ID:

dwi_797

 Coordinate:

scf2_1100000004512:1990222-1990372 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-16.4 -16.4 -16.3

Flybase annnotation

CDS [Dwil\GK19478-cds]; exon [dwil_GLEANR_2109:1]; intron [Dwil\GK19478-in]

No Repeatable elements found

mature
  1. scf2_1100000005920:1053-1075 -
  2. scf2_1100000002046:3637-3659 -
  3. scf2_1100000004401:944131-944153 -
  4. scf2_1100000004511:9663181-9663203 -
  5. dwi_797  scf2_1100000004512:1990242-1990264 -
  6. scf2_1100000004542:115061-115083 -
  7. scf2_1100000004558:1446626-1446648 -
  8. scf2_1100000004585:795224-795246 -
  9. scf2_1100000004729:5528-5550 -
  10. scf2_1100000004887:545377-545399 -
  11. scf2_1100000004943:342044-342066 -
  12. scf2_1100000004943:1592510-1592532 -
  13. scf2_1100000004943:1961595-1961617 -
  14. scf2_1100000004909:11186640-11186662 -
  15. scf2_1100000004949:1204968-1204990 -
  16. scf2_1100000004953:24348-24370 -
  17. scf2_1100000004954:4947824-4947846 -
  18. scf2_1100000004961:2681700-2681722 -
  19. scf2_1100000004961:4466736-4466758 -
  20. scf2_1100000000143:550-572 -
star

Sense Strand Reads

--################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATGAAGAAGACTGAGGCAATGAAGCTTTTCCAAGAAGTAAAAGAAGTAGTAAGTACTAAAAATATATCTAAATGGAAGCTAGAAGCTAACTTCGGCAATGCCAAAGTTAATATACCCCTTGCAGTCCTTTGCAATAATTTGTTTACATTTTGAAAATTCTTTCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTC
**************************************************.............................(((...)))((((((.(((...))).)))))).........((((((....))))))...(((((((.....((((..........................)))).....)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
............................................................................TAAGCCAGAAGCTAACTTCGCC......................................................................................................................................................... 22 3 2 0.50 1 1
............................................................................................................................................................TATTCTTTCCCTGCAACTTAATTCATC.................................................................... 27 2 19 0.05 1 1
..............................................................................................................................................................TTCTTTCCCTGCAACTCAATTCA...................................................................... 23 0 20 0.05 1 1
...................................................................................................................................................................TCCCTGCAACTCAATTCATCAATACA.............................................................. 26 0 20 0.05 1 1
...............................................................................................................................................................TCTTTCCCTGCAACTCAATTCATC.................................................................... 24 0 20 0.05 1 1

Anti-sense strand reads

TTTACTTCTTCTGACTCCGTTACTTCGAAAAGGTTCTTCATTTTCTTCATCATTCATGATTTTTATATAGATTTACCTTCGATCTTCGATTGAAGCCGTTACGGTTTCAATTATATGGGGAACGTCAGGAAACGTTATTAAACAAATGTAAAACTTTTAAGAAAGGGACGTTGAGTTAAGTAGTTATGTGTTTGTTTTGTAATTTTAATAATGAGAAAAAGGATGTTATAAAAGAAGAAGAAGCTAGTAAG
**************************************************.............................(((...)))((((((.(((...))).)))))).........((((((....))))))...(((((((.....((((..........................)))).....)))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
...................................................................................................................................................................AGGGACGTTGAGTTAAGTAGTTAT................................................................ 24 0 20 0.55 11 11 0 0
..................................................................................................................................................................AAGGGACGTTGAGTTAAGTAGTTAT................................................................ 25 0 20 0.40 8 6 0 2
.....................................................................................................................................................................GGACGTTGAGTTAAGTAGTTAT................................................................ 22 0 20 0.20 4 4 0 0
.................................................................................................................................................................AAAGGGACGTTGAGTTAAGTAGTTATG............................................................... 27 0 20 0.10 2 0 2 0
................................................................................................................................................................GAAAGGGACGTTGAGTTAAGTA..................................................................... 22 0 20 0.10 2 0 0 2
..................................................................................................................................................................................AGTAGTTATGTGTTTGTTTTGTAAT................................................ 25 0 20 0.10 2 0 2 0
.........................................................................................................................................................................GTTGAGTTAAGTAGTTAT................................................................ 18 0 20 0.10 2 0 2 0
................................................................................................CGTTCCGGTTTCAATGACAT....................................................................................................................................... 20 3 13 0.08 1 1 0 0
.....................................................................................................................................................................................AGTTATGTGTTTGTTTTG.................................................... 18 0 20 0.05 1 0 1 0
..................................................................................................................................................................AAGGGACGTTGAGTTAAGTAGTT.................................................................. 23 0 20 0.05 1 1 0 0
..............................................................................................................................................................................GTTAAGTAGTTATGTGTTTGTTTTGT................................................... 26 0 20 0.05 1 0 1 0
..................................................................................................................................................................AAGGGACGTTGAGTTAAGTA..................................................................... 20 0 20 0.05 1 0 0 1
.........................................................................................................................................................................GTTGAGTTAAGTAGTTATG............................................................... 19 0 20 0.05 1 0 1 0
..................................................................................TCTTCGATTGAAGCCGTTACG.................................................................................................................................................... 21 0 20 0.05 1 0 1 0
..........................................................................................................................................................................TTGAGTTAAGTAGTTATGTGTTTGT........................................................ 25 0 20 0.05 1 1 0 0
................................................................................................................................................................GAAAGGGACGTTGAGTTAAGTAGTTAT................................................................ 27 0 20 0.05 1 1 0 0
...................................................................................................................................................................AGGGACGTTGAGTTAAGTAG.................................................................... 20 0 20 0.05 1 1 0 0
..................................................................................................................................................................AAGGTACGTTGAGTTAAGTAGTTAT................................................................ 25 1 20 0.05 1 0 1 0
....................................................................................................................................................................GGGACGTTGAGTTAAGTAG.................................................................... 19 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004512:1990172-1990422 - dwi_797 AAATGAAGAAGACTGAGGCAATGAAGCTTTTCCAAGAAGTAAAAGAAGTAGTAAGTACTAAAAATATATCTAAATGGAAGCTAGAAGCTAACTTCGGCAATGCCAAAGTTAATATACCCCTTGCAGTCCTTTGCAATAATTTGTTTACATTTTGAAAATTCTTTCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAATGAAGAAGACTGAGGCAATGAAGCTTTTCCAAGAAGTAAAAGAAGTAGTAAGTACTAAAAATATATCTAAATGGAAGCTAGAAGCTAACTTCGGCAATGCCAAAGTTAATATACCCCTTGCAGTCCTTTGCAATAATTTGTTTACATTTTGAAAATTCTTTCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..............................................................................................................................................................TTCTTTCCCTGCAACTCAATTCA......................................................................23200.05101000
...................................................................................................................................................................TCCCTGCAACTCAATTCATCAATACA..............................................................26200.05101000
...............................................................................................................................................................TCTTTCCCTGCAACTCAATTCATC....................................................................24200.05101000

Generated: 05/17/2015 at 11:57 PM