ID:

dwi_74

 Coordinate:

scf2_1100000004902:7276082-7276140 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

intergenic

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-25.2 -24.3 -24.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTCATGTCTTAAAGTAATAATAACTTAACTCTAAAAAGTCTTGTTTTCTTCTTGAGTTATGAGTGAATATATGGTTTTTGAAACATATGTCATGCGCTAACTCATCCAGAAAGCTTTGGCCTCATGTAGTCGTTAAAAAGATTATGTAAAAGTTCTCAT

***********************************..(((..(((((((...(((((((((.((((.((((((..........)))))))))).)).)))))))...)))))))...)))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 M020

head

 V118

embryo

 M045

female body

 V119

head
.....................................................................................TATGTCATGCGCTAACTCATCCA................................................... 23 0 1 126.00 126 17 33 62 10 4
.....................................................................................TATGTCATGCGCTAACTCATCC.................................................... 22 0 1 60.00 60 13 29 9 5 4
.....................................................................................TATGTCATGCGCTAACTCATC..................................................... 21 0 1 49.00 49 16 21 5 5 2
.....................................................................................TATGTCATGCGCTAACTCAT...................................................... 20 0 1 25.00 25 11 2 2 9 1
..................................................CTTGAGTTATGAGTGAATATAT....................................................................................... 22 0 1 17.00 17 13 0 2 1 1
.................................................TCTTGAGTTATGAGTGAATAT......................................................................................... 21 0 1 14.00 14 13 0 1 0 0
.....................................................................................TATGTCATGCGCTAACTCA....................................................... 19 0 1 14.00 14 0 14 0 0 0
..................................................CTTGAGTTATGAGTGAATAT......................................................................................... 20 0 1 11.00 11 11 0 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATCCT................................................... 23 1 1 9.00 9 0 9 0 0 0
..................................................CTTGAGTTATGAGTGAATATATG...................................................................................... 23 0 1 6.00 6 1 0 5 0 0
.................................................TCTTGAGTTATGAGTGAATATAA....................................................................................... 23 1 1 5.00 5 3 0 2 0 0
.......................................................................................TGTCATGCGCTAACTCATCCAG.................................................. 22 0 1 5.00 5 3 0 1 1 0
.................................................TCTTGAGTTATGAGTGAATAA......................................................................................... 21 1 1 4.00 4 4 0 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATA..................................................... 21 1 1 4.00 4 1 1 0 0 2
.................................................TCTTGAGTTATGAGTGAAT........................................................................................... 19 0 1 4.00 4 4 0 0 0 0
...................................................TTGAGTTATGAGTGAATATATG...................................................................................... 22 0 1 4.00 4 1 0 3 0 0
..................................................CTTGAGTTATGAGTGAATATAA....................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................CTTGAGTTATGAGTGAATATA........................................................................................ 21 0 1 4.00 4 4 0 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATCA.................................................... 22 1 1 3.00 3 1 1 1 0 0
......................................................................................ATGTCATGCGCTAACTCATCC.................................................... 21 0 1 3.00 3 0 0 1 2 0
.................................................TCTTGAGTTATGAGTGAATATATG...................................................................................... 24 0 1 3.00 3 2 0 1 0 0
.................................................TCTTGAGTTATGAGTGAATATA........................................................................................ 22 0 1 3.00 3 2 0 1 0 0
.....................................................................................TATGTCATGCGCTAACTCATCCAT.................................................. 24 1 1 2.00 2 1 0 1 0 0
.................................................TCTTGAGTTATGAGTGAATATAT....................................................................................... 23 0 1 2.00 2 2 0 0 0 0
......................................................................................ATGTCATGCGCTAACTCAT...................................................... 19 0 1 2.00 2 0 0 0 2 0
.................................................TCTTGAGTTATGAGTGAATA.......................................................................................... 20 0 1 2.00 2 2 0 0 0 0
......................................................................................ATGTCATGCGCTAACTCATCCAA.................................................. 23 1 1 1.00 1 0 0 0 1 0
..................................................CTTGAGTTATTAGTGAATATATG...................................................................................... 23 1 1 1.00 1 0 0 1 0 0
....................................................................................CTATGTCATGCGCTAACTCATCCA................................................... 24 1 1 1.00 1 0 0 1 0 0
.....................................................................................TATGTCATGTGCTAACTCATCCA................................................... 23 1 1 1.00 1 0 0 1 0 0
..................................................CTTGAGTTATGAGTGAATATC........................................................................................ 21 1 1 1.00 1 1 0 0 0 0
.................................................TCTTGAGTTATGAGTGAATATAAA...................................................................................... 24 2 1 1.00 1 1 0 0 0 0
.....................................................................................TATGTCATGCGCTAAATCATCCA................................................... 23 1 1 1.00 1 0 1 0 0 0
........................................................................................GTCATGCGCTAACTCATCCA................................................... 20 0 1 1.00 1 0 0 0 1 0
.....................................................................................TATGTCATGCGCTAACTCATCCC................................................... 23 1 1 1.00 1 0 1 0 0 0
.....................................................................................TACGTCATGCGCTAACTCATCCA................................................... 23 1 1 1.00 1 0 0 1 0 0
......................................................................................ATGTCATGCGCTAACTCATCCA................................................... 22 0 1 1.00 1 0 0 0 1 0
.....................................................................................TATGTCATGCGCTAACTCATCCAA.................................................. 24 1 1 1.00 1 0 0 1 0 0
.................................................TCTTGAGTTATGAGTGAATAAA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATCCAAA................................................. 25 1 1 1.00 1 1 0 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATCCAAAA................................................ 26 1 1 1.00 1 0 0 0 1 0
.................................................TCTTGAGTTATGAGTGAATATC........................................................................................ 22 1 1 1.00 1 1 0 0 0 0
..................................................CTTGAGTTATGAGTGAATATATAAA.................................................................................... 25 3 1 1.00 1 0 0 1 0 0
..................................................CTTGAGTTATGAGTGAATATATGGTT................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................TATGTCATGCGATAACTAATCCA................................................... 23 2 1 1.00 1 0 0 1 0 0
.................................................TCTTGAGTTATGAGTGAATATATGGTT................................................................................... 27 0 1 1.00 1 0 0 1 0 0
.....................................................................................TATGTCATGCGCTAACTCATCT.................................................... 22 1 1 1.00 1 0 1 0 0 0
.....................................................................................TATGTCATGCGCTAACTCATCAAA.................................................. 24 2 1 1.00 1 0 0 1 0 0
.....................................................................................TATGCCATGCGCTAACTCATCCA................................................... 23 1 1 1.00 1 0 0 1 0 0
.....................................................................................TATGACATGCGCTAACTCATCCA................................................... 23 1 1 1.00 1 0 1 0 0 0
................................................TTCTTGAGTTATGAGTGAATATAA....................................................................................... 24 1 1 1.00 1 1 0 0 0 0
.....................................................................................TATGTCATGCGCCAACTCATC..................................................... 21 1 1 1.00 1 1 0 0 0 0

Anti-sense strand reads

AAGTACAGAATTTCATTATTATTGAATTGAGATTTTTCAGAACAAAAGAAGAACTCAATACTCACTTATATACCAAAAACTTTGTATACAGTACGCGATTGAGTAGGTCTTTCGAAACCGGAGTACATCAGCAATTTTTCTAATACATTTTCAAGAGTA

************************************..(((..(((((((...(((((((((.((((.((((((..........)))))))))).)).)))))))...)))))))...)))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body
...................................................................................GTGTCCAGTAGGCGATTGA......................................................... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:7276032-7276190 + dwi_74 confident TTCATGTCTTAAAGTAATAATAACTTAACTCTAAAAAGTCTTGTTTTCTTCTTGAGTTATGAGTGAATATATGGTTTTTGAAACATATGTCATGCGCTAACTCATCCAGAAAGCTTTGGCCTCATGTAGTCGTTAAAAAGATTATGTAAAAGTTCTCAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTCATGTCTTAAAGTAATAATAACTTAACTCTAAAAAGTCTTGTTTTCTTCTTGAGTTATGAGTGAATATATGGTTTTTGAAACATATGTCATGCGCTAACTCATCCAGAAAGCTTTGGCCTCATGTAGTCGTTAAAAAGATTATGTAAAAGTTCTCATSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................TATGTCATGCGCTAACTCATCCA...................................................231126.00126331017624
.....................................................................................TATGTCATGCGCTAACTCATCC....................................................22160.00602951394
.....................................................................................TATGTCATGCGCTAACTCATC.....................................................21149.00492151652
.....................................................................................TATGTCATGCGCTAACTCAT......................................................20125.0025291121
..................................................CTTGAGTTATGAGTGAATATAT.......................................................................................22117.0017011321
.................................................TCTTGAGTTATGAGTGAATAT.........................................................................................21114.0014001310
.....................................................................................TATGTCATGCGCTAACTCA.......................................................19114.0014140000
..................................................CTTGAGTTATGAGTGAATAT.........................................................................................20111.0011001100
.....................................................................................TATGTCATGCGCTAACTCATCCT...................................................2319.00990000
..................................................CTTGAGTTATGAGTGAATATATG......................................................................................2316.00600150
.................................................TCTTGAGTTATGAGTGAATATAA.......................................................................................2315.00500320
.......................................................................................TGTCATGCGCTAACTCATCCAG..................................................2215.00501310
.................................................TCTTGAGTTATGAGTGAATAA.........................................................................................2114.00400400
.....................................................................................TATGTCATGCGCTAACTCATA.....................................................2114.00410102
.................................................TCTTGAGTTATGAGTGAAT...........................................................................................1914.00400400
...................................................TTGAGTTATGAGTGAATATATG......................................................................................2214.00400130
..................................................CTTGAGTTATGAGTGAATATAA.......................................................................................2214.00400400
..................................................CTTGAGTTATGAGTGAATATA........................................................................................2114.00400400
.....................................................................................TATGTCATGCGCTAACTCATCA....................................................2213.00310110
......................................................................................ATGTCATGCGCTAACTCATCC....................................................2113.00302010
.................................................TCTTGAGTTATGAGTGAATATATG......................................................................................2413.00300210
.................................................TCTTGAGTTATGAGTGAATATA........................................................................................2213.00300210
.....................................................................................TATGTCATGCGCTAACTCATCCAT..................................................2412.00200110
.................................................TCTTGAGTTATGAGTGAATATAT.......................................................................................2312.00200200
......................................................................................ATGTCATGCGCTAACTCAT......................................................1912.00202000
.................................................TCTTGAGTTATGAGTGAATA..........................................................................................2012.00200200
......................................................................................ATGTCATGCGCTAACTCATCCAA..................................................2311.00101000
..................................................CTTGAGTTATGAGTGAATATC........................................................................................2111.00100100
.................................................TCTTGAGTTATGAGTGAATATAAA......................................................................................2411.00100100
........................................................................................GTCATGCGCTAACTCATCCA...................................................2011.00101000
.....................................................................................TATGTCATGCGCTAACTCATCCC...................................................2311.00110000
......................................................................................ATGTCATGCGCTAACTCATCCA...................................................2211.00101000
.....................................................................................TATGTCATGCGCTAACTCATCCAA..................................................2411.00100010
.................................................TCTTGAGTTATGAGTGAATATC........................................................................................2211.00100100
..................................................CTTGAGTTATGAGTGAATATATAAA....................................................................................2511.00100010
..................................................CTTGAGTTATGAGTGAATATATGGTT...................................................................................2611.00100100
.................................................TCTTGAGTTATGAGTGAATATATGGTT...................................................................................2711.00100010
.....................................................................................TATGTCATGCGCTAACTCATCT....................................................2211.00110000
................................................TTCTTGAGTTATGAGTGAATATAA.......................................................................................2411.00100100

Generated: 10/20/2015 at 06:56 PM