim2
AACGA-----------TTGGATATGCTAAACCAACAAGTGTTCGT---G-ATC-----CAAGCC----------------------------------------------AT-AGTTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------TCGGCAG---CG----------------------------------------------GA----------------TCG-----A----AAAACATATTTCATAACCGACSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................2316948.006948160210460112832914118621119338485400001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................2211889.00188919962514339734131314131767300000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2111309.001309291492162872000164300000
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................181646.0064610006957500000000001
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................191288.002881073001316400000100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................201240.00240260032818000111000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................221169.00169100156238000109700000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24176.007600010061029224400000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................25158.00580011000729162200000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................19147.0047602011000043300000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................26140.0040000000422292100000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................22137.0037200281200020200000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................24126.00260001100000201300000
..........................................................................................................................................................................TATCACAGCCATTTTGA.......................................................................................................................................17426.0010400000012165962000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18124.0024700002000141000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21121.0021200140400000100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCG..............................................................................................................................26119.0019000001900000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22118.0018130000000000500000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................22118.0018100200000006000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................21116.001641110700020000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................21114.0014140000000000000000
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21111.001100020001100700000
..........................................................................................................................................................................TATCACAGCCATTTTG........................................................................................................................................1649.2537000000100036000000
...............................................................................................................................TCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................2118.00800020300000300000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAA................................................................................................................................................................................1918.00800000800000000000
.................................................................................................................................................................................GCCATTTTGATGAGTT.................................................................................................................................1618.00800000000017000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGA.................................................................................................................................................................................1817.00700000700000000000
.....................................................................................................................................................TCGACTATT--A-TCTACTCA........................................................................................................................................................1817.00700500200000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................2315.00510000000000400000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAA...............................................................................................................................................................................2015.00500000500000000000
..........................................................................................................................................................................TATCACAGCCATTTT.........................................................................................................................................1554.2021000000001119000000
...........................................................................................................................................................................ATCACAGCCATTTTGATG.....................................................................................................................................1814.00400000400000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCAA................................................................................................................................2414.00400000000004000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGG....................................................................................................................................2014.00440000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................2414.00400020000010100000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGT............................................................................................................................................................................2313.00300001000010100000
...............................................................................................................................TCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................2013.00310000100010000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................2213.00320000000100000000
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1813.00300000000100200000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................2013.00300000300000000000
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................1913.00310001000000100000
...............................................................................................................................TCCTCAAAG-GGTTGTGAA................................................................................................................................................................................1813.00300000300000000000
.................................................................................................................................................................................................TCGTGCGAA--TC------TCGGCAG---....................................................................................................1813.00300300000000000000
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2412.00200000100000100000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTA................................................................................................................................2012.00200000000101000000
.........................................................................................................................................................................ATATCACAGCCATTTTGA.......................................................................................................................................1832.00600000600000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTTCG..............................................................................................................................2512.00200000200000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCA.................................................................................................................................2312.00200000000002000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2312.00200020000000000000
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2012.00200000000000200000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTAA...............................................................................................................................2112.00200000000002000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATGTCG..........................................................................................................................................................................2512.00200001100000000000
.................................................................................................................................................................................................TCGTGCGAA--TC------TCGGCAG---CG----------------------------------------------....................................................2012.00220000000000000000
..........................................................CAAGCC----------------------------------------------AT-AGTTCTTACGTAA....................................................................................................................................................................................................2111.00100000000000100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGT....................................................................................................................................2011.00100000000001000000
dm3
AACGA-----------TTGGA--TGCTAAACCAACAAGTGTTTGT---G-ATC-----CAAGCC----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTCGACTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TC------GCGGCAG---CG----------------------------------------------GA----------------TCA-----A----AAAACATATTTCATAACCGACSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................231165783.0016578300009944201181091664182401010603611605451917619748245746586311255633819740106192233306299727042181904227600000000000000000566728392216971422587164946183235822274463439755126159146205542879371792267136290424484076114561020767771101910881474048225943814701652392123400001000207332938646478823444743326123282716000005031221715493945439603303492116876362211509418925137735014260824210483919351634000164193600000462400000270402138478691679371461577639292287400970000308937882354167299532349272329803850466832023252440100264587409060473985712313960432391311053946608148821441791103391329712848396867632585305395138851089541105673243661171317191108277191428796147169253542177741607631344543652803132852271016516757514304837
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22149902.0049902000089301122131350109301350137130334545501920193817111420812773252256662331272016503801597000000000000000002216151635532613015367201214474318815072717948621522354431167145310923291774568715712217303241742931245908354206523020002100020241932201211312106189106800000239225124932105608591385682332542144499651412226711033701907811660007110120000014130011042714962282581112212518103511400131100177237020311115616131914472974164312948151616706208192572715209013385419158260300105157215278310180432522114411871272159821119135715066133079872532234232271901214912227482613210744524351992055231165468416641384689226268850
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2117096.007096000038200010100150021000090000212289299105400101001001002212105059400000000000000000274211840021012136717201224351727106820091843123301073890188036197923868444000000000020200000000000000000000060127165066207834912314214011621206110256101000000030000000000000000500021340309100000007801263713011377334925400113010112004023310862991181101422100100205391360103220114116728210711100140106251421737411740
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................2214149.004149000000144200000000000000000366710516223050000000000200100000000000000000000000000001001761867501502207203400203141300001720417720013703034915211400000000005113878200000001000000000000076180305642828113177261192421340000019000200000000000000000000000140000000000100000000144122033100031304120008002012002000100010000000005270102949210974241285200001321021000202300120110004106226151106300
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................2412296.00229600002100100100000010100000403000000011000120100021100000118100000000000000000201446319180010015056040110014100343202331001220404290251473800000000001041810021150102000000210900617205200341465112378096300870971013000306100000200000001322732101320203200110003746128210013180425111511130121130132012229142315221818224110625975763514620135035241591590144556411232817501452122006191320
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................2012048.00204800000000000000100400000100021110788643280000000000000000000004110000000000000000001006000000000114007006720640000000010001337650460181633738217839001400000100000000000000000000000000114162066223297109112168116029000101180000000000000000000000000000000001000022000000000003001004202000001100000000000000035000813000009974701000000201000000004000000000006600000011000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................2411450.001450000000000000000000000420002000000000111110300526533410000000000000000000000000014310610000071250101054112111000130116402022911742114000000000021071123620001500000000111170640440017431480360693000003916180001048000009500000021161202123210190000320035014000055000401140010010110020025670305750716739411211112151810174202152210100241029914010100030000510131000400
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................1911363.00136300000000000000100000000000200242411102220001000004230100000000000000000000000010030000000000000001121000000000000000005506043291200100000000001116391520332320101000002061003848022004542460901100000016230100000000000000000000010721130321104000000005998031700011616051200030020210316001010363034124910361470006324541561573111021510013030101011000000001410100101000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................221656.006560000401232000000000000000000000000000000002010001100000000000000000000000000000032000000020015001010000100010020100001860403618031960000000000000000000000000000000110001221010004292191310312000003100000000000000000000000000000000000000000000000000031000324100000011000000000120101937114306218560000135940100027330011100000000000000000500000001100
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................181535.0053500000000000000000000010000002212425300000000000000000000000000000000000000000011000000000000000010001004000000000100500210000002302100210000000000000000000000000000000006046052124247943120000022000000000000000000000000000000000000000000000001000100000000000000000000001000000000000110000025010000000000000000000000000000000000000000001
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................191479.004790000000000000020060000000001971317021000000000000000000000110000000000000000000000000900000024009010102800000000001000110100020612200320000000000000000000000000000000082002111187151041721010006000000000000000000000000000000000000000000000000101500003801110000900000000000000001000000000007573100100200000000000000000000000008110000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................251450.004500000000000000000000000000000000000221100030300023001000000000000000000000000000009000400000100400000012000100002100202000000001022000000000001512033130100000000000000111206002407160700000031300000000100000190000000000000310032013000100000100000001100000101000000000000000263810272826258101000225112200456440100005215100000000000004110000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................231431.00431000000000420001000000000000000000000000000000000000000000000000000000000000000001102500030000010000111800000000100010200202140202000000000000001000010000100000000000017707007717060132000002800000000000000000000000000000000000000000010000340230000250200000200010000001000032201032141801201915143565911005111001101000010000000000110010101100
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................221345.0034500000000000000200000001000100000000000000110000010010000000000000000000000000000200300000004002000000130000000000000024010217030200000000000000000110000000000000000001112010003803060300000030000000010000000000000000200000010001100000000001101840013801110012110010102054100511110376821309101013130310023430411101100101000000000100100201400
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................231337.0033700002000111020000000000000000000000000100000000020000000000000000000000000000110000000001000000001000200100000101010010000100202100000000000000000000000200000010000036050001304045045400000101000000000000000000000000001000000000000000000002000000013000000000001000000000101368316141452021413181931100022320130300000000000000000100000002000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................221302.003020000100000010000000000000000000000000000000000003010000000000000000000000000000000001000000101001000150102000000000000000001000210000000000000000120100000000000010004504000903035133100000160000000000000000000000000000000000000000000000000011000046040110110011010000010001044327592010118172641100020102113300000000000000000000000001100
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................181301.0030100000000000000000000000000100000000020000000011100010000000000000000000000000000000000000000000000000000000000000000210300280102000000000001220000000000000000000011091309000200130003000000411000000000000000000000020010000001000000000000030115100115283510010800010100513201062921009231000895190400000010000100000100000000000200000000001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................231231.002310000400243030000000000100000000000000000000000000010000000000000000000000000000000000000410000000000030000000010000031030323010410000000000000100000000000000000000001016030071117190130000001700000000010000000000000000000000000000010001000100010000480101000000000000000000003000242001007101051001013000200000312100100000000500000003000
...............................................................................................................................TCCTCAAAG-GGTTGTGAAATG.............................................................................................................................................................................211217.0021700001000000000000000000000030140030000000000000000000000000000000000000000000000200020000002022010001200000000001001010101120000000000000000120000000000000000000000007043310140578150000070000000000000000000000000000000000000000000000023001000030000000040000010000000000000000001000813718133030000003038000001000000000011700200000000
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................211192.00192000000000000000000000000000010000000000000000000000000000000000000000000000000001202112100001102200222745000020004350100002010613013000000000000000000000000000000000010220200230410000000004000000000000000000000000000000000000000000000003600100001400000000000000000000000331000000000011150500000000000000000000100000000100000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................261192.0019200000000000000000000010000000000000103000000010010000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000150000201000200000000000001000001000000000000001010000003000001400000000000001020010700000000000000000000000000000000000000000018239152228910000000012000014201000000218000000000000000010000000
..............................................................................................................................CTCCTCAAAG-GGTTGTGAAAT..............................................................................................................................................................................211163.0016300000000020000000000000000000134001000000000000000000000100000000000000000001120155532000001017000022500000000131000000000000011000000000000040000000000000000000000061602204413072650000020000000000000000000000000000000000000000000000012000000000000000000000100000000000000000000000121317510000000000000000000000000010100100000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221142.001420000100000010000010000000000000000000000000000000000100001000000000000000000012010036000000000100100080000000012000000000000000000000000000000000000000000000000000006100100504000200000010010000000000000000000000000000000000000000000022001000020000100000000000000001001272907190000012232300002101111002000000000000000000000003000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................241138.001380000000000010000000000000010000000000000001000000000000000000000000000000000000001010000000000100000050001000000100000010005010430000000000101000000000000000000000001301001603020200001040000000000000000000000000003000000001000000420013001000037100000040000002010000100203010100100343155110000000011100001200000000000500000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTATC..............................................................................................................................26198.009800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006632000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGA.......................................................................................................................................17493.7537500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050300000000000000010000000000000000000000000000010000000000000000000000000000000000000000000010110274004538000071161715300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................21179.00790000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000010000000000000001000000001005000000000000000000000000000000000000770400280105050000005000000000000000000000000000000000000000000000000000000001301000000000000000000000020000000000020310000020000000000000000000000000100000000000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20177.0077000000000000000000000000000000470100000010000000000000000000000000000000000000000000000000000000026200000000000110000000000000021000000000000000000000000000000000000240100090401000000001000000000000000000000000000000000000000000000002100000000000000001000000000000000230202010100003061110000000000000000000000000000000000000000
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................18175.0075000000000000000000000000000010420000000000000000000000000000000000000000000001000000000000000000000000000000000000000001000000200000000000001000000100000000000000000350400120410020000000000000000000000000000000000000000000000000000003300000000000000000000000000000000451202010010010144700000000000100000000000000000000000000000
droEug1
AACGA-----------TTGAG--AGCTAAGCCAACAAGTGTTCGT---G-ATC-----CGATAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAG--TT------TCGGCAT---CT----------------------------------------------GG----------------TCA-----AAG--TTATTATATTTCATAACCGATSizeHit CountTotal NormTotal
No Reads
droBia1
AACGG-----------GGGCG--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CAACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCCACT--G-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CC----------------------------------------------GG----------------TCA-----A----AAATCGCATTTCGCAACCGTTSizeHit CountTotal NormTotal
No Reads
droTak1
AACGG-----------TGGAG--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CAACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTATT--A-TCCACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCA-----CTA--AAATCATATTTCGTGACCGTTSizeHit CountTotal NormTotal
No Reads
droEle1
AACGAG----------ATAAA--AGCTCAACCAACAAGTGTTCGT---G-ATC-----CGACAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTCCC-ACT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCAGCAA---CT----------------------------------------------GG----------------ATAG---ACAT--AAATCAGTTTTTATAAGCGCTSizeHit CountTotal NormTotal
No Reads
droRho1
AATGGG----------ATAAA--AGCTAAGCCAACAAGTGTTCGT---G-ATA-----TAT-ATGTC-------------------GGAT--------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGCCTATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCT-----A----AAATCAAGTTTCATAAGCGATSizeHit CountTotal NormTotal
No Reads
droFic1
AAGGCGAAAG------CCAAA--AGCTAAACCAACAAGTGTTCGT---G-ATC-----CCATAT----------------------------------------------AT-AATTCTTACGTAACTCCTCAAAG-GGTTGTGAAATGTTGTCTGTT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TT------TCGGCAG---CT----------------------------------------------GG----------------GCA-----A----ATATCAATTTCCATAACCGATSizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------TAAGCCAACAAGTGTTTGT---G-ATC-----CAAGAT--------------------------------------------GTCT-GATTCTTACGTAACTCTTCAAAG-GGCTGTGAAATGTTACC-GTT--A-TCTATCCATATCACAGCCATTTTGATGAGTTCCGTGTGAA--TT------TCGGCAG---CC----------------------------------------------AGAAGGAGT--------------------------ACCGCTTCGCAA---ATSizeHit CountTotal NormTotal
No Reads
droAna3
AAT---------------------GCTACGCCAACAAGTGTGCTACAAGAATCCCCTC--------------------------------AAA-AA--AGGACGATCCATCG-AGTTCTTACGTAACTCCTCAAAG-GGCTGTGAAATGTTGCC-ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGGGAA--TCG--TCA------GAA---------AACCGTC---A---GAAAGGGG-CGCGGC--GGCA-----G------------------------------------GATGTCATAACCGATSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23122015.0022015284667547844153759788
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................2217585.0075851605589312511045419
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................211713.0071320152749593
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241490.00490790716130195
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................231461.0046104510613
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................221134.00134011409011
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................22198.009833570017
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24162.0062225213416
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................19157.00570824007
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20152.005251504127
..............................................................................................................................CTCCTCAAAG-GGCTGTGAAATG.............................................................................................................................................................................22150.005081032117
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19143.00432504032
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24128.00280007021
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21128.00282151217
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18123.00230011516
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21121.00211070004
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20119.00190120106
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................23118.0018071307
..........................................................................................................................................................................TATCACAGCCATTTTGATGAT...................................................................................................................................21117.00170000017
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23115.0015111309
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................25113.0013190003
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................24111.0011120305
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22110.0010001108
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2019.009020007
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................2217.007000205
...............................................................................................................................TCCTCAAAG-GGCTGTGAAATG.............................................................................................................................................................................2116.006300300
..............................................................................................................................CTCCTCAAAG-GGCTGTGA.................................................................................................................................................................................1816.006100401
..............................................................................................................................CTCCTCAAAG-GGCTGTGAA................................................................................................................................................................................1916.006001410
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................1916.006010104
..........................................................................................................................................................................TATCACAGCCATTTTGATGT....................................................................................................................................2016.006000105
..............................................................................................................................CTCCTCAAAG-GGCTGTGAAAT..............................................................................................................................................................................2115.005131000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2115.005100004
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................1814.004110002
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1814.004040000
..............................................................................................................................CTCCTCAAAG-GGCTGTGAAA...............................................................................................................................................................................2014.004010201
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2314.004110002
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................2514.004000211
..........................................................................................................................................................................TATCACAGCCATTTTGAGT.....................................................................................................................................1943.00120000012
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................2613.003030000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC.................................................................................................................................2313.003030000
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2413.003030000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTG...............................................................................................................................2533.009000207
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC.................................................................................................................................2313.003030000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................2113.003020001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCA.................................................................................................................................2313.003010002
..........................................................................................................................................................................TATCACAGCCATTTTGATGATC..................................................................................................................................2212.002000200
............................................................................................................................................................................TCACAGCCATTTTGATGAGTC.................................................................................................................................2112.002020000
droBip1
AA---------------------AGCTGCGCCAACAAGTGTTCTC---GAAGCCCCCCTA----------------------------------AC--CCGAAGATCCATCC-AGTTCTTACGTAACTCTTCAAGG-GGCTGTGAAATGTTGC--ATT--A-TCTACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTCCA--A----A---AA--------ATC-G-CATCGT------GGGG-CGCGGC-----AG---------------------------------------GCGATTTCGTAACCGATSizeHit CountTotal NormTotal
No Reads
dp5
C--CA-----------TGG---------GCCCAACAAGTGTTCGG---C-TCG-----TACTTT-TT-------------------GGACAAAAAAAAAAAACCGTCAGCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGG-CCA------GCA---------ATCCATC---AT-CGATCGGGG------CAGGGCAG---G--ATGGAGC--------------------------------ACAGAGTGGACSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23156311.005631101841297839000899764231911075
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22115200.001520007342925767412772500731016
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................2313063.003063022672379631000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................2211455.00145500479966280000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2111058.00105809190549492715012
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................2411054.001054038408412391487002
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221368.00368014212795220000
..............................................................................................................................CCCATCAAAC-GGTTGTGAAATG.............................................................................................................................................................................221333.00333045493217100009
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191187.00187017591830000
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................201160.001600275119180000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................211160.00160056794120000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................241133.00133017844460000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................241119.00119086328693002
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21180.00800831201720002
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19151.0051013329240000
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18146.0046002013310000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................23140.004000286510000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22134.003404518070000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20134.0034021114160000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................21125.002500718000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23124.002400106530000
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................20123.002303116110001
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC.................................................................................................................................22117.001700134000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC.................................................................................................................................23116.001600142000000
..............................................................................................................................CCCATCAAAC-GGTTGTGAAA...............................................................................................................................................................................20115.00150251160000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC.................................................................................................................................23113.001300111010000
..............................................................................................................................CCCATCAAAC-GGTTGTGAAAT..............................................................................................................................................................................21112.00120252210000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................23110.00100307000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24110.00100033130000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22110.00100002620000
...............................................................................................................................CCATCAAAC-GGTTGTGAAATG.............................................................................................................................................................................2119.0090500400000
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................1919.0090215100000
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1819.0090140220000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2119.0090108000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGC..................................................................................................................................2117.0070007000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................2017.0070502000000
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2417.0070151000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................2516.0060122010000
..............................................................................................................................CCCATCAAAC-GGTTGTGAA................................................................................................................................................................................1915.0050310000001
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTT................................................................................................................................2014.0040001030000
droPer2
A--------------------------------ACAAGTGTTCGG---C-TCG-----TACTAT-TT-------------------GGACAAAAAA--AAAACCGTCATCCC-CATACTTACGTAACCCATCAAAC-GGTTGTGAAATGTTGCA-TTT--A-TCAAATCATATCACAGCCATTTTGATGAGTTTCGTGTGGA--ATGG-CCA------GCA---------ATCCATC---AT-CGATCGGGG------CAGGGCAG---G--ATGGAGC--------------------------------ACAGAGTGGACSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23114724.001472417346227965765406100
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................2214959.00495953163632380186332
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................211477.0047714592571623
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241361.003610651531898
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191147.00147001670610
..............................................................................................................................CCCATCAAAC-GGTTGTGAAATG.............................................................................................................................................................................22193.0093134488200
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18158.005800331240
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................22142.00423311340
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................24140.004001512220
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21132.00320290210
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................22121.002100011100
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................23119.00190106120
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................24117.0017002951
..............................................................................................................................CCCATCAAAC-GGTTGTGAAAT..............................................................................................................................................................................21115.00152100111
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22112.0012022350
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22112.0012011640
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23110.0010000370
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20110.0010211510
..............................................................................................................................CCCATCAAAC-GGTTGTGAAA...............................................................................................................................................................................20110.0010111430
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................2019.009012240
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................2117.007001420
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................1916.006110130
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................2516.006010140
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1815.005011300
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................2315.005000140
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................2515.005000320
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2014.004020200
..............................................................................................................................CCCATCAAAC-GGTTGTGA.................................................................................................................................................................................1814.004000040
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................2014.004040000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................2413.003000120
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................1813.003100020
............................................................................................................................................................................TCACAGCCATTTTGATGAG...................................................................................................................................1913.003000210
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA................................................................................................................................2412.002000110
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTT................................................................................................................................2012.002000020
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTA................................................................................................................................2012.002001010
..............................................................................................................................CCCATCAAAC-GGTTGTGAAATGA............................................................................................................................................................................2312.002200000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2312.002010010
..........................................................................................................................................................................TATCACAGCCATTTTGATGATC..................................................................................................................................2212.002000020
.................................................................................................................................................................................................TCGTGTGGA--ATGG-CCA------GC......................................................................................................1812.002000020
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................1912.002002000
droWil2
ATTGCACTCTGC----AAGTG--AGTGGAGCCAACAAGTGTTTTTTTGGAATCCGTTCCGGCAA----------------------------AAGA---------T----GGAATTTCTTACGTAACTCTTCAAGGGGGTTGTGAAATGTTGCC-ATTTTATTCAACTCATATCACAGCCATTTTGATGAGTTTCGTGCGAGTATT------CCTGCAA---CA----------GTA---TT-CGAAATGGATGGTA------------------------TCCTT---------------AGAATAT----GTGAATTGACSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23154258.005425824712822583985612615
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22110521.00105211793935036416258
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAATG.............................................................................................................................................................................2314092.00409224153299772
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2111119.001119234402115728
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................241289.00289010721458
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221157.00157211102816
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................241143.0014303001067
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................191109.001095320153
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191108.0010812016629
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................251105.001050210840
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21183.008301004627
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20163.0063860247
...............................................................................................................................TCTTCAAGGGGGTTGTGAAATG.............................................................................................................................................................................22155.0055012439
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................23147.00470003215
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18144.00444001228
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21141.0041526037
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................22138.0038500429
.....................................................................................................................................................TTGCC-ATTTTATTCAACTCA........................................................................................................................................................20129.0029820163
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20126.0026030716
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22125.0025180025
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAAT..............................................................................................................................................................................22121.0021000210
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23121.0021020811
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22120.0020010316
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................19120.0020010019
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................26217.0034050290
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................20116.0016000115
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................18114.001404037
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................21113.0013120001
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAA...............................................................................................................................................................................21112.0012000120
...............................................................................................................................TCTTCAAGGGGGTTGTGAAA...............................................................................................................................................................................20111.001102153
............................................................................................................................................................................TCACAGCCATTTTGATGAGTTT................................................................................................................................22110.001000082
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24110.001013042
...............................................................................................................................TCTTCAAGGGGGTTGTGA.................................................................................................................................................................................1819.00900045
...............................................................................................................................TCTTCAAGGGGGTTGTGAAAT..............................................................................................................................................................................2118.00800053
.....................................................................................................................................................TTGCC-ATTTTATTCAACTC.........................................................................................................................................................1918.00860011
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................2427.5015000105
..............................................................................................................................CTCTTCAAGGGGGTTGTG..................................................................................................................................................................................1817.00710024
..............................................................................................................................CTCTTCAAGGGGGTTGTGAA................................................................................................................................................................................2016.00600060
..............................................................................................................................CTCTTCAAGGGGGTTGTGA.................................................................................................................................................................................1916.00600042
..........................................................................................................................................................................TATCACAGCCATTTTGATAGT...................................................................................................................................2185.88470011630
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAATT.............................................................................................................................................................................2315.00500050
..........................................................................................................................................................................TATCACAGCCATTTTGATGT....................................................................................................................................2015.00500005
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA................................................................................................................................2415.00500050
..........................................................................................................................................................................TATCACAGCCATTTTGATGG....................................................................................................................................2014.00440000
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAATA.............................................................................................................................................................................2314.00400022
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTA................................................................................................................................2313.00303000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT...............................................................................................................................2513.00300030
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2313.00303000
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAATC.............................................................................................................................................................................2313.00300012
..........................................................................................................................................................................TATCACAGCCATTTTGATGTT...................................................................................................................................2113.00301002
............................................................................................................................................................................TCACAGCCATTTTGATGAGTTA................................................................................................................................2213.00300012
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2112.00200002
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................2012.00201001
..............................................................................................................................CTCTTCAAGGGGGTTGTGAATG..............................................................................................................................................................................2212.00200011
..........................................................................................................................................................................TATCACAGCCATTTTGATGAT...................................................................................................................................2112.00200011
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAAA...............................................................................................................................2512.00200020
............................................................................................................................................................................TCACAGCCATTTTGATGAG...................................................................................................................................1912.00200002
...........................................................................................................................................................................ATCACAGCCATTTTGATGA....................................................................................................................................1912.00202000
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................1812.00200002
..............................................................................................................................CTCTTCAAGGGGGTTGTGAAATGT............................................................................................................................................................................2412.00200020
droVir3
AGATA--ACG--TCGCTTCGA--TAC------------------------------------------------------------------GTAA--AGACCAACCCACTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTTGCC-GTT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT--T----A---AAT--------TC-ATT---GC-CCT-------CGT--C--GGCAGAAT-GG----------------GC-------------------TGGCAAGGACGATSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................23130205.0030205224105143455520117283340003195610164461111108155841194012766533355737150522835311670727012612918275910106612111539294251454241758171185056443500101800310023121000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22119272.0019272039944814163913194181012419161040680151713636881121390155914321653539831109385121487211232316913000000011122222200211128265376012556206004260000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................2416046.00604600201362220790000000201310734121892151211928573371293235311102872200000200000022000041573300000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................2413040.00304001511692392003001025713559160142986812819482153216367994221832108161080000000011231210001161371602201100000020000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................2111964.00196426115718160261121000113624886664388983032312171709632908002001500000000120412200139195800211200000100000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................241840.0084000110361001000015731033458109567818113258180920414745390000000000000000000412503200000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................231347.00347005243000000000001011050110010162841902000004000000000000000000039300000000000000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191248.00248101217100200001411255619791000381121105030001400000000000000000002275000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................251216.002160010001000003000001150234344352412375432391068000000000000000000000204110000000000000
..............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG.............................................................................................................................................................................221204.002040023405010000024053213111000003060004210000000000000100000001046200000200000004310
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................221149.001490511030000000000031210103000002103000000000000000000000000000023000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCA...............................................................................................................................251139.00139000033100000000000001100102322519435090100511000000000000000000000201100000000000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................181124.001240000101101000034377421013000007224060030030000000000000000000139000000000000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................221115.00115008421000000000011100001300001110000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20196.00960427600000000005512330620000024010020000000000000000000000000111100000010000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21196.009600787000000000011200002000000000500000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19183.00830351510000000000321202023000000201100000000000000000000000011011000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23179.00790002000000000013014360100020141361502010012000000000000000000002000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24175.00750010000000000025153021200000101421202001103000000000000000000008000000000000000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTC................................................................................................................................20173.007300101800000000000000800100009368090000316000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCT...............................................................................................................................25161.0061000000000000000000002000010099524000000010000000000000000000000100000000000000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTT................................................................................................................................20142.00420000020000000023100327100000132104000008000000000000000000002000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTAA................................................................................................................................24141.004100001000000000000010000100003451011134023000000000000000000001000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................25137.00370000000000000044022204200000381500000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22134.00340070000000000022011211200000024600000000000000000000000000003000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAAA..............................................................................................................................26225.005000000000000030000000100211512126401311310000000000000000000000000100100000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTA...............................................................................................................................25123.00230000020000000010000010000000330301001003000000000000000000000000500000000000000
...............................................................................................................................TCTTCAAGG-GGTTGTGAAATG.............................................................................................................................................................................21121.00210012000000000000010101000001111100000000000000000000000000042300000000000000001
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................20118.00180032000000000101021000300000320000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................20117.001700170000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................21115.00150034000000000000000001000000210100000000000000000000000000011100000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTC...............................................................................................................................25114.00140000000000000000000040000000121300000003000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGAT......................................................................................................................................18114.00140200000000000011111011000000200200000000000000000000000000001000000000000000000
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................20111.00110016100000000000010000000000000000000000000000000000000000011000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................23110.00100003000000000000000000010000000000000000000000000000000000013002000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22110.00100300000000000010000000000000000000000000000000000000000000006000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTCC................................................................................................................................24110.00100000011000000000000010000100001101000003000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAT...............................................................................................................................25110.00100000000000000000000000000000420301000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTCA................................................................................................................................24110.00100000000000000000000000000000151201000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTCC..............................................................................................................................2619.0090000011000000000000000000000030002000002000000000000000000000000000000000000000
..............................................................................................................................................................................ACAGCCATTTTGATGAGTTA................................................................................................................................2018.0080000110000000000000000000000101000000004000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................2118.0080401000000000000000000000000000000000000000000000000000000003000000000000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2318.0080043000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................1817.0070002000000000001100000010000010100000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATC.....................................................................................................................................1917.0070000000000000000000000000000320200000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGA.......................................................................................................................................1736.67200000000000000000000000000000000000000000000000000200000000000009600200000000001
..........................................................................................................................................................................TATCACAGCCATTTTGATGAA...................................................................................................................................2115.0050000000000000000101001000000100000000000000000000000000000001000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTCC.............................................................................................................................2715.0050000000000000000000000000100010201000000000000000000000000000000000000000000000
............................................................................................................................................................................TCACAGCCATTTTGATGAGTTT................................................................................................................................2215.0050001000000000012000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................1915.0050030000000000000101000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAT...................................................................................................................................2114.0040000000000000000010000010000000000000000000000000000000000002000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTTT..............................................................................................................................2614.0040000000001000000000000000000102000000000000000000000000000000000000000000000000
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2414.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................ATCACAGCCATTTTGATGA....................................................................................................................................1914.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCTC..............................................................................................................................2614.0040000100000000000000010000000011000000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTAA..............................................................................................................................2623.5070000000000000000000000000021111100000000000000000000000000000000000000000000000
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTCAA..............................................................................................................................2623.5070000000000000000000000000010200201010000000000000000000000000000000000000000000
..........................................................................................................CCACTC-AATTCTTGCGTAA....................................................................................................................................................................................................1913.0030000000000000010000000000000100000000000000000000000000000001000000000000000000
droMoj3
TACAA--------------CA--AACACAACCAACAAGTGTTTGC---A-TCT-----CATTAT-ATG------------------GGACACTTAACGATCTCCGCCCATTC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTAGCC-ATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGTGAA--TTGCT--TTCAGCAT-----------------T---GTCCCATCCGTTTTGTG------------------------TCACTGGATTATCCACCTCAATCTCCATCTTCATTTGCATTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................231190549.0019054929361155441457518163827569
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................22117075.001707513529341070172111853145
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTC.................................................................................................................................2319237.0092377166192070
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................2413042.0030425982122264249025
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................2212246.00224628951319480
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................2211724.0017241421117060
..............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG.............................................................................................................................................................................221999.0099954366125373
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................211795.00795160289012038116
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................241423.004231314543816
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................211362.0036259123450
..............................................................................................................................................................................ACAGCCATTTTGATGAGTT.................................................................................................................................191351.0035129247951150
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................211243.002431341111060
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................241223.0022361012131811
.............................................................................................................................................................................CACAGCCATTTTGATGAGTT.................................................................................................................................201217.0021752122070
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTG.................................................................................................................................231111.0011110021080
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTC.................................................................................................................................221107.0010700001070
...............................................................................................................................................................................CAGCCATTTTGATGAGTT.................................................................................................................................181101.001012111960
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGCC.................................................................................................................................23190.00900001890
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................20175.0075244710300
..............................................................................................................................................................................ACAGCCATTTTGATGAGT..................................................................................................................................18165.0065220172420
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................24149.00493232390
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................23146.00462000431
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................23137.00372043280
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGA..................................................................................................................................22135.00355115230
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGAC.................................................................................................................................23128.00280000280
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................24126.00261000250
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................19124.00241405500
.............................................................................................................................................................................CACAGCCATTTTGATGAGTC.................................................................................................................................20124.00240000240
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................20124.00244003170
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGC..................................................................................................................................21122.00220000220
............................................................................................................................................................................TCACAGCCATTTTGATGAGTC.................................................................................................................................21122.00220000220
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTTT...............................................................................................................................25120.00201132130
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGG..................................................................................................................................22118.0018052380
...........................................................................................................................................................................ATCACAGCCATTTTGATGAG...................................................................................................................................20117.00171400030
..............................................................................................................................CTCTTCAAGG-GGTTGTGAAAT..............................................................................................................................................................................21115.00150100140
..............................................................................................................................CTCTTCAAGG-GGTTGTGAAA...............................................................................................................................................................................20115.00150001140
..........................................................................................................................................................................TATCACAGCCATTTTGATGAC...................................................................................................................................21113.00130000130
.............................................................................................................................................................................CACAGCCATTTTGATGAGT..................................................................................................................................19112.0012220080
..............................................................................................................................................................................ACAGCCATTTTGATGAGTC.................................................................................................................................19111.00110000110
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTAA...............................................................................................................................2519.009301131
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTA................................................................................................................................2319.009200070
............................................................................................................................................................................TCACAGCCATTTTGATGAGTTT................................................................................................................................2217.007000070
..........................................................................................................................................................................TATCACAGCCATTTTGATGATC..................................................................................................................................2217.007000070
droGri2
TACAA--------------------CAAAGCCAACAAGTGTTTGT---A-TCT-----CATTAT-TTTATTCTTGCATACATCTGCAGACTGTGAGCGAACCAAGCCCACCC-AATTCTTGCGTAACTCTTCAAGG-GGTTGTGAAATGTGGG-TATT--A-TCAAGTCATATCACAGCCATTTTGATGAGTTTCGTGCGAA--TTGCT--TTCA-------TCACAGTGATC-ATT---GTCCCT-------CGC--CGGGGCCG---G--TTCGTGCAGTCGCCGCCTCCTCCTGTTCCTCCTCCTTCTCCTTTGTGTGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTT.................................................................................................................................231455.00455293162
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGT..................................................................................................................................221180.0018014436
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTT.................................................................................................................................22128.0028280
..........................................................................................................................................................................TATCACAGCCATTTTGATGAG...................................................................................................................................21121.0021201
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTT................................................................................................................................24119.0019118
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGT..................................................................................................................................21117.0017170
..............................................................................................................................CTCTTCAAGG-GGTTGTGAAATG.............................................................................................................................................................................2214.00422
..........................................................................................................................................................................TATCACAGCCATTTTGATGA....................................................................................................................................2013.00321
............................................................................................................................................................................TCACAGCCATTTTGATGAGTT.................................................................................................................................2112.00220
..........................................................................................................................................................................TATCACAGCCATTTTGATG.....................................................................................................................................1912.00220
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTA................................................................................................................................2412.00220
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTC................................................................................................................................2412.00220
...........................................................................................................................................................................ATCACAGCCATTTTGATGAGTTT................................................................................................................................2311.00110
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTTG................................................................................................................................2411.00110
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAGTT.................................................................................................................................2411.00110
............................................................................................................................................................................TCACAGCCATTTTGATGAGT..................................................................................................................................2011.00110
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGC..................................................................................................................................2211.00101
.........................................................................................................................................................................ATATCACAGCCATTTTGATGAG...................................................................................................................................2211.00110
..........................................................................................................................................................................TATCACAGCCATTTTGATGAGTA.................................................................................................................................2320.50101
..........................................................................................................................................................................TATCACAGCCATTTTGAGT.....................................................................................................................................1960.17101

Generated: 10/20/2015 at 07:42 PM