ID:

dwi_998

 Coordinate:

scf2_1100000004514:2733970-2734120 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.7 -16.6 -16.0 -15.9

Flybase annnotation

CDS [Dwil\GK15916-cds]; exon [dwil_GLEANR_16146:1]; intron [Dwil\GK15916-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2N1_DVirRCHelitron-

Sense Strand Reads

---------#########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATTTACACCATGAACGATCTATTTCATTTAAGTTTGGTATCATTTCGAAAGTAATGTTCTTTCAAAAAGCTATTGCAATCAGCAAGCTATACCTTAGTATGCAACAAATTCATACTGGGGATACTCCAATTTTTATGAAAATGTTTCTTCTAGAGCTATATGATATAGTGGTCCGATCCTGACAATTTTACTTTACCTGCTTCGGGCTAATGATGGTAATAATGGTACAAACGGGAAGAAAAGTTTGGGAG
*********************************************************...............................((.((((((((((.........))))))))))))********************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 V119
head
 M020
head
...............................................................................................................................................................................................................TAATGATGGTAATAATGGTACAAACG.................. 26 0 1 2.00 2 2 0 0 0 0
.........................................................TCTTTCAAAAAGCTATTGC............................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................ACTTTACCTGCTTCGGGCTAA......................................... 21 0 1 1.00 1 0 1 0 0 0
......................................................................................................AACAAATTCATACTGGGGAT................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................TAATGGTACAAACGGGAAGAAAAGTT...... 26 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................TAATAATGGTAATAATGGTACA...................... 22 1 4 0.25 1 1 0 0 0 0
........................................................................................................................................................................................................TTCTGGATAAGGATGGTAAT............................... 20 3 18 0.06 1 0 0 1 0 0
..................................................................................................................................................................................................................TGATGGTAATAATAATACA...................... 19 2 18 0.06 1 0 0 1 0 0
..............................................................................................................................................................TATGATATAGTGGTCCGATCCTGAC.................................................................... 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................TTCTAGAGCTATATGATATAGTGG................................................................................ 24 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................TGATATAGTGGTCCGATCCTGACAATTT............................................................... 28 0 20 0.05 1 0 0 1 0 0
...................................................................................................................................................................TATAGTGGTCCGATCCTGACA................................................................... 21 0 20 0.05 1 0 0 0 1 0
....................................................................................................................................................TCTAGAGCTATATGATATAGT.................................................................................. 21 0 20 0.05 1 0 0 0 1 0
................................................................................................................................ATTTTTATGAAAATGTTTCTTCTAGAG................................................................................................ 27 0 20 0.05 1 0 0 0 0 1
.......................................................................................TATAGCTGAGTATGCAAGA................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................TAGTGGTCCGATCCTGACAATT................................................................ 22 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................TAGAGCTATATGATATAGTGGTCCG............................................................................ 25 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................TATGAAAATGTTTCTTCTAGAG................................................................................................ 22 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................TATGAAAATGTTTCTTCTAGAGCT.............................................................................................. 24 0 20 0.05 1 1 0 0 0 0
.........................ATTTAAGTTTGCTATCGT................................................................................................................................................................................................................ 18 2 20 0.05 1 0 0 1 0 0
..............................................................................................................................................GTTTCTTCTAGAGCTATATGATATA.................................................................................... 25 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TAAATGTGGTACTTGCTAGATAAAGTAAATTCAAACCATAGTAAAGCTTTCATTACAAGAAAGTTTTTCGATAACGTTAGTCGTTCGATATGGAATCATACGTTGTTTAAGTATGACCCCTATGAGGTTAAAAATACTTTTACAAAGAAGATCTCGATATACTATATCACCAGGCTAGGACTGTTAAAATGAAATGGACGAAGCCCGATTACTACCATTATTACCATGTTTGCCCTTCTTTTCAAACCCTC
*********************************************************************************************************************************...............................((.((((((((((.........))))))))))))********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
...................................................................................................................................................................................................GGACGAAGCCCGATTACTACCATTAT.............................. 26 0 1 3.00 3 2 1 0 0
............................................................................................................................................................................................................CCGATTACTACCATTATTACCATGTT..................... 26 0 1 2.00 2 1 1 0 0
............................................................................................................................................................................GGCTAGGACTGTTAAAATGAAAT........................................................ 23 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................GGACTGTTAAAATGAAATGGATGAAG................................................ 26 1 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................TACTACCATTATTACCATGTTTGCCCTT.............. 28 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................TTACTACCATTATTACCATGT...................... 21 0 1 1.00 1 0 1 0 0
...ATGTGGTACTTGCTAGATAA.................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
...................................................................................................................................................................................................GGACGAAGCCCGACTACTACCATTAT.............................. 26 1 1 1.00 1 0 1 0 0
...............................................................................................................................................................................................AAATGGACGAAGCCCGATTACTACCAT................................. 27 0 1 1.00 1 1 0 0 0
.....................................................TACAAGAAAGTTTTTCGATAACGTTAG........................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
................................................................................................CATACGTTGTTTAAGTATGACCCCT.................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.......................................................................TAACGTTAGTCGTTCGATATGGAATCAT........................................................................................................................................................ 28 0 1 1.00 1 0 1 0 0
.................................................................................CGTTCGATATGGAATCATACGTTG.................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................TGAAATGGACGAAGCCCGGTTACT...................................... 24 1 1 1.00 1 1 0 0 0
..........................................................................................................................................................................CAGGCTAGGACTGTTAAAATGAAAT........................................................ 25 0 1 1.00 1 1 0 0 0
.......................................................................TAACGTTAGTCGTTCGATATGGAAT........................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
.........................................................................................ATGGAATCATACGTTGTTTAAGTAT......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
......................................................................ATAACGTTAGTCGTTCGATAT................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................CCAGGCTAGGACTGTTAAAATGAAAT........................................................ 26 0 1 1.00 1 1 0 0 0
................................................................................................................................................................................................................TTACTACCATTATTACCATGTTTGCCC................ 27 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................TATCACCAGGCTAGGACTGTTAAAAT............................................................. 26 0 3 0.33 1 1 0 0 0
......TGGGTCTTGCTAGATAAA................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0
........................................................................................................................................................................................TAAAATGACATGGACAAAG................................................ 19 2 7 0.14 1 1 0 0 0
..............................................................................................................................................................ATACTATATCACCAGGCTAGGAC...................................................................... 23 0 20 0.05 1 0 1 0 0
..............................................................................................................................................CAAAGAAGATCTCGATATACTAT...................................................................................... 23 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................GATATACTATATCACCAGGCTAGGAC...................................................................... 26 0 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004514:2733920-2734170 + dwi_998 ATTTACACCATGAACGATCTATTTCATTTAAGTTTGGTATCATTTCGAAAGTAATGTTCTTTCAAAAAGCTATTGCAATCAGCAAGCTATACCTTAGTATGCAACAAATTCATACTGGGGATACTCCAATTTTTATGAAAATGTTTCTTCTAGAGCTATATGATATAGTGGTCCGATCCTGACAATTTTACTTTACCTGCTTCGGGCTAATGATGGTAATAATGGTACAAACGGGAAGAAAAGTTTGGGAG
droAna3 scaffold_13266:17032908-17032967 - A---------------------------------------------------------------------------------------------------------------------------------------------------------GCTATAGGATATAGTCGACCGATCCCGGCCGTTCCGACTTATATACTGCCTGCAAAGGA--------------------------------------
droBip1 scf7180000394982:9155-9214 + A---------------------------------------------------------------------------------------------------------------------------------------------------------GCTATAGGATATAGTCGGCCGATCCGGGCCGTTCCGACTTATATACTGCGTGCAAAGGA--------------------------------------
droRho1 scf7180000767788:65485-65547 - ---------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTATGGGATCTATACGATATAGTGAACCAATTC---------GGACTTATATACCACCTGCAGCAGG--------------------------------------
droTak1 scf7180000415762:617026-617099 + AC-------------------------------------------------------------------------------------------------------AAAGT--TACAATGAATTTTCTTATATTTGTTTGAATATTCCTATGGAAGCCTTAAGATATAGTGGTCCGATCC------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATTTACACCATGAACGATCTATTTCATTTAAGTTTGGTATCATTTCGAAAGTAATGTTCTTTCAAAAAGCTATTGCAATCAGCAAGCTATACCTTAGTATGCAACAAATTCATACTGGGGATACTCCAATTTTTATGAAAATGTTTCTTCTAGAGCTATATGATATAGTGGTCCGATCCTGACAATTTTACTTTACCTGCTTCGGGCTAATGATGGTAATAATGGTACAAACGGGAAGAAAAGTTTGGGAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................TAATGATGGTAATAATGGTACAAACG..................2612.00200020
.........................................................TCTTTCAAAAAGCTATTGC...............................................................................................................................................................................1911.00100010
.............................................................................................................................................................................................ACTTTACCTGCTTCGGGCTAA.........................................2111.00100100
......................................................................................................AACAAATTCATACTGGGGAT.................................................................................................................................2011.00100010
...........................................................................................................................................................................................................................TAATGGTACAAACGGGAAGAAAAGTT......2611.00100010
..............................................................................................................................................................TATGATATAGTGGTCCGATCCTGAC....................................................................25200.05100010
...................................................................................................................................................TTCTAGAGCTATATGATATAGTGG................................................................................24200.05101000
................................................................................................................................................................TGATATAGTGGTCCGATCCTGACAATTT...............................................................28200.05101000
...................................................................................................................................................................TATAGTGGTCCGATCCTGACA...................................................................21200.05100001
....................................................................................................................................................TCTAGAGCTATATGATATAGT..................................................................................21200.05100001
................................................................................................................................ATTTTTATGAAAATGTTTCTTCTAGAG................................................................................................27200.05110000
.....................................................................................................................................................................TAGTGGTCCGATCCTGACAATT................................................................22200.05100010
......................................................................................................................................................TAGAGCTATATGATATAGTGGTCCG............................................................................25200.05100010
.....................................................................................................................................TATGAAAATGTTTCTTCTAGAG................................................................................................22200.05101000
.....................................................................................................................................TATGAAAATGTTTCTTCTAGAGCT..............................................................................................24200.05100010
..............................................................................................................................................GTTTCTTCTAGAGCTATATGATATA....................................................................................25200.05101000
droAna3
A---------------------------------------------------------------------------------------------------------------------------------------------------------GCTATAGGATATAGTCGACCGATCCCGGCCGTTCCGACTTATATACTGCCTGCAAAGGA--------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................TCCCGGCCGTTCCGACTTATATACTGC................................................27200.408080000
...............................................................................................................................................................AGGATATAGTCGACCGATCCCGGC....................................................................24200.255050000
.....................................................................................................................................................................................GCCGTTCCGACTTATATACTGCCT..............................................24200.102000002
.............................................................................................................................................................ATAGGATATAGTCGACCGATC.........................................................................21200.051000100
droBip1
A---------------------------------------------------------------------------------------------------------------------------------------------------------GCTATAGGATATAGTCGGCCGATCCGGGCCGTTCCGACTTATATACTGCGTGCAAAGGA--------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
---------------------------------------------------------------------------------------------------------------------------------------------TGTTCCTATGGGATCTATACGATATAGTGAACCAATTC---------GGACTTATATACCACCTGCAGCAGG--------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AC-------------------------------------------------------------------------------------------------------AAAGT--TACAATGAATTTTCTTATATTTGTTTGAATATTCCTATGGAAGCCTTAAGATATAGTGGTCCGATCC------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 12:22 AM