dwi_809

CDS [Dwil\GK21647-cds]; exon [dwil_GLEANR_4749:2]; exon [dwil_GLEANR_4749:3]; CDS [Dwil\GK21647-cds]; intron [Dwil\GK21647-in]

##################################################--------------------------------------------------------------------------------################################################## TATACGCTGCCAACTGCTGCCCAAGCGCTAGGACGGAGACAAAGAGATTTGTAAGTACAATTGACAAAATGTGTATATGTACATACATAGATAATATTAATTTGAATTCATTTTTTTTTTTTTGCTGCAGCTCACTGATTCGGAAGAGGTCGCCGTGACTTTGCTTAAGGTCATGTATCA *************************************************.......((((((.....(((((((......))))))).......)))))).........*******************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body	V119 head	M020 head
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTT...................	26	0	1	15.00	15	13	0	1	1	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACT....................	25	0	1	10.00	10	9	1	0	0	0
.................................................TGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	26	0	1	8.00	8	4	4	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGG...............................	27	0	2	6.00	12	7	4	0	1	0
.................TGCCCAAGCGCTAGGACGGAGACAAAG........................................................................................................................................	27	0	2	5.50	11	10	1	0	0	0
................................................TTGTAAGTACAATTGACAAAATGTG...........................................................................................................	25	0	1	5.00	5	5	0	0	0	0
.......TGCCAACTGCTGCCCAAGCGCTAGGACG.................................................................................................................................................	28	0	1	4.00	4	4	0	0	0	0
..............TGCTGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................	25	0	2	3.50	7	6	1	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGT..............................	25	0	2	3.50	7	5	1	1	0	0
................................................TTGTAAGTACAATTGACAAAATGTGT..........................................................................................................	26	0	1	3.00	3	2	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................	25	0	2	3.00	6	5	1	0	0	0
..........CAACTGCTGCCCAAGCGCTAGGACGG................................................................................................................................................	26	0	1	3.00	3	2	1	0	0	0
................................................TTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	27	0	1	3.00	3	2	0	0	1	0
.......TGCCAACTGCTGCCCAAGCGCTAGGA...................................................................................................................................................	26	0	1	3.00	3	3	0	0	0	0
....................................................................................................................................CACTGATTCGGAAGAGGTCGCCG.........................	23	0	1	3.00	3	3	0	0	0	0
...................................................TAAGTACAATTGACAAAATGTGTATA.......................................................................................................	26	0	1	2.00	2	2	0	0	0	0
TATACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................	28	0	1	2.00	2	2	0	0	0	0
................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGCCG.........................	27	2	1	2.00	2	2	0	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGAC.....................	24	0	1	2.00	2	1	0	0	1	0
......................AAGCGCTAGGACGGAGACAAAGAGATT...................................................................................................................................	27	0	2	2.00	4	2	1	0	0	1
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTGCT...............	27	0	1	2.00	2	2	0	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCG.........................	24	0	1	2.00	2	2	0	0	0	0
...................................................................................TACATAGATAATATTAATTTGAATTCAT.....................................................................	28	0	1	2.00	2	1	1	0	0	0
..............TGCTGCCCAAGCGCTAGGACGGAG..............................................................................................................................................	24	0	2	2.00	4	4	0	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCGT........................	25	0	1	2.00	2	2	0	0	0	0
.........................CGCTAGGACGGAGACAAAGAGATTTG.................................................................................................................................	26	0	2	1.50	3	3	0	0	0	0
............................TAGGACGGAGACAAAGAGATTTGTAAG.............................................................................................................................	27	0	2	1.50	3	3	0	0	0	0
.......................................CAAAGAGATTTGTAAGTACAATTGACA..................................................................................................................	27	0	2	1.50	3	3	0	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAG................................	26	0	2	1.50	3	0	2	1	0	0
.......................................................TACAATTGACAAAATGTGTATATGTAC..................................................................................................	27	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTC..................	27	1	1	1.00	1	1	0	0	0	0
.................................................................................................................TTTTTTTTTTGCTGCAGCTCACTG...........................................	24	0	1	1.00	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................	26	0	2	1.00	2	1	1	0	0	0
.......TGCCAACTGCTGCCCAAGCGCTAGG....................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAG................................	23	0	2	1.00	2	1	0	1	0	0
..TACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTTTG.................	24	0	1	1.00	1	1	0	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCGTTA......................	27	1	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TGATTCGGAAGGGGTCGCCGTGACTTA..................	27	2	1	1.00	1	1	0	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTT.............................	26	1	2	1.00	2	2	0	0	0	0
........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAGG...............................	29	0	1	1.00	1	0	0	1	0	0
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTG.................	25	0	1	1.00	1	1	0	0	0	0
...ACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
....................................................................................................................................CACTGATTCGGAAGAGGTTGCCGTGA......................	26	1	1	1.00	1	1	0	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGT........................	21	0	1	1.00	1	0	1	0	0	0
............................TAGGACGGAGACAAAGAGATTTGTAA..............................................................................................................................	26	0	2	1.00	2	1	0	1	0	0
.................TGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................	23	0	2	1.00	2	1	1	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................	25	0	2	1.00	2	2	0	0	0	0
...............................................................................................................................CATATCACTGATTCGGAAGAGGTCGCCG.........................	28	2	1	1.00	1	1	0	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0
....CGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAG................................	28	0	1	1.00	1	0	0	1	0	0
........................................................................................................................................GATTCGGAAGAGGTCGCCGTGACT....................	24	0	1	1.00	1	1	0	0	0	0
.........................................................................................................................................ATTCGGAAGAGGTCGCCGTGACTTTG.................	26	0	1	1.00	1	1	0	0	0	0
.................................................TGTAAGTACAATTGACAAAATGT............................................................................................................	23	0	1	1.00	1	1	0	0	0	0
TATACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTGTT................	26	3	1	1.00	1	1	0	0	0	0
.................................................TGTAAGTACAATTGACAAAATGTGTATA.......................................................................................................	28	0	1	1.00	1	1	0	0	0	0
...............................................TTTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	28	0	1	1.00	1	1	0	0	0	0
...................................................................................TACATAGATAATATTAATTTGAAT.........................................................................	24	0	1	1.00	1	0	1	0	0	0
...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTT...................	22	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACA....................	25	1	1	1.00	1	1	0	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCGCT.......................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
......................................................................................................TGAATTCATTTTTTTTTTTTTGCTGC....................................................	26	0	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATTCGGAAGGGGTCGCCGTGACTT...................	26	1	1	1.00	1	1	0	0	0	0
............................................................................................................................................CGGAAGAGGTCGCCGTGACTTTGCT...............	25	0	1	1.00	1	1	0	0	0	0
..................................................GTAAGTACAATTGACAAAATGTGTA.........................................................................................................	25	0	1	1.00	1	1	0	0	0	0
.....................................................................................................................TTTTTTGCTGCAGCTCACTGATTCGG.....................................	26	0	1	1.00	1	1	0	0	0	0
..........CAACTGCTGCCCAAGCGCTAGGACGA................................................................................................................................................	26	1	1	1.00	1	1	0	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTT..................	27	0	1	1.00	1	0	1	0	0	0
....................................................................................................................................CACTGATTCGGAAGAGGTCG............................	20	0	2	0.50	1	1	0	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGA.................................	25	0	2	0.50	1	1	0	0	0	0
..............................................................................................................................GCAGCTCACTGATTCGGAAGAGGT..............................	24	0	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACT...........................................................................................................................................	24	1	2	0.50	1	1	0	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	27	0	2	0.50	1	1	0	0	0	0
...........................................................................................................................GCTGCAGCTCACTGATTCGGAAGAGG...............................	26	0	2	0.50	1	0	1	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGT...............................	27	1	2	0.50	1	0	0	1	0	0
............................TAGGACGGAGACAAAGAGATTTCTCAC.............................................................................................................................	27	3	2	0.50	1	1	0	0	0	0
............................TAGGACGGAGACAAAGAGATTTGGAA..............................................................................................................................	26	1	2	0.50	1	1	0	0	0	0
...........AACTGCTGCCCAAGCGCTAG.....................................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGCC..........................	26	2	2	0.50	1	1	0	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTC.............................	26	0	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAAC........................................................................................................................................	27	1	2	0.50	1	1	0	0	0	0
............................TAGGACGGAGACAAAGAGATTTCTCACT............................................................................................................................	28	3	2	0.50	1	1	0	0	0	0
.................................................TGTAAGTACAATTGACAATATGTGTA.........................................................................................................	26	1	2	0.50	1	0	1	0	0	0
...............GCTGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
..........................GCTAGGACGGAGACAAAGAGAT....................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
............................TAGGACGGAGACAAAGAGATTTGT................................................................................................................................	24	0	2	0.50	1	0	0	1	0	0
..............................GGACGGAGACAAAGAGATTTCTCAC.............................................................................................................................	25	3	2	0.50	1	1	0	0	0	0
................................................................................................................................AGCTCACTGATTCGGAAGAGGTCGC...........................	25	0	2	0.50	1	1	0	0	0	0
.....................CAAGCGCTGGGACGGAGAC............................................................................................................................................	19	1	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAT.........................................................................................................................................	26	1	2	0.50	1	0	1	0	0	0
......................AAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	23	0	2	0.50	1	0	0	0	1	0
............................TAGGACGGAGACAAAGAGATTTGTA...............................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
....................CCAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................	27	0	2	0.50	1	1	0	0	0	0
................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGC...........................	25	2	2	0.50	1	1	0	0	0	0
.......................................CAAAGAGATTTGTAAGTACAATTGAC...................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................	22	0	2	0.50	1	1	0	0	0	0
................................ACGGAGACAAAGAGATTTGTAAGTA...........................................................................................................................	25	0	2	0.50	1	1	0	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
............................................................................................................................CTGCAGCTCACTGATTCGGAAG..................................	22	0	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGA...............................................................................................................................................	20	0	2	0.50	1	1	0	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAAAA........................................................................................................................................	26	1	2	0.50	1	1	0	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGG...............................	24	0	2	0.50	1	0	1	0	0	0
......................AAGCGCTAGGACGGAGACAAAGAG......................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
............................................................................................................TCATTTTTTTTTTTTGCTGCAGCTCAC.............................................	27	3	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACA...........................................................................................................................................	24	0	2	0.50	1	1	0	0	0	0
..............TGCTGCCCAAGCGCTAGGACGGAGATA...........................................................................................................................................	27	1	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGTAGACAA..........................................................................................................................................	25	1	2	0.50	1	1	0	0	0	0
.....................CAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................	26	0	2	0.50	1	1	0	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGGT..............................	28	0	2	0.50	1	1	0	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	28	0	2	0.50	1	1	0	0	0	0
...............................................................................................................TTTTTTTTTTTTGCTGCAGC.................................................	20	0	2	0.50	1	1	0	0	0	0
............................TAGGACGGAGACAAAGAGATT...................................................................................................................................	21	0	2	0.50	1	1	0	0	0	0
............................TAGGACGGAGACAAAGAGATTTGTAAT.............................................................................................................................	27	1	2	0.50	1	1	0	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCC..........................	23	0	2	0.50	1	1	0	0	0	0
.........................................AAGAGATTTGTAAGTACAATT......................................................................................................................	21	0	3	0.33	1	0	0	0	1	0
.........................................AAGAGATTTGTAAGTACAATTGACAA.................................................................................................................	26	0	3	0.33	1	1	0	0	0	0
...................................................................................................................................................GGTTGCCGGGACTTTGCG...............	18	3	20	0.05	1	1	0	0	0	0

##################################################--------------------------------------------------------------------------------##################################################
TATACGCTGCCAACTGCTGCCCAAGCGCTAGGACGGAGACAAAGAGATTTGTAAGTACAATTGACAAAATGTGTATATGTACATACATAGATAATATTAATTTGAATTCATTTTTTTTTTTTTGCTGCAGCTCACTGATTCGGAAGAGGTCGCCGTGACTTTGCTTAAGGTCATGTATCA
***************************************************.......((((((.....(((((((......))))))).......)))))).........*********************************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

V117
male body

V119
head

M020
head

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTT...................

15.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACT....................

10.00

.................................................TGTAAGTACAATTGACAAAATGTGTA.........................................................................................................

8.00

..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGG...............................

6.00

.................TGCCCAAGCGCTAGGACGGAGACAAAG........................................................................................................................................

5.50

................................................TTGTAAGTACAATTGACAAAATGTG...........................................................................................................

5.00

.......TGCCAACTGCTGCCCAAGCGCTAGGACG.................................................................................................................................................

4.00

..............TGCTGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................

3.50

.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGT..............................

3.50

................................................TTGTAAGTACAATTGACAAAATGTGT..........................................................................................................

3.00

.................TGCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................

3.00

..........CAACTGCTGCCCAAGCGCTAGGACGG................................................................................................................................................

3.00

................................................TTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................

3.00

.......TGCCAACTGCTGCCCAAGCGCTAGGA...................................................................................................................................................

3.00

....................................................................................................................................CACTGATTCGGAAGAGGTCGCCG.........................

3.00

...................................................TAAGTACAATTGACAAAATGTGTATA.......................................................................................................

2.00

TATACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................

2.00

................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGCCG.........................

2.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGAC.....................

2.00

......................AAGCGCTAGGACGGAGACAAAGAGATT...................................................................................................................................

2.00

..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTGCT...............

2.00

...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCG.........................

2.00

...................................................................................TACATAGATAATATTAATTTGAATTCAT.....................................................................

2.00

..............TGCTGCCCAAGCGCTAGGACGGAG..............................................................................................................................................

2.00

...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCGT........................

2.00

.........................CGCTAGGACGGAGACAAAGAGATTTG.................................................................................................................................

1.50

............................TAGGACGGAGACAAAGAGATTTGTAAG.............................................................................................................................

1.50

.......................................CAAAGAGATTTGTAAGTACAATTGACA..................................................................................................................

1.50

..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAG................................

1.50

.......................................................TACAATTGACAAAATGTGTATATGTAC..................................................................................................

1.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTC..................

1.00

.................................................................................................................TTTTTTTTTTGCTGCAGCTCACTG...........................................

1.00

.................TGCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................

1.00

.......TGCCAACTGCTGCCCAAGCGCTAGG....................................................................................................................................................

1.00

.............................................................................................................................TGCAGCTCACTGATTCGGAAGAG................................

1.00

..TACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................

1.00

...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTTTG.................

1.00

...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCGTTA......................

1.00

.......................................................................................................................................TGATTCGGAAGGGGTCGCCGTGACTTA..................

1.00

.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTT.............................

1.00

........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAGG...............................

1.00

..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTG.................

1.00

...ACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................

1.00

....................................................................................................................................CACTGATTCGGAAGAGGTTGCCGTGA......................

1.00

..TACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................

1.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGT........................

1.00

............................TAGGACGGAGACAAAGAGATTTGTAA..............................................................................................................................

1.00

.................TGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................

1.00

..................GCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................

1.00

...............................................................................................................................CATATCACTGATTCGGAAGAGGTCGCCG.........................

1.00

..TACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................

1.00

....CGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................

1.00

........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAG................................

1.00

........................................................................................................................................GATTCGGAAGAGGTCGCCGTGACT....................

1.00

.........................................................................................................................................ATTCGGAAGAGGTCGCCGTGACTTTG.................

1.00

.................................................TGTAAGTACAATTGACAAAATGT............................................................................................................

1.00

TATACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................

1.00

..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTGTT................

1.00

.................................................TGTAAGTACAATTGACAAAATGTGTATA.......................................................................................................

1.00

...............................................TTTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................

1.00

...................................................................................TACATAGATAATATTAATTTGAAT.........................................................................

1.00

...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTT...................

1.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACA....................

1.00

..TACGCTGCCAACTGCTGCCCAAGCGCT.......................................................................................................................................................

1.00

......................................................................................................TGAATTCATTTTTTTTTTTTTGCTGC....................................................

1.00

.......................................................................................................................................TGATTCGGAAGGGGTCGCCGTGACTT...................

1.00

............................................................................................................................................CGGAAGAGGTCGCCGTGACTTTGCT...............

1.00

..................................................GTAAGTACAATTGACAAAATGTGTA.........................................................................................................

1.00

.....................................................................................................................TTTTTTGCTGCAGCTCACTGATTCGG.....................................

1.00

..........CAACTGCTGCCCAAGCGCTAGGACGA................................................................................................................................................

1.00

.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTT..................

1.00

....................................................................................................................................CACTGATTCGGAAGAGGTCG............................

0.50

..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGA.................................

0.50

..............................................................................................................................GCAGCTCACTGATTCGGAAGAGGT..............................

0.50

.................TGCCCAAGCGCTAGGACGGAGACT...........................................................................................................................................

0.50

..................GCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................

0.50

...........................................................................................................................GCTGCAGCTCACTGATTCGGAAGAGG...............................

0.50

..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGT...............................

0.50

............................TAGGACGGAGACAAAGAGATTTCTCAC.............................................................................................................................

0.50

............................TAGGACGGAGACAAAGAGATTTGGAA..............................................................................................................................

0.50

...........AACTGCTGCCCAAGCGCTAG.....................................................................................................................................................

0.50

................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGCC..........................

0.50

.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTC.............................

0.50

.................TGCCCAAGCGCTAGGACGGAGACAAAC........................................................................................................................................

0.50

............................TAGGACGGAGACAAAGAGATTTCTCACT............................................................................................................................

0.50

.................................................TGTAAGTACAATTGACAATATGTGTA.........................................................................................................

0.50

...............GCTGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................

0.50

..........................GCTAGGACGGAGACAAAGAGAT....................................................................................................................................

0.50

............................TAGGACGGAGACAAAGAGATTTGT................................................................................................................................

0.50

..............................GGACGGAGACAAAGAGATTTCTCAC.............................................................................................................................

0.50

................................................................................................................................AGCTCACTGATTCGGAAGAGGTCGC...........................

0.50

.....................CAAGCGCTGGGACGGAGAC............................................................................................................................................

0.50

.................TGCCCAAGCGCTAGGACGGAGACAAT.........................................................................................................................................

0.50

......................AAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................

0.50

............................TAGGACGGAGACAAAGAGATTTGTA...............................................................................................................................

0.50

....................CCAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................

0.50

................................................................................................................................TTCTCACTGATTCGGAAGAGGTCGC...........................

0.50

.......................................CAAAGAGATTTGTAAGTACAATTGAC...................................................................................................................

0.50

.................TGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................

0.50

................................ACGGAGACAAAGAGATTTGTAAGTA...........................................................................................................................

0.50

..................GCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................

0.50

............................................................................................................................CTGCAGCTCACTGATTCGGAAG..................................

0.50

.................TGCCCAAGCGCTAGGACGGA...............................................................................................................................................

0.50

..................GCCCAAGCGCTAGGACGGAGACAAAA........................................................................................................................................

0.50

.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGG...............................

0.50

......................AAGCGCTAGGACGGAGACAAAGAG......................................................................................................................................

0.50

............................................................................................................TCATTTTTTTTTTTTGCTGCAGCTCAC.............................................

0.50

.................TGCCCAAGCGCTAGGACGGAGACA...........................................................................................................................................

0.50

..............TGCTGCCCAAGCGCTAGGACGGAGATA...........................................................................................................................................

0.50

.................TGCCCAAGCGCTAGGACGTAGACAA..........................................................................................................................................

0.50

.....................CAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................

0.50

..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGGT..............................

0.50

.................TGCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................

0.50

...............................................................................................................TTTTTTTTTTTTGCTGCAGC.................................................

0.50

............................TAGGACGGAGACAAAGAGATT...................................................................................................................................

0.50

............................TAGGACGGAGACAAAGAGATTTGTAAT.............................................................................................................................

0.50

...................................................................................................................................TCACTGATTCGGAAGAGGTCGCC..........................

0.50

.........................................AAGAGATTTGTAAGTACAATT......................................................................................................................

0.33

.........................................AAGAGATTTGTAAGTACAATTGACAA.................................................................................................................

0.33

...................................................................................................................................................GGTTGCCGGGACTTTGCG...............

0.05

ATATGCGACGGTTGACGACGGGTTCGCGATCCTGCCTCTGTTTCTCTAAACATTCATGTTAACTGTTTTACACATATACATGTATGTATCTATTATAATTAAACTTAAGTAAAAAAAAAAAAACGACGTCGAGTGACTAAGCCTTCTCCAGCGGCACTGAAACGAATTCCAGTACATAGT *******************************************************************.......((((((.....(((((((......))))))).......)))))).........*************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head
...........................................................................................................................CGACGTCGAGTGACTAAGCCTT...................................	22	0	2	3.00	6	6	0	0
..........................................................................................................................ACGACGTCGAGTGACTAAGCCTT...................................	23	0	2	3.00	6	6	0	0
.........................GCGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................	24	0	2	2.00	4	4	0	0
.......................................................................................................................AAAACGACGTCGAGTGACTAAGCCTT...................................	26	0	1	2.00	2	2	0	0
........................................................................................................................AAACGACGTCGAGTGACTAAGCCTT...................................	25	0	1	2.00	2	2	0	0
....................................TCTGTTTCTCTAAACATTCATGTTA.......................................................................................................................	25	0	2	1.50	3	3	0	0
......................................................................................................................AAAAACGACGTCGAGTGACTAAGCCTT...................................	27	0	1	1.00	1	1	0	0
....GCGACGGTTGACGACGGGTTCGCGAT......................................................................................................................................................	26	0	1	1.00	1	1	0	0
..........GTTGACGACGGGTTCGAGATCCT...................................................................................................................................................	23	1	1	1.00	1	0	1	0
.........................................................................................................TAAGTAAAAAAAAAAAAACGACGTCGA................................................	27	0	1	1.00	1	1	0	0
....GTTACGGTTGACGACGGTTTCGCGAT......................................................................................................................................................	26	3	1	1.00	1	0	0	1
.........................................................................................................................AACGACGTCGAGTGACTAAGCCTT...................................	24	0	2	1.00	2	2	0	0
.......................................................................................................................................................CGGCACTGAAACGAATTCCAGTAC.....	24	0	1	1.00	1	1	0	0
.................................GCCTCTGTTTCTCTAAACATTCATG..........................................................................................................................	25	0	2	1.00	2	2	0	0
.....TTACGGTTGACGACGGGTTCGCGAT......................................................................................................................................................	25	2	1	1.00	1	0	1	0
...................................................................TTACACATATACATGTATGTATCTAT.......................................................................................	26	0	1	1.00	1	1	0	0
.....................................................................................................................................................AGCGGCACTGAAACGAATTCCA.........	22	0	1	1.00	1	1	0	0
....................GGTTCGCGATCCTGCCTC..............................................................................................................................................	18	0	2	1.00	2	2	0	0
...............................................................................................................................................TTCTCCAGCGGCACTGAAACGA...............	22	0	1	1.00	1	1	0	0
......................................TGTTTCTCTAAACATTCATGT.........................................................................................................................	21	0	2	0.50	1	0	1	0
..........................CGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................	23	0	2	0.50	1	1	0	0
..................................TCTCTGTTTCTCTAAACATTCATG..........................................................................................................................	24	1	2	0.50	1	1	0	0
..................CGGGTTCGCGATCCTGCCTC..............................................................................................................................................	20	0	2	0.50	1	1	0	0
...............................CTGCCTCTGTTTCTCTAAACATTCAT...........................................................................................................................	26	0	2	0.50	1	1	0	0
................................TGCCCCTGTTTCTCTAAACATTCATG..........................................................................................................................	26	1	2	0.50	1	0	1	0
..............................CCTGCCTCTGTTTCTCTAAACATTCATGT.........................................................................................................................	29	0	2	0.50	1	1	0	0
...............................................................................................................................GTCGAGTGACTAAGCCTTCTCC...............................	22	0	2	0.50	1	1	0	0
...........................GATCCTGCCTCTGTTTCTCTAA...................................................................................................................................	22	0	2	0.50	1	1	0	0
..........................................................................................................................ACGACGTCGAGTGACTAAGCCT....................................	22	0	2	0.50	1	1	0	0
............................................................................................................................GACGTCGAGTGACTAAGCCTTC..................................	22	0	2	0.50	1	1	0	0
.......................TCGCGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................	26	0	2	0.50	1	1	0	0
.................................GCCTCTGTTTCTCTAAACATTCATGT.........................................................................................................................	26	0	2	0.50	1	1	0	0
..........................................................................................................................ACGACGTCGAGTGACTAGGCCTT...................................	23	1	2	0.50	1	1	0	0
.........................................TTCTCTAAACATTCATGTTAACTG...................................................................................................................	24	0	3	0.33	1	1	0	0

ATATGCGACGGTTGACGACGGGTTCGCGATCCTGCCTCTGTTTCTCTAAACATTCATGTTAACTGTTTTACACATATACATGTATGTATCTATTATAATTAAACTTAAGTAAAAAAAAAAAAACGACGTCGAGTGACTAAGCCTTCTCCAGCGGCACTGAAACGAATTCCAGTACATAGT
*********************************************************************.......((((((.....(((((((......))))))).......)))))).........***************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

M020
head

...........................................................................................................................CGACGTCGAGTGACTAAGCCTT...................................

3.00

..........................................................................................................................ACGACGTCGAGTGACTAAGCCTT...................................

3.00

.........................GCGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................

2.00

.......................................................................................................................AAAACGACGTCGAGTGACTAAGCCTT...................................

2.00

........................................................................................................................AAACGACGTCGAGTGACTAAGCCTT...................................

2.00

....................................TCTGTTTCTCTAAACATTCATGTTA.......................................................................................................................

1.50

......................................................................................................................AAAAACGACGTCGAGTGACTAAGCCTT...................................

1.00

....GCGACGGTTGACGACGGGTTCGCGAT......................................................................................................................................................

1.00

..........GTTGACGACGGGTTCGAGATCCT...................................................................................................................................................

1.00

.........................................................................................................TAAGTAAAAAAAAAAAAACGACGTCGA................................................

1.00

....GTTACGGTTGACGACGGTTTCGCGAT......................................................................................................................................................

1.00

.........................................................................................................................AACGACGTCGAGTGACTAAGCCTT...................................

1.00

.......................................................................................................................................................CGGCACTGAAACGAATTCCAGTAC.....

1.00

.................................GCCTCTGTTTCTCTAAACATTCATG..........................................................................................................................

1.00

.....TTACGGTTGACGACGGGTTCGCGAT......................................................................................................................................................

1.00

...................................................................TTACACATATACATGTATGTATCTAT.......................................................................................

1.00

.....................................................................................................................................................AGCGGCACTGAAACGAATTCCA.........

1.00

....................GGTTCGCGATCCTGCCTC..............................................................................................................................................

1.00

...............................................................................................................................................TTCTCCAGCGGCACTGAAACGA...............

1.00

......................................TGTTTCTCTAAACATTCATGT.........................................................................................................................

0.50

..........................CGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................

0.50

..................................TCTCTGTTTCTCTAAACATTCATG..........................................................................................................................

0.50

..................CGGGTTCGCGATCCTGCCTC..............................................................................................................................................

0.50

...............................CTGCCTCTGTTTCTCTAAACATTCAT...........................................................................................................................

0.50

................................TGCCCCTGTTTCTCTAAACATTCATG..........................................................................................................................

0.50

..............................CCTGCCTCTGTTTCTCTAAACATTCATGT.........................................................................................................................

0.50

...............................................................................................................................GTCGAGTGACTAAGCCTTCTCC...............................

0.50

...........................GATCCTGCCTCTGTTTCTCTAA...................................................................................................................................

0.50

..........................................................................................................................ACGACGTCGAGTGACTAAGCCT....................................

0.50

............................................................................................................................GACGTCGAGTGACTAAGCCTTC..................................

0.50

.......................TCGCGATCCTGCCTCTGTTTCTCTAA...................................................................................................................................

0.50

.................................GCCTCTGTTTCTCTAAACATTCATGT.........................................................................................................................

0.50

..........................................................................................................................ACGACGTCGAGTGACTAGGCCTT...................................

0.50

.........................................TTCTCTAAACATTCATGTTAACTG...................................................................................................................

0.33

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004513:104669-104848 -	dwi_809	TATACGCTGCCAACTGCTGCCCAAGCGCTAGGACGGAGACAAAGAGATTTGTAAGTACAATTGACAAAATGTGTATATGTACATACATAGATAATATTAATTTGAATTCATTTTTTTTTTTTTGCTGCAGCTCACTGATTCGGAAGAGGTCGCCGTGACTTTGCTTAAGGTCATGTATCA

Species

Coordinate

Alignment

droWil2

scf2_1100000004513:104669-104848 -

dwi_809

TATACGCTGCCAACTGCTGCCCAAGCGCTAGGACGGAGACAAAGAGATTTGTAAGTACAATTGACAAAATGTGTATATGTACATACATAGATAATATTAATTTGAATTCATTTTTTTTTTTTTGCTGCAGCTCACTGATTCGGAAGAGGTCGCCGTGACTTTGCTTAAGGTCATGTATCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TATACGCTGCCAACTGCTGCCCAAGCGCTAGGACGGAGACAAAGAGATTTGTAAGTACAATTGACAAAATGTGTATATGTACATACATAGATAATATTAATTTGAATTCATTTTTTTTTTTTTGCTGCAGCTCACTGATTCGGAAGAGGTCGCCGTGACTTTGCTTAAGGTCATGTATCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTT...................	26	1	15.00	15	0	13	1	0	1
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACT....................	25	1	10.00	10	0	9	0	1	0
.................................................TGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	26	1	8.00	8	0	4	0	4	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGG...............................	27	2	6.00	12	0	7	0	4	1
.................TGCCCAAGCGCTAGGACGGAGACAAAG........................................................................................................................................	27	2	5.50	11	0	10	0	1	0
................................................TTGTAAGTACAATTGACAAAATGTG...........................................................................................................	25	1	5.00	5	0	5	0	0	0
.......TGCCAACTGCTGCCCAAGCGCTAGGACG.................................................................................................................................................	28	1	4.00	4	0	4	0	0	0
..............TGCTGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................	25	2	3.50	7	0	6	0	1	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGT..............................	25	2	3.50	7	0	5	1	1	0
................................................TTGTAAGTACAATTGACAAAATGTGT..........................................................................................................	26	1	3.00	3	0	2	0	1	0
.................TGCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................	25	2	3.00	6	0	5	0	1	0
..........CAACTGCTGCCCAAGCGCTAGGACGG................................................................................................................................................	26	1	3.00	3	0	2	0	1	0
................................................TTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	27	1	3.00	3	0	2	0	0	1
.......TGCCAACTGCTGCCCAAGCGCTAGGA...................................................................................................................................................	26	1	3.00	3	0	3	0	0	0
....................................................................................................................................CACTGATTCGGAAGAGGTCGCCG.........................	23	1	3.00	3	0	3	0	0	0
...................................................TAAGTACAATTGACAAAATGTGTATA.......................................................................................................	26	1	2.00	2	0	2	0	0	0
TATACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................	28	1	2.00	2	0	2	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGAC.....................	24	1	2.00	2	0	1	0	0	1
......................AAGCGCTAGGACGGAGACAAAGAGATT...................................................................................................................................	27	2	2.00	4	1	2	0	1	0
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTGCT...............	27	1	2.00	2	0	2	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCG.........................	24	1	2.00	2	0	2	0	0	0
...................................................................................TACATAGATAATATTAATTTGAATTCAT.....................................................................	28	1	2.00	2	0	1	0	1	0
..............TGCTGCCCAAGCGCTAGGACGGAG..............................................................................................................................................	24	2	2.00	4	0	4	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCCGT........................	25	1	2.00	2	0	2	0	0	0
.........................CGCTAGGACGGAGACAAAGAGATTTG.................................................................................................................................	26	2	1.50	3	0	3	0	0	0
............................TAGGACGGAGACAAAGAGATTTGTAAG.............................................................................................................................	27	2	1.50	3	0	3	0	0	0
.......................................CAAAGAGATTTGTAAGTACAATTGACA..................................................................................................................	27	2	1.50	3	0	3	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAG................................	26	2	1.50	3	0	0	1	2	0
.......................................................TACAATTGACAAAATGTGTATATGTAC..................................................................................................	27	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTC..................	27	1	1.00	1	0	1	0	0	0
.................................................................................................................TTTTTTTTTTGCTGCAGCTCACTG...........................................	24	1	1.00	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................	26	2	1.00	2	0	1	0	1	0
.......TGCCAACTGCTGCCCAAGCGCTAGG....................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAG................................	23	2	1.00	2	0	1	1	0	0
..TACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTTTG.................	24	1	1.00	1	0	1	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTT.............................	26	2	1.00	2	0	2	0	0	0
........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAGG...............................	29	1	1.00	1	0	0	1	0	0
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTTG.................	25	1	1.00	1	0	1	0	0	0
...ACGCTGCCAACTGCTGCCCAAGC..........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGT........................	21	1	1.00	1	0	0	0	1	0
............................TAGGACGGAGACAAAGAGATTTGTAA..............................................................................................................................	26	2	1.00	2	0	1	1	0	0
.................TGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................	23	2	1.00	2	0	1	0	1	0
..................GCCCAAGCGCTAGGACGGAGACAAA.........................................................................................................................................	25	2	1.00	2	0	2	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCGC........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
....CGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
........................................................................................................................TTTGCTGCAGCTCACTGATTCGGAAGAG................................	28	1	1.00	1	0	0	1	0	0
........................................................................................................................................GATTCGGAAGAGGTCGCCGTGACT....................	24	1	1.00	1	0	1	0	0	0
.........................................................................................................................................ATTCGGAAGAGGTCGCCGTGACTTTG.................	26	1	1.00	1	0	1	0	0	0
.................................................TGTAAGTACAATTGACAAAATGT............................................................................................................	23	1	1.00	1	0	1	0	0	0
TATACGCTGCCAACTGCTGCCCAAGCG.........................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..........................................................................................................................................TTCGGAAGAGGTCGCCGTGACTTGTT................	26	1	1.00	1	0	1	0	0	0
.................................................TGTAAGTACAATTGACAAAATGTGTATA.......................................................................................................	28	1	1.00	1	0	1	0	0	0
...............................................TTTGTAAGTACAATTGACAAAATGTGTA.........................................................................................................	28	1	1.00	1	0	1	0	0	0
...................................................................................TACATAGATAATATTAATTTGAAT.........................................................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................TCGGAAGAGGTCGCCGTGACTT...................	22	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACA....................	25	1	1.00	1	0	1	0	0	0
..TACGCTGCCAACTGCTGCCCAAGCGCT.......................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
......................................................................................................TGAATTCATTTTTTTTTTTTTGCTGC....................................................	26	1	1.00	1	0	0	0	1	0
............................................................................................................................................CGGAAGAGGTCGCCGTGACTTTGCT...............	25	1	1.00	1	0	1	0	0	0
..................................................GTAAGTACAATTGACAAAATGTGTA.........................................................................................................	25	1	1.00	1	0	1	0	0	0
.....................................................................................................................TTTTTTGCTGCAGCTCACTGATTCGG.....................................	26	1	1.00	1	0	1	0	0	0
..........CAACTGCTGCCCAAGCGCTAGGACGA................................................................................................................................................	26	1	1.00	1	0	1	0	0	0
.......................................................................................................................................TGATTCGGAAGAGGTCGCCGTGACTTT..................	27	1	1.00	1	0	0	0	1	0
....................................................................................................................................CACTGATTCGGAAGAGGTCG............................	20	2	0.50	1	0	1	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGA.................................	25	2	0.50	1	0	1	0	0	0
..............................................................................................................................GCAGCTCACTGATTCGGAAGAGGT..............................	24	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACT...........................................................................................................................................	24	2	0.50	1	0	1	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	27	2	0.50	1	0	1	0	0	0
...........................................................................................................................GCTGCAGCTCACTGATTCGGAAGAGG...............................	26	2	0.50	1	0	0	0	1	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGT...............................	27	2	0.50	1	0	0	1	0	0
...........AACTGCTGCCCAAGCGCTAG.....................................................................................................................................................	20	2	0.50	1	0	1	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGGTC.............................	26	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAAC........................................................................................................................................	27	2	0.50	1	0	1	0	0	0
...............GCTGCCCAAGCGCTAGGACGGAGAC............................................................................................................................................	25	2	0.50	1	0	1	0	0	0
..........................GCTAGGACGGAGACAAAGAGAT....................................................................................................................................	22	2	0.50	1	0	1	0	0	0
............................TAGGACGGAGACAAAGAGATTTGT................................................................................................................................	24	2	0.50	1	0	0	1	0	0
................................................................................................................................AGCTCACTGATTCGGAAGAGGTCGC...........................	25	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAT.........................................................................................................................................	26	2	0.50	1	0	0	0	1	0
......................AAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	23	2	0.50	1	0	0	0	0	1
............................TAGGACGGAGACAAAGAGATTTGTA...............................................................................................................................	25	2	0.50	1	0	1	0	0	0
....................CCAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................	27	2	0.50	1	0	1	0	0	0
.......................................CAAAGAGATTTGTAAGTACAATTGAC...................................................................................................................	26	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGA.............................................................................................................................................	22	2	0.50	1	0	1	0	0	0
................................ACGGAGACAAAGAGATTTGTAAGTA...........................................................................................................................	25	2	0.50	1	0	1	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAA..........................................................................................................................................	24	2	0.50	1	0	1	0	0	0
............................................................................................................................CTGCAGCTCACTGATTCGGAAG..................................	22	2	0.50	1	0	0	0	1	0
.................TGCCCAAGCGCTAGGACGGA...............................................................................................................................................	20	2	0.50	1	0	1	0	0	0
..................GCCCAAGCGCTAGGACGGAGACAAAA........................................................................................................................................	26	2	0.50	1	0	1	0	0	0
.............................................................................................................................TGCAGCTCACTGATTCGGAAGAGG...............................	24	2	0.50	1	0	0	0	1	0
......................AAGCGCTAGGACGGAGACAAAGAG......................................................................................................................................	24	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACA...........................................................................................................................................	24	2	0.50	1	0	1	0	0	0
.....................CAAGCGCTAGGACGGAGACAAAGAGA.....................................................................................................................................	26	2	0.50	1	0	1	0	0	0
..........................................................................................................................TGCTGCAGCTCACTGATTCGGAAGAGGT..............................	28	2	0.50	1	0	1	0	0	0
.................TGCCCAAGCGCTAGGACGGAGACAAAGA.......................................................................................................................................	28	2	0.50	1	0	1	0	0	0
...............................................................................................................TTTTTTTTTTTTGCTGCAGC.................................................	20	2	0.50	1	0	1	0	0	0
............................TAGGACGGAGACAAAGAGATT...................................................................................................................................	21	2	0.50	1	0	1	0	0	0
............................TAGGACGGAGACAAAGAGATTTGTAAT.............................................................................................................................	27	2	0.50	1	0	1	0	0	0
...................................................................................................................................TCACTGATTCGGAAGAGGTCGCC..........................	23	2	0.50	1	0	1	0	0	0
.........................................AAGAGATTTGTAAGTACAATT......................................................................................................................	21	3	0.33	1	0	0	0	0	1
.........................................AAGAGATTTGTAAGTACAATTGACAA.................................................................................................................	26	3	0.33	1	0	1	0	0	0

dwi_809

scf2_1100000004513:104719-104798 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.7	-4.7	-4.6