ID:

dwi_94

 Coordinate:

scf2_1100000004943:5102-5174 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-12.2 -12.0 -11.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AAGACTCAAAATGGTGGCTGTAGAATGGTTTCAGCAGCGCGTGTGGCTTTTATATTCAAGATGGCGGCTAACAGACTCAAAATGGTGACTTAAATACTCAAAATGGTAGCAGTAGAATGTTTTCAACAACGCCTGTGGCTTTTATATTAAAGATGGCGGCTAAAAAACTGAAA
***********************************((.((((((.(((.((........)).))).))........(((......)))...............(((.((((......)))).)))...))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 V119
head
......................................................................................................ATGGTAGCAGTAGAATGTTT................................................... 20 0 1 13.00 13 10 3 0 0
......................................................................................................ATGGTAGCAGTAGAATGT..................................................... 18 0 1 4.00 4 3 0 0 1
......................................................................................................ATGGTAGCAGTAGAATGTT.................................................... 19 0 1 3.00 3 2 1 0 0
.......................................................................................................TGGTAGCAGTAGAATGTT.................................................... 18 0 1 1.00 1 0 0 1 0
......................................................................................................ATGGTAGCAGTAGTATGTTT................................................... 20 1 1 1.00 1 1 0 0 0
.................................................................................................TCAAAGTGGTAGCAGTAAAATGTT.................................................... 24 2 1 1.00 1 0 0 1 0
......................................................................................................ATGGAAGCAGTAGAATGTTT................................................... 20 1 2 0.50 1 1 0 0 0
.....................................................................................................CATGGTAGCAGTAGTATGTTT................................................... 21 2 20 0.05 1 1 0 0 0
.....................................................................................................CATGGTAGCAGTAGAATGT..................................................... 19 1 20 0.05 1 0 0 0 1
......................................................................................................ATGGTAGCGGTAAAATGTTTT.................................................. 21 2 20 0.05 1 1 0 0 0
...........................................TGGCTTTTATATTCAAGATGGCGGC......................................................................................................... 25 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

TTCTGAGTTTTACCACCGACATCTTACCAAAGTCGTCGCGCACACCGAAAATATAAGTTCTACCGCCGATTGTCTGAGTTTTACCACTGAATTTATGAGTTTTACCATCGTCATCTTACAAAAGTTGTTGCGGACACCGAAAATATAATTTCTACCGCCGATTTTTTGACTTT
***********************************((.((((((.(((.((........)).))).))........(((......)))...............(((.((((......)))).)))...))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
............................................................................................TTATGAGTTTTACCATCGTCATCTT........................................................ 25 0 1 1.00 1 0 1
.............................................................................................................................TGTTGCGGACACCGAAAATATAATTTC..................... 27 0 1 1.00 1 0 1
....................................................................................................TTTACCATCGTCATCTTACAAAAGTTGT............................................. 28 0 1 1.00 1 1 0
...................................................................................................................................................ATTTCTACCGCCGATTTTTTGACTTT 26 0 2 0.50 1 1 0
......................................................AAGTTCTACCGCCGATTGTCTGAGTTT............................................................................................ 27 0 9 0.11 1 1 0
....................................................ATAAGTTCTACCGCCGATTGTCTGAGT.............................................................................................. 27 0 9 0.11 1 1 0
.........................................................................CTGAGTTTTACCACTGAATTTATGAGT......................................................................... 27 0 20 0.10 2 2 0
....................................CGCGCACACCGAAAATATAAGTTCT................................................................................................................ 25 0 11 0.09 1 0 1
................................................AAATATAAGTTCTACCGCCGATTGT.................................................................................................... 25 0 11 0.09 1 1 0
.........................................ACACCGAAAATATAAGTTCTACCGCCGAT....................................................................................................... 29 0 12 0.08 1 1 0
...........................................ACCGAAAATATAAGTTCTACCGCCGAT....................................................................................................... 27 0 12 0.08 1 1 0
..................................................................CGATTGTCTGAGTTTTACCACTGAATT................................................................................ 27 0 20 0.05 1 1 0
.........................................................TTCTACCGCCGATTGTCTGAGTTT............................................................................................ 24 0 20 0.05 1 1 0
.....AGTTTTACCACCGACATCTTACCAAAGT............................................................................................................................................ 28 0 20 0.05 1 1 0
...........................................................................GAGTTTTACCACTGAATTTAT............................................................................. 21 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004943:5052-5224 - dwi_94 AAGACTCAAAATGGTGGCTGTAGAATGGTTTCAGCAGCGCGTGTGGCTTTTATATTCAAGATGGCGGCTAACAGACTCAAAATGGTGACTTAAATACTCAAAATGGTAGCAGTAGAATGTTTTCAACAACGCCTGTGGCTTTTATATTAAAGATGGCGGCTAAAAAACTGAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAGACTCAAAATGGTGGCTGTAGAATGGTTTCAGCAGCGCGTGTGGCTTTTATATTCAAGATGGCGGCTAACAGACTCAAAATGGTGACTTAAATACTCAAAATGGTAGCAGTAGAATGTTTTCAACAACGCCTGTGGCTTTTATATTAAAGATGGCGGCTAAAAAACTGAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................ATGGTAGCAGTAGAATGTTT...................................................20113.0013003100
......................................................................................................ATGGTAGCAGTAGAATGT.....................................................1814.00400031
......................................................................................................ATGGTAGCAGTAGAATGTT....................................................1913.00300120
.......................................................................................................TGGTAGCAGTAGAATGTT....................................................1811.00101000
...........................................TGGCTTTTATATTCAAGATGGCGGC.........................................................................................................25200.05101000

Generated: 05/15/2015 at 02:35 PM