ID:

dwi_748

 Coordinate:

scf2_1100000004511:11338360-11338510 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.9 -16.9 -16.9

Flybase annnotation

exon [dwil_GLEANR_16917:3]; CDS [Dwil\GK16546-cds]; intron [Dwil\GK16546-in]

Repeatable elements

NameClassFamilyStrand
Helitron-2_DVirRCHelitron+
mature
  1. scf2_1100000003128:4888-4911 -
  2. scf2_1100000011900:425-448 -
  3. dwi_748  scf2_1100000004511:11338465-11338488 -
  4. scf2_1100000004513:3919381-3919404 -
  5. scf2_1100000004515:1154330-1154353 -
  6. scf2_1100000004516:56662-56685 -
  7. scf2_1100000004521:1603893-1603916 -
  8. scf2_1100000004558:1023618-1023641 -
  9. scf2_1100000004585:5969730-5969753 -
  10. scf2_1100000004620:204861-204884 -
  11. scf2_1100000004830:190806-190829 -
  12. scf2_1100000004884:329714-329737 -
  13. scf2_1100000004884:711491-711514 -
  14. scf2_1100000004943:3353324-3353347 -
  15. scf2_1100000004947:203845-203868 -
  16. scf2_1100000004902:11946857-11946880 -
  17. scf2_1100000004909:10047446-10047469 -
  18. scf2_1100000004913:181949-181972 -
  19. scf2_1100000004936:982117-982140 -
  20. scf2_1100000004949:20662-20685 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGAACTCGTCTCGCTGATCAAGAATATATATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACACTTCTGACCAAAATGAATATACCCCTTTCACAAGGGTATAACTATATAAACATGTTTATAAACAAATATATAACGAGCTAAAGGTGAAGTTAATCAAAATTACAACTTACTTAAAATATATGTATGCAGGTCTCTTCAGTTAAGTGAGCGCTCACCAAATCGTGCACACAACAGATCGA
**************************************************...........(((((.(((...................(((((((.........)))))))..((((((....((((....))))..)))))).........((((((.(((............)))))))))........)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V119
head
.....................................................................................................................................................................................................................................AATCGTGCTCACTTCAGATCG. 21 3 2 0.50 1 1 0 0 0
.....................................................................................................................................................................................................................................AATCGTGCTCACTTCAGATC.. 20 3 5 0.20 1 1 0 0 0
...................................................................................................................................AAACAAACATACAACGAGC..................................................................................................... 19 2 18 0.06 1 0 1 0 0
......................................ATGGTCGGAGATGCTTCCTTC................................................................................................................................................................................................ 21 0 20 0.05 1 0 0 0 1
........................................................................CTTCTGACCAAAATGAATATACCC........................................................................................................................................................... 24 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

ACTTGAGCAGAGCGACTAGTTCTTATATATATGAAATATACCAGCCTCTACGAAGGAAGATACGCAACGTGTGAAGACTGGTTTTACTTATATGGGGAAAGTGTTCCCATATTGATATATTTGTACAAATATTTGTTTATATATTGCTCGATTTCCACTTCAATTAGTTTTAATGTTGAATGAATTTTATATACATACGTCCAGAGAAGTCAATTCACTCGCGAGTGGTTTAGCACGTGTGTTGTCTAGCT
**************************************************...........(((((.(((...................(((((((.........)))))))..((((((....((((....))))..)))))).........((((((.(((............)))))))))........)))))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body
.............................................................ACGCAACGTGTGAAGACTGGTTT....................................................................................................................................................................... 23 0 20 0.15 3 3 0 0
...............................................................GCAACGTGTGAAGACTGGTT........................................................................................................................................................................ 20 0 20 0.15 3 0 3 0
.............................................................................................................................................................................GGTTGAATGAATTTTATAA........................................................... 19 2 10 0.10 1 0 1 0
....................................TATACCAGCCTCTACGAAGGAAGAT.............................................................................................................................................................................................. 25 0 20 0.10 2 2 0 0
..TTGCCCAGAGCGAATAGTT...................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 1 0
.......................................ACCAGCCTCTACGAAGGAAGATACGCA......................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0
..............................................................CGCAACGTGTGAAGACTGGTTTTAC.................................................................................................................................................................... 25 0 20 0.05 1 0 1 0
..........................ATATATGAAATATACCAGCCTCTACGAA..................................................................................................................................................................................................... 28 0 20 0.05 1 0 1 0
...................................................GAAGGAAGATACGCAACGTG.................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0
..................................................CGAAGGAAGATACGCAACGTGTG.................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0
..................................................................ACGTGTGAAGACTGGTTTTAC.................................................................................................................................................................... 21 0 20 0.05 1 1 0 0
................................................................CAACGTGTGAAGACTGGTTTTA..................................................................................................................................................................... 22 0 20 0.05 1 1 0 0
...............................................CTACGAAGGAAGATACGCAACGTGT................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1
...................................................................CGTGTGAAGACTGGTTTTACTTA................................................................................................................................................................. 23 0 20 0.05 1 1 0 0
.................................................ACGAAGGAAGATACGCAACGTGTGAAG............................................................................................................................................................................... 27 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:11338310-11338560 - dwi_748 TGAACTCGTCT-----CGCTGATCAAGAATATA-TATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACAC-------TTC-TGACCAAAATGAATAT--ACCCCTTTC-----------------ACAAGGGTATAACT------------AT---AT-AAAC----ATGTTTATAAACAAATATA---------TAACG-------------------------------------------AGCTAAAGG------------------------------------TGAAGTTAATCAAAATTACAACTTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------AATA-------------------------TATGTA---TGC-------AGGT-------C----TC-----------------------------TTCAGTTAAGTG-------AG-----------------CGCTCACCAAAT-------------------------------CGT-----GCACACAA-----CAGATCGA
droVir3 scaffold_13047:294853-295093 - dvi_14865 TCAATTCGGTTTTAGATGCTGATCTAGAATATAATATACTTTATGGGGTTGGAGATGTTTTCTTCTATGCGGTATACAT-------TCAATGAAT-AAAGTATAAT--ACCCT--CT-----------------ACAAGGGTATAAAA------------AC--CAC-ATATG----------------------------------------------TT------------GATTTT--TTA------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATATATTTAAA-AGAAT-ATTAAATAAATTTC---------------------------------------------------------------------------------------------------ATTTCAAACAATGCTTA----CAGG----------------CCG----------G-CAAGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACACACGA-----C-----AG
droMoj3 scaffold_6500:21538330-21538577 - TCAACTCAGCTCGTCACCCTGATCAAGAATATA-TATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATAC-------ATT-TCAACAAAACCATTAT--ACCCT--GATTTCC--CATTGAAAAT----GGGTTCAGGG-----TATAAAAAT---AT-ATATGTATATGCATATATATATATATA---------TAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAC-------------------------------------------------------------------------ATATGTATAATAA------------------------GAGTACGCGAAAGTATGCT------------------------------------------------------------------------------------------------------------TAGTATGCTTAGGTCTCAGTAATTG-----------------------------------GG-----ACATAGGA-----CAGAT---
droGri2 scaffold_15245:12757316-12757525 - TGAGATCGACC---GTTCCTGATCAAGAATATA-TATGCCTTCTGTAGTCAGAGATGATTCCTTCTGTCTGCTACATAC-------TTT-AGCACAAAACCATCAAAAACCCT--TTTTAGA--CATCTTTAAT----GGGTTCAAGG------------AG--CAA-AAAAG----------------------------------------------TT------------GAGCAT--TTA------------G-----TAA---------------------------------------------------------CTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AATGTT----------------------------------------------------------T-------TT-------ATTC-------A----ATTTC----------------------------CAGTAAACTT-------AA-----------------TA-TTACCAAAT-------------------------------ACT-----ATAA--------------ACA
dp5 Unknown_singleton_673:288-542 - TCGACTCGACTATTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTC-ACCACAAATCTAATAT--ACCCC--AATACTCATTTTGAGTATC----GGGTATAAAA------------AG--G-A-AAAA------------A-AAACAAAACAAAAAAAAGGCATAAATGCTAGC---------------------------------------------------------------------------------------------------------TTAGTTTGTGTGTTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------ATTTTTTTTTAGACAGCACGTTG-CAAACG-------------------------------------------------ACCAGTT-------------------------------CCA-----GTAGACAA-----TCGATGGG
droPer2 scaffold_5748:322-590 + TCGACTCGGCTATTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTT-ACCACAAATCTAATAT--ACCCC--AATACTCATTTTGAGTATC----GGGTATAAAA------------AA---AC-ACAC----------------------------------------------AAA------------CTAACG--AGAGAAAACTGTGTAA-----AGAGTTAGAAAGTGCCAATAAATACATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACAAAC------------------------ACACACACAC--AAGAGACT--------------------------------------------------------------------------------------------T-----------------------------TTCAATTA--AAAACAACAAA-----------------CAGGCAGCAAAT-------------------------------CGC-----C-----AA---------CACA
droAna3 scaffold_13340:10150640-10150884 - TCGACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGACCAAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAATA------------AA--T-A-AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAA--CCAAAATAAAAAAATTATT----------------------------------AAATATTT---TTAT--------------TTCTATATTTGTTT----A------------------------------------TAATTAT-------------------------------------------------------------------------GTT----------------------------------------------------------------------------------TTT-------ATTT-------C----TTTTT--------------AATAAAAATT----------------------T-----------------CTTTTATTTAAT-------------------------------CTT-----TTAAAAAA-----CAGATGTA
droBip1 scf7180000394229:8326-8586 - TCAACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGGACAAAATTATAAT--ACCCA--ATTATA-------------AAAAGGGTATAAAA------------AC---AC---T-----AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGGAAGTAATAATAACAGTTAAAAATCATAA---------------------------------------------------GTAA----------------------------------------------------------------------------------------------------------------------A--AAAACACTTTCATTATAATACA----------------------------CCTT------------------------------------------------------------------------------------------------T-----------------CGGTTAAT---TCCTTCATTATTAAAGAAGTATTAAAAGAAGCGTT-----TTGCTCAACAGAAGAAAATAA
droKik1 scf7180000302555:2920-3191 + TCGACTCGGCTGTTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACCCT---------------------GCAAGGGTATAAAA------------AC---TT-GCAC------------------------------------------ACG--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCCTCAGTGGTTTTATTTAAA-AATATAACTAAAGAAATTCCAAAGAAGAACAAAATATAATAATAAAACACAAATAAAAAATTCCATACATACATAAATATA-----------------------------TT----------------------------TAGG----------------CCA----------G-CTTAGCGCT----------ATTCTGCGCTT----------------------------------------------------------AGCA------------------------------------------------------------AAA
droFic1 scf7180000449448:5095-5341 + T--ATTCTGCTCGTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCTGAGGGGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACTTGCTCT-----------------GCAAGGGTATAAAA------------AT--C-A----T------------------------------------------C----AAATATATCATAGC------TGCCATAAGAAAGTGCAAAAAG------------------------------------TGTATATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAACGCAAAT---------------------------------------------------------------------AAAATTATAA-C-ATTG----------------------------------------------------------------TGG-TTTTTGCTGTC--------ATATG-------AACTATCAT-----------------CAAA------------------------------------A-----ATATAA--AAATAAGTTGA
droEle1 scf7180000487466:27764-28011 - TCGACTCGCCTAGTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAATAAAGTT-------GC---CG-AAAT----ATCT---CGAACGCAT-TT---------TAATA-------------------------------------------AGGTACATG------------------------------------TGAATTT-------------------------------------------------------TAAATTGTAGCT----------------------------------GGGCAAATGACATAA---------------------------------------------------------------------------------------------------------------------------------------------------ACACA-----------------------------CACACGCACTTGT----------TTG----CTGG----------------CCA----------G----------------------------------------------------TA--TG-------AA-----------------CACTCA-CAAA------------------------------------C-----ACACAA-----C------A
droRho1 scf7180000779558:3932-4176 - TCAACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGACCAAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAAAA------------AG---AT-ACA-----AGGCAAAAA-ACGGCTAAG---------TCACGAGG------------------------------------------------GCGAAGTTAGAATACTCTGGCAGATACTTCATAAAATATCTTATAA--AACAAGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------TTTAATTA--TG-------AG-----------------TATTAA-CAAA------------------------------------A-----GAACAA-----CAGATTAA
droBia1 scf7180000301872:2301-2533 - TCGACTCGTCTTGTGACACTGATCAAGAATATA-TATACTTTATAGGGTCGAAAACATCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTAAAATCATTAT--ACCCT--CT-----------------GCAAGGGTATAAAA------------AC---AT-ATACA----------------------------------------------TT------------TAGCCC--ATC----------------------------------------------------------------------ACAAATTATTT----GAATTGTTTGTATTAACATTTACCAAAAATGTTGCATTATATAAAATGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAC---------------------------------------------------------------------------------------------------------------------------AAAAGCTACACTTCAGT---------------TCAGTA--------------------------------------------------------------------------------GGC
droTak1 scf7180000412936:17368-17642 - TCGACTCGTCTTGTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATCATAAT--ACCCT--CT-----------------GCAAGGGTATAACC------------AA--TAC-----------------------------------------------A----AT------------------------------------------------------------------------------------------------------TA----ATCGCA-TCTAACGAAAGTTA--CAACAA--------------------------------ATTTAAAAATCATAAT--AATAAATCAAATTGGCACTAGAGTAATA----AAAT-AACTAAAACATGTAAAAGAAAATTTCCCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTAT-----------------T-T----------CTCC-TAAACA-------------------------------------------------AACAAA------------------------------------T-----CCACAA-----CAAGTCCA
droEug1 scf7180000405655:1085-1330 - TCGACTCGGGAATTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCTGAAACGCTTTCTTCCATCTGTTACATAC-------TTT-TCAAAGAACCTAATAT--ACCCT--TTTACTC--TACGAGTAAT----GGGTATAAAT------------GTAATGT-CCA-----TTGTAAATA-AAGCAAAAC---------TCATA---------------------------------------------------TTTAA---------------------------------------------------------CTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AATGCT---------TTACA----------------------------TTTTTAGTTAAATTTCTGTA---TTCAAAGTTT-----------------T-C----------------------------TAAGTT-------------------------------------CAAAAT-------------------------------CGT-----GACCTCTG-----CAGTTCGA
dm3 chr4:520187-520433 - TCGACTCGTCTATTGATCCTGATAAAGAATATA-TATACCTTATATGGTCGGAATGTCATCCTTCTACCTGTTACATAC-------TTT-TTAACGAATCTAGTAT--ACCCT--TTTACTC--TACGAGCAAC----GGGTATAAAT------------AT---GC-AAGC----------------------------------------------GA-------------------TG-------------------------------------------------------------------------------------------CAGTTCAAATGGTAATTT--CAAAAATAAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTGTACTC-ACCG----------------------------------------------------------------TCG-CAC----------------------------------------------------------------------------------------------------ACGCAG-----TATTTTGA
droSim2 4:341810-342074 - TCGACTCGGCTATTGATCCTGATCAAGAATATA-TATACTTTATATGATGGGAATCTCTTCCTTCTATCTGTTACACAC-------TTT-TTAACGAATCTAGTTT--TCGCA--TTTACTC--TACGAGTAAT----GGGTGCATAT------------AT---AC-----------------------------------------------AAGCGA------------------------------------------------------------------------------------------------------TTT----TCCGCGTTCGAATGGAAATTT--CAAAAATGAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTATACTC-ACCG----------------------------------------------------------------TCG-CACACGCAGTA--------CTTTG-------AATTAGCATTC----------------------------------------------------------------------------TTAA
droSec2 scaffold_30:246825-247089 - TCGACTCGGCTATTGATCCTGATCAAGAATATA-TATACTTTATATGATGGGAATCTCTTCCTTCTATCTGTTTTACAC-------TTT-TTAACGAATCTAGTTT--TCGCA--TTTACTC--TACGAGTAAT----GGGTGCATAT------------AT---AC-----------------------------------------------AAGCGA------------------------------------------------------------------------------------------------------TTT----TCCGCGTTCGAATGGAAATTT--CAAAAATAAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTATACTC-ACCG----------------------------------------------------------------TCG-CACACGCAGTA--------CTTTG-------AATTAGCATTC----------------------------------------------------------------------------TTAA
droYak3 v2_chrUn_4989:27615-27881 + TCGACTCGGCTATCGATCCTGATCAAGAATATA-TATACTTTATATGGTTGGAAACGCTTCCTTCTGCCTGTTACATAC-------TTT-TCAACGAATCTAGTAT--ACCCT--TTTACTC--TACGAGTAAC----GGGTATAAAA------------AT--T-GTACC-----ATGCAAATAGATGAATTTC---------TAATG---------------------------------------------ATAAAAT------------------------------------TGCATGTAA--AACACTACAACTTTTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------TTATATG----------------------------CATT----------------TCA----------A-CTTTTTTTT----------TTTTCGCGCGAGTCCCAC-G-------------------------------------------------GCCACAC-------------------------------CTT-----CCGCCCAA-----CCGACCGA
droEre2 scaffold_4784:21626213-21626458 - TAG------------ATCCTGATCAAGAATATA-TATACTTTATATGATCGGAAACGCTTCCTTCTACTTGTTACATAA-TATAC-TTT-TCGAAGAATCTAGTAT--ACCCT--TTAATTT--TAAGAGTAAC----GGGTATAAAA------------AT--T-A----C------------------------------------------A----AAATA----A----------TG-------------C--------------------------------------------------------------------T------------TAATATGAGATTTT--G-----------------------------------------------------A---------ATAT--------------TTCTGTATAT-TCC----A------------------------------------AAGGTAT-------------------------------------------------------------------------GTATTTAGAA--AAGGTACCTTTCTTAAAATTCA----------------------------TTG------------------------------------------------------------------------------------------------AT-----------------CGTTTATTATAT-------------------------------CCC-----TCA-TCAC-----CAAATCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGAACTCGTCT-----CGCTGATCAAGAATATA-TATACTTTATATGGTCGGAGATGCTTCCTTCTATGCGTTGCACAC-------TTC-TGACCAAAATGAATAT--ACCCCTTTC-----------------ACAAGGGTATAACT------------AT---AT-AAAC----ATGTTTATAAACAAATATA---------TAACG-------------------------------------------AGCTAAAGG------------------------------------TGAAGTTAATCAAAATTACAACTTACTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------------------------------------------------AATA-------------------------TATGTA---TGC-------AGGT-------C----TC-----------------------------TTCAGTTAAGTG-------AG-----------------CGCTCACCAAAT-------------------------------CGT-----GCACACAA-----CAGATCGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................ATGGTCGGAGATGCTTCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100001
..............................................................................C-------TTC-TGACCAAAATGAATAT--ACCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05110000
droVir3
TCAATTCGGTTTTAGATGCTGATCTAGAATATAATATACTTTATGGGGTTGGAGATGTTTTCTTCTATGCGGTATACAT-------TCAATGAAT-AAAGTATAAT--ACCCT--CT-----------------ACAAGGGTATAAAA------------AC--CAC-ATATG----------------------------------------------TT------------GATTTT--TTA------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATATATTTAAA-AGAAT-ATTAAATAAATTTC---------------------------------------------------------------------------------------------------ATTTCAAACAATGCTTA----CAGG----------------CCG----------G-CAAGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACACACGA-----C-----AGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCAC...................2813.003001000000000000000000000000001000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGAT........................2612.002000000000000000000000000002000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACACACGA-----C-----A.2811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------G-CAAGTTAAG----------ACATCGTA................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGA.........................2211.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACACACGA-----C-----A.2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACA..................2911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------G...........................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------G-CAAGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGA.........................3011.001000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCC......................2511.001000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GG..........................2411.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCACACACGA-----C-----A.2911.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAG----------ACATCGTACCA----------------------------------------------------------AACA-----------------------------------GGATCCCA....................2811.001000010000000000000000000000000000000000000000000000000000000000
.......GGTTTTAGATGCTGATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1740.251000000000000000000000000000000000000000000000000000000000000001
.................................ATATACTTTATGGGGTTGGAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000001000000000000000000000000010000000000000000000000000000000
.......................................TTTATGGGGTTGGAGATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
TCAACTCAGCTCGTCACCCTGATCAAGAATATA-TATACTTTGTGGGGTCTGCCACGCCTCCTTCTCCCTGTTACATAC-------ATT-TCAACAAAACCATTAT--ACCCT--GATTTCC--CATTGAAAAT----GGGTTCAGGG-----TATAAAAAT---AT-ATATGTATATGCATATATATATATATA---------TAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGTAC-------------------------------------------------------------------------ATATGTATAATAA------------------------GAGTACGCGAAAGTATGCT------------------------------------------------------------------------------------------------------------TAGTATGCTTAGGTCTCAGTAATTG-----------------------------------GG-----ACATAGGA-----CAGAT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................G-----TATAAAAAT---AT-ATATGTATAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251100000
.....................................................CACGCCTCCTTCTCCCTGTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
droGri2
TGAGATCGACC---GTTCCTGATCAAGAATATA-TATGCCTTCTGTAGTCAGAGATGATTCCTTCTGTCTGCTACATAC-------TTT-AGCACAAAACCATCAAAAACCCT--TTTTAGA--CATCTTTAAT----GGGTTCAAGG------------AG--CAA-AAAAG----------------------------------------------TT------------GAGCAT--TTA------------G-----TAA---------------------------------------------------------CTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AATGTT----------------------------------------------------------T-------TT-------ATTC-------A----ATTTC----------------------------CAGTAAACTT-------AA-----------------TA-TTACCAAAT-------------------------------ACT-----ATAA--------------ACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TCGACTCGACTATTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCATTTTC-ACCACAAATCTAATAT--ACCCC--AATACTCATTTTGAGTATC----GGGTATAAAA------------AG--G-A-AAAA------------A-AAACAAAACAAAAAAAAGGCATAAATGCTAGC---------------------------------------------------------------------------------------------------------TTAGTTTGTGTGTTTGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------ATTTTTTTTTAGACAGCACGTTG-CAAACG-------------------------------------------------ACCAGTT-------------------------------CCA-----GTAGACAA-----TCGATGGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................TCGGAAACGATTCCTTCTGGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23203.056100000006100
.......................................................................................TC-ACCACAAATCTAATAT--ACCCC--AAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26202.054104000000010
....................................................AAACGATTCCTTCTGGACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.3066000000000
.......................................................................................TC-ACCACAAATCTAATAT--ACCCC--AATACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.3060600000000
................................A-TATACTTTATGGGGTCGGAAACG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.3060600000000
.........................................TATGGGGTCGGAAACGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040000400000
.............................................................................................................................TTGAGTATC----GGGTATAAAA------------AG--G-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040400000000
...ACTCGACTATTGATGCTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040400000000
..............................................................TTCTGGACGTTACACACATCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020020000000
.....................ATCAAGAATATA-TATACTTTATGGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020020000000
..............................................GGTCGGAAACGATTCCTTCTGGACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.1020020000000
............................................................................................CACAAATCTAATAT--ACCCC--AATAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1020200000000
............TTGATGCTGATCAAGAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020200000000
..............................................................................................................................TGAGTATC----GGGTATAAAA------------AG--G-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.......GACTATTGATGCTGATCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................ATTCCTTCTGGACGTTACACACAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510000100000
...............................................................................................................................GAGTATC----GGGTATAAAA------------AG--G-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
............................ATATA-TATACTTTATGGGGTCGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
.....TCGACTATTGATGCTGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000001000
.....TCGACTATTGATGCTGATCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
..........................................................................................ACCACAAATCTAATAT--ACCCC--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
......................................................ACGATTCCTTCTGGACGTTACACACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510100000000
......CGACTATTGATGCTGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
...........................................................................ACACATCCATTTTC-ACCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
TCGACTCGGCTATTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAAACGATTCCTTCTGGACGTTACACACATCCACTTTT-ACCACAAATCTAATAT--ACCCC--AATACTCATTTTGAGTATC----GGGTATAAAA------------AA---AC-ACAC----------------------------------------------AAA------------CTAACG--AGAGAAAACTGTGTAA-----AGAGTTAGAAAGTGCCAATAAATACATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACAAAC------------------------ACACACACAC--AAGAGACT--------------------------------------------------------------------------------------------T-----------------------------TTCAATTA--AAAACAACAAA-----------------CAGGCAGCAAAT-------------------------------CGC-----C-----AA---------CACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................TTACACACATCCACTTTT-ACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.306060000
...............................................................TCTGGACGTTACACACATCCACTTTT-ACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.153030000
........................................................................TACACACATCCACTTTT-ACCAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102020000
............................................................................................CACAAATCTAATAT--ACCCC--AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
.......................................................................TTACACACATCCACTTTT-AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.........................................................................................................T--ACCCC--AATACTCATTTTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
..................................................................................................................................................................................................................................................................................TGCCAATAAATACATTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACACAAAC------------------------AC..........................................................................................................................................................................................................................................................28200.051010000
......................................................................................................................ACTCATTTTGAGTATC----GGGTATAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
droAna3
TCGACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGACCAAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAATA------------AA--T-A-AAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAAA--CCAAAATAAAAAAATTATT----------------------------------AAATATTT---TTAT--------------TTCTATATTTGTTT----A------------------------------------TAATTAT-------------------------------------------------------------------------GTT----------------------------------------------------------------------------------TTT-------ATTT-------C----TTTTT--------------AATAAAAATT----------------------T-----------------CTTTTATTTAAT-------------------------------CTT-----TTAAAAAA-----CAGATGTASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................AAAAAAA--CCAAAATAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1970.141010000
.......................................................................................................................................................................................................................................................................................................................................................AAAAAAA--CCAAAATAAAAAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.......................CAAGAATATA-TATACTTTATAGGGTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
droBip1
TCAACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGGACAAAATTATAAT--ACCCA--ATTATA-------------AAAAGGGTATAAAA------------AC---AC---T-----AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAAGGAAGTAATAATAACAGTTAAAAATCATAA---------------------------------------------------GTAA----------------------------------------------------------------------------------------------------------------------A--AAAACACTTTCATTATAATACA----------------------------CCTT------------------------------------------------------------------------------------------------T-----------------CGGTTAAT---TCCTTCATTATTAAAGAAGTATTAAAAGAAGCGTT-----TTGCTCAACAGAAGAAAATAASizeHit CountTotal NormTotal
No Reads
droKik1
TCGACTCGGCTGTTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACCCT---------------------GCAAGGGTATAAAA------------AC---TT-GCAC------------------------------------------ACG--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATTTCCTCAGTGGTTTTATTTAAA-AATATAACTAAAGAAATTCCAAAGAAGAACAAAATATAATAATAAAACACAAATAAAAAATTCCATACATACATAAATATA-----------------------------TT----------------------------TAGG----------------CCA----------G-CTTAGCGCT----------ATTCTGCGCTT----------------------------------------------------------AGCA------------------------------------------------------------AAASizeHit CountTotal NormTotal
No Reads
droFic1
T--ATTCTGCTCGTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCTGAGGGGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACTTGCTCT-----------------GCAAGGGTATAAAA------------AT--C-A----T------------------------------------------C----AAATATATCATAGC------TGCCATAAGAAAGTGCAAAAAG------------------------------------TGTATATAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATAACGCAAAT---------------------------------------------------------------------AAAATTATAA-C-ATTG----------------------------------------------------------------TGG-TTTTTGCTGTC--------ATATG-------AACTATCAT-----------------CAAA------------------------------------A-----ATATAA--AAATAAGTTGASizeHit CountTotal NormTotal
No Reads
droEle1
TCGACTCGCCTAGTGATGCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAATAAAGTT-------GC---CG-AAAT----ATCT---CGAACGCAT-TT---------TAATA-------------------------------------------AGGTACATG------------------------------------TGAATTT-------------------------------------------------------TAAATTGTAGCT----------------------------------GGGCAAATGACATAA---------------------------------------------------------------------------------------------------------------------------------------------------ACACA-----------------------------CACACGCACTTGT----------TTG----CTGG----------------CCA----------G----------------------------------------------------TA--TG-------AA-----------------CACTCA-CAAA------------------------------------C-----ACACAA-----C------ASizeHit CountTotal NormTotal
No Reads
droRho1
TCAACTCAGGAGGTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCGGAGATGTCTCCTTCACTGCGTTGCACAC-------TTT-TGACCAAAATTATAAT--ACCCT--CT-----------------GCAAGGGTATAAAA------------AG---AT-ACA-----AGGCAAAAA-ACGGCTAAG---------TCACGAGG------------------------------------------------GCGAAGTTAGAATACTCTGGCAGATACTTCATAAAATATCTTATAA--AACAAGTCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-----------------------------TTTAATTA--TG-------AG-----------------TATTAA-CAAA------------------------------------A-----GAACAA-----CAGATTAASizeHit CountTotal NormTotal
No Reads
droBia1
TCGACTCGTCTTGTGACACTGATCAAGAATATA-TATACTTTATAGGGTCGAAAACATCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTAAAATCATTAT--ACCCT--CT-----------------GCAAGGGTATAAAA------------AC---AT-ATACA----------------------------------------------TT------------TAGCCC--ATC----------------------------------------------------------------------ACAAATTATTT----GAATTGTTTGTATTAACATTTACCAAAAATGTTGCATTATATAAAATGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTGTAC---------------------------------------------------------------------------------------------------------------------------AAAAGCTACACTTCAGT---------------TCAGTA--------------------------------------------------------------------------------GGCSizeHit CountTotal NormTotal
No Reads
droTak1
TCGACTCGTCTTGTGATGCTGATCAAGAATATA-TATACTTTATGGGGTCGGAAACGTCTCCTTCACTGCGTTGCAAAC-------TTC-TGACTGAAATCATAAT--ACCCT--CT-----------------GCAAGGGTATAACC------------AA--TAC-----------------------------------------------A----AT------------------------------------------------------------------------------------------------------TA----ATCGCA-TCTAACGAAAGTTA--CAACAA--------------------------------ATTTAAAAATCATAAT--AATAAATCAAATTGGCACTAGAGTAATA----AAAT-AACTAAAACATGTAAAAGAAAATTTCCCCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATATTAT-----------------T-T----------CTCC-TAAACA-------------------------------------------------AACAAA------------------------------------T-----CCACAA-----CAAGTCCASizeHit CountTotal NormTotal
No Reads
droEug1
TCGACTCGGGAATTGATCCTGATCAAGAATATA-TATACTTTATAGGGTCTGAAACGCTTTCTTCCATCTGTTACATAC-------TTT-TCAAAGAACCTAATAT--ACCCT--TTTACTC--TACGAGTAAT----GGGTATAAAT------------GTAATGT-CCA-----TTGTAAATA-AAGCAAAAC---------TCATA---------------------------------------------------TTTAA---------------------------------------------------------CTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------------AATGCT---------TTACA----------------------------TTTTTAGTTAAATTTCTGTA---TTCAAAGTTT-----------------T-C----------------------------TAAGTT-------------------------------------CAAAAT-------------------------------CGT-----GACCTCTG-----CAGTTCGASizeHit CountTotal NormTotal
No Reads
dm3
TCGACTCGTCTATTGATCCTGATAAAGAATATA-TATACCTTATATGGTCGGAATGTCATCCTTCTACCTGTTACATAC-------TTT-TTAACGAATCTAGTAT--ACCCT--TTTACTC--TACGAGCAAC----GGGTATAAAT------------AT---GC-AAGC----------------------------------------------GA-------------------TG-------------------------------------------------------------------------------------------CAGTTCAAATGGTAATTT--CAAAAATAAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTGTACTC-ACCG----------------------------------------------------------------TCG-CAC----------------------------------------------------------------------------------------------------ACGCAG-----TATTTTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................TATATGGTCGGAATGTCATCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24123.002300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001050000000000000000000000000000000000000002000120000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
........................................TTATATGGTCGGAATGTCATCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25115.00150000000000000000000000200000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000300000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000110000000000000000000000000
........................................TTATATGGTCGGAATGTCATCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2419.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000400000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TT-TTAACGAATCTAGTAT--ACCCT--TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25105.80580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000100000000000000000000000000000000000000000000000000000000000000013013031230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TC--TACGAGCAAC----GGGTATAAAT------------AT---GC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
........................................................................................................................TC--TACGAGCAAC----GGGTATAAAT------------AT---G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TT-TTAACGAATCTAGTAT--ACCCT--TTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2693.673300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000409002180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................T---GC-AAGC----------------------------------------------GA-------------------TG-------------------------------------------------------------------------------------------CAGTTCAAATGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TACCTTATATGGTCGGAATGTCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................TACCTTATATGGTCGGAATGTCATCCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................TCATCCTTCTACCTGTTACATAC-------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTT-TTAACGAATCTAGTAT--ACCCT--TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26102.802800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000405061110000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.......................................................................................TT-TTAACGAATCTAGTAT--ACCCT--T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24122.082500000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000308001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGTCATCCTTCTACCTGTTACATAC-------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TATA-TATACCTTATATGGTCGGAATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................T------------AT---GC-AAGC----------------------------------------------GA-------------------TG-------------------------------------------------------------------------------------------CAGTTCAAATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTT-TTAACGAATCTAGTAT--ACCCT--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24141.86260000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010003001000000000000000000000040313370000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TT-TTAACGAATCTAGTAT--ACCCT--TTTAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2881.50120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000020101070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTTCTACCTGTTACATAC-------TTT-TTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2641.5060000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TTT-TTAACGAATCTAGTAT--ACCCT--T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25121.50180000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000030502060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TCCTTCTACCTGTTACATAC-------TTT-TT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2541.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATA........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTC-ACCG----------------------------------------------------------------TCG-CAC----------------------------------------------------------------------------------------------------ACGCAG-----TATT....2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TATGGTCGGAATGTCATCCTTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
TCGACTCGGCTATTGATCCTGATCAAGAATATA-TATACTTTATATGATGGGAATCTCTTCCTTCTATCTGTTACACAC-------TTT-TTAACGAATCTAGTTT--TCGCA--TTTACTC--TACGAGTAAT----GGGTGCATAT------------AT---AC-----------------------------------------------AAGCGA------------------------------------------------------------------------------------------------------TTT----TCCGCGTTCGAATGGAAATTT--CAAAAATGAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTATACTC-ACCG----------------------------------------------------------------TCG-CACACGCAGTA--------CTTTG-------AATTAGCATTC----------------------------------------------------------------------------TTAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
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TCGACTCGGCTATTGATCCTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.40800000010007000000
TCGACTCGGCTATTGATCCTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.30600000000060000000
.....TCGGCTATTGATCCTGATCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10200000000020000000
TCGACTCGGCTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.10200000002000000000
.................CCTGATCAAGAATATA-TATACTTTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10200000000020000000
................................................................................................................A--TTTACTC--TACGAGTA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16180.06100000000001000000
................................................................................................................A--TTTACTC--TACGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15190.05100000000001000000
TCGACTCGGCTATTGATCCTGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010000000000000
TCGACTCGGCTATTGATCCTGATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000000001000000
...ACTCGGCTATTGATCCTGATCAAGAATA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100000001000000000
........GCTATTGATCCTGATCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000001000000
....CTCGGCTATTGATCCTGATCAAGAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000001000000000
TCGACTCGGCTATTGATCCTGATCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100000000010000000
..GACTCGGCTATTGATCCTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000000000100000
droSec2
TCGACTCGGCTATTGATCCTGATCAAGAATATA-TATACTTTATATGATGGGAATCTCTTCCTTCTATCTGTTTTACAC-------TTT-TTAACGAATCTAGTTT--TCGCA--TTTACTC--TACGAGTAAT----GGGTGCATAT------------AT---AC-----------------------------------------------AAGCGA------------------------------------------------------------------------------------------------------TTT----TCCGCGTTCGAATGGAAATTT--CAAAAATAAAATATTTTAT----------------------------------GAATATACAGCATAT---------------------------------------------------------------------------------------------------------------------------------------------------ATGTA-----------------------------CATATGCCTATGTAAAAGTATACTC-ACCG----------------------------------------------------------------TCG-CACACGCAGTA--------CTTTG-------AATTAGCATTC----------------------------------------------------------------------------TTAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.CGACTCGGCTATTGATCCTGATCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.1022000
droYak3
TCGACTCGGCTATCGATCCTGATCAAGAATATA-TATACTTTATATGGTTGGAAACGCTTCCTTCTGCCTGTTACATAC-------TTT-TCAACGAATCTAGTAT--ACCCT--TTTACTC--TACGAGTAAC----GGGTATAAAA------------AT--T-GTACC-----ATGCAAATAGATGAATTTC---------TAATG---------------------------------------------ATAAAAT------------------------------------TGCATGTAA--AACACTACAACTTTTTCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAA-----------------------------TTATATG----------------------------CATT----------------TCA----------A-CTTTTTTTT----------TTTTCGCGCGAGTCCCAC-G-------------------------------------------------GCCACAC-------------------------------CTT-----CCGCCCAA-----CCGACCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................TACTC--TACGAGTAAC----GGGTATAAAA------------A....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.7515015000000000
..........................................................TTCCTTCTGCCTGTTACATAC-------TTT-TCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.6513001300000000
.......................................................................................TT-TCAACGAATCTAGTAT--ACCCT--T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
...................................................................................................................TTTACTC--TACGAGTAAC----GGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
......................................CTTTATATGGTTGGAAACGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT----------TTTTCGCGCGAGTCCCAC-.....................................................................................................................23200.05100100000000
............................................................CCTTCTGCCTGTTACATAC-------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100100000000
...............................................................................................................................................................................................................................................................TAAAAT------------------------------------TGCATGTAA--AACACTACAACTTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29200.05100100000000
TCGACTCGGCTATCGATCCTGATC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
...................................ATACTTTATATGGTTGGAAACGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100000010000
droEre2
TAG------------ATCCTGATCAAGAATATA-TATACTTTATATGATCGGAAACGCTTCCTTCTACTTGTTACATAA-TATAC-TTT-TCGAAGAATCTAGTAT--ACCCT--TTAATTT--TAAGAGTAAC----GGGTATAAAA------------AT--T-A----C------------------------------------------A----AAATA----A----------TG-------------C--------------------------------------------------------------------T------------TAATATGAGATTTT--G-----------------------------------------------------A---------ATAT--------------TTCTGTATAT-TCC----A------------------------------------AAGGTAT-------------------------------------------------------------------------GTATTTAGAA--AAGGTACCTTTCTTAAAATTCA----------------------------TTG------------------------------------------------------------------------------------------------AT-----------------CGTTTATTATAT-------------------------------CCC-----TCA-TCAC-----CAAATCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:50 PM