ID:

dwi_81

 Coordinate:

scf2_1100000004540:1311958-1312026 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.1 -18.9 -18.9

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
A-richLow_complexityLow_complexity+

Sense Strand Reads

CGAGACGGCGGCGAGGCTGACAAATTTTTTTAGCATTTTATTTGTTAAGTTTAGTGACACTTTCTCTTAGATTGTATTATGTGAAATGAAATGCCAACGAGATTAATTGTGACTAAAGCTAACAAACGAAACAAATACAAGTACATATATACATATATAAACAAAGAAA

***********************************((((.(((((((..((((((.(((.((..((((.....(((((...........)))))....))))..)).))).))))))..))))))).))))..************************************ 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V118

embryo

 M045

female body

 V119

head

 V117

male body
................................................................................................ACGAGATTAATTGTGACTAAAG................................................... 22 0 1 177.00 177 162 6 7 2 0
................................................................................................ACGAGATTAATTGTGACTAA..................................................... 20 0 1 14.00 14 13 0 1 0 0
................................................................................................ACGAGATTAATTGTGACTAAA.................................................... 21 0 1 11.00 11 9 1 1 0 0
..................................................TTAGTGACACTTTCTCTTAGATTG............................................................................................... 24 0 1 8.00 8 8 0 0 0 0
..................................................TTAGTGACACTTTCTCTTAGATT................................................................................................ 23 0 1 6.00 6 3 2 0 1 0
................................................................................................ACGAGATTAATTGTGACTA...................................................... 19 0 1 6.00 6 6 0 0 0 0
................................................................................................ACGAGATTAATTGTGACTAAGG................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................TTAGTGACACTTTCTCTTAGAT................................................................................................. 22 0 1 4.00 4 3 0 1 0 0
................................................................................................ACGAGATTAATTGTGACTAAAGC.................................................. 23 0 1 4.00 4 3 1 0 0 0
................................................................................................ACGAGATTAATTGTGACT....................................................... 18 0 1 3.00 3 3 0 0 0 0
........................................................................................AAATGCCAACGAGATTAATTGT........................................................... 22 0 1 3.00 3 0 1 0 2 0
.................................................................CTTAGATTGTATTATGTGAAATGAAAT............................................................................. 27 0 1 2.00 2 0 2 0 0 0
.........................................................................................AATGCCAACGAGATTAATTGT........................................................... 21 0 1 2.00 2 0 2 0 0 0
....................................................................................................GATTAATTGTGACTAAAGCT................................................. 20 0 1 2.00 2 1 1 0 0 0
..................................................TTATTGACACTTTCTCTTAGATTG............................................................................................... 24 1 1 2.00 2 2 0 0 0 0
................................................................................................ACGAGATTAATTGTGACTAAAGT.................................................. 23 1 1 2.00 2 0 1 1 0 0
......................................................................................................TTAATTGTGACTAAAGCTAAC.............................................. 21 0 1 2.00 2 1 1 0 0 0
................................................................................................ACGAGATTAATTGTGACTAAAC................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................GCCAACGAGATTAATTGTGACT....................................................... 22 0 1 1.00 1 0 0 1 0 0
..............................................................................ATGTGAAATGAAATGCCAACGAG.................................................................... 23 0 1 1.00 1 0 1 0 0 0
................................................................................................ACGAGATTAATTGAGACTAAAG................................................... 22 1 1 1.00 1 1 0 0 0 0
....................................................AGTGACACTTTCTCTTAGATTGTAT............................................................................................ 25 0 1 1.00 1 0 0 1 0 0
............................................................................................GCCAACGAGATTAATTGT........................................................... 18 0 1 1.00 1 0 1 0 0 0
................................................................................................ACGAGATTAATTGTGACC....................................................... 18 1 1 1.00 1 1 0 0 0 0
...................................................................................................AGATTAATTGTGACTAAAG................................................... 19 0 1 1.00 1 1 0 0 0 0
................................................................................................ACGAGATTAATGGTGACTAAAG................................................... 22 1 1 1.00 1 0 0 1 0 0
............................................................................TTATGTGAAATGAAATGCCAACGA..................................................................... 24 0 1 1.00 1 0 1 0 0 0
..................................................TTAGTGAAACTTTCTCTTAGAT................................................................................................. 22 1 1 1.00 1 0 0 0 1 0
....................................................AGTGACACTTTCTCTTAGATTG............................................................................................... 22 0 1 1.00 1 1 0 0 0 0
......................................................................................................TTAATTGTGACTAAAGCTAACA............................................. 22 0 1 1.00 1 0 1 0 0 0
...........................................................................................TGCCAACGAGATTAATTGTG.......................................................... 20 0 1 1.00 1 0 1 0 0 0
...............................................................CTCTTAGATTGTATTATGTGAA.................................................................................... 22 0 1 1.00 1 0 0 0 0 1
...........................................................................................TGCCAACGAGATTAATTGT........................................................... 19 0 1 1.00 1 0 1 0 0 0
................................................................................................ACGAGATTAATTGTGGCTAAAG................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................................CTTAGATTGTATTATGTGA..................................................................................... 19 0 1 1.00 1 0 1 0 0 0
...............................................................CTCTTAGATTGTATTATGTGA..................................................................................... 21 0 1 1.00 1 0 0 0 0 1
....................................................AGTGACACTTTCTCTTAGATTGTA............................................................................................. 24 0 1 1.00 1 0 0 1 0 0
...............................................................CTCTTAGATTGTATTATGTGAAATGAA............................................................................... 27 0 1 1.00 1 0 0 0 0 1
.....................................TTATTTGTTAAGTTTAGTGACACTTTCT........................................................................................................ 28 0 1 1.00 1 0 1 0 0 0
......................................................................................TGAAATGCCAACGAGATTAATTGT........................................................... 24 0 1 1.00 1 0 1 0 0 0
.................................................TTTAGTGACACTTTCTCTTAGAT................................................................................................. 23 0 1 1.00 1 0 0 0 1 0
.................................................................................................CGAGATTAATTGTGACTAAA.................................................... 20 0 1 1.00 1 0 0 1 0 0
CGAGACGGCGGCGAGGCTGACA................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0
................................................................................................ACGAGATTAATTGTGACTAAAGA.................................................. 23 1 1 1.00 1 1 0 0 0 0
....................................................................AGATTGTATTATGTAAAATGAAAT............................................................................. 24 1 1 1.00 1 0 1 0 0 0
.................................................................CTTAGATTGTATTATGTGAAATGAAATGC........................................................................... 29 0 1 1.00 1 0 0 0 0 1
..............................................................................................CAACGAGATTAATTGTGACTAAAG................................................... 24 0 1 1.00 1 1 0 0 0 0
.........................................................................................................ATCGTGACTAAAGCTAACA............................................. 19 1 2 0.50 1 0 1 0 0 0
...................................TTTTAGTTGTTAAGTTGAGTG................................................................................................................. 21 2 7 0.14 1 0 0 0 0 1

Anti-sense strand reads

GCTCTGCCGCCGCTCCGACTGTTTAAAAAAATCGTAAAATAAACAATTCAAATCACTGTGAAAGAGAATCTAACATAATACACTTTACTTTACGGTTGCTCTAATTAACACTGATTTCGATTGTTTGCTTTGTTTATGTTCATGTATATATGTATATATTTGTTTCTTT

************************************((((.(((((((..((((((.(((.((..((((.....(((((...........)))))....))))..)).))).))))))..))))))).))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V119

head
....TGCCGCCGGTCCGAGCGTT.................................................................................................................................................. 19 3 4 0.25 1 1 0
....................................................................................................................................................TATGTATCTATTGGTTTCT.. 19 2 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004540:1311908-1312076 + dwi_81 confident -----CGAG-ACGGCGGCGAGGCTGAC-A-AA-TTTTTTTAGCATTTTATTTGTTAAGTTTAGTGACACTTTCT--CTTAGATTGTATTATGTGA-AATG--AA-----ATGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACGAAA--CAA-----A-------------TACAAGTAC--ATATATA-------------------CATATATA---AACAAAGAAA
droVir3 scaffold_13049:7754231-7754384 - -----------CGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACATTTTTT--CTTAGATTGTATTTTGTGAAGAGC---AA-GTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--TTATAT-------------------------------------------TTATTTTATATATA--TATA-TAT-------
droMoj3 scaffold_6680:6000941-6001116 - -----------CGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACATTT-TT--CTTAGATTGTATT-TGTGA-GAGATGCGA-GCGAAGCCAACGAGATTAATTGTGACTAAAATTA------------ACAAACAAAA--TCATAT----TTATTTTAAAAACATA--TAT--CAA-------TG-----------ATATATA--TGTATCACAAAG---
droGri2 scaffold_15110:5128834-5128987 + -----TG-GTTCGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACAATTTTTTGCATAGATTGTAC----C----------AAGTTGAAGCCAACGAGATTATGTGTGACTAAAGCAA------------ACAAACAAAA--TTA-------------------TAAAT-TAT------------------TTATTTT---TTTATATA---AATA------
dp5 XR_group6:3178374-3178487 - -----------------CGCGGCTGAC----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GCAA-AAGA---AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAAC--------------------------------------------------------------------------------------
droPer2 scaffold_9:1472985-1473098 - -----------------CGCGGCTGAC----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GCAA-AAGA---AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAAC--------------------------------------------------------------------------------------
droAna3 scaffold_13337:1258773-1258936 + -----------CGGCGGCGAGGCTGAA----C--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------T-CAA--AC--GCATACACCATGTAATTTATTTTATATATA--TATA---CA------
droBip1 scf7180000396371:1591343-1591515 + -----------CGGCGGCGAGGCTGAA---AC--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAAACAA-----ATCAAA--CAAA--CACA----------TACACCATGTAATTTATTTTATATATA--TATA-CACA------
droKik1 scf7180000302686:95001-95136 + -----------CGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACATTTTCT--CCTAGATCGTATC--GCAACGCAA---AA-AGAAAGCCAACGAGATTAATTGTGACTAAAGCTAAATAACAAACAAACAAACAAA-----------------------------------------------------------------------------------
droFic1 scf7180000453839:648516-648658 + -----------CGGCGGCGAGGCTGAA---AA--AATTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------CACAACAACACCCACACA--------------------------------CA------
droEle1 scf7180000491255:759133-759268 - -----CAAGTTCGACGGCGAGGCTGAA----ACTTTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAC----AA-------------CACAA-----------------------------------------------------
droRho1 scf7180000767448:22855-22997 + -----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTTTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------CACAA-CAT--CCA--CA--------------------------------CA------
droBia1 scf7180000302428:4667239-4667370 - -----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAAACAA-----A---------------------------------------------------------------CA------
droTak1 scf7180000415703:291690-291815 + -----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTTTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--AA------------------------------------------------------------------------------
droEug1 scf7180000409466:4488824-4488963 - TTGAACAAGTTCGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCATATT-TGC----------AATTTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------AACAA-----------------------------------------------------
dm3 chr3L:12396058-12396213 - dme_427 candidate-rescued T-GAGCAAGTTCGGCGGCGAGGCTGAAGAAAA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTCCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAACAAAA--CAAAACCAA-------------CACAA-TAC--CCAT--A--------------------------------CA------
droSim2 3l:12096643-12096775 - T-GAGCAAGTTCGGCGGCGAGGCTGAA---AA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAACAAAA--CAA-----A-----------------------------------------------------------------------
droSec2 scaffold_0:4580052-4580175 - T-GAGCAAGTTCGGCGGCGAGGCTGAA---AA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAA---------------------------------------------------------------------------------------
droYak3 3L:12451772-12451920 - dya_1642 ---AGCAAGTTCGGCGGCGAGGCTGAA---AA--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAA-CCA-----A-------------CACAA-TAC--CCATACA--------------------------------CA------
droEre2 scaffold_4784:12390945-12391090 - ---AGCAAGTTCGGCGGCGAGGCTGAA----A--ATTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CCA-----A-------------CACAA-TAC--CCATACA--------------------------------C-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
-----CGAG-ACGGCGGCGAGGCTGAC-A-AA-TTTTTTTAGCATTTTATTTGTTAAGTTTAGTGACACTTTCT--CTTAGATTGTATTATGTGA-AATG--AA-----ATGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACGAAA--CAA-----A-------------TACAAGTAC--ATATATA-------------------CATATATA---AACAAAGAAASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................ACGAGATTAATTGTGACTAAAG...........................................................................................................221177.001771627062
...................................................................................................................ACGAGATTAATTGTGACTAA.............................................................................................................20114.0014131000
...................................................................................................................ACGAGATTAATTGTGACTAAA............................................................................................................21111.001191010
...........................................................TTAGTGACACTTTCT--CTTAGATTG...............................................................................................................................................................2418.00880000
...........................................................TTAGTGACACTTTCT--CTTAGATT................................................................................................................................................................2316.00630021
...................................................................................................................ACGAGATTAATTGTGACTA..............................................................................................................1916.00660000
...........................................................TTAGTGACACTTTCT--CTTAGAT.................................................................................................................................................................2214.00431000
...................................................................................................................ACGAGATTAATTGTGACTAAAGC..........................................................................................................2314.00430010
...................................................................................................................ACGAGATTAATTGTGACT...............................................................................................................1813.00330000
......................................................................................................AA-----ATGCCAACGAGATTAATTGT...................................................................................................................2213.00300012
............................................................................CTTAGATTGTATTATGTGA-AATG--AA-----AT.....................................................................................................................................2712.00200020
.......................................................................................................A-----ATGCCAACGAGATTAATTGT...................................................................................................................2112.00200020
.......................................................................................................................GATTAATTGTGACTAAAGCT.........................................................................................................2012.00210010
...................................................................................................................ACGAGATTAATTGTGACTAAAGT..........................................................................................................2312.00201010
.........................................................................................................................TTAATTGTGACTAAAGCTA------------AC..........................................................................................2112.00210010
...................................................................................................................ACGAGATTAATTGTGACTAAAC...........................................................................................................2211.00110000
...............................................................................................................GCCAACGAGATTAATTGTGACT...............................................................................................................2211.00101000
.........................................................................................ATGTGA-AATG--AA-----ATGCCAACGAG............................................................................................................................2311.00100010
.............................................................AGTGACACTTTCT--CTTAGATTGTAT............................................................................................................................................................2511.00101000
...............................................................................................................GCCAACGAGATTAATTGT...................................................................................................................1811.00100010
...................................................................................................................ACGAGATTAATTGTGACC...............................................................................................................1811.00110000
......................................................................................................................AGATTAATTGTGACTAAAG...........................................................................................................1911.00110000
.......................................................................................TTATGTGA-AATG--AA-----ATGCCAACGA.............................................................................................................................2411.00100010
.............................................................AGTGACACTTTCT--CTTAGATTG...............................................................................................................................................................2211.00110000
.........................................................................................................................TTAATTGTGACTAAAGCTA------------ACA.........................................................................................2211.00100010
..............................................................................................................TGCCAACGAGATTAATTGTG..................................................................................................................2011.00100010
........................................................................CT--CTTAGATTGTATTATGTGA-A...................................................................................................................................................2211.00100100
..............................................................................................................TGCCAACGAGATTAATTGT...................................................................................................................1911.00100010
............................................................................CTTAGATTGTATTATGTGA-....................................................................................................................................................1911.00100010
........................................................................CT--CTTAGATTGTATTATGTGA-....................................................................................................................................................2111.00100100
.............................................................AGTGACACTTTCT--CTTAGATTGTA.............................................................................................................................................................2411.00101000
........................................................................CT--CTTAGATTGTATTATGTGA-AATG--AA-----.......................................................................................................................................2711.00100100
..............................................TTATTTGTTAAGTTTAGTGACACTTTCT--........................................................................................................................................................................2811.00100010
..................................................................................................TG--AA-----ATGCCAACGAGATTAATTGT...................................................................................................................2411.00100010
..........................................................TTTAGTGACACTTTCT--CTTAGAT.................................................................................................................................................................2311.00100001
....................................................................................................................CGAGATTAATTGTGACTAAA............................................................................................................2011.00101000
.....CGAG-ACGGCGGCGAGGCTGAC-A-......................................................................................................................................................................................................................2211.00101000
...................................................................................................................ACGAGATTAATTGTGACTAAAGA..........................................................................................................2311.00110000
............................................................................CTTAGATTGTATTATGTGA-AATG--AA-----ATGC...................................................................................................................................2911.00100100
.................................................................................................................CAACGAGATTAATTGTGACTAAAG...........................................................................................................2411.00110000
droVir3
-----------CGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACATTTTTT--CTTAGATTGTATTTTGTGAAGAGC---AA-GTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--TTATAT-------------------------------------------TTATTTTATATATA--TATA-TAT-------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................ACGAGATTAATTGTGACTAAAG...........................................................................................................22115.00150000000000000000000000000000000000000000001000011000000000000000010132201000110
............................................................................CTTAGATTGTATTTTGTGAAGAGC---.............................................................................................................................................2414.0040001000000000000000000000000000000000000000000000000000000010200000000000000000
............................................................................................TGAAGAGC---AA-GTGAAGCCAACGAGA...........................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000004000000000
...................................................................................................................ACGAGATTAATTGTGACTAAA............................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000010000000110
.....................................................TTAAGTTTAGTGACATTTTTT--CTTAGA..................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000002000000000000000
...........................................................................................................TGAAGCCAACGAGATTAATTGTGACT...............................................................................................................2612.0020010000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................................................TTAGATTGTATTTTGTGAAGAGC---AA-GT........................................................................................................................................2712.0020000002000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TTTATTTGTTAAGTTTAGTGACATTT.............................................................................................................................................................................2612.0020000000000000000000000000020000000000000000000000000000000000000000000000000000
..................................................................................TTGTATTTTGTGAAGAGC---AA-GTG.......................................................................................................................................2312.0020000002000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TAGCATTTTATTTGTTAAGTTTAGTGA..................................................................................................................................................................................2712.0020000000000000000000000000010000000000000000000000000000000000001000000000000000
..............................................................................................................................TGTGACTAAAGCTA------------ACAAACAAAA--TT..............................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AACGAGATTAATTGTGACT...............................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AA-GTGAAGCCAACGAGATTAATTGTGAC................................................................................................................2811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TAATTGTGACTAAAGCTA------------ACAAACAAAA--................................................................................2811.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................CATTTTTT--CTTAGATTGTATTTTGT.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................CAACGAGATTAATTGTGACTAAAGC..........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000010000000000000
.............................................................AGTGACATTTTTT--CTTAGATTGT..............................................................................................................................................................2311.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GCCAACGAGATTAATTGTGACTAAAGCTA------------............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000010000000000000
.................................................................................................................................GACTAAAGCTA------------ACAAACAAAA--TTATAT-------------------------------------------TT.............................2911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TTAGTGACATTTTTT--CTTAGATTGTA.............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
.......................................................AAGTTTAGTGACATTTTTT--CT......................................................................................................................................................................2111.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
................................................................................................................CCAACGAGATTAATTGTGACT...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................ATTTTGTGAAGAGC---AA-GTGAAGCCAACGA.............................................................................................................................2911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AAAGCTA------------ACAAACAAAA--TTATAT-------------------------------------------...............................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................AA-GTGAAGCCAACGAGATTAATTGTGACT...............................................................................................................2911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGTGACTAAAGCTA------------ACAAACAAAA--TTA.............................................................................2711.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................ACGAGATTAATTGTGACTAAAGT..........................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................TAGATTGTATTTTGTGAAGAGC---AA-GTG.......................................................................................................................................2711.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................ACGAGATTAATTGTGACTAA.............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................AACGAGATTAATTGTGACTAAAGCTA------------AC..........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................................................................ACGAGATTAATTGTGAC................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000010000
........................................................................................TTTGTGAAGAGC---AA-GTGAAGCC..................................................................................................................................2211.0010000000000000000000000000000000000000000001000000000000000000000000000000000000
..............CGGCGAGGCTGAA----A--TTTTGTAGCA........................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................................................CAACGAGATTAATTGTGACTAAAGCTA------------AC..........................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000010000000000000
.........................................................................................................................TTAATTGTGACTAAAGCTA------------ACAAACAAA...................................................................................2811.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
.........................................................................................TTGTGAAGAGC---AA-GTGAAGC...................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CTTAGATTGTATTTTGTGAAG...................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................GAAGCCAACGAGATTAATTGT...................................................................................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.......................................................................................TTTTGTGAAGAGC---AA-GTGAAGCCAAC...............................................................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GATTAATTGTGACTAAAGCTA------------AC..........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................TTTTT--CTTAGATTGTATTTTGTGAAG...................................................................................................................................................2611.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................TTTGTTAAGTTTAGTGACA................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................GTTTAGTGACATTTTTT--CTTAGATTG...............................................................................................................................................................2611.0010000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................CAACGAGATTAATTGTGACTAAAGCT.........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................TAATTGTGACTAAAGCTA------------ACAAACAAAA--T...............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
..........................................................TTTAGTGACATTTTTT--CTTAGATTGTA.............................................................................................................................................................2711.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
......................................................TAAGTTTAGTGACATTTTTT--CTTAGA..................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................................................................................................CGAGATTAATTGTGACTAAAGC..........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
.........................................................................T--CTTAGATTGTATTTTGTGAAGAGC---.............................................................................................................................................2511.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................TTT--CTTAGATTGTATTTTGTGAAGAGC---.............................................................................................................................................2711.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................AACGAGATTAATTGTGACTAAAGCTA------------............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................TA------------ACAAACAAAA--TTATAT-------------------------------------------TTATTTT........................2511.0010000000000000000000000000000000000000000000000000000000000000000100000000000000
............................................................................................TGAAGAGC---AA-GTGAAGCCAACGAGAT..........................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................................................GTATTTTGTGAAGAGC---AA-GT........................................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TTGTGAAGAGC---AA-GTGAA.....................................................................................................................................1811.0010000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................TTAGTGACATTTTTT--CTTAGATTG...............................................................................................................................................................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................TT--CTTAGATTGTATTTTGTGAAGAGC---.............................................................................................................................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................ATTTTTT--CTTAGATTGTAT............................................................................................................................................................1911.0010000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................AGATTGTATTTTGTGAAGAGC---AA-GT........................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
............................................................................................................................ATTGTGACTAAAGCTA------------ACAAAC......................................................................................2211.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................AATTGTGACTAAAGCTA------------ACAAACA.....................................................................................2411.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................GCCAACGAGATTAATTGTGACTA..............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
droMoj3
-----------CGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACATTT-TT--CTTAGATTGTATT-TGTGA-GAGATGCGA-GCGAAGCCAACGAGATTAATTGTGACTAAAATTA------------ACAAACAAAA--TCATAT----TTATTTTAAAAACATA--TAT--CAA-------TG-----------ATATATA--TGTATCACAAAG---SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................TAGATTGTATT-TGTGA-GAGAT...............................................................................................................................................2111.001000001
..................................................................................................GATGCGA-GCGAAGCCAACGAGATTAATT.....................................................................................................................2811.001000001
............................................................................................................................ATTGTGACTAAAATTA------------ACA.........................................................................................1911.001100000
.......................................................AAGTTTAGTGACATTT-TT--CTTAGATTGT..............................................................................................................................................................2811.001100000
.............................................................AGTGACATTT-TT--CTTAGATTGTA.............................................................................................................................................................2311.001100000
droGri2
-----TG-GTTCGACGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTGACAATTTTTTGCATAGATTGTAC----C----------AAGTTGAAGCCAACGAGATTATGTGTGACTAAAGCAA------------ACAAACAAAA--TTA-------------------TAAAT-TAT------------------TTATTTT---TTTATATA---AATA------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................AGTTTAGTGACAATTTTTTGCATAGATT................................................................................................................................................................2811.00110
dp5
-----------------CGCGGCTGAC----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GCAA-AAGA---AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAAC--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..................................TTTTGTAGCATTTTATTTGTTAAGTT........................................................................................................................................................................................2616.0060000000600
..............................................................GTAACACTTTCT--CTTAGATC................................................................................................................................................................2012.0020200000000
.......................TGAC----A--TTTTGTAGCATTTTATTTGT..............................................................................................................................................................................................2512.0020000000200
...........................................................................................................TGAAGCCAACGAGATTAATTGTGACT...............................................................................................................2612.0020200000000
...................................................................................................................ACGAGATTAATTGTGACTAAAGC..........................................................................................................2311.0010100000000
......................................................................................ATT--GCAA-AAGA---AA-ATGAAGCCAA................................................................................................................................2311.0010100000000
................................................................................GATCGTATT--GCAA-AAGA---AA-ATGAAGCC..................................................................................................................................2711.0010100000000
............................................................................CTTAGATCGTATT--GCAA-AAGA---.............................................................................................................................................2111.0010100000000
..................................................................................................................AACGAGATTAATTGTGACT...............................................................................................................1911.0010010000000
...................................................................................................................ACGAGATTAATTGTGACTAAAGCTA------------ACA.........................................................................................2811.0010100000000
....................................................................................GTATT--GCAA-AAGA---AA-ATGAAGC...................................................................................................................................2211.0010100000000
....................................................................................GTATT--GCAA-AAGA---AA-ATGAA.....................................................................................................................................2011.0010100000000
..................................................................................................................AACGAGATTAATTGTGACTAAAG...........................................................................................................2311.0010100000000
......................................................................................ATT--GCAA-AAGA---AA-ATGAAGCCAACGA.............................................................................................................................2611.0010100000000
............................................................................................CAA-AAGA---AA-ATGAAGCCAACG..............................................................................................................................2111.0010100000000
.......................................................................................................................GATTAATTGTGACTAAAGC..........................................................................................................1911.0010000100000
.................................................................ACACTTTCT--CTTAGATCGTATT--GCA......................................................................................................................................................2511.0010000010000
.....................................................................................TATT--GCAA-AAGA---AA-ATGAAGCC..................................................................................................................................2211.0010100000000
.............................................................................................................................TTGTGACTAAAGCTA------------ACA.........................................................................................1811.0010100000000
.................CGCGGCTGAC----A--TTTTGTAGC.........................................................................................................................................................................................................2011.0010000100000
droPer2
-----------------CGCGGCTGAC----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GCAA-AAGA---AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAAC--------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................GATTAATTGTGACTAAAGCT.........................................................................................................2016.006600000
............................................................................................................................ATTGTGACTAAAGCTA------------ACA.........................................................................................1913.003300000
...............................................................................................................GCCAACGAGATTAATTGT...................................................................................................................1812.002002000
........................................................................................................................ATTAATTGTGACTAAAGCT.........................................................................................................1912.002200000
..........................................................................................................ATGAAGCCAACGAGATTAATT.....................................................................................................................2111.001001000
....................................................................................................................CGAGATTAATTGTGACTA..............................................................................................................1811.001100000
............................................................TAGTAACACTTTCT--CTTAGATCGTATT--GC.......................................................................................................................................................2911.001100000
........................................................................CT--CTTAGATCGTATT--GCAA-AAG.................................................................................................................................................2211.001100000
............................................................TAGTAACACTTTCT--CTTAGATCGT..............................................................................................................................................................2411.001100000
................................................................AACACTTTCT--CTTAGATCGT..............................................................................................................................................................2011.001100000
...............................................................TAACACTTTCT--CTTAGATCGTATT--GCA......................................................................................................................................................2711.001010000
.............................................................AGTAACACTTTCT--CTTAGATCGT..............................................................................................................................................................2311.001100000
.................................................................................................AGA---AA-ATGAAGCCAACGAGATTAAT......................................................................................................................2511.001001000
droAna3
-----------CGGCGGCGAGGCTGAA----C--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------T-CAA--AC--GCATACACCATGTAATTTATTTTATATATA--TATA---CA------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.............................................................AGTAACACTTTCT--CTTAGATCGTATT--GC----------.............................................................................................................................................2811.001010000
..........................................................TTTAGTAACACTTTCT--CTTAGAT.................................................................................................................................................................2311.001000001
............................................................TAGTAACACTTTCT--CTTAGAT.................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................AA--AC--GCATACACCATGTAATT..............................2111.001010000
............................................................................CTTAGATCGTATT--GC----------AA-ATGAAGC...................................................................................................................................2411.001010000
....................................................................................................................CGAGATTAATTGTGACTAAAGC..........................................................................................................2221.002110000
...........................................................TTAGTAACACTTTCT--CTTAGATCGT..............................................................................................................................................................2511.001100000
............................................................................................................................ATTGTGACTAAAGCTA------------ACA.........................................................................................1921.002000002
...............GGCGAGGCTGAA----C--TTTTGTAGC.........................................................................................................................................................................................................2220.501010000
.....................................................................................................................GAGATTAATTGTGACTAAAGCT.........................................................................................................2220.501000100
.......................................................................................................AA-ATGAAGCCAACGAGATTAATTGTGA.................................................................................................................2720.501100000
.......................................................................................................................GATTAATTGTGACTAAAGCTA------------AC..........................................................................................2320.501000010
.....................................................TTAAGTTTAGTAACACTTTCT--CTC.....................................................................................................................................................................2420.501010000
................GCGAGGCTGAA----C--TTTTGTAGC.........................................................................................................................................................................................................2120.501000001
...................................................................................................................ACGAGATTAATTGTGACTAAAGC..........................................................................................................2320.501010000
.......................................................................................................................GATTAATTGTGACTAAAGCT.........................................................................................................2020.501000010
droBip1
-----------CGGCGGCGAGGCTGAA---AC--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-ATGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAAACAA-----ATCAAA--CAAA--CACA----------TACACCATGTAATTTATTTTATATATA--TATA-CACA------SizeHit CountTotal NormTotal
No Reads
droKik1
-----------CGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACATTTTCT--CCTAGATCGTATC--GCAACGCAA---AA-AGAAAGCCAACGAGATTAATTGTGACTAAAGCTAAATAACAAACAAACAAACAAA-----------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-----------CGGCGGCGAGGCTGAA---AA--AATTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------CACAACAACACCCACACA--------------------------------CA------SizeHit CountTotal NormTotal
No Reads
droEle1
-----CAAGTTCGACGGCGAGGCTGAA----ACTTTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAC----AA-------------CACAA-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTTTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------CACAA-CAT--CCA--CA--------------------------------CA------SizeHit CountTotal NormTotal
No Reads
droBia1
-----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAAACAA-----A---------------------------------------------------------------CA------SizeHit CountTotal NormTotal
No Reads
droTak1
-----CAAGTTCGGCGGCGAGGCTGAA----A--TTTTTTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--AA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TTGAACAAGTTCGGCGGCGAGGCTGAA----A--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCATATT-TGC----------AATTTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CAA-----A-------------AACAA-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
T-GAGCAAGTTCGGCGGCGAGGCTGAAGAAAA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTCCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAACAAAA--CAAAACCAA-------------CACAA-TAC--CCAT--A--------------------------------CA------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................GAGGCTGAAGAAAA--CTTTGTAGCATTT.....................................................................................................................................................................................................27142.00420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000001000000067501800000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAGGCTGAAGAAAA--CTTTGTAGCATT......................................................................................................................................................................................................26136.00360000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030102900010000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAGGCTGAAGAAAA--CTTTGTAGC.........................................................................................................................................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002006900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................GCGAGGCTGAAGAAAA--CTTTG.............................................................................................................................................................................................................21114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001009400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................GCCAACGAGATTAATTGTGACGAAAGC..........................................................................................................2718.008000000000000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
.......................................................................................................................GATTAATTGTGACGAAAGCTA------------AC..........................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
......................................................................TCCT--CTTAGATCGTATT--GC----------AA-TTGAAGC...................................................................................................................................2815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
...............GGCGAGGCTGAAGAAAA--CTTTGT............................................................................................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000002000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTAATTGTGACGAAAGCTA------------ACAAA.......................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTAATTGTGACGAAAGCTA------------ACAAACAAA...................................................................................2814.004000000000000000000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................T--CTTAGATCGTATT--GC----------AA-TTGAAGC...................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................GATTAATTGTGACGAAAGC..........................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................TCCT--CTTAGATCGTATT--GC----------AA-TTGAA.....................................................................................................................................2614.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................TTTAGTAACACTTCCT--CTTAGATCG...............................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................TTTAGTAACACTTCCT--CTTAGATCGTA.............................................................................................................................................................2713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................CCAACGAGATTAATTGTGACGAAAGC..........................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................TAACACTTCCT--CTTAGATCGTATT--GC----------.............................................................................................................................................2613.003000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TTAGTAACACTTCCT--CTTAGATCGTA.............................................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................CT--CTTAGATCGTATT--GC----------AA-TTGAAGC...................................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TT--GC----------AA-TTGAAGCCAACGAGATTAAT......................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.....................GCTGAAGAAAA--CTTTGTAGC.........................................................................................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAGGCTGAAGAAAA--CTTTGTAGCAT.......................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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T-GAGCAAGTTCGGCGGCGAGGCTGAAGA.......................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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T-GAGCAAGTTCGGCGGCGAG...............................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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T-GAGCAAGTTCGGCGGCGAGGCTGAAG........................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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droSim2
T-GAGCAAGTTCGGCGGCGAGGCTGAA---AA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAACAAAA--CAA-----A-----------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................CT--CTTAGATCGTATT--GC----------AA-TTGAAGCC..................................................................................................................................2713.00301200000000000000
..............................................................................................................................TGTGACGAAAGCTA------------ACAAACAAAA--CA..............................................................................2613.00300000010011000000
................................................................AACACTTTCT--CTTAGATCGT..............................................................................................................................................................2012.00200200000000000000
..............................................................................................................AGCCAACGAGATTAATTGT...................................................................................................................1911.00100000000000100000
.................................................................................................................CAACGAGATTAATTGTGAC................................................................................................................1911.00101000000000000000
...........CGGCGGCGAGGCTGAA---AA--CTTTGT............................................................................................................................................................................................................2411.00100100000000000000
..................................................................................TCGTATT--GC----------AA-TTGAAGCCAACGAGA...........................................................................................................................2611.00100000010000000000
........................................................................CT--CTTAGATCGTATT--GC----------AA-TTGA......................................................................................................................................2311.00101000000000000000
..............CGGCGAGGCTGAA---AA--CTTTG.............................................................................................................................................................................................................2011.00110000000000000000
.............................................................................TTAGATCGTATT--GC----------AA-TTGAAGCCAAC...............................................................................................................................2711.00100000000000010000
........................................................................................................................ATTAATTGTGACGAAAGC..........................................................................................................1811.00110000000000000000
.......................................................................TCT--CTTAGATCGTATT--GC----------AA-TTGAAGCC..................................................................................................................................2811.00100100000000000000
......................................................................................ATT--GC----------AA-TTGAAGCCAACGA.............................................................................................................................2011.00100010000000000000
..........................................................................................................TTGAAGCCAACGAGATTAATTGTGAC................................................................................................................2611.00110000000000000000
..............................................................................................................................TGTGACGAAAGCTA------------ACA.........................................................................................1711.00100000000001000000
............................................................TAGTAACACTTTCT--CTTAGATCGTATT--GC----------.............................................................................................................................................2911.00101000000000000000
.......AGTTCGGCGGCGAGGCTGA..........................................................................................................................................................................................................................1911.00100000000001000000
.............................................................................TTAGATCGTATT--GC----------AA-TTGAAGCCAA................................................................................................................................2611.00100000010000000000
.......................................................................TCT--CTTAGATCGTATT--GC----------AA-T.........................................................................................................................................2111.00100000010000000000
...AGCAAGTTCGGCGGCGAGGC.............................................................................................................................................................................................................................2011.00100000000001000000
............................................................TAGTAACACTTTCT--CTTAGATCGTAT............................................................................................................................................................2611.00100000000001000000
...........................................................................................................TGAAGCCAACGAGATTAATTGTGA.................................................................................................................2411.00100000010000000000
.....................................................................TTTCT--CTTAGATCGTATT--GC----------AA-T.........................................................................................................................................2311.00100000000100000000
.......................TGAA---AA--CTTTGTAGCATTTTATTTGTT.............................................................................................................................................................................................2711.00100000010000000000
........GTTCGGCGGCGAGGCTGAA---......................................................................................................................................................................................................................1911.00110000000000000000
........................GAA---AA--CTTTGTAGCATTTTATTTGTT.............................................................................................................................................................................................2611.00100010000000000000
...............GGCGAGGCTGAA---AA--CTTTGTAGC.........................................................................................................................................................................................................2311.00100100000000000000
.........................................................................................................................TTAATTGTGACGAAAGCTA------------ACAAACA.....................................................................................2611.00100000000100000000
droSec2
T-GAGCAAGTTCGGCGGCGAGGCTGAA---AA--CTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACGAAAGCTA------------ACAAA---------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.......................................................................................................................GATTAATTGTGACGAAAGCTA------------A...........................................................................................2211.0010100
...........................................................TTAGTAACACTTTCT--CTTAGATCGTATT--.........................................................................................................................................................2811.0011000
T-GAGCAAGTTCGGCGGCGAGGC.............................................................................................................................................................................................................................2211.0010010
......................................................................................ATT--GC----------AA-TTGAAGCCAACGAGATT.........................................................................................................................2411.0010100
.......................................................................................................................GATTAATTGTGACGAAAGC..........................................................................................................1911.0010010
.......................................................................................................................GATTAATTGTGACGAAAGCTA------------ACA.........................................................................................2411.0010100
........................................................................CT--CTTAGATCGTATT--GC----------AA-TTGA......................................................................................................................................2311.0010100
.....................................................................................................................GAGATTAATTGTGACGAAAGCT.........................................................................................................2211.0010010
........................................................................CT--CTTAGATCGTATT--GC----------AA-TTGAA.....................................................................................................................................2411.0011000
............................................................................................................................ATTGTGACGAAAGCTA------------ACAAA---------------------------------------------------------------------------------------2111.0010100
.......AGTTCGGCGGCGAGGCTGA..........................................................................................................................................................................................................................1911.0010001
.....................................................................................................................GAGATTAATTGTGACGAAAGC..........................................................................................................2111.0010010
.....................................................................................................................GAGATTAATTGTGACGAAAGCTA------------ACAAA---------------------------------------------------------------------------------------2811.0011000
........................................................AGTTTAGTAACACTTTCT--CTTAGATCG...............................................................................................................................................................2711.0011000
...........................................ATTTTATTTGTTAAGTTTAGTAAC.................................................................................................................................................................................2411.0010010
droYak3
---AGCAAGTTCGGCGGCGAGGCTGAA---AA--TTTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAAA-CCA-----A-------------CACAA-TAC--CCATACA--------------------------------CA------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................ACGAGATTAATTGTGACTAAAG...........................................................................................................22116.001682600000000
...................................................................................................................ACGAGATTAATTGTGACTAAA............................................................................................................2112.00201100000000
...........................................ATTTTATTTGTTAAGTTTAGT....................................................................................................................................................................................2112.00200000020000
............................................................................CTTAGATCGTATT--GC----------AA-TTGA......................................................................................................................................2112.00202000000000
.............................................................AGTAACACTTTCT--CTTAGATC................................................................................................................................................................2112.00201010000000
...................................................................................................................ACGAGATTAATTGTGACTA..............................................................................................................1912.00220000000000
...........................................................TTAGTAACACTTTCT--CTTAGA..................................................................................................................................................................2112.00201010000000
............................................................................................................GAAGCCAACGAGATTAATTGTGACT...............................................................................................................2511.00101000000000
.....................................................................................TATT--GC----------AA-TTGAAGCCAAC...............................................................................................................................1911.00101000000000
...................................................................ACTTTCT--CTTAGATCGTATT--GC----------AA-TTGA......................................................................................................................................2811.00100000010000
...................................TTTGTAGCATTTTATTTGTT.............................................................................................................................................................................................2011.00100000010000
.....................................................................................................................GAGATTAATTGTGACTAAAGCT.........................................................................................................2211.00100100000000
.................................................................................................................CAACGAGATTAATTGTGACT...............................................................................................................2011.00101000000000
.......................................................................................................................GATTAATTGTGACTAAAGCTA------------ACAAACA.....................................................................................2811.00110000000000
........................................................................CT--CTTAGATCGTATT--GC----------AA-T.........................................................................................................................................2011.00101000000000
.............................................................AGTAACACTTTCT--CTTAGATCGTATT--.........................................................................................................................................................2611.00101000000000
.............................................................................TTAGATCGTATT--GC----------AA-TTGAAGCC..................................................................................................................................2411.00110000000000
........................................................................................................A-TTGAAGCCAACGAGATTAATTGT...................................................................................................................2411.00100000010000
.............GCGGCGAGGCTGAA---AA--TTTTGT............................................................................................................................................................................................................2211.00101000000000
...................................................................................................................ACGAGATTAATTGTGACTAAAGC..........................................................................................................2311.00100100000000
........................................AGCATTTTATTTGTTAAGTTTAGT....................................................................................................................................................................................2411.00101000000000
...............................A--TTTTGTAGCATTTTATTTGTTA............................................................................................................................................................................................2311.00101000000000
......................................................................................ATT--GC----------AA-TTGAAGCCAACGA.............................................................................................................................2011.00101000000000
.............................................................AGTAACACTTTCT--CTTAGATCGTATT--GC----------.............................................................................................................................................2811.00101000000000
.............................................................AGTAACACTTTCT--CTTAGAT.................................................................................................................................................................2011.00100010000000
......AAGTTCGGCGGCGAGGCTG...........................................................................................................................................................................................................................1911.00101000000000
...............................................................TAACACTTTCT--CTTAGATCGTATT--GC----------G............................................................................................................................................2711.00101000000000
...............GGCGAGGCTGAA---AA--TTTTGTA...........................................................................................................................................................................................................2111.00100000100000
..............................................................................................................AGCCAACGAGATTAATTGT...................................................................................................................1911.00100000010000
............................................................................CTTAGATCGTATT--GC----------AA-TTGAAGC...................................................................................................................................2411.00100100000000
......AAGTTCGGCGGCGAGGCTGAA---......................................................................................................................................................................................................................2111.00100000010000
....................................................................................GTATT--GC----------AA-TTGAAGCCAACGAGAT..........................................................................................................................2511.00101000000000
.......................................................................................................AA-TTGAAGCCAACGAGATT.........................................................................................................................1911.00101000000000
droEre2
---AGCAAGTTCGGCGGCGAGGCTGAA----A--ATTTGTAGCATTTTATTTGTTAAGTTTAGTAACACTTTCT--CTTAGATCGTATT--GC----------AA-TTGAAGCCAACGAGATTAATTGTGACTAAAGCTA------------ACAAACAAAA--CCA-----A-------------CACAA-TAC--CCATACA--------------------------------C-------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................TAGATCGTATT--GC----------AA-TTGAAGCCAACGA.............................................................................................................................2817.0070000007
......................................................................................ATT--GC----------AA-TTGAAGCCAACGA.............................................................................................................................2013.0031000200
.....................................................................................................................GAGATTAATTGTGACTAAAGCTA------------ACA.........................................................................................2612.0022000000
...........................................................TTAGTAACACTTTCT--CTTAGATCGTATT--G........................................................................................................................................................2912.0020000200
............................................................................CTTAGATCGTATT--GC----------AA-TT........................................................................................................................................1912.0021000100
...........................................................................................................................................................AACAAAA--CCA-----A-------------CACAA-TAC--CC.............................................2111.0010100000
.....................................................................................TATT--GC----------AA-TTGAAGCCAACGAGAT..........................................................................................................................2411.0011000000
............................................................................CTTAGATCGTATT--GC----------AA-TTGAA.....................................................................................................................................2211.0010000100
.....................................................................................................................GAGATTAATTGTGACTAAAGCTA------------AC..........................................................................................2511.0010000100
.........................................................................................................................TTAATTGTGACTAAAGCTA------------ACA.........................................................................................2211.0011000000
............................................................................................................GAAGCCAACGAGATTAATTGT...................................................................................................................2111.0010000100
..............................................................GTAACACTTTCT--CTTAGATCGTATT--GC----------A............................................................................................................................................2811.0010000100
....GCAAGTTCGGCGGCGAGGCT............................................................................................................................................................................................................................2011.0011000000
...................................................................................................................ACGAGATTAATTGTGACTAAAGC..........................................................................................................2311.0010000100
......................................................................................................................AGATTAATTGTGACTAAAGC..........................................................................................................2011.0011000000
.............................................................AGTAACACTTTCT--CTTAGATCGT..............................................................................................................................................................2311.0010000100
..........................................................TTTAGTAACACTTTCT--CTTAGATCGTA.............................................................................................................................................................2711.0011000000
.......................................................................................................................GATTAATTGTGACTAAAGCT.........................................................................................................2011.0010001000
................................................................................................................................................................AA--CCA-----A-------------CACAA-TAC--CCATA..........................................1911.0010100000
..............................................................GTAACACTTTCT--CTTAGATCGT..............................................................................................................................................................2211.0010000100
......................CTGAA----A--ATTTGTAGCATTTTATTT................................................................................................................................................................................................2411.0010000010
...................................................................................................................ACGAGATTAATTGTGACTAAAG...........................................................................................................2211.0010000100
.......................TGAA----A--ATTTGTAGCATTTTATTT................................................................................................................................................................................................2311.0011000000

Generated: 10/20/2015 at 07:38 PM