ID:

dwi_796

 Coordinate:

scf2_1100000004512:1990059-1990209 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

Flybase annnotation

exon [dwil_GLEANR_2109:2]; CDS [Dwil\GK19478-cds]; intron [Dwil\GK19478-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTCCCTAAGCAAACCACGCATACACATACAGTGTAGCGTTGTGTTGGTGTGTGTATGCATGTGTAGCGCTTATACCGATTTATGTATATTGACTAATTTTTTTCTTTTAATTTCAGGTGGTCGAACAAAACAGGCTTATGGTGGAACAAAACAGGCTTATGCACCG
**************************************************...........((((((.............((((......(((((..((((.((((((((((((....((((.....)))))))))))))))).)).))...)))))....)))).....)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
.................................................................................................................................TCGTGTGTGTATCCATGTGTAGCG.................................................................................................. 24 2 1 1.00 1 1
TCCCTGCAACTCAATTCATCAATACA................................................................................................................................................................................................................................. 26 0 20 0.05 1 1

Anti-sense strand reads

AGGGACGTTGAGTTAAGTAGTTATGTGTTTGTTTTGTAATTTTAATAATGAGAAAAAGGATGTTATAAAAGAAGAAGAAGCTAGTAAGGGATTCGTTTGGTGCGTATGTGTATGTCACATCGCAACACAACCACACACATACGTACACATCGCGAATATGGCTAAATACATATAACTGATTAAAAAAAGAAAATTAAAGTCCACCAGCTTGTTTTGTCCGAATACCACCTTGTTTTGTCCGAATACGTGGC
**************************************************...........((((((.............((((......(((((..((((.((((((((((((....((((.....)))))))))))))))).)).))...)))))....)))).....)))))).........................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
AGGGACGTTGAGTTAAGTAGTTAT................................................................................................................................................................................................................................... 24 0 20 0.55 11 11 0
..GGACGTTGAGTTAAGTAGTTAT................................................................................................................................................................................................................................... 22 0 20 0.20 4 4 0
.....................................................................AGAAGAAGAAGCTAGTAAGGGAATCGT........................................................................................................................................................... 27 1 7 0.14 1 0 1
...............AGTAGTTATGTGTTTGTTTTGTAAT................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2
......GTTGAGTTAAGTAGTTAT................................................................................................................................................................................................................................... 18 0 20 0.10 2 0 2
..................AGTTATGTGTTTGTTTTG....................................................................................................................................................................................................................... 18 0 20 0.05 1 0 1
AGGGACGTTGAGTTAAGTAG....................................................................................................................................................................................................................................... 20 0 20 0.05 1 1 0
...........GTTAAGTAGTTATGTGTTTGTTTTGT...................................................................................................................................................................................................................... 26 0 20 0.05 1 0 1
......GTTGAGTTAAGTAGTTATG.................................................................................................................................................................................................................................. 19 0 20 0.05 1 0 1
.GGGACGTTGAGTTAAGTAG....................................................................................................................................................................................................................................... 19 0 20 0.05 1 0 1
.......TTGAGTTAAGTAGTTATGTGTTTGT........................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004512:1990009-1990259 - dwi_796 TCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTCCCTAAGCAAACCACGCATACACATACAGTGTAGCGTTGTGTTGGTGTGTGTATGCATGTGTAGCGCTTATACCGATTTATGTATATTGACTAATTTTTTTCTTTTAATTTCAGGTGGTCGAACAAAACAGGCTTATGGTGGAACAAAACAGGCTTATGCACCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TCCCTGCAACTCAATTCATCAATACACAAACAAAACATTAAAATTATTACTCTTTTTCCTACAATATTTTCTTCTTCTTCGATCATTCCCTAAGCAAACCACGCATACACATACAGTGTAGCGTTGTGTTGGTGTGTGTATGCATGTGTAGCGCTTATACCGATTTATGTATATTGACTAATTTTTTTCTTTTAATTTCAGGTGGTCGAACAAAACAGGCTTATGGTGGAACAAAACAGGCTTATGCACCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
TCCCTGCAACTCAATTCATCAATACA.................................................................................................................................................................................................................................26200.05101000

Generated: 05/17/2015 at 11:53 PM