ID:

dwi_756

 Coordinate:

scf2_1100000004511:11385405-11385555 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -4.7 -4.7 -4.4

Flybase annnotation

CDS [Dwil\GK16540-cds]; exon [dwil_GLEANR_16911:4]; intron [Dwil\GK16540-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTTTTAGTTTTTTTAACCGTTCAAAAGGGCTTGCCTGGAATGCCTTCATATTTTTTACAAGGGTTATCCGAATCTATAAGGGAATCACAACGGTACTTTATTCCTCCTGTGTCCACAATTCTTTTTATAAGTTTCCTGGTAAGCTTCCCAATTTTTCTTTTATGGTGAACAGCGAAATTTATAATCCCACTTCATGTTTAGGTTAATATAATATCTTTTTTTGGATTTCAACGCATTGACGGCTATCTACG
************************************************************************************.............((.......((....(((.....(((.....))).....)))..))......))**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V117
male body		 V119
head
....TAGTTTTTTTAACCGTTCAAAAGGGCT............................................................................................................................................................................................................................ 27 0 1 7.00 7 1 6 0 0 0
...TTAGTTTTTTTAACCGTTCAAAAGGGCT............................................................................................................................................................................................................................ 28 0 1 4.00 4 1 3 0 0 0
....................................................................................TCACAACGGTACTTTATTCCTCCTG.............................................................................................................................................. 25 0 1 2.00 2 1 1 0 0 0
...........................................................................ATAAGGGAATCACAACGGTAC........................................................................................................................................................... 21 0 1 2.00 2 0 2 0 0 0
.................CGTTCAAAAGGGCTTGCCTGGAATG................................................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0
...................................................................................................................................TTTCCTGGTAAGCTTCCCAA.................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.................CGTTCAAAAGGGCTTGCCTGGA.................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.................................................................................................TTATTCCTCCTGTGTCCACA...................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.............TAACCGTTCAAAAGGGCTTGCCTGGAA................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0
..................GTTCAAAAGGGCTTGCCTG...................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
.........................................................................................................................................................................................................................TTATTGGATGTCAACGCTTTGAC........... 23 3 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................................ATTTCAACGCATTGACGGCTAT..... 22 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................GTTTCCTGGTAAGCTTCCCA..................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
.........TTTTTAACCGTTCAAAAGG............................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
..........................................................................TATAAGGGAATCACAACGGTAC........................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0
..............AACCGTTCAAAAGGGCTTGCCTGG..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0
............................................................................................GTACTTTATTCCTCCTGTGTC.......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0
...................TTCAAAAGGGCTTGCCTGGAATGCCT.............................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0
........................AAGGGCTTGCCTGGAATGCCT.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................TTCTTTTATGGTGAACAGCGA............................................................................ 21 0 1 1.00 1 1 0 0 0 0
..............................TTGCCTGGAATGCCTTCA........................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
........................................................................................AACGGTACTTTATTCCTCCTGTGTCC......................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
..................................................................TCCGAATCTATAAGGGAATCACAACGG.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
............................................................................TAAGGGAATCACAACGGTACT.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.....................CAAAAGGGCTTGCCTGGAATGC................................................................................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0
..TTTAGTTTTTTTAACCGTTCAAAAGGGCT............................................................................................................................................................................................................................ 29 0 1 1.00 1 0 1 0 0 0
.................................................................................................................................................................................TTTATAATCCCACTTCATGTT..................................................... 21 0 1 1.00 1 0 0 0 1 0
..............................................................................................ACTTTATTCCTCCTGTGTCCA........................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.....................CAAAGGGGCTTGCCTGGAATG................................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 1 0
..................................................................................................TATTCCTCCTGTGTCCACAATTCTTTT.............................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
................................................................TATCCGAATCTATAAGGGAAT...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.............TAACCGTTCAAAAGGGCTTGC......................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.........................................................................CTATAAGGGAATCACAACGGTA............................................................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0
....................TCAAAAGGGCTTGCCTGGAATGCCT.............................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0
.........................................................................CTATAAGGGAATCACAACGG.............................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................TCAACAGCGTAATTTACAATCC................................................................ 22 3 2 0.50 1 0 0 0 0 1
..............................................................................................................................................................................................................................AGCTTTCAACGCATTGAC........... 18 2 14 0.07 1 1 0 0 0 0
.................................................................................................................................................................................................................................GTTCAACGAATTGACGGCTG...... 20 3 15 0.07 1 1 0 0 0 0

Anti-sense strand reads

CAAAATCAAAAAAATTGGCAAGTTTTCCCGAACGGACCTTACGGAAGTATAAAAAATGTTCCCAATAGGCTTAGATATTCCCTTAGTGTTGCCATGAAATAAGGAGGACACAGGTGTTAAGAAAAATATTCAAAGGACCATTCGAAGGGTTAAAAAGAAAATACCACTTGTCGCTTTAAATATTAGGGTGAAGTACAAATCCAATTATATTATAGAAAAAAACCTAAAGTTGCGTAACTGCCGATAGATGC
****************************************************************************************************.............((.......((....(((.....(((.....))).....)))..))......))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
..................................................................................................................................................................................AATATTAGGGTGAAGTACAAA.................................................... 21 0 1 1.00 1 1 0 0
........................................................TGTTCCCAATAGGCTTAGATA.............................................................................................................................................................................. 21 0 1 1.00 1 0 1 0
..............................................................................TCCCTTAGTGTTGCCATGAGAT....................................................................................................................................................... 22 1 1 1.00 1 1 0 0
...................................................................................................................................................................CCACTTGTCGCTTTAAATGT.................................................................... 20 1 1 1.00 1 1 0 0
......................................................................................................................................GGACCGTTCGGAGGGTTAAAA................................................................................................ 21 2 1 1.00 1 1 0 0
..................................................................................................TTAAGGAGGACACAGGTGTT..................................................................................................................................... 20 1 1 1.00 1 1 0 0
.........................................................GTTCCCAATAGGCTTAGATAT............................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
......................................................................................................................................................................................................................................TGCGTAACTGCCGATAGATGC 21 0 1 1.00 1 1 0 0
......CAAAAAAATTGGCAAGTAT.................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 1
.......................................................ATGTTCCCAATAGGCTTAGA................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0
.....................................................................................................................................................................................................................................TTGCGTAACTGCCGATAGATG. 21 0 1 1.00 1 1 0 0
....................................................................................................................................................................................TATTAGGGTGAAGTACAAAT................................................... 20 0 1 1.00 1 1 0 0
...............................ACGGACCTTACGGAAGTATAA....................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0
.............................................................................................................................................................AAAATACCACTTGTCGCTTT.......................................................................... 20 0 1 1.00 1 1 0 0
.............................................................................TTCCCTTAGTGTTGCCATGA.......................................................................................................................................................... 20 0 1 1.00 1 1 0 0
.............................GAACGGACCTTACGGAAG............................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0
.....................................................................................................AGGAGGACACAGGTGTTAAG.................................................................................................................................. 20 0 1 1.00 1 1 0 0
................................................................................................................................................................ATACCACTTGTCGCTTTAAAT...................................................................... 21 0 1 1.00 1 0 1 0
...........................................................................................................................................ATTCGAAGGGTTAAAAAGAAA........................................................................................... 21 0 1 1.00 1 1 0 0
..........................................................................ATATTCCCTTAGTGTTGCCAT............................................................................................................................................................ 21 0 1 1.00 1 1 0 0
..............................................................................................................................................................................................................................ACGAAAGTTGCGTAACTG........... 18 2 9 0.11 1 0 0 1
.................................GCACATTACGGAAGTAGAA....................................................................................................................................................................................................... 19 3 20 0.10 2 0 2 0
...............................................................................................................................................................AAAACCTCTTGTCGCTTTA......................................................................... 19 2 11 0.09 1 1 0 0
.....ACAAAAAAATTGGCAAGTAT.................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 0 1
.......AAAAAAATTGGCAAGTAT.................................................................................................................................................................................................................................. 18 1 20 0.05 1 0 0 1
...........................................................................................................................................................................................................................AGCCCCAAAGTTGCGTAA.............. 18 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:11385355-11385605 - dwi_756 GTTTTAGTTTTTTTAACCGTTCAAAAGGGCTTGCCTGGAATGCCTTCATATTTTTTACAAG-------------------------------------------------------------------------------------GGTTATCCGAATCTATAAGGGAATCACAACGGTACTTTATTCCTCCTGTGTCCACAATTCTTTTTATAAGTTTCCTGGTAAGCTTC-----------------CC-----------AATTTTTC-----------------------TTTTATGGTGAA------------CAG---CGAA---ATTTATAATCCCAC-----------T-TCA-TGTTTAGGTTAATATAATATCTTTTTTTGGATTTCAACGCATTG------ACGGCTATCTACG
droVir3 scaffold_10322:366244-366507 + ATTCTAGTCTCGCTGACTGTGCAAAAGGGGCTGCCGGGAATGCCTTCATATTTTCAGCAGG-------------------------------------------------------------------------------------GTCTCACGGAATCAATTCGAGATTCCCAACGTTACTTCATACCACCAGTATCCACACTATTAGGTCTTAGTTTCCTTGTGAGTCAA-----------------TG---------------CAAT-----------------------AAAAAGAAGATAAAT-TATT-----TGAAGACAAAATA-------------TATTAATAATAATCGT-TTTTTAGGCAATGATAATATCGTTCTTTGGCTTTCAACGAATAAAAACTGATGGTTACCTGCG
droMoj3 scaffold_6680:2402886-2403028 + ATTCTAGTCACGCTGACGGTGCAAAAGGGCTTGCCGGGCATGCCCTCATACTTCCAAAAGG-------------------------------------------------------------------------------------GACTCACGGAATCCATTAGAGAATCGCAACGCTATTTTATACCACCCGTTTCTACTCTATTGGGGCTTAGCTTTCTGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:160272-160526 - ATACTAGTCTCGTTAACCGTGCAAAAAGGTTTGCCTGGCATGCCGTCATATTTTTTGCAGG-------------------------------------------------------------------------------------GCCTAACCGAATCCATTCGTGAATCCCAGCGATACTTTATTCCACCCGTTTCGACCATATTAGGTCTTAGTTTTCTTGTAAGTCAACGCACTAAAATCAATAGAG---------------CTCA-----------------------ATATACAAAAATT--------------------------------------CATTAATATAA---AT-TAACTAGGTTATGGTTATATCATTTTTTGGTTTTCAACGCATTAAATCTGTTGGTTACT----
dp5 XR_group8:1385613-1385855 - ACTTTGGTTACGCTTACGGTGCAGAAGGGATTGCCGGGGATGCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCCGAGAATCGCAGCGCTACTTCATACCTCCTGTATCCACAATTCTAATTTGTAGTTTTTTGGTAAGCTAC-----------------AG---------------CTGC-----------------------TTATGGAGGGATTAC-CATTATATAC----------------------GCT-----------G-ACATCTTCCAGGTTAACGTAATATCGTTCTTCGGCTTTCAACGCATTA------ATGGCTATACAAA
droPer2 scaffold_32:90310-90552 + ACTTTGGTTACGCTTACGGTGCAGAAGGGATTGCCGGGAATGCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCCGAGAATCACAGCGCTACTTCATACCTCCTGTATCCACAATTCTAATTTGTAGTTTTTTGGTAAGCTAC-----------------AG---------------CTGC-----------------------TTATGGAGGGATTAC-CATTATATAC----------------------GCT-----------G-ACATCTTCCAGGTTAACGTAATATCGTTCTTCGGCTTTCAACGCATTA------ATGGCTATACAAA
droAna3 scaffold_13337:2189475-2189722 + TCCATAGTGGCGCTCACGGTCCAAAAAGGTCTGCCCGGCATGCCCTCGTACTTCCTGCAGG-------------------------------------------------------------------------------------GACTCACAGAGTCCATAAGGGATTCACAGCGTTACTTTATACCTCCGGTGTCCACCATCCTGTTTCTCAGCTTTTTGGTTAGTGTC-----------------CATCCTTG-----------AC-----------------------TCCC------AC------------CTG---TGGAAGTATCTAAAGGATTAT-----------T-CTA-TTTCCAGATAAACATATTATCCTTCTTCGGGTTCCAACGCGTGA------ATGGCTATACTCT
droBip1 scf7180000396390:42706-42954 + TCCATAGTGGCGCTCACGGTCCAAAAAGGGCTGCCAGGCATGCCCTCGTACTTCCTGCAGG-------------------------------------------------------------------------------------GACTGACAGAGTCCATACGTGACTCGCAGCGCTACTTTATACCTCCAGTTTCCACCATACTGTTCCTCAGCTTTTTGGTAAATGTC-----------------CATCCTTG---------------------------------------TGAAAGTAC------------CTG---TGAAAGTATCTAAACGATTAT-----------T-CCA-TTCCCAGATAAACATATTGTCCTTCTTCGGTTTTCAACGCGTAA------AAGGCTACGAACT
droKik1 scf7180000302510:792542-792786 + ACCATAGTGGCCATGACGGTCCAAAAGGGACTGCCAGGAATGCCCTCATACTTCCTGCAGG-------------------------------------------------------------------------------------GTCTCACGGAGTCTATACGTGACTCACAGCGTTACTTCATACCTCCAGTGTCCACCGTTTTGTTTTTAAGTTTCCTGGTAAGTTTA-----------------TC---------------TTGAGTAA--------GAGCG-------------------T-CAACTTTAACAG------------CTTAG----CGT-----------TATGT-TCTTTAGATCAATATCATATCATTCTTTGGTTTCCAACGCATTA------ACGGATATGTCAA
droFic1 scf7180000454105:61694-61987 + ACAATAGTGGCGCTAACTGTTCAAAAAGGATTGCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGGCTAAAAC----A---AAAGTAATTAAAAC------A--AAACC---------AAAGGGTTAAACAAATTTTATTTAAAGGATTGACGGAATCTATACGTGACTCACAACGTTACTTTATACCTCCTGTTTCAACGGTACTTTTCCTAAGTTTTTTGGTATGCTAG-----------------TA-----------------GATAAA----ATAAT-----AGC--T------------T-TTATTGTAACAG---------------------CCA-----------T-ATT-CTTTTAGATTAACGTTATTTCTTTCTTTGGATTTCAACGGTTAA------ACGGA--------
droEle1 scf7180000491249:21917-22227 + ACAATAGTTGCGCTAACAGTTCAAAAGGGATTACCAGGAATGCCGTCTTACTTTCTCCAAGGCAAGGTTA---CCTTTAT-------------CTTTACCTTAATAATTTAAGTTAT--TAACTAAATAATATTTTTTATTTAAAGGTCTCACGGAATCAATAAGAGACTCGCAACGCTACTTTATACCACCAGTTTCCACGGTCCTTTTTCTTAGTTTTTTGGTAAGCTAA-----------------TT---------------CAGCCAAA--------CTACATCTCA--------------T-GTATTTCACTCG---------------------CCG-----------T-ACA-TCTTCAGCTAAACATCATATCATTCTTTGGATTTCAACGTATAA------ATAGATACGAAAA
droRho1 scf7180000777885:109644-109949 - ACAATAGTGGCGCTAACAGCTCAAAAGGGATTACCTGGAATGCCATCTTACTTTATCCAAGGCAAGACCA--CT----ATA-AAAAT---------------ATTAATTTAATAAAT--AAACAAAATAATTTTTTATATTTAAAGGCCTCACGGAATCTATAAGAGACTCACAACGTTACTTTATTCCACCAGTTTCCACGATACTTTTTCTTAGTTTCTTGGTAAGCTAA-----------------TT---------------CAGAAAAA--------AAACA-GTTTC------------TAA-TATTTTACTAT---------------------CCG-----------T-ACA-TCTTCAGATTAACATAATATCATTCTTCGGATTTCAACGTATAA------ACGGATACGAAAA
droBia1 scf7180000300910:97462-97763 - ACAATAGTTGCCCTAACAGTCCAAAAGGGTTTGCCAGGAATGCCTTCTTACTTTCTGCAAGGCAAGTCAATGGC----A---ATAATCA----ACCAATTTTAATAATT---------------AAATATAATAATCTATTTAAAGGCCTGACGGAATCTATACGAGACTCACAACGTTACTTTATTCCTCCGGTTTCCACAATACTGTTTCTTAGTTTCTTGGTAAGTCAT-----------------TT---------------TGGGCTAC--------AAAGA-ATT--------------CCA-TATTTTACCAG---------------------CCC-----------T-ATA-TCCTCAGATTAACATTATATCATTCTTCGGATTTCAACGTATGA------ATGGATACGAAAA
droTak1 scf7180000415208:65974-66279 - ACTATAGTTGCGTTAACAGTTCAAAAGGGTTTGCCAGGAATGCCATCCTACTTTCTGCAAGGCAAGTTAATAGC----A---ACAAC---------------TATACTAAATAGCATCCAATTAAAATATTATTTTTCATTTGAAGGCCTCACGGAATCTATACGAGACTCACAGCGTTATTTTATACCTCCAGTTTCCACGATTCTTTTTCTTAGTTTCTTGGTAAGAGAA-----------------TT---------------CAGGCATATAAAAT--------AATA--------------T-AT-TTTTACCAT---------------------GTT-----------T-ACA-TCCTTAGATTAACATCATATCATTCTTCGGATTTCAACGTATAA------ACGGGTACGAAAA
droEug1 scf7180000409184:88866-89175 - GCAATAGTTTCACTAACCATTCAAAAGGGATTGCCAGGAATGCCTTCTTACTTCCTGCAAGGCAAGTTTATAGCCATTAT-------------ACTAAATTTGAAAATTTA---TTT--TAAAAAAATTTTATATATTATATCTAGGCCTCACGGAATCCATACGAGACTCACAACGTTACTTCATACCACCAGTTTCAACTATACTTTTTCTTAGTTTCTTGGTAAGCTTA-----------------TA---------------AGGACTTC--------TAAAT-GTTA--------------T-TTATTTTACTAG---------------------TCT-----------T-ACA-TCCTTAGATAAACATAATATCTTTCTTCGGATTTCAACGTCTTA------ACGGGTACGAAAA
dm3 chr3L:249282-249581 + ACAATAGTTGCACTAACTGTTCAAAAAGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTTATTGAC----T------TT---------------AATAGTTAAAAGTAT--AAGTAGTAACATATGTATTATTTAAAGGCCTAACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCTGTTT--------------------------T------------TTG-TTTTATGC-AA---------------------TTG-----------T-ACA-TTCTTAGCTTAACATCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCTACGCCAA
droSim2 3l:219674-219990 + ACAATAGTTGCATTAACTGTTCAAAAGGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----AGA-ACAAT---------------AATACTTTAGAGCAT--AAGTAATAACAGGTGTATTATTTAAAGGCCTCACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCAGTTT--------------------------T------------TTG-TTTTATGC-TA---------------------ATGCTGTAATAATGTACGA-TTATTAGATTAACATCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCTACGCCAA
droSec2 scaffold_2:276727-277043 + ACAATAGTTGCATTAACTGTTCAAAAGGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----AGA-ACAAT---------------TATACTTTAGAGCAT--AAGTAATAACAGGTGTATTATTTAAAGGCCTCACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCAGTTT--------------------------T------------TTG-TTTTATGC-TA---------------------ATGTTGTAATAATGGACGA-TTATTAGATTAATATAATATCGTTCTTCGGATTTCAACGTATAA------GCGGATACGCCAA
droYak3 3L:227916-228221 + ACAATAGTTGCACTCACTGTTCAAAAGGGGCTGCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----GGAAAGAAT---------------AATATTCTAAAATAC--AACTAATAATAGATGTATTACTTAAAGGTCTCACGGAATCCATACGAGATTCCCAGCGTTACTTTATTCCCCCAGTGTCTACTATACTTTTCCTAAGTTTTTTGGTAAGCAAT-----------------GT---------------TTTC-----------------------TACTTTTCTGTCTTG-TTTTATAC-AA---------------------CCG-----------T-ACA-TTCTCAGCTTAACATCATATCGTTCTTCGGGTTTCAACGAATAA------GCGGGTACATCAA
droEre2 scaffold_4784:238041-238338 + ACAATAGTCGCACTTACTGTTCAAAAGGGATTGCCTGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----GGAAAGAAT---------------AATAATCCAGAATGT--AACTAATAATAGATGTATTATTTAAAGGCCTCACGGAATCCATACGAGACTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTCAGTTTTTTGGTAAGCACT-----------------TT--TTCCTACCAGTTT--------------------------T------------TGG-TTTTCTGC-AA---------------------CTC-----------T-ACA-TTCTTAGATTAACGTCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCGA------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GTTTTAGTTTTTTTAACCGTTCAAAAGGGCTTGCCTGGAATGCCTTCATATTTTTTACAAG-------------------------------------------------------------------------------------GGTTATCCGAATCTATAAGGGAATCACAACGGTACTTTATTCCTCCTGTGTCCACAATTCTTTTTATAAGTTTCCTGGTAAGCTTC-----------------CC-----------AATTTTTC-----------------------TTTTATGGTGAA------------CAG---CGAA---ATTTATAATCCCAC-----------T-TCA-TGTTTAGGTTAATATAATATCTTTTTTTGGATTTCAACGCATTG------ACGGCTATCTACGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....TAGTTTTTTTAACCGTTCAAAAGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2717.00761000
...TTAGTTTTTTTAACCGTTCAAAAGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2814.00431000
.........................................................................................................................................................................TCACAACGGTACTTTATTCCTCCTG......................................................................................................................................................................................................................................2512.00211000
................................................................................................................................................................ATAAGGGAATCACAACGGTAC...................................................................................................................................................................................................................................................2112.00220000
.................CGTTCAAAAGGGCTTGCCTGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
........................................................................................................................................................................................................................TTTCCTGGTAAGCTTC-----------------CC-----------AA................................................................................................................................................................2011.00101000
.................CGTTCAAAAGGGCTTGCCTGGA.................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
......................................................................................................................................................................................TTATTCCTCCTGTGTCCACA..............................................................................................................................................................................................................................2011.00101000
.............TAACCGTTCAAAAGGGCTTGCCTGGAA................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
..................GTTCAAAAGGGCTTGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAACGCATTG------ACGGCTAT.....2211.00101000
.......................................................................................................................................................................................................................GTTTCCTGGTAAGCTTC-----------------CC-----------A.................................................................................................................................................................2011.00101000
.........TTTTTAACCGTTCAAAAGG............................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...............................................................................................................................................................TATAAGGGAATCACAACGGTAC...................................................................................................................................................................................................................................................2211.00100100
..............AACCGTTCAAAAGGGCTTGCCTGG..................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
.................................................................................................................................................................................GTACTTTATTCCTCCTGTGTC..................................................................................................................................................................................................................................2111.00100010
...................TTCAAAAGGGCTTGCCTGGAATGCCT...........................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
........................AAGGGCTTGCCTGGAATGCCT...........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
...........................................................................................................................................................................................................................................................................TTC-----------------------TTTTATGGTGAA------------CAG---CGA..................................................................................................2111.00101000
..............................TTGCCTGGAATGCCTTCA........................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
.............................................................................................................................................................................AACGGTACTTTATTCCTCCTGTGTCC.................................................................................................................................................................................................................................2611.00101000
.......................................................................................................................................................TCCGAATCTATAAGGGAATCACAACGG......................................................................................................................................................................................................................................................2711.00101000
.................................................................................................................................................................TAAGGGAATCACAACGGTACT..................................................................................................................................................................................................................................................2111.00101000
.....................CAAAAGGGCTTGCCTGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..TTTAGTTTTTTTAACCGTTCAAAAGGGCT.........................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
...........................................................................................................................................................................................................................................................................................................................................TTTATAATCCCAC-----------T-TCA-TGTT...........................................................2111.00100100
...................................................................................................................................................................................ACTTTATTCCTCCTGTGTCCA................................................................................................................................................................................................................................2111.00101000
.......................................................................................................................................................................................TATTCCTCCTGTGTCCACAATTCTTTT......................................................................................................................................................................................................................2711.00101000
.....................................................................................................................................................TATCCGAATCTATAAGGGAAT..............................................................................................................................................................................................................................................................2111.00101000
.............TAACCGTTCAAAAGGGCTTGC......................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................CTATAAGGGAATCACAACGGTA....................................................................................................................................................................................................................................................2211.00100100
....................TCAAAAGGGCTTGCCTGGAATGCCT...........................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..............................................................................................................................................................CTATAAGGGAATCACAACGG......................................................................................................................................................................................................................................................2011.00100010
droVir3
ATTCTAGTCTCGCTGACTGTGCAAAAGGGGCTGCCGGGAATGCCTTCATATTTTCAGCAGG-------------------------------------------------------------------------------------GTCTCACGGAATCAATTCGAGATTCCCAACGTTACTTCATACCACCAGTATCCACACTATTAGGTCTTAGTTTCCTTGTGAGTCAA-----------------TG---------------CAAT-----------------------AAAAAGAAGATAAAT-TATT-----TGAAGACAAAATA-------------TATTAATAATAATCGT-TTTTTAGGCAATGATAATATCGTTCTTTGGCTTTCAACGAATAAAAACTGATGGTTACCTGCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................AAGGGGCTGCCGGGAATGCCT...........................................................................................................................................................................................................................................................................................................................................................................................2114.004400000000000000000000000000000000000000000000000000000000000000
..........CGCTGACTGTGCAAAAGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................2013.003011000000000000000000000000001000000000000000000000000000000000
.............TGACTGTGCAAAAGGGGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................2113.003000001000000000000001000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TAGGCAATGATAATATCGTTC......................................2113.003000000000000000000000000002000010000000000000000000000000000000
......................AAAAGGGGCTGCCGGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000000100
................................................TATTTTCAGCAGG-------------------------------------------------------------------------------------GTCTCACG..............................................................................................................................................................................................................................................................................2112.002002000000000000000000000000000000000000000000000000000000000000
...........................................CTTCATATTTTCAGCAGG-------------------------------------------------------------------------------------GT....................................................................................................................................................................................................................................................................................2012.002200000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................CCAGTATCCACACTATTAGGT.....................................................................................................................................................................................................................2112.002000000000000000000000000101000000000000000000000000000000000000
..................GTGCAAAAGGGGCTGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................2012.002002000000000000000000000000000000000000000000000000000000000000
..........................................CCTTCATATTTTCAGCAGG-------------------------------------------------------------------------------------GT....................................................................................................................................................................................................................................................................................2112.002000000000000000100000000000000000100000000000000000000000000000
.........TCGCTGACTGTGCAAAAGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000100100000000000000000000000000000000
...............................................................................................................................................................................CGTTACTTCATACCACCAGTA....................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................AGGGGCTGCCGGGAATGCCTT..........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
........CTCGCTGACTGTGCAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................TCAGCAGG-------------------------------------------------------------------------------------GTCTCACGGAATC.........................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..................................................TTTTCAGCAGG-------------------------------------------------------------------------------------GTCTCACGG.............................................................................................................................................................................................................................................................................2011.001000001000000000000000000000000000000000000000000000000000000000
....................................................TTCAGCAGG-------------------------------------------------------------------------------------GTCTCACGGA............................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AGTATCCACACTATTAGGTCT...................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GTATCCACACTATTAGGTCTT..................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TCCACACTATTAGGTCTTAGTTTCC...........................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................TGCAAAAGGGGCTGCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................TTACTTCATACCACCAGTATC..................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.............TGACTGTGCAAAAGGGGCTGCCGGGAA................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAACTGATGGTTACCT...2111.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................GTCTCACGGAATCAATTCGA..................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..................GTGCAAAAGGGGCTGCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................CAACGTTACTTCATACCACC........................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..........CGCTGACTGTGCAAAAGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TTCATACCACCAGTATCCACA..............................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...................................................TTTCAGCAGG-------------------------------------------------------------------------------------GTCTCACGG.............................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
....TAGTCTCGCTGACTGTGCAAAAGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
.............TGACTGTGCAAAAGGGGCTGCCGGGA.................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................GCAAAAGGGGCTGCCGGG..................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
................CTGTGCAAAAGGGGCTGCCGG...................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CCCAACGTTACTTCATACCACCAGTA....................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
............CTGACTGTGCAAAAGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000000000000000000000000000000000000000000000000000000000000
........................................TGCCTTCATATTTTCAGCAGG-------------------------------------------------------------------------------------GTC...................................................................................................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AAAAACTGATGGTTACCTGCG2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGAATAAAAACTGATG..........2111.001000000000000001000000000000000000000000000000000000000000000000
.........TCGCTGACTGTGCAAAAGGGGCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000100000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TCACGGAATCAATTCGAGATTC.............................................................................................................................................................................................................................................................2211.001000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................................TCAATTCGAGATTCCCAACGT......................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........GCTGACTGTGCAAAAGGGGCT........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000000000000000000000000000000000000000000000000000000000000
.................TGTGCAAAAGGGGCTGCCGGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................CCCAACGTTACTTCATACCACCAGTAT...................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................CTTAGTTTCCTTGTGAGTCAA-----------------...............................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.TTCTAGTCTCGCTGACTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................AGTTTCCTTGTGAGTCAA-----------------TG---------------..............................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TCCTTGTGAGTCAA-----------------TG---------------CA............................................................................................................................................................1811.001000000000000000000000100000000000000000000000000000000000000000
.........................................................CAGG-------------------------------------------------------------------------------------GTCTCACGGAATCAATT.....................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TGATAATATCGTTCTTTGGCT...............................2111.001001000000000000000000000000000000000000000000000000000000000000
....TAGTCTCGCTGACTGTGCAAAAGGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000100000000000000000000000000000000000000
..........CGCTGACTGTGCAAAAGGGGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010000000000000000000000000000000000000000000000000000000000
.......................AAAGGGGCTGCCGGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................TCGTTCTTTGGCTTTCAACGA.......................2111.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................ATCAATTCGAGATTCCCAACGT......................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ACACTATTAGGTCTTAGTTTCC...........................................................................................................................................................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.........TCGCTGACTGTGCAAAAGGG...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000100000000000000000000000
..................................................................................................................................................................TCGAGATTCCCAACGTTACTT.................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
..............................CTGCCGGGAATGCCTTCATAT.....................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000100000000000000000000000000000000
.............TGACTGTGCAAAAGGGGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
ATTCTAGTCACGCTGACGGTGCAAAAGGGCTTGCCGGGCATGCCCTCATACTTCCAAAAGG-------------------------------------------------------------------------------------GACTCACGGAATCCATTAGAGAATCGCAACGCTATTTTATACCACCCGTTTCTACTCTATTGGGGCTTAGCTTTCTGGTAAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........GCTGACGGTGCAAAAGGGCTT........................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....................CAAAAGGGCTTGCCGGGCATG..............................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
ATACTAGTCTCGTTAACCGTGCAAAAAGGTTTGCCTGGCATGCCGTCATATTTTTTGCAGG-------------------------------------------------------------------------------------GCCTAACCGAATCCATTCGTGAATCCCAGCGATACTTTATTCCACCCGTTTCGACCATATTAGGTCTTAGTTTTCTTGTAAGTCAACGCACTAAAATCAATAGAG---------------CTCA-----------------------ATATACAAAAATT--------------------------------------CATTAATATAA---AT-TAACTAGGTTATGGTTATATCATTTTTTGGTTTTCAACGCATTAAATCTGTTGGTTACT----SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................TGCAGG-------------------------------------------------------------------------------------GCCTAACCGAATCC........................................................................................................................................................................................................................................................................2011.00110
dp5
ACTTTGGTTACGCTTACGGTGCAGAAGGGATTGCCGGGGATGCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCCGAGAATCGCAGCGCTACTTCATACCTCCTGTATCCACAATTCTAATTTGTAGTTTTTTGGTAAGCTAC-----------------AG---------------CTGC-----------------------TTATGGAGGGATTAC-CATTATATAC----------------------GCT-----------G-ACATCTTCCAGGTTAACGTAATATCGTTCTTCGGCTTTCAACGCATTA------ATGGCTATACAAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................GTAATATCGTTCTTCGGCT...............................1912.0020110000000
..................................................................................................................................................................................................................................................................................................................................................................................TAACGTAATATCGTTCTTCGGCTTTCAAC.........................2912.0020200000000
....................................................................................................................................................................................................................................CTAC-----------------AG---------------CTGC-----------------------TTATGGAGGGA........................................................................................................................2112.0020000002000
...........................................................................................................................................................................................................................................................................................................................ATAC----------------------GCT-----------G-ACATCTTCCAGGT......................................................2112.0020200000000
..........................................................................................................................................................................................................................................................................................................................................................................................TATCGTTCTTCGGCTTTCAAC.........................2111.0010100000000
...............................................GTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTAC...............................................................................................................................................................................................................................................................................2111.0010100000000
.........................................GCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------G.....................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................AACGTAATATCGTTCTTCGGC................................2111.0010100000000
.................................................................................................................................................................................CTACTTCATACCTCCTGTATCCAC...............................................................................................................................................................................................................................2411.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................GTTAACGTAATATCGTTCTTCGGCTT..............................2611.0010100000000
............................................ATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCT..................................................................................................................................................................................................................................................................................2111.0010100000000
...................TGCAGAAGGGATTGCCGGGGA................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................TTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGA............................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................C-----------------AG---------------CTGC-----------------------TTATGGAGGGATTA.....................................................................................................................2111.0010100000000
..............................................CGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGA............................................................................................................................................................................................................................................................................2511.0010000100000
....TGGTTACGCTTACGGTGCAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................AACGTAATATCGTTCTTCGGCTT..............................2311.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCTTTCAACGCATTA------AT...........2111.0010100000000
....................................................................................................................................................CTTACGGAATCTATCCGAGAA...............................................................................................................................................................................................................................................................2111.0010100000000
...........................................................AG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCC....................................................................................................................................................................................................................................................................2011.0010100000000
......................AGAAGGGATTGCCGGGGATGC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................GATGCCATCGTACTTTCTGCA.............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................GTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGT............................................................................................................................................................................................................................................................................2411.0010000100000
...............................................................................................................................................................................................................................................................................................................ATTAC-CATTATATAC----------------------GCT-----------G-AC.................................................................2111.0010100000000
...................................................................................................................................................................................ACTTCATACCTCCTGTATCCA................................................................................................................................................................................................................................2111.0010100000000
........................................................GCAAG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCCGA..................................................................................................................................................................................................................................................................2511.0010100000000
.......TTACGCTTACGGTGCAGAAGG............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
ACTTTGGTTACGCTTACGGTGCA.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................................ATGCCATCGTACTTTCTGC..............................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCGGCTTTCAACGC.......................1911.0010010000000
......................AGAAGGGATTGCCGGGGATG..............................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................AATATCGTTCTTCGGCTT..............................1811.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................ACGTAATATCGTTCTTCGGCT...............................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................GTAATATCGTTCTTCGGCTTTC............................2211.0010100000000
..................................................CTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGA............................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCGGCTTTCAACGCATTA------ATGGC........2811.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTCTTCGGCTTTCAACGCAT.....................2011.0010100000000
droPer2
ACTTTGGTTACGCTTACGGTGCAGAAGGGATTGCCGGGAATGCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------GCCTTACGGAATCTATCCGAGAATCACAGCGCTACTTCATACCTCCTGTATCCACAATTCTAATTTGTAGTTTTTTGGTAAGCTAC-----------------AG---------------CTGC-----------------------TTATGGAGGGATTAC-CATTATATAC----------------------GCT-----------G-ACATCTTCCAGGTTAACGTAATATCGTTCTTCGGCTTTCAACGCATTA------ATGGCTATACAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCGGCTTTCAACG........................1815.005500000
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGCTTTCAACGCATTA------ATGGCT.......2612.002200000
......................................................................................................................................................................................................................................................................................................................................................................................GTAATATCGTTCTTCGGCT...............................1912.002200000
........................................TGCCATCGTACTTTCTGCAAG-------------------------------------------------------------------------------------......................................................................................................................................................................................................................................................................................2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................AATATCGTTCTTCGGCTT..............................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGCTTTCAACGCATTA------ATGGCC.......2611.001100000
ACTTTGGTTACGCTTACGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGCTTTCAACGCATTA------ATGGCTT......2711.001100000
droAna3
TCCATAGTGGCGCTCACGGTCCAAAAAGGTCTGCCCGGCATGCCCTCGTACTTCCTGCAGG-------------------------------------------------------------------------------------GACTCACAGAGTCCATAAGGGATTCACAGCGTTACTTTATACCTCCGGTGTCCACCATCCTGTTTCTCAGCTTTTTGGTTAGTGTC-----------------CATCCTTG-----------AC-----------------------TCCC------AC------------CTG---TGGAAGTATCTAAAGGATTAT-----------T-CTA-TTTCCAGATAAACATATTATCCTTCTTCGGGTTCCAACGCGTGA------ATGGCTATACTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................TTCGGGTTCCAACGCGTG....................1811.001100000
............................................................................................................................................................GTCCATAAGGGATTCACAGC........................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................ACGCGTGA------ATGGCTATACTCT2111.001100000
..............................CTGCCCGGCATGCCCTCGTA......................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGGTTCCAACGCGTGA------AT...........2211.001010000
...................................................................................................................................................................................ACTTTATACCTCCGGTGTCCACCATCCT.........................................................................................................................................................................................................................2811.001010000
...................................................................................................................................................ACTCACAGAGTCCATAAGGGATT..............................................................................................................................................................................................................................................................2311.001010000
droBip1
TCCATAGTGGCGCTCACGGTCCAAAAAGGGCTGCCAGGCATGCCCTCGTACTTCCTGCAGG-------------------------------------------------------------------------------------GACTGACAGAGTCCATACGTGACTCGCAGCGCTACTTTATACCTCCAGTTTCCACCATACTGTTCCTCAGCTTTTTGGTAAATGTC-----------------CATCCTTG---------------------------------------TGAAAGTAC------------CTG---TGAAAGTATCTAAACGATTAT-----------T-CCA-TTCCCAGATAAACATATTGTCCTTCTTCGGTTTTCAACGCGTAA------AAGGCTACGAACTSizeHit CountTotal NormTotal
No Reads
droKik1
ACCATAGTGGCCATGACGGTCCAAAAGGGACTGCCAGGAATGCCCTCATACTTCCTGCAGG-------------------------------------------------------------------------------------GTCTCACGGAGTCTATACGTGACTCACAGCGTTACTTCATACCTCCAGTGTCCACCGTTTTGTTTTTAAGTTTCCTGGTAAGTTTA-----------------TC---------------TTGAGTAA--------GAGCG-------------------T-CAACTTTAACAG------------CTTAG----CGT-----------TATGT-TCTTTAGATCAATATCATATCATTCTTTGGTTTCCAACGCATTA------ACGGATATGTCAASizeHit CountTotal NormTotal
No Reads
droFic1
ACAATAGTGGCGCTAACTGTTCAAAAAGGATTGCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGGCTAAAAC----A---AAAGTAATTAAAAC------A--AAACC---------AAAGGGTTAAACAAATTTTATTTAAAGGATTGACGGAATCTATACGTGACTCACAACGTTACTTTATACCTCCTGTTTCAACGGTACTTTTCCTAAGTTTTTTGGTATGCTAG-----------------TA-----------------GATAAA----ATAAT-----AGC--T------------T-TTATTGTAACAG---------------------CCA-----------T-ATT-CTTTTAGATTAACGTTATTTCTTTCTTTGGATTTCAACGGTTAA------ACGGA--------SizeHit CountTotal NormTotal
No Reads
droEle1
ACAATAGTTGCGCTAACAGTTCAAAAGGGATTACCAGGAATGCCGTCTTACTTTCTCCAAGGCAAGGTTA---CCTTTAT-------------CTTTACCTTAATAATTTAAGTTAT--TAACTAAATAATATTTTTTATTTAAAGGTCTCACGGAATCAATAAGAGACTCGCAACGCTACTTTATACCACCAGTTTCCACGGTCCTTTTTCTTAGTTTTTTGGTAAGCTAA-----------------TT---------------CAGCCAAA--------CTACATCTCA--------------T-GTATTTCACTCG---------------------CCG-----------T-ACA-TCTTCAGCTAAACATCATATCATTCTTTGGATTTCAACGTATAA------ATAGATACGAAAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAATAGTGGCGCTAACAGCTCAAAAGGGATTACCTGGAATGCCATCTTACTTTATCCAAGGCAAGACCA--CT----ATA-AAAAT---------------ATTAATTTAATAAAT--AAACAAAATAATTTTTTATATTTAAAGGCCTCACGGAATCTATAAGAGACTCACAACGTTACTTTATTCCACCAGTTTCCACGATACTTTTTCTTAGTTTCTTGGTAAGCTAA-----------------TT---------------CAGAAAAA--------AAACA-GTTTC------------TAA-TATTTTACTAT---------------------CCG-----------T-ACA-TCTTCAGATTAACATAATATCATTCTTCGGATTTCAACGTATAA------ACGGATACGAAAASizeHit CountTotal NormTotal
No Reads
droBia1
ACAATAGTTGCCCTAACAGTCCAAAAGGGTTTGCCAGGAATGCCTTCTTACTTTCTGCAAGGCAAGTCAATGGC----A---ATAATCA----ACCAATTTTAATAATT---------------AAATATAATAATCTATTTAAAGGCCTGACGGAATCTATACGAGACTCACAACGTTACTTTATTCCTCCGGTTTCCACAATACTGTTTCTTAGTTTCTTGGTAAGTCAT-----------------TT---------------TGGGCTAC--------AAAGA-ATT--------------CCA-TATTTTACCAG---------------------CCC-----------T-ATA-TCCTCAGATTAACATTATATCATTCTTCGGATTTCAACGTATGA------ATGGATACGAAAASizeHit CountTotal NormTotal
No Reads
droTak1
ACTATAGTTGCGTTAACAGTTCAAAAGGGTTTGCCAGGAATGCCATCCTACTTTCTGCAAGGCAAGTTAATAGC----A---ACAAC---------------TATACTAAATAGCATCCAATTAAAATATTATTTTTCATTTGAAGGCCTCACGGAATCTATACGAGACTCACAGCGTTATTTTATACCTCCAGTTTCCACGATTCTTTTTCTTAGTTTCTTGGTAAGAGAA-----------------TT---------------CAGGCATATAAAAT--------AATA--------------T-AT-TTTTACCAT---------------------GTT-----------T-ACA-TCCTTAGATTAACATCATATCATTCTTCGGATTTCAACGTATAA------ACGGGTACGAAAASizeHit CountTotal NormTotal
No Reads
droEug1
GCAATAGTTTCACTAACCATTCAAAAGGGATTGCCAGGAATGCCTTCTTACTTCCTGCAAGGCAAGTTTATAGCCATTAT-------------ACTAAATTTGAAAATTTA---TTT--TAAAAAAATTTTATATATTATATCTAGGCCTCACGGAATCCATACGAGACTCACAACGTTACTTCATACCACCAGTTTCAACTATACTTTTTCTTAGTTTCTTGGTAAGCTTA-----------------TA---------------AGGACTTC--------TAAAT-GTTA--------------T-TTATTTTACTAG---------------------TCT-----------T-ACA-TCCTTAGATAAACATAATATCTTTCTTCGGATTTCAACGTCTTA------ACGGGTACGAAAASizeHit CountTotal NormTotal
No Reads
dm3
ACAATAGTTGCACTAACTGTTCAAAAAGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTTATTGAC----T------TT---------------AATAGTTAAAAGTAT--AAGTAGTAACATATGTATTATTTAAAGGCCTAACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCTGTTT--------------------------T------------TTG-TTTTATGC-AA---------------------TTG-----------T-ACA-TTCTTAGCTTAACATCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCTACGCCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................CGGATTTCAACGTATAA------GCGG.........21113.001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................TATCGTTCTTCGGATTTCAAC.........................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCAAAAAGGACTCCCAGGAATGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
...............................................................................................................................................................................................................................GTAAGCACT-----------------TCTTTTCGTACC...................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................ATCCATCCGAGATTCCCAACGTTACT..................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................TTATTCCTCCAGTGTCTACTATAC..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCGGATTTCAACGT.......................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............................CTCCCAGGAATGCCGTCTTACTTTCTGC..............................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...................................................TTTCTGCAAGGCAAGTTATTG................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................CA-TTCTTAGCTTAACATCATA............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................CGTCTTACTTTCTGCAAG...........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TTAGCTTAACATCATATCGTT.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TTCTTCGGATTTCAACGTATAA------GCGG.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................TCTTACTTTCTGCAAGGCAAG......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................CAGGAATGCCGTCTTACTTTC.................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................GCAAGGCAAGTTATTGAC----T------TT---------------TG................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CGGATTTCAACGTATAA------GCGGC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TCAAAAAGGACTCCCAGGAATGCCGT..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................TCGTTCTTCGGATTTCAACGT.......................2111.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TTCAAAAAGGACTCCCAGGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.CAATAGTTGCACTAACTGTT...................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CCTCCAGTGTCTACTATACTT........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTTCGGATTTCAACGTA......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................CAAAAAGGACTCCCAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................AGCACT-----------------TCTTTTCGTACCTGT................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................CCATCCGAGATTCCCAACGTT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAACGTATAA------GCGGC........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................TCAAAAAGGACTCCCAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................TCCCAGGAATGCCGTCTTACTTTCTGC..............................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GATTTCAACGTATAA------GCGGCT.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TCGGATTTCAACGTATAA------GCGGCT.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................GGACTCCCAGGAATGCCG...........................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GGACTCCCAGGAATGCCGTCT........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................................................................................................................................................................................ACTTTTTCTAAGTTTTTTGG........................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................TACCTGTTT--------------------------T------------TTG-TTTTATGC-..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................GACTCCCAGGAATGCCGTC.........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droSim2
ACAATAGTTGCATTAACTGTTCAAAAGGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----AGA-ACAAT---------------AATACTTTAGAGCAT--AAGTAATAACAGGTGTATTATTTAAAGGCCTCACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCAGTTT--------------------------T------------TTG-TTTTATGC-TA---------------------ATGCTGTAATAATGTACGA-TTATTAGATTAACATCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCTACGCCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGATTTCAACGTATAA------GC...........22121.0021012900000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTTCTTCGGATTTCAACGTATAA------GC...........2612.00202000000000000000
................................................................................................................................................................................................................................................................................................................................................................................ATTAACATCATATCGTTCTTCGGA................................2411.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................TTATGC-TA---------------------ATGCTGTAATAAT......................................................................2111.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TCATATCGTTCTTCGGATTT.............................2011.00100000000000001000
.....................................................................................................................................................TCACTGAATCCATCCGAGATT..............................................................................................................................................................................................................................................................2111.00100010000000000000
.................................CCAGGAATGCCGTCTTACT....................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
..................GTTCAAAAGGGACTCCCAGGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.........................................................................................................................................................................................TTCCTCCAGTGTCTACTATAC..........................................................................................................................................................................................................................2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................GTTCTTCGGATTTCAACGTATAA------GC...........2511.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................ACATCATATCGTTCTTCGGAT...............................2111.00101000000000000000
droSec2
ACAATAGTTGCATTAACTGTTCAAAAGGGACTCCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----AGA-ACAAT---------------TATACTTTAGAGCAT--AAGTAATAACAGGTGTATTATTTAAAGGCCTCACTGAATCCATCCGAGATTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTAAGTTTTTTGGTAAGCACT-----------------TCTTTTCGTACCAGTTT--------------------------T------------TTG-TTTTATGC-TA---------------------ATGTTGTAATAATGGACGA-TTATTAGATTAATATAATATCGTTCTTCGGATTTCAACGTATAA------GCGGATACGCCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................CTTCGGATTTCAACGTATAA------GC...........2212.0020020
.......................................................................................................................................................ACTGAATCCATCCGAGATTCCCAAC........................................................................................................................................................................................................................................................2511.0011000
......................AAAAGGGACTCCCAGGAAT...............................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
..................GTTCAAAAGGGACTCCCAGGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..................GTTCAAAAGGGACTCCCAGG..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................AACGTTACTTTATTCCTCCAGTGTC..................................................................................................................................................................................................................................2511.0010010
..................................CAGGAATGCCGTCTTACTTTC.................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
.......................AAAGGGACTCCCAGGAATG..............................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTTCGGATTTCAACGTATA....................2511.0010010
droYak3
ACAATAGTTGCACTCACTGTTCAAAAGGGGCTGCCAGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----GGAAAGAAT---------------AATATTCTAAAATAC--AACTAATAATAGATGTATTACTTAAAGGTCTCACGGAATCCATACGAGATTCCCAGCGTTACTTTATTCCCCCAGTGTCTACTATACTTTTCCTAAGTTTTTTGGTAAGCAAT-----------------GT---------------TTTC-----------------------TACTTTTCTGTCTTG-TTTTATAC-AA---------------------CCG-----------T-ACA-TTCTCAGCTTAACATCATATCGTTCTTCGGGTTTCAACGAATAA------GCGGGTACATCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................ATCCATACGAGATTCCCAGCGTTACTT.................................................................................................................................................................................................................................................2712.00202000000000
...........ACTCACTGTTCAAAAGGGGCTGC......................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
...............................TGCCAGGAATGCCGTCTTAC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTTCTTCGGGTTTCAACGA.......................2011.00100100000000
...................................................................................................................................................................................................................................................................................................................................................................................AACATCATATCGTTCTTCGGGTT..............................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................TCTCAGCTTAACATCATATCG.........................................2111.00100000010000
............................................................................................................................................................ATCCATACGAGATTCCCAGCGTTAC...................................................................................................................................................................................................................................................2511.00100000010000
..................GTTCAAAAGGGGCTGCCAGGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.....................CAAAAGGGGCTGCCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................CGTTCTTCGGGTTTCAAC.........................1811.00100000100000
...........................................................................................................................................................................................................................................................................................................................................................................................ATCGTTCTTCGGGTTTCAACGAA......................2311.00101000000000
droEre2
ACAATAGTCGCACTTACTGTTCAAAAGGGATTGCCTGGAATGCCGTCTTACTTTCTGCAAGGCAAGTAATTAAC----GGAAAGAAT---------------AATAATCCAGAATGT--AACTAATAATAGATGTATTATTTAAAGGCCTCACGGAATCCATACGAGACTCCCAACGTTACTTTATTCCTCCAGTGTCTACTATACTTTTTCTCAGTTTTTTGGTAAGCACT-----------------TT--TTCCTACCAGTTT--------------------------T------------TGG-TTTTCTGC-AA---------------------CTC-----------T-ACA-TTCTTAGATTAACGTCATATCGTTCTTCGGATTTCAACGTATAA------GCGGCGA------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................GTTCAAAAGGGATTGCCTGGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................2612.0020100100
......GTCGCACTTACTGTTCAAAAGGGATT........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.............................ATTGCCTGGAATGCCGTCTT.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................ATACGAGACTCCCAACGTTACTTT................................................................................................................................................................................................................................................2411.0010100000
.......................................ATGCCGTCTTACTTTCTGCAAGGC.........................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..................................................................................................................................................................................TACTTTATTCCTCCAGTGT...................................................................................................................................................................................................................................1911.0010001000
...............................................................................................................................................................CATACGAGACTCCCAACGTTACT..................................................................................................................................................................................................................................................2311.0010100000

Generated: 05/17/2015 at 11:47 PM