ID:

dwi_812

 Coordinate:

scf2_1100000004513:401704-401854 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.2 -5.2 -5.1

Flybase annnotation

CDS [Dwil\GK21680-cds]; exon [dwil_GLEANR_4780:3]; intron [Dwil\GK21680-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACTCAGCTTCCCGAATTTTGAATTTTTATTTCCAGGGTCTCGAATCGATACCAGATGAGAAAAAGAATTAATTTTAAAAAAATTACTGCAAATGTGTTGATTGATTTAAATTTTAAGTGCAAAAAGTGAATAAATCAGAAACTAAAGTGAGATTTTAAGAGTTTACTTCATGGAGAAGCGCCCTTTTTTTGTTTTTTACAGGGTCTAGAGTCAATATCCGATGAAAATCGCGATGAGGAGAACGATCAAAC
*********************************************************************************..............(((..((((((((.(((((........)))))...)))))))).)))......******************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 V119
head
.............................................CGATACCAGATGAGAAAAAGA......................................................................................................................................................................................... 21 0 1 5.00 5 2 3 0 0
.................................................................................................................................ATAAATCAGAAACTAAAGT....................................................................................................... 19 0 1 5.00 5 4 1 0 0
.............................................................................................................................GTGAATAAATCAGAAACTAAAGT....................................................................................................... 23 0 1 4.00 4 2 2 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAAT.................................................................................................................... 21 0 1 3.00 3 2 1 0 0
.................................................................................ATTACTGCAAATGTGTTGATTGAT.................................................................................................................................................. 24 0 1 3.00 3 3 0 0 0
............................................................................................................................AGTGAATAAATCAGAAACTAAAGTGA..................................................................................................... 26 0 1 3.00 3 2 0 1 0
...........................................................................................ATGTGTTGATTGATTTAAAT............................................................................................................................................ 20 0 1 2.00 2 2 0 0 0
....................................................................................ACTGCAAATGTGTTGATTGA................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0
.........................................................................................................TTAAATTTTAAGTGCAAAAA.............................................................................................................................. 20 0 1 2.00 2 2 0 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAATCAG................................................................................................................. 24 0 1 2.00 2 2 0 0 0
...........................................................................................ATGTGTTGATTGATTTAAA............................................................................................................................................. 19 0 1 2.00 2 2 0 0 0
................................................................................................................TTAAGTGCAAAAAGTGAATAAAT.................................................................................................................... 23 0 1 2.00 2 1 1 0 0
.................................................................................................................TAAGTGCAAAAAGTGAATAAAT.................................................................................................................... 22 0 1 2.00 2 2 0 0 0
...........................................................................................................................AAGTGAATAAATCAGAAACTAAAGT....................................................................................................... 25 0 1 2.00 2 1 1 0 0
...............................................................................................................TTTAAGTGCAAAAAGTGAAT........................................................................................................................ 20 0 1 2.00 2 2 0 0 0
................................................................................AATTACTGCAAATGTGTTGATT..................................................................................................................................................... 22 0 1 2.00 2 2 0 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAATCAGAA............................................................................................................... 26 0 1 1.00 1 1 0 0 0
.........................................................................................................................AAAAGTGAATAAATCAGAAACTAAAGT....................................................................................................... 27 0 1 1.00 1 1 0 0 0
.................................................................................ATTACTGCAAATGTGTTGAT...................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.................................................................................................................................ATAAATCAGAAACTAAAGTG...................................................................................................... 20 0 1 1.00 1 0 0 1 0
........................................................................................CAAATGTGTTGATTGATTTAAA............................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
.................................................................................ATTACTGCAAATGTGTTGATT..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.................................................ACCAGATGAGAAAAAGAATT...................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0
........................................CGAATCGATACCAGATGAG................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
..................................................................................TTACTGCAAATGTGTTGATTGA................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.....................................TCTCGAATCGATACCAGATGAG................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
.................................................................................ATTACTGCAAATGTGTTGATTGA................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
..........................................................................................AATGTGTTGATTGATTTAA.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
...................................................................................................................AGTGCAAAAAGTGAATAAATCAGA................................................................................................................ 24 0 1 1.00 1 1 0 0 0
........................................................................................GCAATGTGTTGATTGATTTAAA............................................................................................................................................. 22 2 1 1.00 1 1 0 0 0
.............................................................................................GTGTTGATTGATTTAAAT............................................................................................................................................ 18 0 1 1.00 1 1 0 0 0
.................................................................................................................TAAGTGCAAAAAGTGAATAAATCAGA................................................................................................................ 26 0 1 1.00 1 0 1 0 0
..................................................................................................................AAGTGCAAAAAGTGAATA....................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.....................................................................................CTGCAAATGTGTTGATTGAT.................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
...............................................................................................................TTTAAGTGCAAAAAGTGAATAAATCAG................................................................................................................. 27 0 1 1.00 1 0 1 0 0
.................................................................................ATTACTGCAGATGTGTTGATTGAT.................................................................................................................................................. 24 1 1 1.00 1 1 0 0 0
..................................................................................................GATTGATTTAAATTTTAAGT..................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.........................................................................................................TTAAATTTTAAGTGCAAAAAGTGA.......................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................................CTCGAACCGATACCAGATGAGAAAAAGA......................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0
..............................................GATACCAGATGAGAAAAAGAA........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
..................................................................................TTACTGCAAATGTGTTGATT..................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................GATGAAAATCGCGATGAGGA............ 20 0 1 1.00 1 0 1 0 0
.........................................GAATCGATACCAGATGAGAAAAAGA......................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
............................................................................................................................AGTGAATAAATCAGAAACTAAAGT....................................................................................................... 24 0 1 1.00 1 0 1 0 0
................................................................................................TTGATTGATTTAAATTTTAAGT..................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...............................................................................................................TTTAAGTGCAAAAAGTGAATAAATC................................................................................................................... 25 0 1 1.00 1 0 0 0 1
......................................................................................TGCAAATGTGTTGATTGATTTAAAT............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAA..................................................................................................................... 20 0 1 1.00 1 1 0 0 0
................................................................................................................TTAAGTGCAAAAAGTGAAT........................................................................................................................ 19 0 1 1.00 1 0 1 0 0
..............................TGAATGGTCTCGAATCGATACC....................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
................................................TACCAGATGAGAAAAAGA......................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.......................................TCGAATCGATACCAGATGAGA............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.........................................................................................AAATGTGTTGATTGATTTAAATTTT......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................GAATCGATACCAGATGAGA............................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0
..............................................GATACCAGATGAGAAAAAGA......................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.....................................................GATGAGAAAAAGAATTAAT................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
................................................................................................................TTAAGTGCAAAAAGTGAATAAATC................................................................................................................... 24 0 1 1.00 1 1 0 0 0
......................................................................................................GATTTAAATTTTAAGTGCAAAA............................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...............................................................................................................TTTAAGTGCAAAAAGTGAATAAAT.................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..........................................................................TAAAAAAATTACTGCAAATGT............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
.............................................................................................................................GTGAATAAATCAGAAACTAAAGTGA..................................................................................................... 25 0 1 1.00 1 1 0 0 0
........................................................................................................TTTAAATTTTAAGTTCAAAAAGTGAAT........................................................................................................................ 27 1 1 1.00 1 1 0 0 0
............................................................................................................................AGTGAATAAATCAGAAACTAAAGTGAA.................................................................................................... 27 1 1 1.00 1 0 0 1 0
...................................................................................................ATTGATTTAAATTTTAAGTGCAAA................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
...................................................................................TACTGCAAATGTGTTGATT..................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
............................................................................................................AATTTTAAGTGCAAAAAGTGAAT........................................................................................................................ 23 0 1 1.00 1 1 0 0 0
..........................................................................................................TAAATTTTAAGTGCAAAAAGTGAAT........................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...............................................................................................................................GAATAAATCAGAAACTAAAGT....................................................................................................... 21 0 1 1.00 1 1 0 0 0
...........................................................................................................AAATTTTAAGTGCAAAAAGTGAAT........................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..................................................................................TTACTGCAAATGTGTTGATTG.................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0
.....................................................................................................................................ATCAGAAACTAAAGTGAGA................................................................................................... 19 0 1 1.00 1 1 0 0 0
.............................................CGATACCAGATGAGAAAAAGAATTAAT................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.....................................................................................................................TGCAAAAAGTGAATAAATC................................................................................................................... 19 0 1 1.00 1 1 0 0 0
................................................................................AATTACTGCAAATGTGTTGATTGAT.................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
..........................................................................................AATGTGTTGATTGATTTAAA............................................................................................................................................. 20 0 1 1.00 1 0 1 0 0
.........................................................................................AAATGTGTTGATTGATTTAAAT............................................................................................................................................ 22 0 1 1.00 1 1 0 0 0
................................AATGGTCTCGAATCGATAC........................................................................................................................................................................................................ 19 2 1 1.00 1 1 0 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAATCAGA................................................................................................................ 25 0 1 1.00 1 1 0 0 0
.....................................................................................CTGCAAATGTGTTGATTGATTTAAA............................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
................................................................................................................TTAAGTGCAAAAAGTGAATA....................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...................................................................................TACTGCAAATGTGTTGATTGATTT................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..................................................................................................................AAGTGCAAAAAGTGAATAAATCAGAAA.............................................................................................................. 27 0 1 1.00 1 1 0 0 0
...........................................ATCGATACCAGATGAGAAAAAGA......................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
......................................................................................................GATTTAAATTTTAAGTGCAAAAAGTGA.......................................................................................................................... 27 0 1 1.00 1 1 0 0 0
..............................................................AAGAATTAATTTTAAAAAAATTA...................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
...................................................................................TACTGCAAATGTGTTGATTGATT................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
.......................................................................................................................................CAGAAACTAAAGTGAGAA.................................................................................................. 18 1 2 0.50 1 0 0 1 0
...............................GAATGGTCTCGAATCGATACCA...................................................................................................................................................................................................... 22 3 2 0.50 1 1 0 0 0
...............................GAATGGTCTCGAATCGATAC........................................................................................................................................................................................................ 20 3 7 0.29 2 0 2 0 0
................................................................................................................................................................................................................................AAAGCTCGATGAGGATAAC........ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

TGAGTCGAAGGGCTTAAAACTTAAAAATAAAGGTCCCAGAGCTTAGCTATGGTCTACTCTTTTTCTTAATTAAAATTTTTTTAATGACGTTTACACAACTAACTAAATTTAAAATTCACGTTTTTCACTTATTTAGTCTTTGATTTCACTCTAAAATTCTCAAATGAAGTACCTCTTCGCGGGAAAAAAACAAAAAATGTCCCAGATCTCAGTTATAGGCTACTTTTAGCGCTACTCCTCTTGCTAGTTTG
*******************************************************************************************************..............(((..((((((((.(((((........)))))...)))))))).)))......********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
................................................................................................................................................................................................AAAGATGCCCCTGATCTCAGT...................................... 21 3 2 0.50 1 1 0
..................................CCAAGAGCTCAGTTATGGT...................................................................................................................................................................................................... 19 3 11 0.09 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004513:401654-401904 + dwi_812 A-CTCAG-------------CT-TCC------------------CGAA--------TTT-------TGAA--TTTTTATTTCCAGGGTCTCGAATCGATACCAGATGAGAAAAAGAATTAATTTTA-AAAAAATTACTGCAAATGTGTTGATTGAT-TTAAATTTTAAGTGCAAAAAGTGAATAAATCAGAAA---------CTAAA----------------GTGAGATTT--------TAAGAGTTTACT---------------------------TCATGGAGAAGCGCCCTTTTTT---------------------------------------------------------------TGTTTTT--TACAGGGTCTAGAGTCAATATCCGATGAAAATCGCGATGAGGAGAACGATCAAA---C
droVir3 scaffold_12875:808657-808944 + C-TTCAA----------------------------------------ATTTTAAAAAATTGAGAATTCGTCTCATTATTTTACAGGGTCTCCATGCTATACCAGATGAGTCTAAAAAATAAATGTA-ACGTAGT---TG-AAAT-T--------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAATT-------TACAGTACGAAA----------------TTGAAAAGT--------TATATCTTTTAG------------TTA---GGGTTTTTTTTAGCAGGTTGCGCTCGTTTAGTAGTTTCGT--AGAATCTAGT-GTC-TAT-TA-CCG---ATTCTCAAG----GG--C------ATTTATT--TACAGGGCCTGGAAGAGATTGAGGACGAAG------AAGAAG---------AGA---A
droMoj3 scaffold_6496:3830147-3830391 + C-TTCAA---------------------------------------TATTTTGAAAATTCGAGAATATGTTTCATTCTCTTACAGGGTCTTAATGCTGTACCAGATGAGGATAGGAAGTAAATGTAAACCTAGT---TG-AAAT-T--------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAAT-------TACAAATCGAAACTGAATTAAAATTGGAGTTAAAATT--------GAAAATA-TATA------------TTTAAGT-------------------AG-TATTTCTTTAGTTCTCA--TTAGAGTTTA-T---GCT--------------------CGGTG--CTTTCGAATTCATT--TACA------------------------------------------------------
droGri2 scaffold_15245:10145615-10145878 - A-AC----------------------------------------------------------------TTCTCATTCTCTTGCAGGGTCTCCATGCTATTCCAGATGAGTCCAAAAATTAAATGTT-ATGTAGT---TG-AAAT-T--------CT-ATTAAGCTTAAGTGCAA-AAGTGAATAAATA-------TACAGTACGAAA----------------TTGAAAATCGAAAATTTTAAAGGCTCATATTTCAGTTATTGTTA---G-------------------A-----ACTTGT------------AGAATTGTATT--ATT-TA-GCGA--TATTT-AAG----TG--C------ATTCCTT--TACAGGGTCTAGAAGAGATTGAAGATGAGGATG---AAGATGTTGCGAATAAAAAGAC
dp5 3:2535027-2535288 + C-CTCTG-------------TATTGAGACAC-------------------------------------AATTCATTTACTTGCAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAGT----G-AAATTT--------CT-TTAAAACTTAAGTGCAA-AAGTGAATAAACG-------TAAAGTGCGGAA----------------GTGAAAGA------------TTGGTCGTT------------GTA---G-------------------AG-TTTTCCTGTAGTTTTCC--TTCCA------------T-TG-CCCA--GATCTATACCCAGCC--CTC----TTCTCTT--CCTAGGGACTTGACGCCATTCCCGATGATGAAG---AAGACGATCAGAATAAGG---A
droPer2 scaffold_2:2725861-2726117 + A-TTG--------------------AGACAC-------------------------------------AATTCATTTACTTGCAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAGT----G-AAATTT--------CT-TTAAAACTTAAGTGCAA-AAGTGAATAAACG-------TAAAGTGCGGAA----------------GTGAAAGA------------TTGGTCGTT------------GTA---G-------------------AG-TTTTCCTGTAGTTTTCC--TTCCA------------T-TG-CCCA--GATCTATACCCAGCC--CTC----TTCTCTT--CCTAGGGACTTGACGCCATTCCCGATGATGAAG---AAGACGATCAGAATAAGGAG-C
droAna3 scaffold_13266:6511249-6511502 + A-TTT---------------------------------------CGAA-----------------TTTCGAAAATTTAATTGCAGGGTCTGGATGCCATACCGGATGAGAA---GAAATAGGTTGA-ATTAAGT----A-CA-TTTTT------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATG--AAACGTATAGTGCGGAA----------------GTGAAAGTC--------TCTCGAGTGGTT------------TTA---G-------------------A-TTTTTCCTGTAGTCCTCT--TCCGATTTGG-T---------CCTTG--GGTGTATAG----CT--A-------TTTAAT--TCCAGGGTCTTGAAGAAATTCCCGAGGAGG------AGGAAAAGAAAG---AAG---A
droBip1 scf7180000396423:87238-87496 + C-CTTAT----------------TCCGAAAT-------------------------------------AA---TTTTAATTGCAGGGTCTGGATGCCATACCGGATGAGAAAAAGGAATAGGTTGA-ATTAAGT----A-AAACTTTT------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATG--AAACATTTAGTGCGAAA----------------GTGAAAGCT--------CCTTGGCTCGTT------------TTA---G---------------------ATTCTCCTGTAGTCCTTCT-TCGGCGT-A---T--T-T-TG-CTTG--GGTGTATAG----CT--A-------TTTCAT--TGCAGGGTCTTGAAGAAATTCCCGATGAGG------AGGAAAAGAA---ACAAG---A
droKik1 scf7180000302639:242980-243222 - --------------------------------------------------------------------------TTTCCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAAAGAACTAGTTTGA-ATTAAGT----C-AAATTTTT------C--TTTAAACTTAAGGGCAA-AAGTGAATAAACG--AAGCGTTTAGTGCGAAA----------------GTGATAGTT--------CAATTGGTGGCC------------TTTGTAG-------------------AGTTTTTCCTGTAGTTTCCC--TCTTAGTTTC-------T--C-CCTC--GGTGTACAG--AGCC--A-------TTTCTT--TCTAGGGACTCGAGCAAATTCCTGATGAAG------AGGAGG------ACCAGA---A
droFic1 scf7180000454066:213065-213327 - A-TTC---------------------------------------AGAA-----------------CCGTCCCGATTTTTTTTCAGGGTCTGGATGCCATACCGGATGAGAAAA---AATAATTCGA-TTTAAGT----G-AAGTTTTC------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATA--AAACGTATAGTTCGGAA----------------GTGATAGTT--------GAA-TGGTCGTT------------TTT---G-------------------CGTTTTTCCTGTAGTTTTCC--C-TGAGTTTC--T--GTC-CA-CTGA--GATGTAAAC----CCCGA-------AATCTT--TTTAGGGACTTGAACAAATTCCCGATGAAG------AGGAAGATAAGGATCGAA---A
droEle1 scf7180000489694:390977-391245 - AATAC---------------------------------------AGAA-----------------TCGTCCTTATTTTATTGCAGGGTCTGGATGCCATACCGGATGAGAAAACTAAATAATTTGA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTTTAGTTGGGAA----------------GT------C--------GAATAGCTTGTT------------TCT---G-------------------AGTTTTCCTTGTAGTGTTTTT-TCAGAGTTCT--T--GCC--CTCTCATGTGTGTAAAG----CCCTA-------TTTCTT--TTTAGGGACTTGAACAAATTCCCGATGAGGAGG---AGGACAATAAGGATCAAA---G
droRho1 scf7180000779872:289383-289652 - AATTC---------------------------------------AGAA-----------------TCGTCCTTAATTTCTTGCAGGGTCTGGACGCCATACCGGATGAGAAAACTAATTAATTTGA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTATAGTTGGGAA----------------GTGATAGTT--------GAATTGGTCGTC------------TCT---G-------------------AGTTTCTCCTGTAGTTTTTTTTACAGAGTTTT-T---GCCCTG-CTCA--GGTGTAAAG----CT--A------CTTTCTT--TTTAGGGACTTGAGCAAATTCCTGATGAAG------AAGAGGAAAAGGAACAA----A
droBia1 scf7180000302292:48762-49029 + T-C-----------------------------------------AAAA-----------------CCATTCCCGTTCTCTTGCAGGGTCTGGATGCTATACCGGATGAGAAAACTAATTAAATGTA-TTTAAGT----G-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTATAGTTGGAAA----------------GTGATAGTT--------GAATTGGTCGCA------------TTT---T-------------------AGTTTTCCCTGTAGTTTTCC--ACAGATGTGT-TTTTCCC-TG-CTTT--GGTGTAAAG----AC--C------CTTTCTT--TCCAGGGACTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGACGAGA---A
droTak1 scf7180000415386:157887-158139 + A-TTC---------------------------------------AGAA-----------------TTCTCTCAATTTTCTTGCAGGGTCTGGATGCTATACCGGATGAGAAAACTAAATAAAT-----TTAAGT----A-AAGTTTTC------CCTTTTAAGCTTAAGTGCAA-AAGTGAATAAA-------------ATTCGGAA----------------GTGATAGTT--------GAATGGGTCGTG------------CTT---G-------------------AGTTTTTCCTGTAGTTTTCC--ACAGATTTGT-TT--CCC-TG-CCCA--GGTGTAAAG----AC--C------CT-TTTT--TTTAGGGACTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGATGAAA---A
droEug1 scf7180000409672:3539283-3539415 - A-TTC---------------------------------------AGAA-----------------CCGTCCCAATTTTCTTTCAGGGTCTCGATGCCATACCAGATGAGAAAACCAATTAATTTAA-ATTAAGT----G-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGCTTAGTTGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr2R:9047003-9047279 + A-ATCAT----------------T---------------TACAAAAAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTT------------TTT---G--------------------GTTTTTCCTGTAGTTCCTT--ACAGATTTTT-TTTTGCT--GCCTCA--GGTGTAAAG----CT--T------CTTTCTC--TATAGGGTCTTGAACAAATTCCCGATGAAG------AGGTGAAGAAGGAGGAGA---A
droSim2 2r:9714747-9715048 + dsi_4867 G-CACGCTCATTAGAAGAGTTTTTTAAACTTAAATCATTTACAAAGAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGAAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G--------------------GTTTTTCCTGTAGTTCCTC--ACAGATTTTG-TT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGA---------
droSec2 scaffold_1:6569925-6570187 + A-CAA---------------------------------------AGAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G--------------------GTTTCTCCTGTAGTTCCTC--ACAGATTTTG-TT--GCT-TG-CCCA--GGTGTAAAG----CT--T------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGA---------
droYak3 2R:7918212-7918457 - -------------------------------------------------------------------------------TTGCAGGGTCTGGATGCCATACCGGATGAGAAAACAAACTAATTTTA-ATTAAGT----A-AAGTTTTC------CG-TCTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G-------------------AGTTTTTCCTGTAGTTCTTC--ACAGATTGGT-AT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTTTC--TATAGGGACTCGAGCAGATTCCCGATGAAG------AGGAGAAGAAGGAGGAAA---A
droEre2 scaffold_4845:16775032-16775296 - A-A-----------------------------------------AGAG-----------------CCGTACCAATTTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAGT----A-GAGTTTTC------CG-TCTAAGCTTAAGTGCAA--AGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G-------------------AGTTTTTCCTGTAGTTCTCC--ACAGATTTGT-AT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTTTC--TGTAGGGACTCGAACAAATTCCCGATGAAG------AGGAGAAGAAGGAGGAAA---A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
A-CTCAG-------------CT-TCC------------------CGAA--------TTT-------TGAA--TTTTTATTTCCAGGGTCTCGAATCGATACCAGATGAGAAAAAGAATTAATTTTA-AAAAAATTACTGCAAATGTGTTGATTGAT-TTAAATTTTAAGTGCAAAAAGTGAATAAATCAGAAA---------CTAAA----------------GTGAGATTT--------TAAGAGTTTACT---------------------------TCATGGAGAAGCGCCCTTTTTT---------------------------------------------------------------TGTTTTT--TACAGGGTCTAGAGTCAATATCCGATGAAAATCGCGATGAGGAGAACGATCAAA---CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................CGATACCAGATGAGAAAAAGA...........................................................................................................................................................................................................................................................................................................................2115.00500320
.....................................................................................................................................................................................ATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................1915.00500140
.................................................................................................................................................................................GTGAATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................2314.00400220
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAAT....................................................................................................................................................................................................................................................2113.00300120
....................................................................................................................................ATTACTGCAAATGTGTTGATTGAT-..................................................................................................................................................................................................................................................................................2413.00300030
................................................................................................................................................................................AGTGAATAAATCAGAAA---------CTAAA----------------GTGA............................................................................................................................................................................................................2613.00301020
..............................................................................................................................................ATGTGTTGATTGAT-TTAAAT............................................................................................................................................................................................................................................................................2012.00200020
.......................................................................................................................................ACTGCAAATGTGTTGATTGA....................................................................................................................................................................................................................................................................................2012.00200020
.............................................................................................................................................................TTAAATTTTAAGTGCAAAAA..............................................................................................................................................................................................................................................................2012.00200020
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAATCAG.................................................................................................................................................................................................................................................2412.00200020
..............................................................................................................................................ATGTGTTGATTGAT-TTAAA.............................................................................................................................................................................................................................................................................1912.00200020
....................................................................................................................................................................TTAAGTGCAAAAAGTGAATAAAT....................................................................................................................................................................................................................................................2312.00200110
.....................................................................................................................................................................TAAGTGCAAAAAGTGAATAAAT....................................................................................................................................................................................................................................................2212.00200020
...............................................................................................................................................................................AAGTGAATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................2512.00200110
...................................................................................................................................................................TTTAAGTGCAAAAAGTGAAT........................................................................................................................................................................................................................................................2012.00200020
...................................................................................................................................AATTACTGCAAATGTGTTGATT......................................................................................................................................................................................................................................................................................2212.00200020
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAATCAGAA...............................................................................................................................................................................................................................................2611.00100010
.............................................................................................................................................................................AAAAGTGAATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................2711.00100010
....................................................................................................................................ATTACTGCAAATGTGTTGAT.......................................................................................................................................................................................................................................................................................2011.00100010
.....................................................................................................................................................................................ATAAATCAGAAA---------CTAAA----------------GTG.............................................................................................................................................................................................................2011.00101000
...........................................................................................................................................CAAATGTGTTGATTGAT-TTAAA.............................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................ATTACTGCAAATGTGTTGATT......................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................ACCAGATGAGAAAAAGAATT........................................................................................................................................................................................................................................................................................................................2011.00101000
..........................................................................................CGAATCGATACCAGATGAG..................................................................................................................................................................................................................................................................................................................................1911.00100010
.....................................................................................................................................TTACTGCAAATGTGTTGATTGA....................................................................................................................................................................................................................................................................................2211.00100010
.......................................................................................TCTCGAATCGATACCAGATGAG..................................................................................................................................................................................................................................................................................................................................2211.00100100
....................................................................................................................................ATTACTGCAAATGTGTTGATTGA....................................................................................................................................................................................................................................................................................2311.00100010
.............................................................................................................................................AATGTGTTGATTGAT-TTAA..............................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................AGTGCAAAAAGTGAATAAATCAGA................................................................................................................................................................................................................................................2411.00100010
................................................................................................................................................GTGTTGATTGAT-TTAAAT............................................................................................................................................................................................................................................................................1811.00100010
.....................................................................................................................................................................TAAGTGCAAAAAGTGAATAAATCAGA................................................................................................................................................................................................................................................2611.00100100
......................................................................................................................................................................AAGTGCAAAAAGTGAATA.......................................................................................................................................................................................................................................................1811.00100010
........................................................................................................................................CTGCAAATGTGTTGATTGAT-..................................................................................................................................................................................................................................................................................2011.00100010
...................................................................................................................................................................TTTAAGTGCAAAAAGTGAATAAATCAG.................................................................................................................................................................................................................................................2711.00100100
.....................................................................................................................................................GATTGAT-TTAAATTTTAAGT.....................................................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................................................TTAAATTTTAAGTGCAAAAAGTGA..........................................................................................................................................................................................................................................................2411.00100010
................................................................................................GATACCAGATGAGAAAAAGAA..........................................................................................................................................................................................................................................................................................................................2111.00100010
.....................................................................................................................................TTACTGCAAATGTGTTGATT......................................................................................................................................................................................................................................................................................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................GATGAAAATCGCGATGAGGA...............2011.00100100
...........................................................................................GAATCGATACCAGATGAGAAAAAGA...........................................................................................................................................................................................................................................................................................................................2511.00100010
................................................................................................................................................................................AGTGAATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................2411.00100100
...................................................................................................................................................TTGATTGAT-TTAAATTTTAAGT.....................................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................TTTAAGTGCAAAAAGTGAATAAATC...................................................................................................................................................................................................................................................2511.00100001
.........................................................................................................................................TGCAAATGTGTTGATTGAT-TTAAAT............................................................................................................................................................................................................................................................................2511.00100010
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAA.....................................................................................................................................................................................................................................................2011.00100010
....................................................................................................................................................................TTAAGTGCAAAAAGTGAAT........................................................................................................................................................................................................................................................1911.00100100
..................................................................................................TACCAGATGAGAAAAAGA...........................................................................................................................................................................................................................................................................................................................1811.00100010
.........................................................................................TCGAATCGATACCAGATGAGA.................................................................................................................................................................................................................................................................................................................................2111.00100100
............................................................................................................................................AAATGTGTTGATTGAT-TTAAATTTT.........................................................................................................................................................................................................................................................................2511.00100010
...........................................................................................GAATCGATACCAGATGAGA.................................................................................................................................................................................................................................................................................................................................1911.00101000
................................................................................................GATACCAGATGAGAAAAAGA...........................................................................................................................................................................................................................................................................................................................2011.00100010
.......................................................................................................GATGAGAAAAAGAATTAAT.....................................................................................................................................................................................................................................................................................................................1911.00100010
....................................................................................................................................................................TTAAGTGCAAAAAGTGAATAAATC...................................................................................................................................................................................................................................................2411.00100010
.........................................................................................................................................................GAT-TTAAATTTTAAGTGCAAAA...............................................................................................................................................................................................................................................................2211.00100010
...................................................................................................................................................................TTTAAGTGCAAAAAGTGAATAAAT....................................................................................................................................................................................................................................................2411.00100010
............................................................................................................................TA-AAAAAATTACTGCAAATGT.............................................................................................................................................................................................................................................................................................2111.00100010
.................................................................................................................................................................................GTGAATAAATCAGAAA---------CTAAA----------------GTGA............................................................................................................................................................................................................2511.00100010
................................................................................................................................................................................AGTGAATAAATCAGAAA---------CTAAA----------------GTGAA...........................................................................................................................................................................................................2711.00101000
......................................................................................................................................................ATTGAT-TTAAATTTTAAGTGCAAA................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................TACTGCAAATGTGTTGATT......................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................AATTTTAAGTGCAAAAAGTGAAT........................................................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................TAAATTTTAAGTGCAAAAAGTGAAT........................................................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................GAATAAATCAGAAA---------CTAAA----------------GT..............................................................................................................................................................................................................2111.00100010
...............................................................................................................................................................AAATTTTAAGTGCAAAAAGTGAAT........................................................................................................................................................................................................................................................2411.00100010
.....................................................................................................................................TTACTGCAAATGTGTTGATTG.....................................................................................................................................................................................................................................................................................2111.00100100
.........................................................................................................................................................................................ATCAGAAA---------CTAAA----------------GTGAGA..........................................................................................................................................................................................................1911.00100010
...............................................................................................CGATACCAGATGAGAAAAAGAATTAAT.....................................................................................................................................................................................................................................................................................................................2711.00100010
.........................................................................................................................................................................TGCAAAAAGTGAATAAATC...................................................................................................................................................................................................................................................1911.00100010
...................................................................................................................................AATTACTGCAAATGTGTTGATTGAT-..................................................................................................................................................................................................................................................................................2511.00100100
.............................................................................................................................................AATGTGTTGATTGAT-TTAAA.............................................................................................................................................................................................................................................................................2011.00100100
............................................................................................................................................AAATGTGTTGATTGAT-TTAAAT............................................................................................................................................................................................................................................................................2211.00100010
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAATCAGA................................................................................................................................................................................................................................................2511.00100010
........................................................................................................................................CTGCAAATGTGTTGATTGAT-TTAAA.............................................................................................................................................................................................................................................................................2511.00100010
....................................................................................................................................................................TTAAGTGCAAAAAGTGAATA.......................................................................................................................................................................................................................................................2011.00100010
......................................................................................................................................TACTGCAAATGTGTTGATTGAT-TT................................................................................................................................................................................................................................................................................2411.00100010
......................................................................................................................................................................AAGTGCAAAAAGTGAATAAATCAGAAA---------.....................................................................................................................................................................................................................................2711.00100010
.............................................................................................ATCGATACCAGATGAGAAAAAGA...........................................................................................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................................GAT-TTAAATTTTAAGTGCAAAAAGTGA..........................................................................................................................................................................................................................................................2711.00100010
................................................................................................................AAGAATTAATTTTA-AAAAAATTA.......................................................................................................................................................................................................................................................................................................2311.00100010
......................................................................................................................................TACTGCAAATGTGTTGATTGAT-T.................................................................................................................................................................................................................................................................................2311.00100010
...........................................................................................................................................................................................CAGAAA---------CTAAA----------------GTGAGAA.........................................................................................................................................................................................................1820.50101000
droVir3
C-TTCAA----------------------------------------ATTTTAAAAAATTGAGAATTCGTCTCATTATTTTACAGGGTCTCCATGCTATACCAGATGAGTCTAAAAAATAAATGTA-ACGTAGT---TG-AAAT-T--------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAATT-------TACAGTACGAAA----------------TTGAAAAGT--------TATATCTTTTAG------------TTA---GGGTTTTTTTTAGCAGGTTGCGCTCGTTTAGTAGTTTCGT--AGAATCTAGT-GTC-TAT-TA-CCG---ATTCTCAAG----GG--C------ATTTATT--TACAGGGCCTGGAAGAGATTGAGGACGAAG------AAGAAG---------AGA---ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................GTTAAGCTTAAGTGCAAAA...............................................................................................................................................................................................................................................................1914.004000000000000000003010000000000000000000000000000000000000000000
.................................................................................................................................................................AGCTTAAGTGCAAAAAGTG...........................................................................................................................................................................................................................................................1912.002000000000000000001000000000000000000000000000000000000000000100
............................................................................................ATGCTATACCAGATGAGTCTAAAA...........................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................TAAAAAATAAATGTA-ACGT............................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................T--------CT-GTTAAGCTTAAGTGCAAAA...............................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAAGTGAATAAATT-------TACAGTA.....................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................GGGCCTGGAAGAGATTGAGGAC................................2211.001100000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................CT-GTTAAGCTTAAGTGCAAA................................................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................AAATT-------TACAGTACGAAA----------------TT..............................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
..................................................................................................................................TAGT---TG-AAAT-T--------CT-GTTAAGCT..........................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGCTTAAGTGCAAAAAGTGAATAA......................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................................................................................................AAGTGAATAAATT-------TACAGTACG...................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................CCATGCTATACCAGATGAGT.................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................CT-GTTAAGCTTAAGTGCAAAA...............................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................ATACCAGATGAGTCTAAAA...........................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ATAAATT-------TACAGTACGAAA----------------T...............................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AT-T--------CT-GTTAAGCTTAAGTGCAAAAAG.............................................................................................................................................................................................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................................................................................GTTAAGCTTAAGTGCAAAAA..............................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................CT-GTTAAGCTTAAGTGCAAAAAGT............................................................................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
.............................................................................................TGCTATACCAGATGAGTCTAAA............................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................AATGTA-ACGTAGT---TG-AAAT-T--------CT-G.................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................GTA-ACGTAGT---TG-AAAT-T--------CT-GT................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................AATT-------TACAGTACGAAA----------------TTGAA...........................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CTAAAAAATAAATGTA-ACGTAGT---TG-A..................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................TGCTATACCAGATGAGTCTA..............................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................AGATGAGTCTAAAAAATAAATGTA-AC..............................................................................................................................................................................................................................................................................................................2611.001000000000000000000100000000000000000000000000000000000000000000
.................................................................................................................................GTAGT---TG-AAAT-T--------CT-GTTAAGCT..........................................................................................................................................................................................................................................................................2211.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................T-GTTAAGCTTAAGTGCAAAAA..............................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................ATAAATGTA-ACGTAGT---TG-AAA................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000
.................................................................................................................................................T--------CT-GTTAAGCTTAAGTGCAAAAAGTG...........................................................................................................................................................................................................................................................2611.001000000000100000000000000000000000000000000000000000000000000000
.................................................................................................................................................................AGCTTAAGTGCAAAAAGTGAATAAA.....................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................G-AAAT-T--------CT-GTTAAGCTTAAGTGCAA.................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................T-------TACAGTACGAAA----------------TTGAAAAAA--------A..............................................................................................................................................................................................2340.251000000000000010000000000000000000000000000000000000000000000000
droMoj3
C-TTCAA---------------------------------------TATTTTGAAAATTCGAGAATATGTTTCATTCTCTTACAGGGTCTTAATGCTGTACCAGATGAGGATAGGAAGTAAATGTAAACCTAGT---TG-AAAT-T--------CT-GTTAAGCTTAAGTGCAAAAAGTGAATAAAAT-------TACAAATCGAAACTGAATTAAAATTGGAGTTAAAATT--------GAAAATA-TATA------------TTTAAGT-------------------AG-TATTTCTTTAGTTCTCA--TTAGAGTTTA-T---GCT--------------------CGGTG--CTTTCGAATTCATT--TACA------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................TTAATGCTGTACCAGATGAGGATAGGA...........................................................................................................................................................................................................................................................................................................................2711.001000001
.......................................................................................................................................................................................AAAAT-------TACAAATCGAAACT..............................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................CT-GTTAAGCTTAAGTGCAAAAAGT............................................................................................................................................................................................................................................................2411.001100000
...................................................................................................................AAGTAAATGTAAACCTAGT---TG-AAAT-T--------.....................................................................................................................................................................................................................................................................................2611.001100000
..................................................................................................TACCAGATGAGGATAGGA...........................................................................................................................................................................................................................................................................................................................1811.001000100
......................................................................................................AGATGAGGATAGGAAGTAAATGTAAAC..............................................................................................................................................................................................................................................................................................................2711.001000001
.............................................................................................................................................................GTTAAGCTTAAGTGCAAAA...............................................................................................................................................................................................................................................................1911.001001000
droGri2
A-AC----------------------------------------------------------------TTCTCATTCTCTTGCAGGGTCTCCATGCTATTCCAGATGAGTCCAAAAATTAAATGTT-ATGTAGT---TG-AAAT-T--------CT-ATTAAGCTTAAGTGCAA-AAGTGAATAAATA-------TACAGTACGAAA----------------TTGAAAATCGAAAATTTTAAAGGCTCATATTTCAGTTATTGTTA---G-------------------A-----ACTTGT------------AGAATTGTATT--ATT-TA-GCGA--TATTT-AAG----TG--C------ATTCCTT--TACAGGGTCTAGAAGAGATTGAAGATGAGGATG---AAGATGTTGCGAATAAAAAGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
C-CTCTG-------------TATTGAGACAC-------------------------------------AATTCATTTACTTGCAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAGT----G-AAATTT--------CT-TTAAAACTTAAGTGCAA-AAGTGAATAAACG-------TAAAGTGCGGAA----------------GTGAAAGA------------TTGGTCGTT------------GTA---G-------------------AG-TTTTCCTGTAGTTTTCC--TTCCA------------T-TG-CCCA--GATCTATACCCAGCC--CTC----TTCTCTT--CCTAGGGACTTGACGCCATTCCCGATGATGAAG---AAGACGATCAGAATAAGG---ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................................................................................ATACCAGACGAGAAGAAGGA..........................................................................................................................................................................................................................................................................................................................2013.0030200100000
...............................................................................................................................................TTT--------CT-TTAAAACTTAAGTGCAA-AAGT............................................................................................................................................................................................................................................................2612.0020020000000
.....................................................................................GGCCTCGATGCCATACCAGACGAGA.................................................................................................................................................................................................................................................................................................................................2512.0020200000000
.................................................................................................................................................................................GTGAATAAACG-------TAAAGTGCGGAA----------------GTG.............................................................................................................................................................................................................2612.0020100001000
..............................................................................................................AGAAGGAATAAGTTGA-TCT.............................................................................................................................................................................................................................................................................................................1912.0020110000000
.....................................................................................................CAGACGAGAAGAAGGAAT........................................................................................................................................................................................................................................................................................................................1811.0010100000000
.....................................................................................................................ATAAGTTGA-TCTAAGT----G-AAA................................................................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................CCCGATGATGAAG---AAGACGATCAGAA.........2611.0010000000010
.............................................................................................TGCCATACCAGACGAGAAGAAGG...........................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................TGAATAAACG-------TAAAGTGC....................................................................................................................................................................................................................................1811.0010010000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAG---AAGACGATCAGAATAA......2411.0010000000010
............................CAC-------------------------------------AATTCATTTACTTGCAG..........................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................................................................................TAAGTTGA-TCTAAGT----G-AAATT..............................................................................................................................................................................................................................................................................................2111.0010000001000
.............................................................................................TGCCATACCAGACGAGAAGAAGGA..........................................................................................................................................................................................................................................................................................................................2411.0010100000000
..................................................................................................TACCAGACGAGAAGAAGGAAT........................................................................................................................................................................................................................................................................................................................2111.0010000001000
...................................................................................................................................................................CTTAAGTGCAA-AAGTGAATAAA.....................................................................................................................................................................................................................................................2211.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATGATGAAG---AAGACGAT..............2311.0010000000010
........................................................................CATTTACTTGCAGGGCCTCGATGCC..............................................................................................................................................................................................................................................................................................................................................2511.0010010000000
..........................................................................................................................................................................................CG-------TAAAGTGCGGAA----------------GTGAAA..........................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAG---AAGACGATCAGAATAAAA---.2611.0010000000100
...............................................................................................................................................................................................................................................................................................................................................................................................TGACGCCATTCCCGATGATGAAG---AAGA..................2711.0010100000000
.....................................................................................................................................................................................ATAAACG-------TAAAGTGCGGAA----------------................................................................................................................................................................................................................1911.0010010000000
..............................................................................................GCCATACCAGACGAGAAGAAGGA..........................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGAAG---AAGACGATCAGAATAAGG---.2311.0010100000000
...............................................................................................................GAAGGAATAAGTTGA-TCTAAG..........................................................................................................................................................................................................................................................................................................2111.0010010000000
..........................................................................................................GAGAAGAAGGAATAAGTT...................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................AAGGAATAAGTTGA-TCTAAGT----G-...................................................................................................................................................................................................................................................................................................2211.0010000010000
.............................................................................................................................................................TTAAAACTTAAGTGCAA-AAGTGA..........................................................................................................................................................................................................................................................2311.0010100000000
............................................................................................................................................AAATTT--------CT-TTAAAACTTAAGTGCA..................................................................................................................................................................................................................................................................2411.0010001000000
....................................................................................................................................................................................AATAAACG-------TAAAGTGCGGAA----------------GTGA............................................................................................................................................................................................................2411.0010000001000
.........................................................................................................................................................................................ACG-------TAAAGTGCGGAA----------------GTG.............................................................................................................................................................................................................1811.0010100000000
.........................................................................................................................................................................................ACG-------TAAAGTGCGGAA----------------GTGAA...........................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................GAATAAACG-------TAAAGTGCGGAA----------------................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................ACTTAAGTGCAA-AAGTGAATA.......................................................................................................................................................................................................................................................2111.0010000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................TGAAG---AAGACGATCAGAATA.......2011.0010100000000
..................................................................................................................................................................................TGAATAAACG-------TAAAGTGCGGAA----------------GTG.............................................................................................................................................................................................................2511.0010100000000
........................................................................................................ACGAGAAGAAGGAATAAGTTGA-................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................ATACCAGACGAGAAGAAGG...........................................................................................................................................................................................................................................................................................................................1911.0010000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATGATGAAG---AAGACGATCAGAA.........2811.0010100000000
...................................................................................................................................................................................................TAAAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................1920.5010000001000
....................................................................................................................................................................................................AAAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................1840.2510000100000
droPer2
A-TTG--------------------AGACAC-------------------------------------AATTCATTTACTTGCAGGGCCTCGATGCCATACCAGACGAGAAGAAGGAATAAGTTGA-TCTAAGT----G-AAATTT--------CT-TTAAAACTTAAGTGCAA-AAGTGAATAAACG-------TAAAGTGCGGAA----------------GTGAAAGA------------TTGGTCGTT------------GTA---G-------------------AG-TTTTCCTGTAGTTTTCC--TTCCA------------T-TG-CCCA--GATCTATACCCAGCC--CTC----TTCTCTT--CCTAGGGACTTGACGCCATTCCCGATGATGAAG---AAGACGATCAGAATAAGGAG-CSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................G-------TAAAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................2013.003000003
.....................................................................................................................ATAAGTTGA-TCTAAGT----G-A..................................................................................................................................................................................................................................................................................................1813.003300000
...................................................................................................................................................................................GAATAAACG-------TAAAGTGCGGAA----------------GT..............................................................................................................................................................................................................2313.003300000
.................................................................................................................................................................................GTGAATAAACG-------TAAAGTGCGGA.................................................................................................................................................................................................................................2212.002200000
.......................................................................................................................................................................................................................................................................................................TTCCTGTAGTTTTCC--TTCCA------------T-TG-CCCA--G..........................................................................................2812.002200000
.......................................................................................................................AAGTTGA-TCTAAGT----G-AAAT...............................................................................................................................................................................................................................................................................................1912.002200000
...................................................................................................ACCAGACGAGAAGAAGGAATA.......................................................................................................................................................................................................................................................................................................................2112.002000002
.................................................................................................ATACCAGACGAGAAGAAGGA..........................................................................................................................................................................................................................................................................................................................2012.002001001
...........................................................................................................................................................................................G-------TAAAGTGCGGAA----------------GTGAAA..........................................................................................................................................................................................................1912.002000002
........................................................................................................................AGTTGA-TCTAAGT----G-AAATTT--------C....................................................................................................................................................................................................................................................................................2111.001000001
...................................................................................................ACCAGACGAGAAGAAGGAAT........................................................................................................................................................................................................................................................................................................................2011.001000001
.......................................................................................................................AAGTTGA-TCTAAGT----G-AAATT..............................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................CGAGAAGAAGGAATAAGT....................................................................................................................................................................................................................................................................................................................1811.001010000
........................................................................................................................AGTTGA-TCTAAGT----G-AAATTT--------.....................................................................................................................................................................................................................................................................................2011.001000001
.....................................................................................GGCCTCGATGCCATACCAGACGAGAAGA..............................................................................................................................................................................................................................................................................................................................2811.001010000
........................................................................................................................................................................................AACG-------TAAAGTGCGGAA----------------GT..............................................................................................................................................................................................................1811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AGACGATCAGAATAAGGAG-C2011.001100000
.................................................................................................................................................................................................................................GAAAGA------------TTGGTCGTT------------GTA---G-------------------AG-TTTTCCT...................................................................................................................................2811.001000001
..........................................................................................................GAGAAGAAGGAATAAGTTGA-TCT.............................................................................................................................................................................................................................................................................................................2311.001000001
...................................................................................................................................................................................................TAAAGTGCGGAA----------------GTGAAA..........................................................................................................................................................................................................1811.001010000
.....................................................................................................CAGACGAGAAGAAGGAATA.......................................................................................................................................................................................................................................................................................................................1911.001000001
...............................................................................................................GAAGGAATAAGTTGA-TCTAAGT----G-AAA................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................................................................................................................................GTGAATAAACG-------TAAAGTGCGGAA----------------GT..............................................................................................................................................................................................................2511.001000001
....................................................................................................................................................................................................................................................TGGTCGTT------------GTA---G-------------------AG-TTTTCCTGTAGTT.............................................................................................................................2711.001000001
...................................................................................................................................................................CTTAAGTGCAA-AAGTGAATA.......................................................................................................................................................................................................................................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAG---AAGACGATCAGAATAAGGAG-C2411.001100000
....................................................................................................................................................................................................................................AGA------------TTGGTCGTT------------GTA---G-------------------AA-..........................................................................................................................................1811.001100000
......................................................................................................................TAAGTTGA-TCTAAGT----G-AAATTT--------CT-TTA...............................................................................................................................................................................................................................................................................2711.001010000
.......................................................................................................................................................................................AAACG-------TAAAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................2411.001000001
.................................................................................................ATACCAGACGAGAAGAAGGAATA.......................................................................................................................................................................................................................................................................................................................2311.001010000
.............................................................................................................................................................................A-AAGTGAATAAACG-------TAAAGTGCGGAA----------------................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATGATGAAG---AAGACGATCA............2511.001000001
........................................................................................................................AGTTGA-TCTAAGT----G-AAATTT--------CT-TTAA..............................................................................................................................................................................................................................................................................2611.001010000
.................................................................................................ATACCAGACGAGAAGAAGGAATAAGT....................................................................................................................................................................................................................................................................................................................2611.001000001
.......................................................................................................................................................................................AAACG-------TAAAGTGCGGAA----------------GT..............................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................TAAAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................1920.501000001
droAna3
A-TTT---------------------------------------CGAA-----------------TTTCGAAAATTTAATTGCAGGGTCTGGATGCCATACCGGATGAGAA---GAAATAGGTTGA-ATTAAGT----A-CA-TTTTT------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATG--AAACGTATAGTGCGGAA----------------GTGAAAGTC--------TCTCGAGTGGTT------------TTA---G-------------------A-TTTTTCCTGTAGTCCTCT--TCCGATTTGG-T---------CCTTG--GGTGTATAG----CT--A-------TTTAAT--TCCAGGGTCTTGAAGAAATTCCCGAGGAGG------AGGAAAAGAAAG---AAG---ASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................GATGCCATACCGGATGAGAA---.............................................................................................................................................................................................................................................................................................................................2012.002000020
..........................................................................................................................................................................................TG--AAACGTATAGTGCGGAA----------------GTGAAAAAA--------...............................................................................................................................................................................................2812.002000002
..........................................................................................................................................................CG-ATTAAGCTTAAGTGCAA-AAGTGAAT........................................................................................................................................................................................................................................................2712.002020000
...............................................................................................................................................................................................AACGTATAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................2312.002000002
...........................................................................................................................................................................................G--AAACGTATAGTGCGGAA----------------GTG.............................................................................................................................................................................................................2112.002000002
........................................................................................CTGGATGCCATACCGGATGAGAA---.............................................................................................................................................................................................................................................................................................................................2312.002010001
...........................................................................................................................................................................................G--AAACGTATAGTGCGGAA----------------GT..............................................................................................................................................................................................................2012.002000020
...........................................................................................................................................................................................G--AAACGTATAGTGCGGAA----------------GTGAAA..........................................................................................................................................................................................................2411.001000010
..............................................................................................................................................................TTAAGCTTAAGTGCAA-AAGTGA..........................................................................................................................................................................................................................................................2211.001000010
..........................................................................................GGATGCCATACCGGATGAGAA---GA...........................................................................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................................................TTTTT------CG-ATTAAGCTTAAGTGCAA-AAGT............................................................................................................................................................................................................................................................2811.001000010
............................................................................................ATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................1811.001000001
........................................................................................CTGGATGCCATACCGGATGAGAA---GA...........................................................................................................................................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................................................TG--AAACGTATAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................2611.001000100
............................................................................................ATGCCATACCGGATGAGAA---.............................................................................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................GCCATACCGGATGAGAA---G............................................................................................................................................................................................................................................................................................................................1811.001000001
.......................................................................................................................................................................................AAATG--AAACGTATAGTGCGGAA----------------GT..............................................................................................................................................................................................................2411.001010000
..............................................................................................................................................................................................AAACGTATAGTGCGGAA----------------GTGAAAAAA--------...............................................................................................................................................................................................2611.001000010
..........................................................................................GGATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................1911.001000010
........................................................................................CTGGATGCCATACCGGATGAGAA---G............................................................................................................................................................................................................................................................................................................................2411.001010000
.............................................................................................................................................................................A-AAGTGAATAAATG--AAACGTATAGC......................................................................................................................................................................................................................................2511.001010000
................................................................................................................................................................................................ACGTATAGTGCGGAA----------------GTGAAAA.........................................................................................................................................................................................................2211.001000001
.........................................................................................................................................................................................ATG--AAACGTATAGTGCGGAA----------------................................................................................................................................................................................................................2011.001010000
................................................................................................................................................................................................ACGTATAGTGCGGAA----------------GTGAAAAA........................................................................................................................................................................................................2311.001000001
......................................................................................................................................................................AAGTGCAA-AAGTGAATAAATG--AAACG............................................................................................................................................................................................................................................2611.001000010
.................................................................................................ATACCGGATGAGAA---GAAAT........................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................ATAGGTTGA-ATTAAGT----A-CA-TT..............................................................................................................................................................................................................................................................................................2111.001000010
...................................................................................................ACCGGATGAGAA---GAAATA.......................................................................................................................................................................................................................................................................................................................1811.001100000
........................................................................................CTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2211.001100000
.................................................................................................ATACCGGATGAGAA---GAAATAGGTTGA-................................................................................................................................................................................................................................................................................................................2611.001100000
........................................................................................................................................................................................AATG--AAACGTATAGTGCGGAA----------------GTG.............................................................................................................................................................................................................2411.001000001
......................................................................................................................TAGGTTGA-ATTAAGT----A-CA-TTTTT------CG-AT................................................................................................................................................................................................................................................................................2711.001000001
..........................................................................................................................................................CG-ATTAAGCTTAAGTGCAA-AAGTGA..........................................................................................................................................................................................................................................................2511.001000010
.................................................................................................ATACCGGATGAGAA---GAAA.........................................................................................................................................................................................................................................................................................................................1811.001100000
...................................................................................................................................AGT----A-CA-TTTTT------CG-ATTAAGCT..........................................................................................................................................................................................................................................................................2111.001000010
.........................................................................................TGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2111.001000010
droBip1
C-CTTAT----------------TCCGAAAT-------------------------------------AA---TTTTAATTGCAGGGTCTGGATGCCATACCGGATGAGAAAAAGGAATAGGTTGA-ATTAAGT----A-AAACTTTT------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATG--AAACATTTAGTGCGAAA----------------GTGAAAGCT--------CCTTGGCTCGTT------------TTA---G---------------------ATTCTCCTGTAGTCCTTCT-TCGGCGT-A---T--T-T-TG-CTTG--GGTGTATAG----CT--A-------TTTCAT--TGCAGGGTCTTGAAGAAATTCCCGATGAGG------AGGAAAAGAA---ACAAG---ASizeHit CountTotal NormTotal
No Reads
droKik1
--------------------------------------------------------------------------TTTCCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAAAGAACTAGTTTGA-ATTAAGT----C-AAATTTTT------C--TTTAAACTTAAGGGCAA-AAGTGAATAAACG--AAGCGTTTAGTGCGAAA----------------GTGATAGTT--------CAATTGGTGGCC------------TTTGTAG-------------------AGTTTTTCCTGTAGTTTCCC--TCTTAGTTTC-------T--C-CCTC--GGTGTACAG--AGCC--A-------TTTCTT--TCTAGGGACTCGAGCAAATTCCTGATGAAG------AGGAGG------ACCAGA---ASizeHit CountTotal NormTotal
No Reads
droFic1
A-TTC---------------------------------------AGAA-----------------CCGTCCCGATTTTTTTTCAGGGTCTGGATGCCATACCGGATGAGAAAA---AATAATTCGA-TTTAAGT----G-AAGTTTTC------CG-ATTAAGCTTAAGTGCAA-AAGTGAATAAATA--AAACGTATAGTTCGGAA----------------GTGATAGTT--------GAA-TGGTCGTT------------TTT---G-------------------CGTTTTTCCTGTAGTTTTCC--C-TGAGTTTC--T--GTC-CA-CTGA--GATGTAAAC----CCCGA-------AATCTT--TTTAGGGACTTGAACAAATTCCCGATGAAG------AGGAAGATAAGGATCGAA---ASizeHit CountTotal NormTotal
No Reads
droEle1
AATAC---------------------------------------AGAA-----------------TCGTCCTTATTTTATTGCAGGGTCTGGATGCCATACCGGATGAGAAAACTAAATAATTTGA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTTTAGTTGGGAA----------------GT------C--------GAATAGCTTGTT------------TCT---G-------------------AGTTTTCCTTGTAGTGTTTTT-TCAGAGTTCT--T--GCC--CTCTCATGTGTGTAAAG----CCCTA-------TTTCTT--TTTAGGGACTTGAACAAATTCCCGATGAGGAGG---AGGACAATAAGGATCAAA---GSizeHit CountTotal NormTotal
No Reads
droRho1
AATTC---------------------------------------AGAA-----------------TCGTCCTTAATTTCTTGCAGGGTCTGGACGCCATACCGGATGAGAAAACTAATTAATTTGA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTATAGTTGGGAA----------------GTGATAGTT--------GAATTGGTCGTC------------TCT---G-------------------AGTTTCTCCTGTAGTTTTTTTTACAGAGTTTT-T---GCCCTG-CTCA--GGTGTAAAG----CT--A------CTTTCTT--TTTAGGGACTTGAGCAAATTCCTGATGAAG------AAGAGGAAAAGGAACAA----ASizeHit CountTotal NormTotal
No Reads
droBia1
T-C-----------------------------------------AAAA-----------------CCATTCCCGTTCTCTTGCAGGGTCTGGATGCTATACCGGATGAGAAAACTAATTAAATGTA-TTTAAGT----G-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTATAGTTGGAAA----------------GTGATAGTT--------GAATTGGTCGCA------------TTT---T-------------------AGTTTTCCCTGTAGTTTTCC--ACAGATGTGT-TTTTCCC-TG-CTTT--GGTGTAAAG----AC--C------CTTTCTT--TCCAGGGACTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGACGAGA---ASizeHit CountTotal NormTotal
No Reads
droTak1
A-TTC---------------------------------------AGAA-----------------TTCTCTCAATTTTCTTGCAGGGTCTGGATGCTATACCGGATGAGAAAACTAAATAAAT-----TTAAGT----A-AAGTTTTC------CCTTTTAAGCTTAAGTGCAA-AAGTGAATAAA-------------ATTCGGAA----------------GTGATAGTT--------GAATGGGTCGTG------------CTT---G-------------------AGTTTTTCCTGTAGTTTTCC--ACAGATTTGT-TT--CCC-TG-CCCA--GGTGTAAAG----AC--C------CT-TTTT--TTTAGGGACTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGATGAAA---ASizeHit CountTotal NormTotal
No Reads
droEug1
A-TTC---------------------------------------AGAA-----------------CCGTCCCAATTTTCTTTCAGGGTCTCGATGCCATACCAGATGAGAAAACCAATTAATTTAA-ATTAAGT----G-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGCTTAGTTGGGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
A-ATCAT----------------T---------------TACAAAAAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTT------------TTT---G--------------------GTTTTTCCTGTAGTTCCTT--ACAGATTTTT-TTTTGCT--GCCTCA--GGTGTAAAG----CT--T------CTTTCTC--TATAGGGTCTTGAACAAATTCCCGATGAAG------AGGTGAAGAAGGAGGAGA---ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................TACCGGATGAGAAAACGAACTAATTT...................................................................................................................................................................................................................................................................................................................26139.003900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000055310800000000000000020100300000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................CCGGATGAGAAAACGAACTAATTTT..................................................................................................................................................................................................................................................................................................................25120.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030411200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................20111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080000000000000000000000000000000000000000000000000000000000000000000000000000001010000000010000000000000000000000000000
.............................................................................................TGCCATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................25110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100200000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000011000000
.....................................................................................................................................................................TAAGTGCAA-AAGTGAATA.......................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CCGGATGAGAAAACGAACTAATTT...................................................................................................................................................................................................................................................................................................................2418.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................CTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................AAGTGAATAAACG--AAACGTGCAGT......................................................................................................................................................................................................................................2417.0070000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000001010011000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................ACTAATTTTA-ATTAAGT----A-AAGT...............................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ACCGGATGAGAAAACGAACTAATTTT..................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TGGATGCCATACCGGATGAGAAAACGA...........................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001200000
..................................................................................................TACCGGATGAGAAAACGAACTAAT.....................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................TGGATGCCATACCGGATGAGAAAACG............................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000100000
...................................................................................................................................AGT----A-AAGTTTTC------CG-TTTAAGCT..........................................................................................................................................................................................................................................................................2216.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................GGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GAAA...........................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000020000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GAA............................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................ATACCGGATGAGAAAACGAACTAATT....................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000100000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TGCCATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
....................................................................................................CCGGATGAGAAAACGAACTAATTTTA-AT..............................................................................................................................................................................................................................................................................................................2815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TACCGGATGAGAAAACGAACTA.......................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000
............................................................................................ATGCCATACCGGATGAGAAAACG............................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................TAAGTGCAA-AAGTGAATAAACG--AAACG............................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000
.................................................................................................................................................................................GTGAATAAACG--AAACGTGCAGTTCG...................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000020000000000000000000000000000
......................................................................................................................................................................................TAAACG--AAACGTGCAGTTCGGAA----------------GTGA............................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000
..................................................................................................TACCGGATGAGAAAACGAACTAATT....................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AGTTCGGAA----------------GTGATAGTT--------GA.............................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ACCGGATGAGAAAACGAACTAATTT...................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000
.............................................................................................................................................................................A-AAGTGAATAAACG--AAACGTGCA........................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................GATGCCATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000002000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................GGTCTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GA.............................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000
.................................................................................................ATACCGGATGAGAAAACGAACTAATTTT..................................................................................................................................................................................................................................................................................................................2814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AAGTGAATAAACG--AAACGTGCA........................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................ATGCCATACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGATAGTT--------...............................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................AAACGTGCAGTTCGGAA----------------GTGATAGTT--------...............................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TGAATAAACG--AAACGTGCAGTTCGGA.................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................AGTGAATAAACG--AAACGTGCA........................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................A-AAGTGAATAAACG--AAACGTGC.........................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.....................................................................ACCAATCTTCTTGCAGGGTCTGGA..................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................ATGAGAAAACGAACTAATTTT..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTAAGTGCAA-AAGTGAATAAACG--AAA..............................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTATC...........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................GTCTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
G-CACGCTCATTAGAAGAGTTTTTTAAACTTAAATCATTTACAAAGAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGAAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G--------------------GTTTTTCCTGTAGTTCCTC--ACAGATTTTG-TT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGA---------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................TACCGGATGAGAAAACGAACTAAATT...................................................................................................................................................................................................................................................................................................................26114.001400700030310000000
.............................................................................................TGCCATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2519.00900000033003000000
..................................................................................................TACCGGATGAGAAAACGAACTAAAT....................................................................................................................................................................................................................................................................................................................2515.00500200011010000000
.............................................................................................TGCCATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2613.00310100001000000000
.................................................................................................................................................................................................CGTGAAGTTCGGAA----------------GTGATAGTT--------...............................................................................................................................................................................................2312.00200200000000000000
..................................................................................................TACCGGATGAGAAAACGAACTAAT.....................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
............................................................................................ATGCCATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2612.00200100001000000000
.........................................................................................TGGATGCCATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2912.00200010010000000000
...............................................................................................CCATACCGGATGAGAAAACGAACTAAATT...................................................................................................................................................................................................................................................................................................................2912.00200000011000000000
..........................................................................................................................TTTA-ATTAAGT----A-AAGTTTTC------CG-TTTA..............................................................................................................................................................................................................................................................................2612.00200000011000000000
....................................................................................................................................GT----A-AAGTTTTC------CG-TTTAAGCTTA........................................................................................................................................................................................................................................................................2311.00100000000001000000
..................................................................................................................................................................................................GTGAAGTTCGGAA----------------GTGATAGTT--------GAAAA..........................................................................................................................................................................................2711.00101000000000000000
.........................................................................................................................................................................................ACG--AAACGTGAAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2811.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................TTTG-TT--GCT--GCCTCA--GGTG.......................................................................................1911.00110000000000000000
.................................................................................................ATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................ATACCGGATGAGAAAACGAACC........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................................................................................................................................AAACGTGAAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2511.00101000000000000000
...............................................................................................................................................................................................AACGTGAAGTTCGGAA----------------GT..............................................................................................................................................................................................................1811.00100100000000000000
.................................................................................................ATACCGGATGAGAAAACGAACTAAATT...................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
.........................................................................................TGGATGCCATACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
...........................................................................................................................................................................................G--AAACGTGAAGTTCGGA.................................................................................................................................................................................................................................1711.00100000000001000000
..................................................................................................TACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................1611.00100000010000000000
...........................................................................................................................................................................................G--AAACGTGAAGTTCGGAA----------------GT..............................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................TGGATGCCATACCGGATGAGAAAACGAA..........................................................................................................................................................................................................................................................................................................................2811.00100010000000000000
...........................................................................................GATGCCATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
......................................................................................................................................................................................TAAACG--AAACGTGAAGTTCGGAA----------------GTGA............................................................................................................................................................................................................2711.00100000000001000000
................................................................................................CATACCGGATGAGAAAACGAAC.........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................................GCCATACCGGATGAGAAAACGAACTA.......................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
...................................................................................................ACCGGATGAGAAAACGAACTAAATT...................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.....................................................................................................................................................................TAAGTGCAA-AAGTGAATAAACG--AAACG............................................................................................................................................................................................................................................2711.00100000000001000000
................................................................................................................................TTAAGT----A-AAGTTTTC------CG-TTTAAGCT..........................................................................................................................................................................................................................................................................2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................GTCTTGAACAAATTCCCGATGAAG------A.....................2511.00100000000010000000
...........................................................................................................................TTA-ATTAAGT----A-AAGTTTTC------CG-TTTA..............................................................................................................................................................................................................................................................................2511.00100000000010000000
.......................................................................................................................................................................................................................................T--------GAAATGGTCGTC------------TTT---G--------------------GTTT........................................................................................................................................2111.00100000000000001000
...................................................................................................ACCGGATGAGAAAACGAACTAAATTT..................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
..........................................................................................GGATGCCATACCGGATGAGAAAACGA...........................................................................................................................................................................................................................................................................................................................2611.00100000000000100000
...........................................................................................................................................................................................G--AAACGTGAAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2411.00100010000000000000
......................................................................................................................................................................AAGTGCAA-AAGTGAATAAACG--AAACG............................................................................................................................................................................................................................................2611.00100000001000000000
...................................................................................................ACCGGATGAGAAAACGAACTAAAT....................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
.................................................................................................ATACCGGATGAGAAAACGAACTA.......................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
...........................................................................................................................TTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGC...........................................................................................................................................................................................................................................................................2811.00100000001000000000
...........................................................................................................................................................................................G--AAACGTGAAGTTCGGAA----------------GTGATAAA........................................................................................................................................................................................................2611.00100010000000000000
..........................................................................................................................................A-AAGTTTTC------CG-TTTAAGCTTAAGTGC...................................................................................................................................................................................................................................................................2611.00100000000000100000
..................................................................................................TACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.................................................................................................ATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
..............................................................................................GCCATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
................................................................................................................................................................................................ACGTGAAGTTCGGAA----------------GTGATAGTC--------...............................................................................................................................................................................................2411.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATGAAG------AGGAGAAGAAGGA---------2511.00100000000000100000
...........................................................................................................................................................G-TTTAAGCTTAAGTGCAA-AAGTGAATA.......................................................................................................................................................................................................................................................2711.00100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................TTGAACAAATTCCCGATGAAG------AGGAGA................2711.00100000001000000000
.................................................................................................................................TAAGT----A-AAGTTTTC------CG-TTTAAGCTTA........................................................................................................................................................................................................................................................................2611.00100000000001000000
.............................................................................................................................................AGTTTTC------CG-TTTAAGCTTAAGTGCAA-A...............................................................................................................................................................................................................................................................2711.00100000001000000000
...................................................................................................ACCGGATGAGAAAACGAACTAAATTTA-AT..............................................................................................................................................................................................................................................................................................................2911.00100000010000000000
droSec2
A-CAA---------------------------------------AGAA-----------------CCGAACCAATCTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAAATTTA-ATTAAGT----A-AAGTTTTC------CG-TTTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G--------------------GTTTCTCCTGTAGTTCCTC--ACAGATTTTG-TT--GCT-TG-CCCA--GGTGTAAAG----CT--T------CTTTCTCTATATAGGGTCTTGAACAAATTCCCGATGAAG------AGGAGAAGAAGGA---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2213.0030021
..........................................................................................GGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2012.0020020
..................................................................................................................................AAGT----A-AAGTTTTC------CG-TTTAAGCT..........................................................................................................................................................................................................................................................................2312.0020110
..........................................................................................GGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2112.0020200
........................................................................................CTGGATGCCATACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................2612.0020020
..........................................................................................GGATGCCATACCGGATGAGAAAACGAA..........................................................................................................................................................................................................................................................................................................................2712.0020020
..............................................................................................................................................................................................AAACGTGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2512.0020200
..............................................................................................................................................................TTAAGCTTAAGTGCAA-AAGT............................................................................................................................................................................................................................................................2012.0021010
.....................................................................................................................................................................TAAGTGCAA-AAGTGAATAAAC....................................................................................................................................................................................................................................................2112.0020110
......................................................................................GTCTGGATGCCATACCGG.......................................................................................................................................................................................................................................................................................................................................1811.0010001
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GAACG..........................................................................................................................................................................................2611.0010001
..............................................................................................................................................................................................AAACGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................2211.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................TTCCCGATGAAG------AGGAGAAGAA............2211.0010001
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................2111.0010100
..................................................................................................................................AAGT----A-AAGTTTTC------CG-TTTAAG............................................................................................................................................................................................................................................................................2111.0010010
...................................................................................................................................................................................GAATAAACG--AAACGTGCAGTT.....................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................................TAAGCTTAAGTGCAA-AAGTGAAT........................................................................................................................................................................................................................................................2311.0010010
................................................................................................................................................TTTC------CG-TTTAAGCTTAAGTGCAA-A...............................................................................................................................................................................................................................................................2411.0010001
..............................................................................................................................................................TTAAGCTTAAGTGCAA-AAGTG...........................................................................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................AGCTTAAGTGCAA-AAGTGA..........................................................................................................................................................................................................................................................1911.0010010
..........................................................................................................................................................................................CG--AAACGTGCAGTTCGGA.................................................................................................................................................................................................................................1811.0010010
........................................................................................CTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................AACG--AAACGTGCAGTTCGGAA----------------GT..............................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................CGATGAAG------AGGAGAAGAA............1811.0010001
............................................................................................................................................................................AA-AAGTGAATAAACG--AAACGTGCA........................................................................................................................................................................................................................................2411.0010010
...........................................................................................................................................................G-TTTAAGCTTAAGTGCAA-AA..............................................................................................................................................................................................................................................................2011.0010010
..............................................................................................................................................................................................AAACGTGCAGTTCGGAA----------------A...............................................................................................................................................................................................................1811.0010010
.................................................................................................................................................TTC------CG-TTTAAGCTTAAGTGCAA-A...............................................................................................................................................................................................................................................................2311.0010010
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGTT--------GAAAA..........................................................................................................................................................................................2711.0010100
......................................................................................................................TAAATTTA-ATTAAGT----A-AAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................2711.0010010
....................................................................................................................................................................TTAAGTGCAA-AAGTGAATAAACG--.................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................GCAGTTCGGAA----------------GTGATAG.........................................................................................................................................................................................................1811.0010001
...........................................................................................GATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................CTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2211.0010100
..........................................................................................GGATGCCATACCGGATGAGAAAACG............................................................................................................................................................................................................................................................................................................................2511.0010010
....................................................................................................................................................................TTAAGTGCAA-AAGTGAATAAACG--AA...............................................................................................................................................................................................................................................2511.0010100
.....................................................................................................................................................................................................................................................................................................................C--ACAGATTTTG-TT--GCT-TG-CCCA--...........................................................................................2211.0010100
........................................................................................................................................................................................AACG--AAACGTGCAGTTCGGAA----------------AAA.............................................................................................................................................................................................................2411.0010010
.................................................................................................................CGAACTAAATTTA-ATTAAGT----.....................................................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................CTTAAGTGCAA-AAGTGAATAAAC....................................................................................................................................................................................................................................................2311.0010010
.................................................................................................................................................................................GTGAATAAACG--AAACGTGCAGTTCG...................................................................................................................................................................................................................................2511.0010100
.....................................................................................................................................................................TAAGTGCAA-AAGTGAATAAACG--AAA..............................................................................................................................................................................................................................................2511.0010010
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGTT--------...............................................................................................................................................................................................2211.0011000
.....................................................................................................................................................................................................CAGTTCGGAA----------------GTGATAGTT--------GAAAAA.........................................................................................................................................................................................2511.0011000
................................................................................................................................................................................................ACGTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2111.0010100
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................................GCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................1911.0011000
..............................................................................................................................................GTTTTC------CG-TTTAAGCTTAAGTGCAA-A...............................................................................................................................................................................................................................................................2611.0011000
...........................................................................................GATGCCATACCGGATGAGAAAACGA...........................................................................................................................................................................................................................................................................................................................2511.0010010
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2111.0010010
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGATAGTT--------GAA............................................................................................................................................................................................2611.0010100
.........................................................................................TGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................................................................TACCGGATGAGAAAACGAACTA.......................................................................................................................................................................................................................................................................................................................2211.0011000
..........................................................................................................................................A-AAGTTTTC------CG-TTTAAGCTT.........................................................................................................................................................................................................................................................................2011.0010010
...................................................................................................................................................................................GAATAAACG--AAACGTGCAGTTCGGAA----------------................................................................................................................................................................................................................2611.0010010
.................................................................................................................................................TTC------CG-TTTAAGCTTAAGTGCAA-AA..............................................................................................................................................................................................................................................................2411.0010010
..............................................................................................................................................................TTAAGCTTAAGTGCAA-AA..............................................................................................................................................................................................................................................................1811.0010010
...................................................................................................................................................................CTTAAGTGCAA-AAGTGAATAAACG--AA...............................................................................................................................................................................................................................................2611.0010100
..................................................................................................................................AAGT----A-AAGTTTTC------CG-TTTAAGC...........................................................................................................................................................................................................................................................................2211.0010100
.................................................................................................ATACCGGATGAGAAAACGAA..........................................................................................................................................................................................................................................................................................................................2011.0010010
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------AA..............................................................................................................................................................................................................1880.1310010
droYak3
-------------------------------------------------------------------------------TTGCAGGGTCTGGATGCCATACCGGATGAGAAAACAAACTAATTTTA-ATTAAGT----A-AAGTTTTC------CG-TCTAAGCTTAAGTGCAA-AAGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G-------------------AGTTTTTCCTGTAGTTCTTC--ACAGATTGGT-AT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTTTC--TATAGGGACTCGAGCAGATTCCCGATGAAG------AGGAGAAGAAGGAGGAAA---ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................GGATGCCATACCGGATGAGAAAACA............................................................................................................................................................................................................................................................................................................................2513.00300000030000
..........................................................................................GGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2113.00301000020000
........................................................................................CTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2212.00200010010000
................................................................................................CATACCGGATGAGAAAACAAACT........................................................................................................................................................................................................................................................................................................................2312.00200100010000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2412.00200000020000
..........................................................................................GGATGCCATACCGGATGAGAAA...............................................................................................................................................................................................................................................................................................................................2212.00200000020000
..................................................................................................TACCGGATGAGAAAACAAACT........................................................................................................................................................................................................................................................................................................................2112.00200000020000
.............................................................................................TGCCATACCGGATGAGAAAACA............................................................................................................................................................................................................................................................................................................................2211.00100000010000
........................................................................................CTGGATGCCATACCGGATGAGAAAA..............................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................................................G--AAACGTGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2611.00100000010000
.................................................................................................ATACCGGATGAGAAAACAAACT........................................................................................................................................................................................................................................................................................................................2211.00110000000000
..............................................................................................GCCATACCGGATGAGAAAA..............................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................GATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2211.00101000000000
...........................................................................................GATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................1811.00100100000000
........................................................................................................................................................................................AACG--AAACGTGCAGTTCGGAA----------------GTG.............................................................................................................................................................................................................2411.00100000010000
............................................................................................ATGCCATACCGGATGAGAAAACAAACTA.......................................................................................................................................................................................................................................................................................................................2811.00100000010000
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGTT--------GA.............................................................................................................................................................................................2411.00100000010000
.................................................................................................ATACCGGATGAGAAAACAAAC.........................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................GGATGAGAAAACAAACTAATTTTA-ATT.............................................................................................................................................................................................................................................................................................................2711.00100100000000
................................................................................................CATACCGGATGAGAAAACAAA..........................................................................................................................................................................................................................................................................................................................2111.00110000000000
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................2011.00101000000000
...................................................................................................ACCGGATGAGAAAACAAACT........................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................CTGGATGCCATACCGGATGA...................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................AAACGTGCAGTTCGGAA----------------GTGA............................................................................................................................................................................................................2111.00100000010000
.....................................................................................GGTCTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..........................................................................................GGATGCCATACCGGATGAGAAAA..............................................................................................................................................................................................................................................................................................................................2311.00100000010000
....................................................................................................................................GT----A-AAGTTTTC------CG-TCTAAGCC..........................................................................................................................................................................................................................................................................2111.00100100000000
.........................................................................................................................................................................................ACG--AAACGTGCAGTTCGGAA----------------GTGA............................................................................................................................................................................................................2411.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGATTCCCGATGAA.............................1911.00100000010000
.....................................................................................................................CTAATTTTA-ATTAAGT----A-AAGTT..............................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................TGCCATACCGGATGAGAAAACAAACT........................................................................................................................................................................................................................................................................................................................2611.00100100000000
................................................................................................CATACCGGATGAGAAAACAAACTA.......................................................................................................................................................................................................................................................................................................................2411.00101000000000
.........................................................................................TGGATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................GATGCCATACCGGATGAGAAAACAAA..........................................................................................................................................................................................................................................................................................................................2611.00100000010000
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATA..........................................................................................................................................................................................................1911.00100000010000
........................................................................................CTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................CG--AAACGTGCAGTTCGGAA----------------GT..............................................................................................................................................................................................................2111.00101000000000
..........................................................................................GGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GAAA...........................................................................................................................................................................................2511.00100000010000
..............................................................................................GCCATACCGGATGAGAAAACAAACTA.......................................................................................................................................................................................................................................................................................................................2611.00100000010000
........................................................................................CTGGATGCCATACCGGATGAGAAA...............................................................................................................................................................................................................................................................................................................................2411.00100100000000
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................ATAAACG--AAACGTGCAGTT.....................................................................................................................................................................................................................................1911.00100000010000
..............................................................................................GCCATACCGGATGAGAAAACAA...........................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................................................................................GATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................1911.00100010000000
.........................................................................................TGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................................TGGATGCCATACCGGATGAGAAA...............................................................................................................................................................................................................................................................................................................................2311.00100000010000
................................................................................................................................................................................AGTGAATAAACG--AAACGTGCAGTTCG...................................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................TAAGCTTAAGTGCAA-AAGTGAATAAAC....................................................................................................................................................................................................................................................2711.00100000010000
........................................................................................................................ATTTTA-ATTAAGT----A-AAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................2511.00100000010000
.........................................................................................TGGATGCCATACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................2511.00100010000000
............................................................................................ATGCCATACCGGATGAGAAAAC.............................................................................................................................................................................................................................................................................................................................2211.00100000010000
...................................................................................................................................................................................GAATAAACG--AAACGTGCAGTTCGGAA----------------GT..............................................................................................................................................................................................................2811.00100000010000
........................................................................................CTGGATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................................................................TTA-ATTAAGT----A-AAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................TTA-ATTAAGT----A-AAGTTTTC------CG-TCTA..............................................................................................................................................................................................................................................................................2511.00100000010000
....................................................................................................................................................................TTAAGTGCAA-AAGTGAATAAACG--AAA..............................................................................................................................................................................................................................................2611.00100000010000
........................................................................................................................................................................................AACG--AAACGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................2611.00101000000000
................................................................................................................................................TTTC------CG-TCTAAGCTTAAGTGCAA-AAGTG...........................................................................................................................................................................................................................................................2811.00100000010000
.....................................................................................................................CTAATTTTA-ATTAAGT----A-AAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................2811.00100000010000
....................................................................................................................................................................TTAAGTGCAA-AAGTGAATAAA.....................................................................................................................................................................................................................................................2111.00100010000000
...........................................................................................GATGCCATACCGGATGAGAAAACAAAC.........................................................................................................................................................................................................................................................................................................................2711.00100100000000
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGATAGT........................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................................................................................GAA----------------GTGATAGTT--------GAAAAA.........................................................................................................................................................................................18130.08100100000000
droEre2
A-A-----------------------------------------AGAG-----------------CCGTACCAATTTTCTTGCAGGGTCTGGATGCCATACCGGATGAGAAAACGAACTAATTTTA-ATTAAGT----A-GAGTTTTC------CG-TCTAAGCTTAAGTGCAA--AGTGAATAAACG--AAACGTGCAGTTCGGAA----------------GTGATAGTT--------GAAATGGTCGTC------------TTT---G-------------------AGTTTTTCCTGTAGTTCTCC--ACAGATTTGT-AT--GCT--GCCTCA--GGTGTAAAG----CT--T------CTTTTTC--TGTAGGGACTCGAACAAATTCCCGATGAAG------AGGAGAAGAAGGAGGAAA---ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................GATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................1912.0020001100
........................................................................................CTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2312.0021000010
............................................................................................................................................GAGTTTTC------CG-TCTAAGCTTAAGTGCA..................................................................................................................................................................................................................................................................2612.0022000000
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGTT--------...............................................................................................................................................................................................2212.0020000110
..........................................................................................GGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2012.0020001100
...........................................................................................................................................................................................G--AAACGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................2312.0020001100
............................................................................................ATGCCATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2712.0022000000
..............................................................................................................................................................CTAAGCTTAAGTGCAA--AGTGAATAAAC....................................................................................................................................................................................................................................................2712.0020000020
......................................................................................................................................................................AAGTGCAA--AGTGAATAAACG--.................................................................................................................................................................................................................................................2012.0020000020
....................................................................................................................................................................TTAAGTGCAA--AGTGAATAAACG--A................................................................................................................................................................................................................................................2311.0010001000
...............................................................................................................AACGAACTAATTTTA-ATTAAGT----A-GAGT...............................................................................................................................................................................................................................................................................................2711.0010000010
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGATAGTT--------T..............................................................................................................................................................................................2311.0010001000
................................................................................................................................................................AAGCTTAAGTGCAA--AGTGA..........................................................................................................................................................................................................................................................1911.0010001000
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGATAA.........................................................................................................................................................................................................2111.0010000010
.....................................................................................................................................................................TAAGTGCAA--AGTGAATAAA.....................................................................................................................................................................................................................................................1911.0010001000
..................................................................................................................................................................................TGAATAAACG--AAACGTGCAGT......................................................................................................................................................................................................................................2111.0010001000
...................................................................................................................................................................................GAATAAACG--AAACGTGCAGTTCGGAA----------------GT..............................................................................................................................................................................................................2811.0010000100
.................................................................................................................................................................................................CGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................1911.0010000010
...................................................................................................................................................................CTTAAGTGCAA--AGTGAATAAAC....................................................................................................................................................................................................................................................2211.0010001000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GC..............................................................................................................................................................................................................1811.0010100000
...................................................................................................ACCGGATGAGAAAACGAACTAAT.....................................................................................................................................................................................................................................................................................................................2311.0011000000
........................................................................................CTGGATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................2211.0010100000
..........................................................................................GGATGCCATACCGGATGAGAAAA..............................................................................................................................................................................................................................................................................................................................2311.0010000100
........................................................................................................................................................................................AACG--AAACGTGCAGTTCG...................................................................................................................................................................................................................................1811.0011000000
............................................................................................ATGCCATACCGGATGAGA.................................................................................................................................................................................................................................................................................................................................1811.0011000000
..................................................................................................TACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2111.0011000000
.................................................................................................................................................TTC------CG-TCTAAGCTTAAGTGCAA--AGT............................................................................................................................................................................................................................................................2511.0010001000
...............................................................................................................................ATTAAGT----A-GAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................1911.0010000010
..........................................................................................GGATGCCATACCGGATGAGAAA...............................................................................................................................................................................................................................................................................................................................2211.0010000100
...........................................................................................................................................................G-TCTAAGCTTAAGTGCAA--AGT............................................................................................................................................................................................................................................................2111.0010001000
........................................................................................CTGGATGCCATACCGGATGAGAAA...............................................................................................................................................................................................................................................................................................................................2411.0010000100
...................................................................................................................................................................CTTAAGTGCAA--AGTGAATAAA.....................................................................................................................................................................................................................................................2111.0010000010
...................................................................................................................................................................................GAATAAACG--AAACGTGCAGTTCGGA.................................................................................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................................................................................................................................................................GTAAAG----CT--T------CTTTTTC--TGTAGG....................................................2211.0010000010
......................................................................................................................................................................AAGTGCAA--AGTGAATAAACG--AAAC.............................................................................................................................................................................................................................................2411.0010100000
.......................................................................................................................................................................................AAACG--AAACGTGCAGTTCGGAA----------------GTGA............................................................................................................................................................................................................2611.0010000010
..................................................................................................................................AAGT----A-GAGTTTTC------CG-TCTAAGC...........................................................................................................................................................................................................................................................................2211.0010000100
...........................................................................................................................................................G-TCTAAGCTTAAGTGCAA--A..............................................................................................................................................................................................................................................................1911.0010000010
...........................................................................................................................................................G-TCTAAGCTTAAGTGCAA--AGTG...........................................................................................................................................................................................................................................................2211.0010001000
..........................................................................................................................................A-GAGTTTTC------CG-TCTAAGCTT.........................................................................................................................................................................................................................................................................2011.0011000000
..........................................................................................GGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2111.0010000100
.......................................................................................................................AATTTTA-ATTAAGT----A-GAGTTTTC------CG-T.................................................................................................................................................................................................................................................................................2611.0010000100
...................................................................................................................................................................................................TGCAGTTCGGAA----------------GTGATAGTT--------GA.............................................................................................................................................................................................2311.0010000100
..............................................................................................................................................GTTTTC------CG-TCTAAGCTTAAG......................................................................................................................................................................................................................................................................2011.0010000010
.........................................................................................................................................................................TGCAA--AGTGAATAAACG--AAACG............................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................TTTC------CG-TCTAAGCTTAAGTGCAA--AG.............................................................................................................................................................................................................................................................2511.0010001000
....................................................................................................................................GT----A-GAGTTTTC------CG-TCTAAGCTTA........................................................................................................................................................................................................................................................................2311.0011000000
...................................................................................................................................AGT----A-GAGTTTTC------CG-TCTAAGCT..........................................................................................................................................................................................................................................................................2211.0010000100
..................................................................................................................................AAGT----A-GAGTTTTC------CG-TCTAAGCTTA........................................................................................................................................................................................................................................................................2511.0010000100
.................................................................................................................................TAAGT----A-GAGTTTTC------CG-TCTAAGCT..........................................................................................................................................................................................................................................................................2411.0010100000
..................................................................................................................................................................................................GTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................1811.0010000010
..................................................................................................................................AAGT----A-GAGTTTTC------CG-TCTA..............................................................................................................................................................................................................................................................................1911.0010000010
........................................................................................................................................................................................................................................................................................................................................................................................................TCCCGATGAAG------AGGAGAAGAAGGAGGAA.....2811.0011000000
.......................................................................................TCTGGATGCCATACCGGATG....................................................................................................................................................................................................................................................................................................................................2011.0010001000
.................................................................................................ATACCGGATGAGAAAACGAACT........................................................................................................................................................................................................................................................................................................................2211.0010000100
............................................................................................................................................GAGTTTTC------CG-TCTAAGCTT.........................................................................................................................................................................................................................................................................1911.0011000000
..........................................................................................................................................................................GCAA--AGTGAATAAACG--AAACGTGCAGT......................................................................................................................................................................................................................................2711.0010100000
.....................................................................................GGTCTGGATGCCATACCGGATGAGAA................................................................................................................................................................................................................................................................................................................................2611.0010000100
..........................................................................................GGATGCCATACCGGATGAG..................................................................................................................................................................................................................................................................................................................................1911.0010000010
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------GTGAT...........................................................................................................................................................................................................2111.0010001000
........................................................................................................................ATTTTA-ATTAAGT----A-GAGTTTTC------CG-C.................................................................................................................................................................................................................................................................................2511.0010100000
......................................................................................................................................................................................................AGTTCGGAA----------------GTGATAGTT--------CT.............................................................................................................................................................................................2020.5010001000
...............................................................................................................................................................................................AACGTGCAGTTCGGAA----------------AA..............................................................................................................................................................................................................1880.1310000010

Generated: 05/17/2015 at 11:54 PM