ID:

dwi_68

 Coordinate:

scf2_1100000004902:7292233-7292295 +

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-28.7 -28.1 -27.9

Flybase annnotation

Antisense to intron [Dwil\GK11063-in]

No Repeatable elements found

Sense Strand Reads

AAGGGCTCTGTCGAGAGATGAGGCCAATGGCAAAAACTTGGTACATCATCTGATATGTATGTTCGTATATATATAACTGGTAAATATATATGCGCTCAGGTACATATTGAGATGAAAAGCAAGTTTTCTTCTGACTGTGGCAAAAGGCGTAAAAACTAAAAAC

***********************************(((((.....(((((((((((((((...(((((((((((.........))))))))))).....))))))))).))))))....)))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 V118

embryo

 V119

head

 M045

female body

 M020

head
........................................................................................TATGCGCTCAGGTACATATTGAGA................................................... 24 0 1 275.00 275 155 107 8 5 0
........................................................................................TATGCGCTCAGGTACATATTGAG.................................................... 23 0 1 248.00 248 88 74 80 2 4
........................................................................................TATGCGCTCAGGTACATATTGA..................................................... 22 0 1 16.00 16 9 2 2 3 0
........................................................................................TATGCGCTCAGGTACATATTG...................................................... 21 0 1 11.00 11 9 0 0 2 0
..................................................TGATATGTATGTTCGTATATA............................................................................................ 21 0 1 10.00 10 3 7 0 0 0
..................................................TGATATGTATGTTCGTATAT............................................................................................. 20 0 1 6.00 6 4 2 0 0 0
........................................................................................TATGCGCTCAGGTACATATTGAGAA.................................................. 25 1 1 3.00 3 1 2 0 0 0
.........................................................................................................................AGTTCGCTTCTGACTATGGCA..................... 21 3 7 2.29 16 0 0 0 16 0
........................................................................................TATGCGCTCAGGTACATATT....................................................... 20 0 1 2.00 2 1 0 1 0 0
........................................................................................TATGCTCTCAGGTACATATTGAG.................................................... 23 1 1 2.00 2 0 0 2 0 0
........................................................................................TATGCGCTCACGTACATATTGAGA................................................... 24 1 1 2.00 2 1 1 0 0 0
..AGGCTGTGTCGAGAGATG............................................................................................................................................... 18 2 2 2.00 4 0 0 0 4 0
........................................................................................TATGCGCTCAGGTACGTATTGAGA................................................... 24 1 1 2.00 2 1 1 0 0 0
........................................................................................TATGCACTCAGGTACATATTGAGA................................................... 24 1 1 2.00 2 1 1 0 0 0
.........................................................................................................................AGTTCGCTTCTGACTATGGC...................... 20 3 11 1.45 16 0 0 0 14 2
........................................................................................TATACGCTCAGGTACATATTGAGA................................................... 24 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCTCTCAGGTACATATTGAGA................................................... 24 1 1 1.00 1 0 1 0 0 0
........................................................................................TATGCGCTCAGGTACATATTGAC.................................................... 23 1 1 1.00 1 1 0 0 0 0
.........................................................................................ATGCGCTCAGGTACATATTG...................................................... 20 0 1 1.00 1 0 0 0 1 0
.......................................................................................ATATGCGCTCAGGTACATATTGAGAA.................................................. 26 1 1 1.00 1 0 1 0 0 0
........................................................................................TATGCGCTCAGGTATATATTGAG.................................................... 23 1 1 1.00 1 0 1 0 0 0
........................................................................................TATGCGCTCAGGTCCATATTGAGA................................................... 24 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCGCTCAGGTACATATA....................................................... 20 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCACTCAGGTACATATTGAG.................................................... 23 1 1 1.00 1 0 0 1 0 0
........................................................................................TATGCGCTCAGGTACATATTGAGAT.................................................. 25 0 1 1.00 1 1 0 0 0 0
........................................................................................TATGCGCTCAGCTACATATTGAGA................................................... 24 1 1 1.00 1 0 1 0 0 0
........................................................................................TACGCGCTCAGGTACATATTGAGA................................................... 24 1 1 1.00 1 0 1 0 0 0
........................................................................................TATGCGCTCAGGTACATGTTGAG.................................................... 23 1 1 1.00 1 0 0 1 0 0
........................................................................................TATGCGCTCAGGTACATATTGAGC................................................... 24 1 1 1.00 1 0 0 1 0 0
........................................................................................TACGCGCTCAGGTACATATTGAG.................................................... 23 1 1 1.00 1 0 0 1 0 0
.......................................................................................CTATGCGCTCAGGTACATATTGAGAA.................................................. 26 2 1 1.00 1 1 0 0 0 0
........................................................................................TATGAGCTCAGGTACATACTGAG.................................................... 23 2 1 1.00 1 0 1 0 0 0
........................................................................................................................AAGTTCGCTTCTGACTATGGCAA.................... 23 3 1 1.00 1 0 0 0 1 0
........................................................................................TATGCGCTCAGGCACATATTGA..................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCGCTCAGGTACACATTGAGA................................................... 24 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCGTTCAGGTACATATTGAGA................................................... 24 1 1 1.00 1 0 0 1 0 0
..GGGCTGTGTCCAGAGATG............................................................................................................................................... 18 2 7 1.00 7 0 0 0 7 0
........................................................................................TATGCGCTCAGGTAAATATTGAGA................................................... 24 1 1 1.00 1 0 1 0 0 0
..........................................................................................TACGCTCAGGTACATATTGAGA................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................TGATATGTATGTTCGTATATAAA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGAGCTCAGGTACATATTGAG.................................................... 23 1 1 1.00 1 0 0 1 0 0
........................................................................................TATGCGCTCAGGTACATATTGATA................................................... 24 1 1 1.00 1 0 1 0 0 0
.......................................................................................ATATGCGCTCAGGTACATATTGAG.................................................... 24 0 1 1.00 1 0 1 0 0 0
........................................................................................TATGCGCTCAGGTACATGTTG...................................................... 21 1 1 1.00 1 1 0 0 0 0
........................................................................................TATGCGCTCAGGTACATATTGAGT................................................... 24 1 1 1.00 1 1 0 0 0 0
.........................................................................................................................AGTTCGCTTCTGACTATGGCAA.................... 22 3 3 0.67 2 0 0 0 2 0
...GGCTGTGTCCAGAGATGAGC............................................................................................................................................ 20 3 6 0.67 4 0 0 0 4 0
...GGCTGTGTCGAGAGATGGGC............................................................................................................................................ 20 3 2 0.50 1 0 0 0 1 0
..AGGCTCTGTCCAGAGATG............................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0
...GGCTCTGTCCAGAGATGGGC............................................................................................................................................ 20 3 4 0.50 2 0 0 0 2 0
..........................................................................................................................GTTCGCTTCTGACTATGGCAA.................... 21 3 4 0.50 2 0 0 0 2 0
........................................................................................................................AAGTTCGCTTCTGACTATGGCA..................... 22 3 5 0.40 2 0 0 0 2 0
..AGGCTCTGTCCAGAGATGGG............................................................................................................................................. 20 3 4 0.25 1 0 0 0 1 0
..................................................TGATATGTATGTTTGTATATA............................................................................................ 21 1 5 0.20 1 0 1 0 0 0
........................................................................................................................AAGTTCGCTTCTGACTATGGC...................... 21 3 6 0.17 1 0 0 0 1 0
..........................................................................................................................GTTCGCTTCTGACTATGGCA..................... 20 3 14 0.14 2 0 0 0 2 0
..AGGCTGTGTCCAGAGATGAG............................................................................................................................................. 20 3 8 0.13 1 0 0 1 0 0
....GCTGTGTCCAGAGATGAGC............................................................................................................................................ 19 3 20 0.10 2 0 0 0 2 0
....GCTCTGTCCAGAGATGGGC............................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0
....GCTGTGTCGAGAGATGGGC............................................................................................................................................ 19 3 16 0.06 1 0 0 0 1 0
..................................................TGATATGTATGTTCGTAAAA............................................................................................. 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTCCCGAGACAGCTCTCTACTCCGGTTACCGTTTTTGAACCATGTAGTAGACTATACATACAAGCATATATATATTGACCATTTATATATACGCGAGTCCATGTATAACTCTACTTTTCGTTCAAAAGAAGACTGACACCGTTTTCCGCATTTTTGATTTTTG

************************************(((((.....(((((((((((((((...(((((((((((.........))))))))))).....))))))))).))))))....)))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V119

head
.................................................................................TTTATACATACGCGAGTACT.............................................................. 20 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004902:7292183-7292345 + dwi_68 confident AAGGGCTCTGTCGAGAGATGAGGCCAATGGCAAAAACTTGGTACATCATCTGATATGTATGTTCGTATATATATAACTGGTAAATATATATGCGCTCAGGTACATATTGAGATGAAAAGCAAGTTTTCTTCTGACTGTGGCAAAAGGCGTAAAAACTAAAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAGGGCTCTGTCGAGAGATGAGGCCAATGGCAAAAACTTGGTACATCATCTGATATGTATGTTCGTATATATATAACTGGTAAATATATATGCGCTCAGGTACATATTGAGATGAAAAGCAAGTTTTCTTCTGACTGTGGCAAAAGGCGTAAAAACTAAAAACSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................................TATGCGCTCAGGTACATATTGAGA...................................................241275.00275051551078
........................................................................................TATGCGCTCAGGTACATATTGAG....................................................231248.0024842887480
........................................................................................TATGCGCTCAGGTACATATTGA.....................................................22116.001603922
........................................................................................TATGCGCTCAGGTACATATTG......................................................21111.001102900
..................................................TGATATGTATGTTCGTATATA............................................................................................21110.001000370
..................................................TGATATGTATGTTCGTATAT.............................................................................................2016.00600420
........................................................................................TATGCGCTCAGGTACATATTGAGAA..................................................2513.00300120
........................................................................................TATGCGCTCAGGTACATATT.......................................................2012.00200101
........................................................................................TATGCGCTCAGGTACATATTGAC....................................................2311.00100100
.........................................................................................ATGCGCTCAGGTACATATTG......................................................2011.00101000
.......................................................................................ATATGCGCTCAGGTACATATTGAGAA..................................................2611.00100010
........................................................................................TATGCGCTCAGGTACATATA.......................................................2011.00100100
........................................................................................TATGCGCTCAGGTACATATTGAGAT..................................................2511.00100100
........................................................................................TATGCGCTCAGGTACATATTGAGC...................................................2411.00100001
.......................................................................................ATATGCGCTCAGGTACATATTGAG....................................................2411.00100010
........................................................................................TATGCGCTCAGGTACATATTGAGT...................................................2411.00100100

Generated: 10/20/2015 at 06:56 PM