ID:

dwi_720

 Coordinate:

scf2_1100000004511:9980780-9980930 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-20.6 -20.4 -20.4

Flybase annnotation

exon [dwil_GLEANR_16983:2]; CDS [Dwil\GK16616-cds]; intron [Dwil\GK16616-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------######--------------------------------------------
ATTTCAAAACGACCTTTAGTTACTCTTTACGAGTACGAGTACGAGTAGGAGTTTCACTGTGATAAAGAAGACTTAAACGCGATCCACTTCAATCGTTACTCAATTTTGGCTGTGGTGTTAAAAAGTATGGAAAATGACCCCTAAAGTTATAACAAGCATTTTGAACTTCCTTGTTATTCCTTATTCCCATTCTACTTACAGGCTTAGCGAAATAGATGAAAAGAGAAAAATTCTATTTTTAATTTGTTTGC
**************************************************......((((((...((((.........(((((........)))))((((...(((((((......))))))))))).((........))...(((..((((((((.............))))))))..))).......))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V119
head
..................................................................................................CTCAATTTTGGCTGTGGTGT..................................................................................................................................... 20 0 1 1.00 1 1 0 0
................................................................................................................TGGTGTAAAGAAGTATGGAG....................................................................................................................... 20 3 10 0.20 2 0 1 1
.....................................................................................................AAATTTGGCCGTGGTGTT.................................................................................................................................... 18 2 7 0.14 1 1 0 0
..................................................................................................CTCAATGTTGGCCGTGGTGG..................................................................................................................................... 20 3 10 0.10 1 1 0 0

Anti-sense strand reads

TAAAGTTTTGCTGGAAATCAATGAGAAATGCTCATGCTCATGCTCATCCTCAAAGTGACACTATTTCTTCTGAATTTGCGCTAGGTGAAGTTAGCAATGAGTTAAAACCGACACCACAATTTTTCATACCTTTTACTGGGGATTTCAATATTGTTCGTAAAACTTGAAGGAACAATAAGGAATAAGGGTAAGATGAATGTCCGAATCGCTTTATCTACTTTTCTCTTTTTAAGATAAAAATTAAACAAACG
**************************************************......((((((...((((.........(((((........)))))((((...(((((((......))))))))))).((........))...(((..((((((((.............))))))))..))).......))))..))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
.........................................................................................................................................................TTCGTAAAACTTGAAGGAACA............................................................................. 21 0 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:9980730-9980980 - dwi_720 ATTTCAAAAC-GACCTTTAGTTACTCTTTACGAGTACGAGTACGAGTAGGAGTTTCACTGTGATAAAGAAGACTTAAACGCGATCCACTTCAATCGTTACTCAATTTTGGCTGTGGTGTTAAAAAGTATGGAAAATGACCCCTAAAGTTATAACAAGCATTTTGAACTTCCTTGTTATTCCTTATTCCCATTCTACTTACAGGCTTAGCGAAATAGATGAAAAGAGAAAAATTCTATTTTTAATTTGTTTGC
dp5 XR_group8:9171003-9171043 + ATATCGAACATGGGATGCTCTTGCTCTTTTTTAGAACGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSec2 scaffold_0:1819489-1819540 + AATGCAGAAGTGGAATAC-------------------------GCTTAGTATTTTTACTAAAA-AAAAAAAACTTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATTTCAAAAC-GACCTTTAGTTACTCTTTACGAGTACGAGTACGAGTAGGAGTTTCACTGTGATAAAGAAGACTTAAACGCGATCCACTTCAATCGTTACTCAATTTTGGCTGTGGTGTTAAAAAGTATGGAAAATGACCCCTAAAGTTATAACAAGCATTTTGAACTTCCTTGTTATTCCTTATTCCCATTCTACTTACAGGCTTAGCGAAATAGATGAAAAGAGAAAAATTCTATTTTTAATTTGTTTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................CTCAATTTTGGCTGTGGTGT.....................................................................................................................................2011.00101000
dp5
ATATCGAACATGGGATGCTCTTGCTCTTTTTTAGAACGTGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droSec2
AATGCAGAAGTGGAATAC-------------------------GCTTAGTATTTTTACTAAAA-AAAAAAAACTTAGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads

Generated: 05/17/2015 at 11:44 PM