ID:

dwi_696

 Coordinate:

scf2_1100000004511:9248583-9248733 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.2 -18.1 -18.0

Flybase annnotation

CDS [Dwil\GK16662-cds]; exon [dwil_GLEANR_17027:6]; intron [Dwil\GK16662-in]

No Repeatable elements found

mature
  1. scf2_1100000004378:4154-4178 -
  2. dwi_696  scf2_1100000004511:9248584-9248608 -
  3. scf2_1100000004515:3812664-3812688 +
  4. scf2_1100000004542:4497-4521 +
  5. scf2_1100000004585:305602-305626 +
  6. scf2_1100000004585:390449-390473 -
  7. scf2_1100000004585:393465-393489 -
  8. scf2_1100000004585:461125-461149 -
  9. scf2_1100000004585:467662-467686 +
  10. scf2_1100000004762:5007830-5007854 -
  11. scf2_1100000004824:64165-64189 -
  12. scf2_1100000004943:1912597-1912621 +
  13. scf2_1100000004961:3035451-3035475 -
  14. scf2_1100000004963:100749-100773 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTCGACCATAACCGAAGAGGAGGAACAACAATTGCAGTTCCGAGCTCCAGGTAATATAGTTATTTATTATAAAATCCTCTTTAATGGACTCCATTAAATATTCTCCACCTATGTACAGTGGTTCAATAGTATTATAAAAACCATAAATCGCAAATAAATGTTGACACTTTTCCATTGTCTGCAAATAAGTGTCTTTCACTCACACAATAAAAAAAACTCAGACAGAAACTGTTTAGCTCGCTCGCGCTCTG
**************************************************((((((........)))))).........((((((((...)))))))).............((((((((((.((((((.((((...................))))..)))))).......)))))))..)))....((((.....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCAGAC............................ 29 0 8 3.25 26 26 0 0
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCAGA............................. 28 0 8 3.25 26 26 0 0
...............................................................................................................................................................................TGTCTGCAAATAAGTGTCTTTCACT................................................... 25 0 14 2.00 28 23 5 0
...............................................................................................................................................................................................................TAAAAAAAACTCAGACAGAAACTGTTT................. 27 0 11 1.18 13 11 1 1
........................................................................................................................................................................................................CACACAATAAAAAAAACTCAGACAGAAAC...................... 29 0 9 1.11 10 10 0 0
............................................................................................................................AATAGTATTGTAAAAACCA............................................................................................................ 19 1 1 1.00 1 0 1 0
....................................................................................................................................................................................................CACTCACACAATAAAAAAAACTCAGACA........................... 28 0 8 0.75 6 6 0 0
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCAG.............................. 27 0 8 0.75 6 6 0 0
..........................................................................................................................................................................TCCATTGTCTGCAAATAAGTGTCTTT....................................................... 26 0 16 0.63 10 10 0 0
...................................................................................................................................................................................................TCACTCACACAATAAAAAAAACTCAGACA........................... 29 0 8 0.63 5 5 0 0
....................................................................................................................................................................................................CACTCACACAATAAAAAAAACTCAGACAG.......................... 29 0 8 0.50 4 4 0 0
...................................................................................................................................................................................................TCACTCACACAATAAAAAAAACTCAGA............................. 27 0 8 0.50 4 4 0 0
...............................................................................................................................................................................................TCTTTCACTCACACAATAAAAAAAACT................................. 27 0 9 0.44 4 4 0 0
........................................................................................................................................................................................................CACACAATAAAAAAAACTCAGACAGAAA....................... 28 0 9 0.44 4 2 2 0
...................................................................................................................................................................................................TCACTCACACAATAAAAAAAACTCAGAC............................ 28 0 8 0.38 3 3 0 0
.........................................................................................................................................................................................TAAGTGTCTTTCACTCACACAATAAAA....................................... 27 0 12 0.33 4 4 0 0
...........................................................................................................................................................TAACTTTGACACTTTTCCATTGT......................................................................... 23 3 3 0.33 1 0 1 0
...........................................................................................................................................................................CCATTGTCTGCAAATAAGTGTCTTT....................................................... 25 0 16 0.31 5 5 0 0
..........................................................................................................................................................................TCCATTGTCTGCAAATAAGTGTCTT........................................................ 25 0 16 0.31 5 4 1 0
...............................................................................................................................................................................................................TAAAAAAAACTCAGACAGAAACTGT................... 25 0 11 0.27 3 2 1 0
.......................................................................................................................................................................TTTTCCATTGTCTGCAAATAAGTGTCT......................................................... 27 0 15 0.27 4 3 1 0
....................................................................................................................................................................................................CACTCACACAATAAAAAAAACTCAGA............................. 26 0 8 0.25 2 2 0 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGTCTT........................................................ 26 0 16 0.25 4 4 0 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGTCTTT....................................................... 27 0 16 0.25 4 3 1 0
...............................................................................................................................................................................TGTCTGCAAATAAGTGTCTTTCACTCA................................................. 27 0 12 0.25 3 3 0 0
.......................................................................................................................................................................................................TCACACAATAAAAAAAACTCAGACAG.......................... 26 0 9 0.22 2 2 0 0
.............................................................................................................................................................................................TGTCTTTCACTCACACAATAAAAAAAAC.................................. 28 0 9 0.22 2 2 0 0
.................................................................................................................................................................TGACACTTTTCCATTGTCTGCAAATAAG.............................................................. 28 0 14 0.21 3 3 0 0
................................................................................................................................................................................GTCTGCAAATAAGTGTCTTTCACT................................................... 24 0 14 0.21 3 3 0 0
...................................................................................................................................................................................TGCAAATAAGTGTCTTTCACTCACACAA............................................ 28 0 10 0.20 2 2 0 0
........................................................................................................................................................................TTTCCATTGTCTGCAAATAAGTGTCTTT....................................................... 28 0 15 0.20 3 3 0 0
..............................................................................................................................................................TGTTGACACTTTTCCATTGTCTGCAAA.................................................................. 27 0 15 0.20 3 3 0 0
.........................................................................................................................................................................................TAAGTGTCTTTCACTCACACAATAAAAAA..................................... 29 0 12 0.17 2 2 0 0
...................................................................................................................................................................................TGCAAATAAGTGTCTTTCACTCACA............................................... 25 0 13 0.15 2 2 0 0
..............................................................................................................................................................TGTTGACACTTTTCCATTGTCTGCA.................................................................... 25 0 15 0.13 2 2 0 0
.......................................................................................................................................................................TTTTCCATTGTCTGCAAATAAGTGTC.......................................................... 26 0 15 0.13 2 2 0 0
.......................................................................................................................................................................TTTTCCATTGTCTGCAAATAAGTGT........................................................... 25 0 15 0.13 2 0 2 0
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCAGAA............................ 29 1 8 0.13 1 1 0 0
...................................................................................................................................................................................................TCACTCACACAATAAAAAAAACTCAG.............................. 26 0 8 0.13 1 1 0 0
................................................................................................................................................................................................CTTTCACTCACACAATAAAAAAAACTCA............................... 28 0 8 0.13 1 1 0 0
.................................................................................................................................................................................................TTTCACTCACACAATAAAAAAAACTCA............................... 27 0 8 0.13 1 1 0 0
.....................................................................................................................................................................................................ACTCACACAATAAAAAAAACTCAGACA........................... 27 0 8 0.13 1 1 0 0
....................................................................................................................................................................................................CACTCACACAATAAAAAAAACTCAGAC............................ 27 0 8 0.13 1 1 0 0
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCA............................... 26 0 8 0.13 1 1 0 0
.....................................................................................................................................................................................................ACTCACACAATAAAAAAAACTCAGAC............................ 26 0 8 0.13 1 1 0 0
...................................................................................................................................................................................................TCACTCACACAATAAAAAAAACTCA............................... 25 0 8 0.13 1 1 0 0
...............................................................................................................................................................................................TCTTTCACTCACACAATAAAAAGAACTCA............................... 29 1 8 0.13 1 0 1 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGTCT......................................................... 25 0 16 0.13 2 1 1 0
..................................................................................................................................................................................................TTCACTCACACAATAAAAAAAACTCATAC............................ 29 1 8 0.13 1 1 0 0
..........................................................................................................................................................................TCCATTGTCTGCAAATAAGTGTCT......................................................... 24 0 16 0.13 2 1 1 0
.........................................................................................................................................................ATAAATGTAGACACTGTTCTA............................................................................. 21 3 16 0.13 2 0 0 2
...............................................................................................................................................................................................TCTTTCACTCACACAATAAAAAAAAC.................................. 26 0 9 0.11 1 1 0 0
...............................................................................................................................................................................................TCTTTCACTCACACAATAGAAAAAACTC................................ 28 1 9 0.11 1 1 0 0
...............................................................................................................................................................................................TCTTTCACTCACACAATAAAAAAAACTC................................ 28 0 9 0.11 1 1 0 0
.......................................................................................................................................................................................................TCACACAATAAAAAAAACTCAGAC............................ 24 0 9 0.11 1 1 0 0
.................................................................................................................................................................................................TTTCACTCACACAATAAAAAAAACTC................................ 26 0 9 0.11 1 1 0 0
.......................................................................................................................................................................................................TCACACAATAAAAAAAACTCAG.............................. 22 0 9 0.11 1 1 0 0
.......................................................................................................................................................................................................TCACACAATAAGAAAAACTCAGACAGA......................... 27 1 9 0.11 1 1 0 0
..........................................................................................................................................................................................................CACAATAAAAAAAACTCAGACAGAAAC...................... 27 0 9 0.11 1 1 0 0
........................................................................................................................................................................................................CACACAATAAAAAAAACTCAGAC............................ 23 0 9 0.11 1 1 0 0
........................................................................................................................................................................................................CACACAATAAAAAAAACTCAGACAG.......................... 25 0 9 0.11 1 1 0 0
.........................................................................................................................................................................................................ACACAATAAAAAAAACTCAGACAGAAAC...................... 28 0 9 0.11 1 1 0 0
...................................................................................................................................................................................TGCAAATAAGTGTCTTTCACTCACACAAT........................................... 29 0 10 0.10 1 1 0 0
.................................................................................................................................................................................................TTTCACTCACAGAATAAAAAAAACT................................. 25 1 10 0.10 1 1 0 0
.............................................................................................................................................................................................................AATAAAAAAAACTCAGACAGAAAC...................... 24 0 10 0.10 1 0 1 0
.............................................................................................................................................................................................................AATAAAAAAAACTCAGACAGAAACTGTT.................. 28 0 10 0.10 1 1 0 0
...................................................................................................................................................................................TGCAAATAAGTGTCTTTCACTCACACA............................................. 27 0 10 0.10 1 1 0 0
.............................................................................................................................................................................................................AATAAAAAAAACTCAGACAGAAACTGT................... 27 0 10 0.10 1 1 0 0
.............................................................................................................................................................................................................AATAAAAAAAACTCAGACA........................... 19 0 10 0.10 1 1 0 0
...............................................................................................................................................................................................................TAAAAAAAACTCAGACAGAAACTGTT.................. 26 0 11 0.09 1 1 0 0
...............................................................................................................................................................................................................TAAAAAAAACTCAGACAGAA........................ 20 0 11 0.09 1 0 1 0
............................................................................................................................................................................................GTGTCTTTCACTCACACAATAAAAA...................................... 25 0 12 0.08 1 1 0 0
.............................................................................................................................................................................................TGTCTTTCACTCACACAATAAAAA...................................... 24 0 12 0.08 1 1 0 0
.........................................................................................................................................................................................TAAGTGTCTTTCACTCACACAATAAAAA...................................... 28 0 12 0.08 1 1 0 0
.........................................................................................................................................................................................TAAGTGTCTTTCACTCACACAATAAA........................................ 26 0 12 0.08 1 0 1 0
....................................................................................................................................................................................GCAAATAAGTGTCTTTCACTCACACA............................................. 26 0 12 0.08 1 1 0 0
..................................................................................................................................................................................CTGCAAATAAGTGTCTTTCACTCACA............................................... 26 0 12 0.08 1 1 0 0
.........................................................................................................................................................................................TAAGTGTCTTTCACTCACACAATA.......................................... 24 0 13 0.08 1 1 0 0
.................................................................................................................................................................................TCTGCAAATAAGTGTCTTTCACT................................................... 23 0 14 0.07 1 1 0 0
...............................................................................................................................................................................TGTCTGCGAATAAGTGTCTTTCAC.................................................... 24 1 14 0.07 1 1 0 0
...............................................................................................................................................................................TGTCTGCAAATAAGTGTCTTTCAC.................................................... 24 0 14 0.07 1 1 0 0
..................................................................................................................................................................GACACTTTTCCATTGTCTGCAAATAAG.............................................................. 27 0 14 0.07 1 1 0 0
.................................................................................................................................................................TGACACTTTTCCATTGTCTGCAAATA................................................................ 26 0 14 0.07 1 1 0 0
...............................................................................................................................................................................TGTCTGCAAATAAGAGTCTTTCACT................................................... 25 1 14 0.07 1 1 0 0
.....................................................................................................................................................................................CAAATAAGTGTCTTTCACTCACACAAT........................................... 27 0 15 0.07 1 1 0 0
........................................................................................................................................................................TTTCCATTGTCTGCAAATAAGTGTC.......................................................... 25 0 15 0.07 1 0 1 0
........................................................................................................................................................................TTTCCATTGTCTGCAAATAAGTGTCT......................................................... 26 0 15 0.07 1 0 1 0
......................................................................................................................................................................CTTTTCCATTGTCTGCAAATAAGTGTCT......................................................... 28 0 15 0.07 1 1 0 0
....................................................................................................................................................................CACTTTTCCATTGTCTGCAAATAAG.............................................................. 25 0 15 0.07 1 1 0 0
.....................................................................................................................................................................................CAAATAAGTGTCTTTCACTCACACA............................................. 25 0 15 0.07 1 0 1 0
...........................................................................................................................................................................CCATTGTCTGCAAATAAGTGTCTT........................................................ 24 0 16 0.06 1 1 0 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGT........................................................... 23 0 16 0.06 1 0 1 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGTCTTTA...................................................... 28 1 16 0.06 1 1 0 0
..............................................................................................................................................................TGTTGACACTTTTCCATTGTCT....................................................................... 22 0 16 0.06 1 0 1 0
..........................................................................................................................................................................TCCATTGTCTGCAAATAAGTGTCTTTA...................................................... 27 1 16 0.06 1 1 0 0
.........................................................................................................................................................................TTCCATTGTCTGCAAATAAGTGTCTTTG...................................................... 28 1 16 0.06 1 0 1 0
.........................................................................................................................................................................TTCCATTGTCTACAAATAAGTGTCT......................................................... 25 1 18 0.06 1 1 0 0
.......................................................................................AATGCATTAAATATTCTCCAA............................................................................................................................................... 21 3 20 0.05 1 1 0 0

Anti-sense strand reads

GAGCTGGTATTGGCTTCTCCTCCTTGTTGTTAACGTCAAGGCTCGAGGTCCATTATATCAATAAATAATATTTTAGGAGAAATTACCTGAGGTAATTTATAAGAGGTGGATACATGTCACCAAGTTATCATAATATTTTTGGTATTTAGCGTTTATTTACAACTGTGAAAAGGTAACAGACGTTTATTCACAGAAAGTGAGTGTGTTATTTTTTTTGAGTCTGTCTTTGACAAATCGAGCGAGCGCGAGAC
**************************************************((((((........)))))).........((((((((...)))))))).............((((((((((.((((((.((((...................))))..)))))).......)))))))..)))....((((.....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body
...................................................................................................................................................................TGTGAAAAGGTAACAGACGTTTAT................................................................ 24 0 15 0.73 11 10 0 1
...................................................................................................................................................................TGTGAAAAGGTAACAGACGTTTATT............................................................... 25 0 15 0.33 5 5 0 0
............................GTTAACGCCAGGGCTCGCGG........................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 1
...........................................................................................................................................................................GGTAACAGACGTTTATTCACAGAA........................................................ 24 0 16 0.19 3 0 3 0
....................................................................................................................................................................GTGAAAAGGTAACAGACGTTTAT................................................................ 23 0 15 0.13 2 0 2 0
....................................................................................................................................................................................................GTGAGTGTGTTATTTTTTTTGAGTCT............................. 26 0 8 0.13 1 1 0 0
....................................................................................................................................................................................................GTGAGTGTGTTATTTTTTTTGAGT............................... 24 0 8 0.13 1 1 0 0
....................................................................................................................................................................................................GTGAGTGTGTTATTTTTTTTGAGTCTG............................ 27 0 8 0.13 1 1 0 0
.......................................................................................................................................................................................................AGTGTGTTATTTTTTTTGAGT............................... 21 0 9 0.11 1 1 0 0
....................................................................................................................................................................................................GTGAGTGTGTTATTTTTTTTG.................................. 21 0 9 0.11 1 1 0 0
.......................................................................................................................................................................................................AGTGTGTTATTTTTTTTG.................................. 18 0 10 0.10 1 1 0 0
.....................................................................................................................................................................................................................TTTGAGTCTGTCTTTGACAAA................. 21 0 11 0.09 1 1 0 0
.................................................................................................................................................................................AGACGTTTATTCACAGAAAGTGAGTGT............................................... 27 0 12 0.08 1 0 1 0
...............................................................................................................................................................................................AGAAAGTGAGTGTGTTATTTT....................................... 21 0 12 0.08 1 0 1 0
................................................................................................................................................................................................GAAAGTGAGTGTGTTATTTTT...................................... 21 0 13 0.08 1 0 1 0
...................................................................................................................................................................................ACGTTTATTCACAGAAAGTGAGTGT............................................... 25 0 13 0.08 1 0 1 0
...................................................................................................................................................................TGTGAAAAGGTAACAGACGTTTATTC.............................................................. 26 0 15 0.07 1 0 1 0
......................................................................................................................................................................AAAAAGGTAACAGACGTTTATTCACAG.......................................................... 27 1 15 0.07 1 0 1 0
........................................................................................................................................................................AAAGGTAACAGACGTTTATTCACAG.......................................................... 25 0 15 0.07 1 1 0 0
..........................................................................................................................................................................AGGTAACAGACGTTTATTCACA........................................................... 22 0 16 0.06 1 0 1 0
.........................................................................................................................................................................AAGGTAACAGACGTTTATTCACAGAA........................................................ 26 0 16 0.06 1 0 1 0
..........................................................................................................................................................................AGGTAACAGACGTTTATTCACAGA......................................................... 24 0 16 0.06 1 0 1 0
..............................................................................................................................................................ACAACTGTGAAAAGGTAACAGA....................................................................... 22 0 16 0.06 1 0 1 0
...........................................................................................................................................................................GGTAACAGACGTTTATTCACAGA......................................................... 23 0 16 0.06 1 0 1 0
..................................................................................................................................................................CTGTGAAAAGGTAACAGACGT.................................................................... 21 0 16 0.06 1 0 0 1
....................................................................................................................................................................GTGAAAAGGTAACAGACGT.................................................................... 19 0 17 0.06 1 1 0 0
....................................................................................................................................................................GTGAAAAGGTAACAGACGTT................................................................... 20 0 17 0.06 1 0 1 0
...................................................................................................................................................................TGTGAAAAGGTAACAGACGTT................................................................... 21 0 17 0.06 1 1 0 0
..............................................................................................................................................................................AACAGACGTTTATTCACAGAA........................................................ 21 0 19 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:9248533-9248783 - dwi_696 CTCGACCATAACCGAAGAGGAGGAACAACAATTGCAGT---------TCCGAGC---------TCCAGGTAATATAGTTATTTATTATAA-AATCCTCTTTAATGGACTCCATTAAATATTCTCCACCTATGT-----ACAG-------TGGTT-------------------------------------------------CAATAGTAT----TATAAAAACCATAAATCGCAAATAAATGTTGACACTTTTCCATTGTCTGCAAAT-AAGTGTCTTTCACTCACACAATAA-AAAAAACTCAGACAGAAACTGTTT---------------------AGCTCGCTC-GCGCTCTG
droVir3 scaffold_13049:9659188-9659249 - CTCCACCATCACCGAGGAGGAGGAGCAG------CAAA---------GCAAAGCAGCAGCTTCCGCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-A-------------------------TACAG
droMoj3 scaffold_6500:29812397-29812590 - GATATT-------------------------------------------------------------------TCAATTGTTCTTTATAACTATTCTTGTCGATGGACTACCTTCATTG------AAATATGTACTGTATAGTG-------ACTCTCG-ACTTGCCACACC---------------------------------------AT----TAAAACAAACATAGCTCGCAAATAACTGTTGACACTTTTTCGTTGTCTGCAAAT-AAGTGTCTTTCACTGACACAATC-AAAAAGACTCAGACAGAAACTGATT---------------------------------------
droGri2 scaffold_15110:17427313-17427340 - TTCAACCATCACCGAGGAGGAGGAGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_369:10126-10263 - TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCAGACCTCGCAAATAACGGTTGACACTTTCGGCGTGTCTGATAAAAACCTCTCGTTGACGGACACATTGAGAAAAGGGACTGAAGAGACCCGATCAAATCTG-TTT--TTGC-T-CAACTCGCTCTTCGCTCAA
droPer2 scaffold_168:63596-63720 - TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCAGACCTCGCAAATAACGGTTGACACTTTCGGCATGTCTGATAAAAACCTCTCATTGACGGACACAGTG--AAAAG-----------ACCCGATCAAATCTG-TTT--TTGC-T-CAACTCGCTCTTCGCTCAA
droAna3 scaffold_9113:119-316 + ATGGCT-------------------------------------------------------------------AT--------------------------------------------------------------------CTACAATTT-TTTTAAAGC-TTTA--------CTAAA--CAAGCTGAACCCGCATAGGTTAGAT-------A-CGTTTTAAACATAGCTTGCAACTAACTGTTAACCGATTCGAGCGGTCTCAAAAT-AAGTGTTTGTCACTGAGACTTTGAGCAAAAAGTCTGAGAGCAACCGATTGAGTT--GCTC--GTAAACAAATTTTGCTC-GCGCTCAG
droBip1 scf7180000391499:17069-17234 - TGTAT---------------------------------------------------------------------------------------------------------------------------------------AGTG-------TCT--CA-GTTTTTCGTACTAATAC-----------------------------------------GAAGGCACCAGAGCTTGCAAATAACTGTCGACCGTTTCTTGTTGTCTGAAAAT-AAGTGTCTCTTTCTGACTCTTTACGAAAAGACTCAGAGAGCAACCGTTTCATGG--GTTC--TTTAAT-GTGCTCGCTC-GCGCTCAG
droKik1 scf7180000302221:835-1059 - CAGGG------------ATCGCAAATAA------GAGT---------TTTAAGTAAA-ATAAATATATG---------------C--------------------------------------------ATAT-----TTAG-------CTTTTTTCATAAC-TTTT--------GCAAA--TTCTATGCATATGCATA-----------------TGGTAAAAGCAGAGCTTGCAAAAAACTGTCGACCGTTTCTAATTGTCTGCATAT-ATCTGTCTCTCTCTCACTCTTTACGAAAAGACTCAGAGAGCACCCGTTC-ATGA--GTTCTTGGAA-T-CAGCTCGCGC-GCGTTCAG
droFic1 scf7180000451454:10152-10294 - CAATATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATATCAGAGCTCGCAAATAACAGTCGACCGTTTCTCGTTGTCTGCTAAT-AACAGTCTTCTCCTGACTCTTTACGAAAAGTCTCAGAGAACGACCGATG----A--GTTC--GTGAAT-GGGTTCGGTT-ACGCTCAG
droEle1 scf7180000487466:97606-97751 + TTCTATAATTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCGAAGCTCGCAAATAAATGTTGACCGATTCGTGCGGTCTCCAAAT-AAGTGTTTTTCTCTCAGACTTTGAGCAAAGAATCAGAGAGCAACCGATTGAATA---TTT--GTAAACAAATTTTGCTC-GCACTCAG
droRho1 scf7180000776960:10804-10983 - AATAATTTCCTTCAAA-------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT--------CGAAAGTAAAGCTAGATTTTTA-------------------TATATAAACCAGAGCTCGCAAATAACTGTCGACCGTTTCTCATTGTCTGCAAAT-AAGTGTCTTCTCCTGACTCTTTACGAAAAGACTCGGAGAGCAACCGATTTATGG--GTTC--TTGAAT-GAGCTCGCTC-GCGCTCAG
droBia1 scf7180000302512:131887-132083 - TTGTTT-------------------------------------------------------------------TAAACTCTTTTTTAAAATGATTTTT----------------------------TCTCTGT-----ATAG-------TTGTTTTTA---------------AAT--------------------------GA---AGT----TCTTTTTAAATAAGAGCTTGCAAATAACTGTCGACCGTTTCTCGTTGTCTGCAAAT-AAGTGTCTTTTCCTGACTCTTTACCAAAAGACTTAGAGAGCAATCGATTTATGG--ATTC--TTGAAT-GAGGTCGCTT-GCGCTCAG
droTak1 scf7180000415095:4334-4581 - GAACAAGA----------------------ATTGAATTCCCTACAGCCCAGT-----------------ATAAATATTTAGGTGAAACTA-AAT-CTCTTTGTTTG--TCTATTTAAAGATCAGTTTTTATTT-----TGAT-------TTGTT-------------------------------------------------AAAAGTTAAAAG-GATATAAATCATAGCTCGCAAATAACTGTTGACCGATTCGTGCGGTCCCCAAAT-AACTGTTTTTCTCTGAGACTTTGAGCAAACAATCAGAGAGCAACCGATGGAATT--GTTC--GTACAGAAATTTTGCTC-GCACTCAG
droEug1 scf7180000409039:34311-34419 + CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTCGCCAAAAACTGTTAACCTATTCATGCGGTCTAAAAAT-AAGTGTTTTGCACTCAGACTTAGAGCAAAAAGTCTG---------------------CTT--GTATACAAATTTTGCTC-GCGCTCAG
dm3 chr3L:5902656-5902694 + CTCCACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 3l:5815940-5816020 + CTCAACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAACAGGTACGACCATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TTC--TTGGCCA--TGTAGTTCCTAATTA--
droSec2 scaffold_2:5838441-5838521 + CTCAACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCGGAACAGGTACGACCATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TTC--TTGGCCA--TGTAGTTCCTAATTA--
droYak3 v2_chr2h_random_021:48257-48415 - CTTACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACCAGAGCTCGCAAATAACAGTTGACTGTTTCTTGCAGTCACCAAAT-AACTGTTTTTGGCGCACCACTTGCGCAGAAAATCAGACAAGAACCGTTCACCAGTGTCTC--TTGAACG--AATGGTCT-GCGCTC--
droEre2 scaffold_4784:8599787-8599866 + CTCCACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAACAGGTACGAACATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-T-C--CTGGCCA--TGTAGTTTTTAATTA--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTCGACCATAACCGAAGAGGAGGAACAACAATTGCAGT---------TCCGAGC---------TCCAGGTAATATAGTTATTTATTATAA-AATCCTCTTTAATGGACTCCATTAAATATTCTCCACCTATGT-----ACAG-------TGGTT-------------------------------------------------CAATAGTAT----TATAAAAACCATAAATCGCAAATAAATGTTGACACTTTTCCATTGTCTGCAAAT-AAGTGTCTTTCACTCACACAATAA-AAAAAACTCAGACAGAAACTGTTT---------------------AGCTCGCTC-GCGCTCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................TTCACTCACACAATAA-AAAAAACTCAGAC..................................................2983.2526026000
.......................................................................................................................................................................................................................................................................................TTCACTCACACAATAA-AAAAAACTCAGA...................................................2883.2526026000
...................................................................................................................................................................................................................................................................TGTCTGCAAAT-AAGTGTCTTTCACT..........................................................................25142.0028023050
....................................................................................................................................................................................................................................................................................................TAA-AAAAAACTCAGACAGAAACTGTTT---------------------..................27111.1813111010
.............................................................................................................................................................................................................................................................................................CACACAATAA-AAAAAACTCAGACAGAAAC............................................2991.1110010000
.........................................................................................................................................................................................................................................................................................CACTCACACAATAA-AAAAAACTCAGACA.................................................2880.75606000
.......................................................................................................................................................................................................................................................................................TTCACTCACACAATAA-AAAAAACTCAG....................................................2780.75606000
..............................................................................................................................................................................................................................................................TCCATTGTCTGCAAAT-AAGTGTCTTT..............................................................................26160.6310010000
........................................................................................................................................................................................................................................................................................TCACTCACACAATAA-AAAAAACTCAGACA.................................................2980.63505000
.........................................................................................................................................................................................................................................................................................CACTCACACAATAA-AAAAAACTCAGACAG................................................2980.50404000
........................................................................................................................................................................................................................................................................................TCACTCACACAATAA-AAAAAACTCAGA...................................................2780.50404000
....................................................................................................................................................................................................................................................................................TCTTTCACTCACACAATAA-AAAAAACT.......................................................2790.44404000
.............................................................................................................................................................................................................................................................................................CACACAATAA-AAAAAACTCAGACAGAAA.............................................2890.44402020
........................................................................................................................................................................................................................................................................................TCACTCACACAATAA-AAAAAACTCAGAC..................................................2880.38303000
.............................................................................................................................................................................................................................................................................T-AAGTGTCTTTCACTCACACAATAA-AA.............................................................27120.33404000
...............................................................................................................................................................................................................................................................CCATTGTCTGCAAAT-AAGTGTCTTT..............................................................................25160.31505000
..............................................................................................................................................................................................................................................................TCCATTGTCTGCAAAT-AAGTGTCTT...............................................................................25160.31504010
....................................................................................................................................................................................................................................................................................................TAA-AAAAAACTCAGACAGAAACTGT.........................................25110.27302010
...........................................................................................................................................................................................................................................................TTTTCCATTGTCTGCAAAT-AAGTGTCT................................................................................27150.27403010
.........................................................................................................................................................................................................................................................................................CACTCACACAATAA-AAAAAACTCAGA...................................................2680.25202000
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGTCTT...............................................................................26160.25404000
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGTCTTT..............................................................................27160.25403010
...................................................................................................................................................................................................................................................................TGTCTGCAAAT-AAGTGTCTTTCACTCA........................................................................27120.25303000
............................................................................................................................................................................................................................................................................................TCACACAATAA-AAAAAACTCAGACAG................................................2690.22202000
..................................................................................................................................................................................................................................................................................TGTCTTTCACTCACACAATAA-AAAAAAC........................................................2890.22202000
.....................................................................................................................................................................................................................................................TGACACTTTTCCATTGTCTGCAAAT-AAG.....................................................................................28140.21303000
....................................................................................................................................................................................................................................................................GTCTGCAAAT-AAGTGTCTTTCACT..........................................................................24140.21303000
.......................................................................................................................................................................................................................................................................TGCAAAT-AAGTGTCTTTCACTCACACAA...................................................................28100.20202000
............................................................................................................................................................................................................................................................TTTCCATTGTCTGCAAAT-AAGTGTCTTT..............................................................................28150.20303000
..................................................................................................................................................................................................................................................TGTTGACACTTTTCCATTGTCTGCAAA..........................................................................................27150.20303000
.............................................................................................................................................................................................................................................................................T-AAGTGTCTTTCACTCACACAATAA-AAAA...........................................................29120.17202000
.......................................................................................................................................................................................................................................................................TGCAAAT-AAGTGTCTTTCACTCACA......................................................................25130.15202000
..................................................................................................................................................................................................................................................TGTTGACACTTTTCCATTGTCTGCA............................................................................................25150.13202000
...........................................................................................................................................................................................................................................................TTTTCCATTGTCTGCAAAT-AAGTGTC.................................................................................26150.13202000
...........................................................................................................................................................................................................................................................TTTTCCATTGTCTGCAAAT-AAGTGT..................................................................................25150.13200020
.......................................................................................................................................................................................................................................................................................TTCACTCACACAATAA-AAAAAACTCAGAA..................................................2980.13101000
........................................................................................................................................................................................................................................................................................TCACTCACACAATAA-AAAAAACTCAG....................................................2680.13101000
.....................................................................................................................................................................................................................................................................................CTTTCACTCACACAATAA-AAAAAACTCA.....................................................2880.13101000
......................................................................................................................................................................................................................................................................................TTTCACTCACACAATAA-AAAAAACTCA.....................................................2780.13101000
..........................................................................................................................................................................................................................................................................................ACTCACACAATAA-AAAAAACTCAGACA.................................................2780.13101000
.........................................................................................................................................................................................................................................................................................CACTCACACAATAA-AAAAAACTCAGAC..................................................2780.13101000
.......................................................................................................................................................................................................................................................................................TTCACTCACACAATAA-AAAAAACTCA.....................................................2680.13101000
..........................................................................................................................................................................................................................................................................................ACTCACACAATAA-AAAAAACTCAGAC..................................................2680.13101000
........................................................................................................................................................................................................................................................................................TCACTCACACAATAA-AAAAAACTCA.....................................................2580.13101000
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGTCT................................................................................25160.13201010
..............................................................................................................................................................................................................................................................TCCATTGTCTGCAAAT-AAGTGTCT................................................................................24160.13201010
....................................................................................................................................................................................................................................................................................TCTTTCACTCACACAATAA-AAAAAAC........................................................2690.11101000
....................................................................................................................................................................................................................................................................................TCTTTCACTCACACAATAA-AAAAAACTC......................................................2890.11101000
............................................................................................................................................................................................................................................................................................TCACACAATAA-AAAAAACTCAGAC..................................................2490.11101000
......................................................................................................................................................................................................................................................................................TTTCACTCACACAATAA-AAAAAACTC......................................................2690.11101000
............................................................................................................................................................................................................................................................................................TCACACAATAA-AAAAAACTCAG....................................................2290.11101000
...............................................................................................................................................................................................................................................................................................CACAATAA-AAAAAACTCAGACAGAAAC............................................2790.11101000
.............................................................................................................................................................................................................................................................................................CACACAATAA-AAAAAACTCAGAC..................................................2390.11101000
.............................................................................................................................................................................................................................................................................................CACACAATAA-AAAAAACTCAGACAG................................................2590.11101000
..............................................................................................................................................................................................................................................................................................ACACAATAA-AAAAAACTCAGACAGAAAC............................................2890.11101000
.......................................................................................................................................................................................................................................................................TGCAAAT-AAGTGTCTTTCACTCACACAAT..................................................................29100.10101000
..................................................................................................................................................................................................................................................................................................AATAA-AAAAAACTCAGACAGAAAC............................................24100.10100010
..................................................................................................................................................................................................................................................................................................AATAA-AAAAAACTCAGACAGAAACTGTT........................................28100.10101000
.......................................................................................................................................................................................................................................................................TGCAAAT-AAGTGTCTTTCACTCACACA....................................................................27100.10101000
..................................................................................................................................................................................................................................................................................................AATAA-AAAAAACTCAGACAGAAACTGT.........................................27100.10101000
..................................................................................................................................................................................................................................................................................................AATAA-AAAAAACTCAGACA.................................................19100.10101000
....................................................................................................................................................................................................................................................................................................TAA-AAAAAACTCAGACAGAAACTGTT........................................26110.09101000
....................................................................................................................................................................................................................................................................................................TAA-AAAAAACTCAGACAGAA..............................................20110.09100010
.................................................................................................................................................................................................................................................................................GTGTCTTTCACTCACACAATAA-AAA............................................................25120.08101000
..................................................................................................................................................................................................................................................................................TGTCTTTCACTCACACAATAA-AAA............................................................24120.08101000
.............................................................................................................................................................................................................................................................................T-AAGTGTCTTTCACTCACACAATAA-AAA............................................................28120.08101000
.............................................................................................................................................................................................................................................................................T-AAGTGTCTTTCACTCACACAATAA-A..............................................................26120.08100010
........................................................................................................................................................................................................................................................................GCAAAT-AAGTGTCTTTCACTCACACA....................................................................26120.08101000
......................................................................................................................................................................................................................................................................CTGCAAAT-AAGTGTCTTTCACTCACA......................................................................26120.08101000
.............................................................................................................................................................................................................................................................................T-AAGTGTCTTTCACTCACACAATA.................................................................24130.08101000
.....................................................................................................................................................................................................................................................................TCTGCAAAT-AAGTGTCTTTCACT..........................................................................23140.07101000
...................................................................................................................................................................................................................................................................TGTCTGCAAAT-AAGTGTCTTTCAC...........................................................................24140.07101000
......................................................................................................................................................................................................................................................GACACTTTTCCATTGTCTGCAAAT-AAG.....................................................................................27140.07101000
.....................................................................................................................................................................................................................................................TGACACTTTTCCATTGTCTGCAAAT-A.......................................................................................26140.07101000
.........................................................................................................................................................................................................................................................................CAAAT-AAGTGTCTTTCACTCACACAAT..................................................................27150.07101000
............................................................................................................................................................................................................................................................TTTCCATTGTCTGCAAAT-AAGTGTC.................................................................................25150.07100010
............................................................................................................................................................................................................................................................TTTCCATTGTCTGCAAAT-AAGTGTCT................................................................................26150.07100010
..........................................................................................................................................................................................................................................................CTTTTCCATTGTCTGCAAAT-AAGTGTCT................................................................................28150.07101000
........................................................................................................................................................................................................................................................CACTTTTCCATTGTCTGCAAAT-AAG.....................................................................................25150.07101000
.........................................................................................................................................................................................................................................................................CAAAT-AAGTGTCTTTCACTCACACA....................................................................25150.07100010
...............................................................................................................................................................................................................................................................CCATTGTCTGCAAAT-AAGTGTCTT...............................................................................24160.06101000
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGT..................................................................................23160.06100010
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGTCTTTA.............................................................................28160.06101000
..................................................................................................................................................................................................................................................TGTTGACACTTTTCCATTGTCT...............................................................................................22160.06100010
..............................................................................................................................................................................................................................................................TCCATTGTCTGCAAAT-AAGTGTCTTTA.............................................................................27160.06101000
.............................................................................................................................................................................................................................................................TTCCATTGTCTGCAAAT-AAGTGTCTTTG.............................................................................28160.06100010
droVir3
CTCCACCATCACCGAGGAGGAGGAGCAG------CAAA---------GCAAAGCAGCAGCTTCCGCAGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA-A-------------------------TACAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GATATT-------------------------------------------------------------------TCAATTGTTCTTTATAACTATTCTTGTCGATGGACTACCTTCATTG------AAATATGTACTGTATAGTG-------ACTCTCG-ACTTGCCACACC---------------------------------------AT----TAAAACAAACATAGCTCGCAAATAACTGTTGACACTTTTTCGTTGTCTGCAAAT-AAGTGTCTTTCACTGACACAATC-AAAAAGACTCAGACAGAAACTGATT---------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................TGACACTTTTTCGTTGTCTGCAAAT-AAG.....................................................................................2820.501000010
............................................................................................................................................................................................................................................................TTTTCGTTGTCTGCAAAT-AAGTGTCT................................................................................26200.357600010
............................................................................................................................................................................................................................................................TTTTCGTTGTCTGCAAAT-AAGTGTC.................................................................................25200.102200000
...........................................................................................................................................................................................................................................................TTTTTCGTTGTCTGCAAAT-AAGTGT..................................................................................25200.102100010
............................................................................................................................................................................................................................................................TTTTCGTTGTCTGCAAAT-AAGTG...................................................................................23200.051000010
............................................................................................................................................................................................................................................................TTTTCGTTGTCTGCAAAT-A.......................................................................................19200.051100000
.............................................................................................................................................................................................................................................................TTTCGTTGTCTGCAAAT-AAGTGTC.................................................................................24200.051100000
droGri2
TTCAACCATCACCGAGGAGGAGGAGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCAGACCTCGCAAATAACGGTTGACACTTTCGGCGTGTCTGATAAAAACCTCTCGTTGACGGACACATTGAGAAAAGGGACTGAAGAGACCCGATCAAATCTG-TTT--TTGC-T-CAACTCGCTCTTCGCTCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGC....222032.20644059017026001100
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCT...232017.90358035040000310
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGC....21202.004003910000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCT...22201.653303300000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTC......20201.252501950100000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGA....22201.002002000000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCG....................................................................................................2151.0050400001000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCG.....21200.651300001102000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTCA.24200.651301300000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGC....23200.551101000100000
................................................................................................................................................................................................................................................ACGGTTGACACTTTCGGCGTGTC................................................................................................2340.5020200000000
...........................................................................................................................................................................................................................................AAATAACGGTTGACACTTTCGG......................................................................................................2260.5030300000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCGTGTC................................................................................................2540.5020200000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGT....22200.4590900000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGG......................................................................................................1970.4330300000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCGTG..................................................................................................2350.4020200000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGC.....................................................................................................2050.4020200000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCGT...................................................................................................2250.4020200000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTCAA25200.3570700000000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTTTC........................................................................................................2560.3320200000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTC..24200.2550040100000
................................................................................................................................................................................................................................................ACGGTTGACACTTTCGGCGTGTCT...............................................................................................2440.2510100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCA...23200.2550500000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCGTGTCT...............................................................................................2640.2510100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTT.......19200.2040310000000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTTTCGGC.....................................................................................................2850.2010100000000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGCT....................................................................................................2150.2010100000000
.................................................................................................................................................................................................................................................CGGTTGACACTTTCGGCGTGTCTG..............................................................................................2450.2010100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGAAA..24200.2040400000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGAA...23200.2040310000000
..................................................................................................................................................................................................................................................GGTTGACACTTTCGGCGTGT.................................................................................................2050.2010100000000
...............................................................................................................................................................................................................................................AACGGTTGACACTTTCGGCGTG..................................................................................................2250.2010100000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGCT...24200.2040400000000
................................................................................................................................................................................................................................................ACGGTTGACACTTTCGGCG....................................................................................................1950.2010100000000
.........................................................................................................................................................................................................................................................................................GACGGACACATTGAGAAAAGC.........................................................2150.2010000000001
............................................................................................................................................................................................................................................AATAACGGTTGACACTTTCGGCG....................................................................................................2350.2010100000000
.......................................................................................................................................................................................................................................TCGCAAATAACGGTTGACACTTTCGG......................................................................................................2660.1710100000000
.......................................................................................................................................................................................................................................TCGCAAATAACGGTTGACACTTTCG.......................................................................................................2560.1710100000000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTTTCGG......................................................................................................2760.1710100000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTC..23200.1530000000300
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCAA..24200.1530300000000
.......................................................................................................................................................................................................................................TCGCAAATAACGGTTGACACTTTC........................................................................................................2470.1410100000000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTTT.........................................................................................................2470.1410100000000
....................................................................................................................................................................................................................................ACCTCGCAAATAACGGTTGACACTT..........................................................................................................2580.1310100000000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTT..........................................................................................................2380.1310100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCA.....21200.1020010100000
..............................................................................................................................................................................................................................................................................................................................................TGC-T-CAACTCGCTCTTCGCTCA.22200.1020200000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTA..23200.1020200000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTC......21200.1020200000000
.............................................................................................................................................................................................................................................................................................................................................TTGC-T-CAACTCGCTCTTCGCTC..22200.1020200000000
..........................................................................................................................................................................................................................................................................................................................CCGATCAAATCTG-TTT--TTGC-T-...................21160.0610100000000
...................................................................................................................................................................................................................................................................................................................................TCTG-TTT--TTGC-T-CAACTCGCTCTTCGC....27180.0610100000000
....................................................................................................................................................................................................................................................................................................................................CTG-TTT--TTGC-T-CAACTCGCTCTT.......23190.0510100000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGCTCAA27200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTCT.25200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTT......20200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCA...22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................G-TTT--TTGC-T-CAACTCGCTCTT.......21200.0510100000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCG.....22200.0510100000000
......................................................................................................................................................................................................................................................................................................................................G-TTT--TTGC-T-CAACTCGCTCTTC......22200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTA..24200.0510010000000
...............................................................................................................................................................................................................................................................................................................................................GC-T-CAACTCGCTCTTCGCTC..20200.0510100000000
.............................................................................................................................................................................................................................................................................................................................................TTGC-T-CAACTCGCTCTTCGCTCAA24200.0510100000000
......................................................................................................................................................................................................................................................................................................................................G-TTT--TTGC-T-CAACTCGCTCTTCGC....24200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTCT.24200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................TG-TTT--TTGC-T-CAACTCGCTCT........21200.0510100000000
.....................................................................................................................................................................................................................................................................................................................................TG-TTT--TTGC-T-CAACTCGCTCTTCG.....24200.0510100000000
..............................................................................................................................................................................................................................................................................................................................................TGC-T-CAACTCGCTCTTCGCTA..21200.0510100000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTCAA26200.0510010000000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCAA....22200.0510000100000
................................................................................................................................................................................................................................................................................................................................................C-T-CAACTCGCTCTTCGCTCA.20200.0510100000000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGCTC..25200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCG.....20200.0510000000100
droPer2
TATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATCAGACCTCGCAAATAACGGTTGACACTTTCGGCATGTCTGATAAAAACCTCTCATTGACGGACACAGTG--AAAAG-----------ACCCGATCAAATCTG-TTT--TTGC-T-CAACTCGCTCTTCGCTCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................AAATAACGGTTGACACTTTCGGC.....................................................................................................2361.509170010
.............................................................................................................................................................................................................................................................................AAACCTCTCATTGACGGACACA....................................................................22111.18130130000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGC....22200.75150132000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTCAA26200.55110110000
..............................................................................................................................................................................................................................................................................AACCTCTCATTGACGGACA......................................................................19120.253210000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCTCAA25200.204040000
.............................................................................................................................................................................................................................................................................AAACCTCTCATTGACGGACAC.....................................................................21110.182020000
..............................................................................................................................................................................................................................................................................AACCTCTCATTGACGGACACA....................................................................21120.172020000
..............................................................................................................................................................................................................................................TAACGGTTGACACTTTCGGC.....................................................................................................2060.171010000
........................................................................................................................................................................................................................................CGCAAATAACGGTTGACACTTTCGGC.....................................................................................................2660.171010000
............................................................................................................................................................................................................................................................................................................G-----------ACCCGATCAAATCTG-TTT--TTGC-T-C..................25200.153300000
......................................................................................................................................................................................................................................CTCGCAAATAACGGTTGACACTTTCGG......................................................................................................2780.131010000
...........................................................................................................................................................................................................................................AAATAACGGTTGACACTTTCGG......................................................................................................2290.111010000
...............................................................................................................................................................................................................................................................................................................................CAAATCTG-TTT--TTGC-T-CAACTCGCTC.........26200.102020000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGCT...22200.102020000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTC..24200.102002000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGC....23200.102020000
.............................................................................................................................................................................................................................................................................AAACCTCTCATTGACGGACACAA...................................................................23110.091010000
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGCTCA.26200.051010000
..............................................................................................................................................................................................................................................................................................................................TCAAATCTG-TTT--TTGC-T-CAACTCGC...........25200.051010000
..........................................................................................................................................................................................................................................................................................................................................T--TTGC-T-CAACTCGCTCTTCGC....21200.051010000
............................................................................................................................................................................................................................................................................................................................GATCAAATCTG-TTT--TTGC-T-CCC................22200.051000100
........................................................................................................................................................................................................................................................................................................................................TTT--TTGC-T-CAACTCGCTCTTCGCTC..25200.051010000
.....................................................................................................................................................................................................................................................................................................................................TG-TTT--TTGC-T-CAACTCGCTCTTCGCTCA.28200.051010000
.........................................................................................................................................................................................................................................................................................................................................TT--TTGC-T-CAACTCGCTCTTCGCTA..24200.051010000
.................................................................................................................................................................................................................................................................................................................................AATCTG-TTT--TTGC-T-CAACTCGCTC.........24200.051010000
................................................................................................................................................................................................................................................................................................................................AAATCTG-TTT--TTGC-T-CAACTCGCTCT........26200.051010000
................................................................................................................................................................................................................................................................................................................................AAATCTG-TTT--TTGC-T-CAACTCGCTC.........25200.051010000
droAna3
ATGGCT-------------------------------------------------------------------AT--------------------------------------------------------------------CTACAATTT-TTTTAAAGC-TTTA--------CTAAA--CAAGCTGAACCCGCATAGGTTAGAT-------A-CGTTTTAAACATAGCTTGCAACTAACTGTTAACCGATTCGAGCGGTCTCAAAAT-AAGTGTTTGTCACTGAGACTTTGAGCAAAAAGTCTGAGAGCAACCGATTGAGTT--GCTC--GTAAACAAATTTTGCTC-GCGCTCAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................CTAACTGTTAACCGATTCGAGCGGTCT...............................................................................................2711.001010000
..................................................................................................................................................................................................................................................................................................TTTGAGCAAAAAGTCTGAGAGCAACC...........................................26200.60120120000
..............................................................................................................................................................................................................................................TAACTGTTAACCGATTCGAGCGGTC................................................................................................25200.357700000
..............................................................................................................................................................................................................................................TAACTGTTAACCGATTCGAGCGGTCT...............................................................................................26200.255500000
....................................................................................................................................................................................................................................................................................................TGAGCAAAAAGTCTGAGAGCAACCGAT........................................27200.204040000
....................................................................................................................................................................................................................................................................................................TGAGCAAAAAGTCTGAGAGCAACC...........................................24200.204040000
.......................................................................................................................................................................................................................................................................TCAAAAT-AAGTGTTTGTCACTGAGACTTT..................................................................29200.204040000
............................................................................................................................................................................................................................................................................................................................GATTGAGTT--GCTC--GTAAACAAATTTTGC...........28140.142200000
..............................................................................................................................................................................................................................................TAACTGTTAACCGATTCGAGCGGTCTC..............................................................................................27200.102020000
.............................................................................................................................................................................................................................................................................T-AAGTGTTTGTCACTGAGACTTTGAGCA.............................................................28200.102200000
.....................................................................................................................................................................................................................................................................................TTGTCACTGAGACTTTGAGCAAAAA.........................................................25200.102020000
..............................................................................................................................................................................................................................................TAACTGTTAACCGATTCGAGC....................................................................................................21200.102020000
.................................................................................................................................................................................................................................................................................................CTTTGAGCAAAAAGTCTGAGAGC...............................................23200.102020000
...................................................................................................................................................................................................................................................................................................TTGAGCAAAAAGTCTGAGAGCAACCGAT........................................28200.102200000
...............................................................................................................................................................................................................................................................................................................................TGAGTT--GCTC--GTAAACAAATTTTGCT..........26150.071010000
........................................................................................................................................................................................................................................................................................................................AACCGATTGAGTT--GCTC--GTAAACA...................24150.071010000
............................................................................................................................................................................................................................................................................................................................GATTGAGTT--GCTC--GTAAACAAATTTTG............27150.071100000
..................................................................................................................................................................................................................................................................................................................................GTT--GCTC--GTAAACAAATTTTGCTC-........24160.061100000
..................................................................................................................................................................................................................................................................CGGTCTCAAAAT-AAGTGTTTGTCACT..........................................................................26200.051100000
...................................................................................................................................................................................................................................................................................................TTGAGCAAAAAGTCTGAGAGCAACC...........................................25200.051010000
................................................................................................................................................................................................................................................................................AGTGTTTGTCACTGAGACTTTGAGCA.............................................................26200.051100000
..............................................................................................................................................................................................................................................TAACTGTTAACCGATTCGAG.....................................................................................................20200.051010000
.......................................................................................................................................................................................................................................................................TCAAAAT-AAGTGTTTGTC.............................................................................18200.051010000
.............................................................................................................................................................................................................................................................................T-AAGTGTTTGTCACTGAGACTTTGA................................................................25200.051100000
.............................................................................................................................................................................................................................................................................T-AAGTGTTTGTCACTGAGACTTTGAG...............................................................26200.051010000
.........................................................................................................................................................................................................................................................................................................AAAAAGTCTGAGAGCAACCGATTGAGT...................................27200.051000010
...............................................................................................................................................................................................................................................AACTGTTAACCGATTCGAGCGGT.................................................................................................23200.051010000
...................................................................................................................................................................................................................................................................................................TTGAGCAAAAAGTCTGAGAGC...............................................21200.051000010
...............................................................................................................................................................................................................................................AACTGTTAACCGATTCGAGCGGTCTC..............................................................................................26200.051100000
........................................................................................................................................................................................................................................................................................................CAAAAAGTCTGAGAGCAACCGATTGAG....................................27200.051100000
..................................................................................................................................................................................................................................................................................................TTTGAGCAAAAAGTCTGAGAGCAACCGAT........................................29200.051010000
...................................................................................................................................................................................................................................................................................................TTGAGCAAAAAGTCTGAGAGCAACCGAC........................................28200.051010000
....................................................................................................................................................................................................................................................................................................TGAGCAAAAAGTCTGAGAGCAACCGATT.......................................28200.051100000
...............................................................................................................................................................................................................................................AACTGTTAACCGATTCGAGCGGC.................................................................................................23200.051010000
.........................................................................................................................................................................................................................................................................AAAAT-AAGTGTTTGTCACTGAGACTTT..................................................................27200.051001000
...............................................................................................................................................................................................................................................................................................GACTTTGAGCAAAAAGTCTGAGAGC...............................................25200.051010000
...........................................................................................................................................................................................................................................................................................................AAAGTCTGAGAGCAACCGATTGAG....................................24200.051100000
..........................................................................................................................................................................................................................................................................................................AAAAGTCTGAGAGCAACCGATTGAGTT--G...............................28200.051100000
............................................................................................................................................................TAAAGC-TTTA--------CTAAA--CAAGCTGAACC......................................................................................................................................................................26200.051010000
..........................................................................................................................................................................................................................................................................................................AAAAGTCTGAGAGCAACCGATTGAC....................................25200.051001000
...........................................................................................................................................................................................................................................................................................................AAAGTCTGAGAGCAACCGATTGAGTT--G...............................27200.051000010
..........................................................................................................................................................................................................................................................................................................AAAAGTCTGAGAGCAACCGATTGAGTT--................................27200.051100000
.......................................................................................................................................................................................................................................................................TCAAAAT-AAGTGTTTGTCACTGAGACTT...................................................................28200.051010000
........................................................................................................................................................................................................................................................................................TCACTGAGACTTTGAGCAAAAAGTC......................................................25200.051010000
....................................................................................................................................................................................................................................................................................TTTGTCACTGAGACTTTGAGCAAAAAG........................................................27200.051010000
.........................................................................................................................................................................................................................................................................AAAAT-AAGTGTTTGTCACTGAGACT....................................................................25200.051010000
...............................................................................................................................................................................................................................................................................................................TCTGAGAGCAACCGATTGAGT...................................21200.051010000
droBip1
TGTAT---------------------------------------------------------------------------------------------------------------------------------------AGTG-------TCT--CA-GTTTTTCGTACTAATAC-----------------------------------------GAAGGCACCAGAGCTTGCAAATAACTGTCGACCGTTTCTTGTTGTCTGAAAAT-AAGTGTCTCTTTCTGACTCTTTACGAAAAGACTCAGAGAGCAACCGTTTCATGG--GTTC--TTTAAT-GTGCTCGCTC-GCGCTCAGSizeHit CountTotal NormTotal
No Reads
droKik1
CAGGG------------ATCGCAAATAA------GAGT---------TTTAAGTAAA-ATAAATATATG---------------C--------------------------------------------ATAT-----TTAG-------CTTTTTTCATAAC-TTTT--------GCAAA--TTCTATGCATATGCATA-----------------TGGTAAAAGCAGAGCTTGCAAAAAACTGTCGACCGTTTCTAATTGTCTGCATAT-ATCTGTCTCTCTCTCACTCTTTACGAAAAGACTCAGAGAGCACCCGTTC-ATGA--GTTCTTGGAA-T-CAGCTCGCGC-GCGTTCAGSizeHit CountTotal NormTotal
No Reads
droFic1
CAATATTCTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATATATATCAGAGCTCGCAAATAACAGTCGACCGTTTCTCGTTGTCTGCTAAT-AACAGTCTTCTCCTGACTCTTTACGAAAAGTCTCAGAGAACGACCGATG----A--GTTC--GTGAAT-GGGTTCGGTT-ACGCTCAGSizeHit CountTotal NormTotal
No Reads
droEle1
TTCTATAATTGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAGCGAAGCTCGCAAATAAATGTTGACCGATTCGTGCGGTCTCCAAAT-AAGTGTTTTTCTCTCAGACTTTGAGCAAAGAATCAGAGAGCAACCGATTGAATA---TTT--GTAAACAAATTTTGCTC-GCACTCAGSizeHit CountTotal NormTotal
No Reads
droRho1
AATAATTTCCTTCAAA-------------------------------------------------------------------------------------------------------------------------------------------------TTTTCT--------CGAAAGTAAAGCTAGATTTTTA-------------------TATATAAACCAGAGCTCGCAAATAACTGTCGACCGTTTCTCATTGTCTGCAAAT-AAGTGTCTTCTCCTGACTCTTTACGAAAAGACTCGGAGAGCAACCGATTTATGG--GTTC--TTGAAT-GAGCTCGCTC-GCGCTCAGSizeHit CountTotal NormTotal
No Reads
droBia1
TTGTTT-------------------------------------------------------------------TAAACTCTTTTTTAAAATGATTTTT----------------------------TCTCTGT-----ATAG-------TTGTTTTTA---------------AAT--------------------------GA---AGT----TCTTTTTAAATAAGAGCTTGCAAATAACTGTCGACCGTTTCTCGTTGTCTGCAAAT-AAGTGTCTTTTCCTGACTCTTTACCAAAAGACTTAGAGAGCAATCGATTTATGG--ATTC--TTGAAT-GAGGTCGCTT-GCGCTCAGSizeHit CountTotal NormTotal
No Reads
droTak1
GAACAAGA----------------------ATTGAATTCCCTACAGCCCAGT-----------------ATAAATATTTAGGTGAAACTA-AAT-CTCTTTGTTTG--TCTATTTAAAGATCAGTTTTTATTT-----TGAT-------TTGTT-------------------------------------------------AAAAGTTAAAAG-GATATAAATCATAGCTCGCAAATAACTGTTGACCGATTCGTGCGGTCCCCAAAT-AACTGTTTTTCTCTGAGACTTTGAGCAAACAATCAGAGAGCAACCGATGGAATT--GTTC--GTACAGAAATTTTGCTC-GCACTCAGSizeHit CountTotal NormTotal
No Reads
droEug1
CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACCTCGCCAAAAACTGTTAACCTATTCATGCGGTCTAAAAAT-AAGTGTTTTGCACTCAGACTTAGAGCAAAAAGTCTG---------------------CTT--GTATACAAATTTTGCTC-GCGCTCAGSizeHit CountTotal NormTotal
No Reads
dm3
CTCCACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
No Reads
droSim2
CTCAACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAACAGGTACGACCATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TTC--TTGGCCA--TGTAGTTCCTAATTA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CTCAACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCGGAACAGGTACGACCATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CG-TTC--TTGGCCA--TGTAGTTCCTAATTA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CTTACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACCAGAGCTCGCAAATAACAGTTGACTGTTTCTTGCAGTCACCAAAT-AACTGTTTTTGGCGCACCACTTGCGCAGAAAATCAGACAAGAACCGTTCACCAGTGTCTC--TTGAACG--AATGGTCT-GCGCTC--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGTCAC..............................................................................................27191.0091019000000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGT.................................................................................................24172.007203010310010000
...........................................................................................................................................................................................................................TAATACCAGAGCTCGCAAATAACAGT..................................................................................................................26146.00460251130040003
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTC..............................26928.1125326518010140000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACTTGC................................................................25122.0022061420000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGTCACC.............................................................................................28115.0015021300000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGTCA...............................................................................................26114.0014021000000011
...........................................................................................................................................................................................................................TAATACCAGAGCTCGCAAATAACAGTT.................................................................................................................27111.001104500020000
.....................................................................................................................................................................................................................................................................................................................................TGTCTC--TTGAACG--AATGGTCT-GCGCT...26110.0010001000000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGTC................................................................................................25110.001008200000000
................................................................................................................................................................................................................................................................TGCAGTCACCAAAT-AACTGTTTTTGG............................................................................2619.00901800000000
..........................................................................................................................................................................................................................TTAATACCAGAGCTCGCAAATAACAGT..................................................................................................................2719.00900000000009
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACCGTT........................................2718.00803500000000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGTTCACC....................................2518.00800800000000
...........................................................................................................................................................................................................................TAATACCAGAGCTCGCAAATAACAG...................................................................................................................2517.00705200000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCGCAAA.........................................................................................................................2717.00704300000000
.....................................................................................................................................................................................................................................................................TCACCAAAT-AACTGTTTTTGGCGCACC......................................................................2717.00701600000000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACTTG.................................................................2416.00606000000000
.........................................................................................................................................................................................................................................................TGTTTCTTGCAGTCACCAAAT-AACTGTT.................................................................................2816.00602400000000
........................................................................................................................................................................................................................................................................................................CAGAAAATCAGACAAGAACCGTTCACC....................................2716.00601500000000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACTTGCGC..............................................................2716.00600600000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACCGT.........................................2615.00500310010000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACTTGCGCA.............................................................2815.00505000000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACC...........................................2415.00500500000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGC.................................................................................................2415.00500500000000
................................................................................................................................................................................................................................................................TGCAGTCACCAAAT-AACTGTTTTTGGCG..........................................................................2815.00504010000000
.............................................................................................................................................................................................................................................................................................................................TTCACCAGTGTCTC--TTGAACG--AATGG............2674.5732052600010000
..TACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CATT...........................................................................................................................................2614.00402200000000
...............................................................................................................................................................................................................................................AACAGTTGACTGTTTCTTGCAGT.................................................................................................2314.00403100000000
.........................................................................................................................................................................................................................................................................................................AGAAAATCAGACAAGAACCGTTCACC....................................2614.00400400000000
.....................................................................................................................................................................................................................................................................................................................................TGTCTC--TTGAACG--AATGGTCT-GCGCC...2614.00400400000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCGCA...........................................................................................................................2513.00303000000000
............................................................................................................................................................................................................................................AATAACAGTTGACTGTTTCTTGCAGT.................................................................................................2613.00302010000000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACTTGCG...............................................................2613.00302100000000
.............................................................................................................................................................................................................................................................................T-AACTGTTTTTGGCGCACCACT...................................................................2213.00302100000000
...................................................................................................................................................................................................................................................................................................TTGCGCAGAAAATCAGACAAGAACC...........................................2513.00300300000000
.......................................................................................................................................................................................................................................................................................................................................TCTC--TTGAACG--AATGGTCT-GCGCC...2413.00300300000000
.............................................................................................................................................................................................................................................................................................CACCACTTGCGCAGAAAATCAGACAAG...............................................2713.00300300000000
.....................................................................................................................................................TTC-TCT----------AATC----------------------------------------------CATTAATACCAGAGCT...............................................................................................................................2613.00301200000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTCT.............................2792.2220013700000000
...............................................................................................................................................................................................................................................................................................................................CACCAGTGTCTC--TTGAACG--AATGGTC..........2672.141506810000000
..................................................................................................................................................................................................................................................................CAGTCACCAAAT-AACTGTTTTTGGCG..........................................................................2612.00201010000000
..TACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CAT............................................................................................................................................2512.00201100000000
...............................................................................................................................................................................................................................................AACAGTTGACTGTTTCTTGCAGTC................................................................................................2412.00202000000000
.....................................................................................................................................................................................................................................................................................................GCGCAGAAAATCAGACAAGAACCGTT........................................2612.00202000000000
........................................................................................................................................................................TC----------------------------------------------CATTAATACCAGAGCTCGCAAA.........................................................................................................................2412.00201000000001
..............................................................................................................................................................................................................................TACCAGAGCTCGCAAATAACAGTTGAC..............................................................................................................2712.00201000010000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGTTCACCAG..................................2712.00202000000000
.......................................................................................................................................................................................................................................................................................................................................TCTC--TTGAACG--AATGGTCT-GCGCTC--2512.00200110000000
........................................................................................................................................................................TC----------------------------------------------CATTAATACCAGAGCTCGCAAATAAC.....................................................................................................................2812.00201100000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCGC............................................................................................................................2412.00201100000000
.........................................................................................................................................................................................................................................................................CAAAT-AACTGTTTTTGGCGCACCACT...................................................................2612.00200200000000
..TACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CA.............................................................................................................................................2412.00202000000000
.........................................................................................................................................................................................................................................................TGTTTCTTGCAGTCACCAAAT-AACTGT..................................................................................2712.00202000000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCGCAA..........................................................................................................................2612.00202000000000
.......................................................................................................................................................................................................................................................................................................................................TCTC--TTGAACG--AATGGTCT-GCGCT...2412.00200200000000
................................................................................................................................................................................................................................................................................................CACTTGCGCAGAAAATCAGACAAGAAC............................................2712.00200200000000
.........................................................................................................................................................................................................................................................TGTTTCTTGCAGTCACCAAAT-AACTG...................................................................................2612.00202000000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGT...............................2591.891708610000002
..............................................................................................................................................................................................................................................................................................................................TCACCAGTGTCTC--TTGAACG--AATGG............2571.7112021000000000
.............................................................................................................................................................................................................................................................................................................................TTCACCAGTGTCTC--TTGAACG--AATGGTC..........2871.431003700000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTCTC--..........................2881.381109200000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTG................................2491.221108210000000
...................................................................................................................................................................................................................................................................................................TTGCGCAGAAAATCAGACAAGAAC............................................2411.00100100000000
.............................................................................................................................................................................................................................................ATAACAGTTGACTGTTTCTTGCAGTCACC.............................................................................................2911.00100100000000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGTTCACCAGC.................................2811.00100100000000
..........................................................................................................................................................................................................................................................................AAAT-AACTGTTTTTGGCGCACCACT...................................................................2511.00100100000000
..............................................................................................................................................................................................................................................................................................ACCACTTGCGCAGAAAATCAGACAAG...............................................2611.00101000000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAGTT................................................................................................2511.00100100000000
..............................................................................................................................................................................................................................................................CTTGCAGTCACCAAAT-AACTGTTTTTGG............................................................................2811.00100100000000
...............................................................................................................................................GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACCA....................................................................................................................................2711.00100100000000
...................................................................................................................................................................................................................................................GTTGACTGTTTCTTGCAGT.................................................................................................1911.00101000000000
.............................................................................................................................................................................................................................................ATAACAGTTGACTGTTTCTTGCAGTCAC..............................................................................................2811.00100100000000
..........................................................................................................................................................................................................................................................................AAAT-AACTGTTTTTGGCGCACCACTTG.................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................................AACTGTTTTTGGCGCACCACTTGCGCA.............................................................2711.00101000000000
......................................................................................................................................................................AATC----------------------------------------------CATTAATACCAGAGCTCGCAACA........................................................................................................................2711.00101000000000
..................................................................................................................................................................................................................................................................................TGTTTTTGGCGCACCACTTGCGCAGAA..........................................................2711.00101000000000
.........................................................................................................................................................................................................................................................................................................................................TC--TTGAACG--AATGGTCT-GCGC....2111.00100100000000
........................................................................................................................................................................................................................................................................CCAAAT-AACTGTTTTTGGCGCACCAC....................................................................2611.00100100000000
...............................................................................................................................................................................................................................................................................................................................CACCAGTGTCTC--TTGAACG--AATGG............2471.00704300000000
.....................................................................................................................................................................................................................................................................TCACCAAAT-AACTGTTTTTGGCGCAC.......................................................................2611.00101000000000
..........................................................................................................................................................................................................................................................................................................................................C--TTGAACG--AATGGTCT-GCGCTC--2211.00100100000000
..TACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CT.............................................................................................................................................2411.00100100000000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGTTCACCA...................................2611.00101000000000
..............................................................................................................................................................................................................................TACCAGAGCTCGCAAATAACA....................................................................................................................2111.00100010000000
.TTACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CATT...........................................................................................................................................2711.00100100000000
.........................................................................................................................................................................................................................................................................................GGCGCACCACTTGCGCAGAAAATCAGAC..................................................2811.00100100000000
..............................................................................................................................................................................................................................TACCAGAGCTCGCAAATAACAGTTGACT.............................................................................................................2811.00100100000000
........................................................................................................................................................................................................................................................................CCAAAT-AACTGTTTTTGGCGCACCACT...................................................................2711.00101000000000
...............................................................................................................................................GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACCAG...................................................................................................................................2811.00100100000000
...................................................................................................................................................................................................................................................................................................TTGCGCAGAAAATCAGACAAGAACCG..........................................2611.00101000000000
...........................................................................................................................................................................................................................TAATACCAGAGCTCGCAAATAACAGC..................................................................................................................2611.00100100000000
.....................................................................................................................................................................................................................................................................................................................................TGTCTC--TTGAACG--AATGGTCT-GCGCTC--2711.00100100000000
................................................................................................................................................................................................................................................................TGCAGTCACCAAAT-AACTGTTTTTGGCGC.........................................................................2911.00100100000000
..................................................................................................................................................GAATTC-TCT----------AATC----------------------------------------------CATTAATACCAGAGCT...............................................................................................................................2911.00100100000000
.........................................................................................................................................................................................................................................................TGTTTCTTGCAGTCACCAAAT-AAC.....................................................................................2411.00101000000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACCC..........................................2511.00100100000000
...........................................................................................................................................................................................................................TAATACCAGAGCTCGCAAATAACAGTTG................................................................................................................2811.00101000000000
......................................................................................................................................................................................................................................................................CACCAAAT-AACTGTTTTTGGCGCACCACT...................................................................2911.00100100000000
...............................................................................................................................................GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACC.....................................................................................................................................2611.00100100000000
...................................................................................................................................................................................................................................................................................................TTGCGCAGAAAATCAGACAAGAACCGTT........................................2811.00101000000000
............................................................................................................................................................................................................................................AATAACAGTTGACTGTTTCTTGCAGTC................................................................................................2711.00100100000000
...............................................................................................................................................................................................................................................................................AACTGTTTTTGGCGCACCACT...................................................................2111.00100100000000
..TACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CAC............................................................................................................................................2511.00100100000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAAC............................................2311.00100100000000
............................................................................................................................................................................................................................................AATAACAGTTGACTGTTTCTTGCAGC.................................................................................................2611.00100100000000
.......................................................................................................................................................................................................................................................................................................................................TCTC--TTGAACG--AATGGTCT-GCG.....2211.00101000000000
...........................................................................................................................................................................................................................................................................AAT-AACTGTTTTTGGCGCACCACC...................................................................2411.00100100000000
..............................................................................................................................................................................................................................TACCAGAGCTCGCAAATAACAGG..................................................................................................................2311.00100010000000
.......................................................................................................................................................................................................................................................................ACCAAAT-AACTGTTTTTGGCGCACC......................................................................2511.00100100000000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGTTCACCAGT.................................2811.00100100000000
.............................................................................................................................................................................................................................ATACCAGAGCTCGCAAATAAC.....................................................................................................................2111.00101000000000
......................................................................................................................................................TC-TCT----------AATC----------------------------------------------CATTAATACCAGAGCTCG.............................................................................................................................2711.00101000000000
................................................................................................................................................................................................................................................................................ACTGTTTTTGGCGCACCACTTGCG...............................................................2411.00101000000000
......................................................................................................................................................................AATC----------------------------------------------CATTAATACCAGAGCTCGCAAA.........................................................................................................................2611.00101000000000
..........................................................................................................................................................................................................................................................................AAAT-AACTGTTTTTGGCGCACCACC...................................................................2511.00100100000000
......................................................................................................................................................................AATC----------------------------------------------CATTAATACCAGAGCTCGCA...........................................................................................................................2411.00100100000000
.........................................................................................................................................................................................................................................................................CAAAT-AACTGTTTTTGGCGCACCACC...................................................................2611.00100100000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACCGTTC.......................................2811.00101000000000
.....................................................................................................................................................................................................................................................................................................GCGCAGAAAATCAGACAAGAACCGT.........................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACT...........................................2411.00100100000000
.....................................................................................................................................................................................................................................................................................................GCGCAGAAAATCAGACAAGAACCG..........................................2411.00101000000000
.........................................................................................................................................................................................................................................................TGTTTCTTGCAGTCACCAAAT-AACT....................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................TGACTGTTTCTTGCAGTCACCA............................................................................................2211.00100100000000
...........................................................................................................................................................................................................................................................................AAT-AACTGTTTTTGGCGCACCACTTG.................................................................2611.00101000000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCGCAC..........................................................................................................................2611.00101000000000
........................................................................................................................................................................TC----------------------------------------------CATTAATACCAGAGCTCGCAAATA.......................................................................................................................2611.00100010000000
......................................................................................................................................................................................................................................................................................TTTGGCGCACCACTTGCGCAGAAAAT.......................................................2611.00100000000001
................................................................................................................................................................................................................................................................................ACTGTTTTTGGCGCACCACTTG.................................................................2211.00101000000000
......................................................................................................................................................................AATC----------------------------------------------CATTAATACCAGAGCTC..............................................................................................................................2111.00101000000000
...........................................................................................................................................................T----------AATC----------------------------------------------CATTAATACCAGAGCTCG.............................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................................................................................................................GAAAATCAGACAAGAACCGT.........................................2011.00101000000000
...............................................................................................................................................................................................................................................................................AACTGTTTTTGGCGCACCACTTGCGCAGA...........................................................2911.00100100000000
........................................................................................................................................................................TC----------------------------------------------CATTAATACCAGAGCTCGCAAATAA......................................................................................................................2711.00101000000000
.........................................................................................................................................................................................................................................................................................................AGAAAATCAGACAAGAACCGTTCACCAG..................................2811.00101000000000
..........................................................................................................................................................................................................................................................................................................................................C--TTGAACG--AATGGTCT-GCGCTT--2211.00100100000000
.............................................................................................................................................................................................................................................................................................CACCACTTGCGCAGAAAATCAGACA.................................................2511.00101000000000
......................................................................................................................................................................................................................................................................................................CGCAGAAAATCAGACAAGAACCGTTC.......................................2611.00100100000000
....................................................................................................................................................................................................................................................................................................TGCGCAGAAAATCAGACAAGAACCGC.........................................2611.00100100000000
..............................................................................................................................................................................................................................................TAACAGTTGACTGTTTCTTGCAG..................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................................................................TGTTTTTGGCGCACCACTTGCGCAGA...........................................................2611.00101000000000
.........................................................................TA--------------------------------------------------------------------GAAGAATTC-TCT----------AATC----------------------------------------------CATTAATACCA....................................................................................................................................2911.00101000000000
..................................................................................................................................................................................................................................................................................TGTTTTTGGCGCACCACTTGCGCAG............................................................2511.00100100000000
..............................................................................................................................................................................................................................................................................................................ATCAGACAAGAACCGTTCACCAGTGTC..............................2760.83500500000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTCTC--T.........................2980.75602400000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGT.................................2390.67606000000000
..................................................................................................................................................................................................................................................................................................................GACAAGAACCGTTCACCAGTGTCTC--T.........................2690.56501400000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGTGTCT.............................2690.56500000000005
............................................................................................................................................................................................................................................................TTCTTGCAGTCACCAAAT-AACTGTT.................................................................................2560.50301200000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGTGTC..............................2590.44403100000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTCC.............................2790.44400400000000
..........................................................................................................................................................................................................................................................GTTTCTTGCAGTCACCAAAT-AACTGTT.................................................................................2750.40201100000000
.......................................................................................................................................................................................................................................................................................................................GAACCGTTCACCAGTGTCTC--TTGAAC....................26110.36400400000000
..................................................................................................................................................................................................................................................................................................................GACAAGAACCGTTCACCAGTGTCTC--C.........................2690.33300300000000
................................................................................................................................................................................................................................................................................................................................ACCAGTGTCTC--TTGAACG--AATGGTC..........2570.29200200000000
...............................................................................................................................................................................................................................................................................................................................CACCAGTGTCTC--TTGAACG--AATGGTCC-........2770.29200200000000
.............................................................................................................................................................................................................................................................................................................................TTCACCAGTGTCTC--TTGAACG--AATGGT...........2770.29202000000000
..............................................................................................................................................................................................................................................................................................................................TCACCAGTGTCTC--TTGAACG--AATGGTC..........2770.29201100000000
...............................................................................................................................................................................................................................................................................................................................CACCAGTGTCTC--TTGAACG--AATGGT...........2570.29200101000000
......................................................................................................................................................................................................................................................................................................................AGAACCGTTCACCAGTGTCTC--TTGAAC....................27110.27300300000000
CTTACG-------------------------------------------------------------------TA--------------------------------------------------------------------GAAGAATTC-TCA----------TT...............................................................................................................................................................................................2240.25101000000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGTGTCTC--..........................2780.25202000000000
.................................................................................................................................................................................................................................................................................................................AGACAAGAACCGTTCACCAGTGTC..............................2490.22201100000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGT.................................2290.22202000000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGTG................................2390.22202000000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGC.................................2290.22200200000000
..........................................................................................................................................................................................................................................................GTTTCTTGCAGTCACCAAAT-AACTG...................................................................................2550.20101000000000
.............................................................................................................................................................................................................................................................................................................AATCAGACAAGAACCGTTCACCAGTGTC..............................2860.17100100000000
............................................................................................................................................................................................................................................................................................................AAATCAGACAAGAACCGTTCACCAGTGTC..............................2960.17100100000000
............................................................................................................................................................................................................................................................................................................AAATCAGACAAGAACCGTTCACCAGTG................................2760.17101000000000
............................................................................................................................................................................................................................................................................................................AAATCAGACAAGAACCGTTCACCAGC.................................2660.17100100000000
.............................................................................................................................................................................................................................................................................................................AATCAGACAAGAACCGTTCACCAGTG................................2660.17101000000000
..............................................................................................................................................................................................................................................................................................................ATCAGACAAGAACCGTTCACCAGTGTCT.............................2860.17100100000000
.............................................................................................................................................................................................................................................................................................................................TTCACCAGTGTCTC--TTGAACG--AATGGTCT-........2970.14100100000000
.....................................................................................................................................................................................................................................................................................................................................TGTCTC--TTGAACG--AATGGTCT-G.......2270.14101000000000
.................................................................................................................................................................................................................................................................................................................................CCAGTGTCTC--TTGAACG--AATGGTC..........2470.14100100000000
...............................................................................................................................................................................................................................................................................................................................CACCAGTGTCTC--TTGAACG--AATGGTCT-........2770.14100100000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGTCTC--C.........................2980.13100100000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCAGTGTCTC--T.........................2880.13100100000000
................................................................................................................................................................................................................................................................................................................CAGACAAGAACCGTTCACCA...................................2090.11101000000000
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGTGC...............................2590.11100000000001
...............................................................................................................................................................................................................................................................................................................TCAGACAAGAACCGTTCACCAGC.................................2390.11100100000000
droEre2
CTCCACCATCACCGAGGAGGAGGAGCAG------CAGT---------CCCGAACAGGTACGAACATGGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-T-C--CTGGCCA--TGTAGTTTTTAATTA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 11:44 PM