ID:

dwi_668

 Coordinate:

scf2_1100000004511:8563666-8563816 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK16710-cds]; exon [dwil_GLEANR_17072:3]; intron [Dwil\GK16710-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATCGGAAACCAAATGGCCCTGGTGGTGGTTTGGAGCAGCAGCCACAGCAGGTAATCAACTAAAAACCAAAACCAGCCATCAAGCTACAACAACAACAACAATTTAACAACAACAACCACGATAGCAACAATAACCACTATCAGCATATAGAGAAGTGCAGCGCGGTAAAAGCAGCGGCAGTAACAACAACATCTACAACAACAAACATCAACATGGTGGCGGCAACACTAACAACAAATATAAACTAAAAA
**************************************************************************************************.....................(((((............)))))...............*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M045
female body
 V119
head
 M020
head
..........................................................................................................................................ATCAGCATATAGAGAAGT............................................................................................... 18 0 1 2.00 2 2 0 0 0 0
...................TGGTGGTGGTTTGGAGCAGCAGCC................................................................................................................................................................................................................ 24 0 1 2.00 2 1 0 0 1 0
..........................................................................................................................................................GTGCAGCGCGGTAAAAGCAGCGGCA........................................................................ 25 0 1 2.00 2 1 1 0 0 0
.................CCTGGTGGTGGTTTTGAGC....................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................GAGAAGTGCAGCGCGGTAAAAGCAGC............................................................................ 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................CCACTATCAGCATATAGAGAAGTGCA............................................................................................ 26 0 1 1.00 1 1 0 0 0 0
..................................................................................................CAATTTAACAACAACAACCACGAT................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0
...........................GTTTGGAGCAGCAGCCACA............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0
...........................................................................................................................................................TGCAGCGCGGTAAAAGCAGCGGCA........................................................................ 24 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................AAAAGCAGCGGCAGTAACAACAAC............................................................. 24 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................CAACATGGTGGCGGCAACACTAACAAC................ 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................TCTACAACAACAAACATCAACATGGTGG................................ 28 0 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................CAACATGGTGGCGGCAACAC....................... 20 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................ACCACTATCAGCATATAGAGAAG................................................................................................ 23 0 1 1.00 1 0 0 1 0 0
.......................................................................................................................................ACTATCAGCATATAGAGAAG................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
.............TGGCCCTGGTGGTGGTTTGGAGCAGCA................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................ATATAGAGAAGTGCAGCGCGGT..................................................................................... 22 0 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................AGCGCGGTAAAAGCAGCGGC......................................................................... 20 0 1 1.00 1 1 0 0 0 0
......................................................................................................TTAACAACAACAACCACGATA................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................CAGCATATAGAGAAGTGC............................................................................................. 18 0 1 1.00 1 1 0 0 0 0
.............................TTGGAGCAGCAGCCACAGCAGGT....................................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................AGTGCAGCGCGGTAAAAGCAGCGGC......................................................................... 25 0 1 1.00 1 1 0 0 0 0
..................CTGGTGGTGGTTTGGAGCAGCAGC................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0
......................................................................................................................................................................AAAAGCAGCGGCAGTAACAAC................................................................ 21 0 1 1.00 1 1 0 0 0 0
........................................................................................................................................................AAGTGCAGCGCGGTAAAAGCAGC............................................................................ 23 0 1 1.00 1 1 0 0 0 0
...........AATGGCCCTGGTGATGGTTTGGAG........................................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0
..CGGAAACCAAATGGCCCTGGTGGTGGT.............................................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 1 0 0
....................GGTGGTGGTTTGGAGCAGCAG.................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................ATCAGCATATAGAGAAGTG.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0
...........................GTTTGGAGCAGCAGCCACAGCAGG........................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................CATCAACATGGTGGCGGCAACACT...................... 24 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................ATCAGCATATAGAGAAGTGC............................................................................................. 20 0 1 1.00 1 1 0 0 0 0
............................................................................................................ACAACAACCACGATAGCAACAAT........................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................CAATTTAACAACAACAACCACGATAGCA............................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................ATCAGCATATAGAGAAGTGCA............................................................................................ 21 0 1 1.00 1 1 0 0 0 0
...................TGGTGGTGGTTTGGAGCAGCA................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................GCAGCGCGGTAAAAGCAGCGGCA........................................................................ 23 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................GGTAAAAGCAGCGGCAGTAACAACAAC............................................................. 27 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................CAATAACCACTATCAGCA.......................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
............................................................................................................................................................GCAGCGCGGTAAAAGCAGC............................................................................ 19 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................AAAAGCAGCGGCAGTAACAA................................................................. 20 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................................................................AAACATCAACATGGTGGCGGC............................ 21 0 1 1.00 1 1 0 0 0 0
.........................................................ACTAAAAACCAAAACCAGCCATC........................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................................................GGTAAAAGCAGCGGCAGT...................................................................... 18 0 1 1.00 1 1 0 0 0 0
..................CTGGTGGTGGTTTGGAGCAG..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................GTGCAGCGCGGTAAAAGCAGCGGC......................................................................... 24 0 1 1.00 1 1 0 0 0 0
.................................................................................................................AACCACGATAGCAACAAT........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................................ATAGAGAAGTGCAGCGCGG...................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.....................GTGGTGGTTTGGAGCAGCAGC................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
........................GTGGTTTGGAGCAGCAGCC................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.........................TGGTTTGGAGCAGCAGCC................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................AAAAGCAGCGGCAGTAACAACAACA............................................................ 25 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................GCGCGGTAAAAGCAGGTG.......................................................................... 18 2 3 0.67 2 0 0 2 0 0
.............................TTGGAGCAGCAGCCACAGCAG......................................................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...............................................................................CAAGCTACAACAACAACAACA....................................................................................................................................................... 21 0 3 0.33 1 1 0 0 0 0
.............................................................................................................................................................................................................CATCGACATGGTGGCGGGGA.......................... 20 3 6 0.33 2 0 1 1 0 0
............................................................ACAAACCAAAACCAGCCAT............................................................................................................................................................................ 19 1 4 0.25 1 1 0 0 0 0
.............................TTGGAGCATGAGCCACACCA.......................................................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 1 0
...............................................................................................................................................................GCGCGGTAAAAGCAGGTGG......................................................................... 19 3 16 0.06 1 0 0 1 0 0
............................................................................................................................................................TACGCGCGGTAAAAGCAG............................................................................. 18 3 20 0.05 1 0 0 1 0 0
........................................................................................................................................................................................AACAATATCTACAACAAC................................................. 18 1 20 0.05 1 0 0 0 0 1

Anti-sense strand reads

TAGCCTTTGGTTTACCGGGACCACCACCAAACCTCGTCGTCGGTGTCGTCCATTAGTTGATTTTTGGTTTTGGTCGGTAGTTCGATGTTGTTGTTGTTGTTAAATTGTTGTTGTTGGTGCTATCGTTGTTATTGGTGATAGTCGTATATCTCTTCACGTCGCGCCATTTTCGTCGCCGTCATTGTTGTTGTAGATGTTGTTGTTTGTAGTTGTACCACCGCCGTTGTGATTGTTGTTTATATTTGATTTTT
***********************************************************************************************.....................(((((............)))))...............************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
..........................................................CATGTTTGGTTTTGGTCGGTAA........................................................................................................................................................................... 22 3 2 1.00 2 2 0 0 0
..................................................................................................................................................................................................................................TGATTGTTGTTTATATTTGATT... 22 0 2 0.50 1 1 0 0 0
...................................................................................................................................................................CCATTTTGGTCGCCCTCA...................................................................... 18 2 3 0.33 1 0 1 0 0
..........................................................CATGTTTGGTTTTGGTCGGT............................................................................................................................................................................. 20 2 4 0.25 1 1 0 0 0
..............................................................................................................................................................TCGCGCCAGTTTAGTCGC........................................................................... 18 2 5 0.20 1 0 0 1 0
..............................................................TTTGGTCTTAGTCGGTAGT.......................................................................................................................................................................... 19 2 7 0.14 1 0 1 0 0
.........................................................CCATGTTTGGTTTTGGTCGGT............................................................................................................................................................................. 21 3 9 0.11 1 1 0 0 0
..................................................................................................................GGGCGCTATCGTGGTTATT...................................................................................................................... 19 3 19 0.11 2 0 0 0 2
..........................CCAAACGTCGTCGTCCGTGTA............................................................................................................................................................................................................ 21 3 11 0.09 1 0 1 0 0
................................................................TGGTCTTAGTCGGTAGTGC........................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0
.............................................................................................TTGTTGTTAGAATGTTGTTCT......................................................................................................................................... 21 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:8563616-8563866 - dwi_668 ATCGGAAACCAAATGGCCCTGGT---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATCAACTAAA-------------------AACCAAAACCAGCCATCAAGCTACA---ACAAC-AACA---ACAATTTAACAACAAC--A--------------------ACCACGATAGC-----A------------ACAA-TA-ACC---------------------------------------------------ACTATCAGCATATAGAGAAGTGCAGCGCGGTAAAAGCAGCGGCA--------------------GTA------ACA---ACAACATCTACAACAACAAACATCAA---C-A------TGGTGGCGGCAACACT----------AACAACAAATATAAACTAAAA---------------A
droVir3 scaffold_12970:9524338-9524574 - TTTGGGAAACGAATG-CCCAGGA---GATGGGTGCACTTCTTGAGCAACAGCTACAGCAAAACAACAAT----------------AATAAT--AATAAC-------------------AACAACAACAACAACAACAGCAGCA---GCAGC-GGCA---GCAGCATCAACAG---------------------------TAACGGAAAT-----A------------ACATCAG------T------------------------AGCACCGGAAAC-----GGCAACAG-----------------------------------CAACAGCA-GCA----------------CCG------GCA---ACAGCAGCAACAA-------TAACAA---C-A------ACGCGGTGGCCA------------CAAACAATTTATCTAGGATAATA---------------A
droMoj3 scaffold_6680:17559033-17559273 + dmo_2521 ATCGTAAGCCCAATGGACCTGGCGGCGGTGGC-------ATGGAACAACAGTCAC--------------------------AGCAGGTAATGAACTAAAAGC----------------CAAAAGCAAACAAACACCAACGATA---ACAAC-CACA---ACATCATCAACAA------------------------------------C-----AACAACTACTACTACATCT--------------------------------------------------TTAACAACAA----------------------------------GCAGTA-C-T----GCAAAAACAACAATA------ATA---ACAACATCAACAACAACAGG---GT-------GGCTTTCGGTGGCGGCAA-------------------CT--AC-AAACTAACGAGAATAATACATTAAA
droGri2 scaffold_15110:18221208-18221412 + ATCGTAAGCCCAATGGACCTGGA---GGTGGC-------ATGGAGCAGCAGCCAC--------------------------AGCAGGTAATCAACTAGAAGCCAAACCAAAAACAAATCACCAACCCGTTA-------------------------------------------------------------------ACAACAAAAAC-----A------------ACAACCA-AT---A--------------------------------CATCATC--AACAACAACTA----------------------------------GCAGCC-C-T----GCAACAACAACAAT------------------------AA-------TAACAA---CTTGGCTTTCGGTGGCGGCAA---------------ACAACA--CAAAAACTAACG---------------A
dp5 XR_group6:5904965-5905175 - dps_3067 ATCGGAAGCCGAATGGTCCTGGC---GGTGGT-------CTGGAGCAGCAGC-----------------AGCAGCAGCCACAGCAGGTAATGAACTAAT-------------------CACCAC---------------TGAC---ACAAATAGAA-----AACATCGCCAAAGCAA---------------------------------------------------CATCCA-ACC---GTAACAACAAAAAAGAACAACCACT-------A---ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CAACAACAACA---GCAAGAAATA-------------CTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAAATAG-AA---------------A
droPer2 scaffold_47:405140-405350 - dpe_1717 ATCGGAAGCCGAATGGTCCTGGC---GGTGGT-------CTGGAGCAGCAGC-----------------AGCAGCAGCCACAGCAGGTAATGAACTAAT-------------------CACCAC---------------TGAC---ACAAATAGAA-----AACATCGCCAAAGCAA---------------------------------------------------CATCCA-ACC---GTAACAACAAAAAAGAACAACCACT-------A---ATC--AGCA-----TG----------------------------------GCGGCA-G-------------------CA------ACA---ACAACAGCAACAA-------ATACTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAAATAG-AA---------------A
droAna3 scaffold_13337:19470525-19470738 + dan_2728 ATCGGAAACCAAATGGCCCTG------GTGGT-------TTGGAACAGCAGCCAC--------------------------AGCAGGTAATGAATTAAT-------------------CAC---------------ACCAGAAACTACAAC-AGAA---ACATCATCGCTAAAGCAAA--------------------ACTACGATAA--------------------CATCTG-ATTAGTTTAACAAGAAAAATAAACATGCATT-------A---CC-----------CCA--------------------GCGCGACAAAAAGAGCAGCA-TCA----------------ATA------GTA---ACAACGTCTACGA-------TTGCAT---C-T------TGGTGGCGGC-----------------------------------------------------
droBip1 scf7180000396360:664935-665166 + ATCGGAAACCAAATGGCCCTG------GTGGT-------TTGGAACAGCAGCCAC--------------------------AGCAGGTAATGAATTAAT-------------------CAC---------------ACCAGAAACTACAAA-AGAAACTACATCTTCGCCAAAGCAAA--------------------ACTACGATAA--------------------CATCTG-ATTAGTTTAACAAGAAAAAA------------------AAACAT----GCACTATTCA--------------------GAGCGAAAGCATTATCTGCA-TTA----------------ATA------ATA---ACAACGTCTACGA-------TAGGAGCATC-T------TGGTGGCGGCCA-------------------AT---AAAAAC---AA---------------A
droKik1 scf7180000302391:696546-696779 + ATCGGAAACCGAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCG-----------------------CCACAGCAGGTAATGAACTAAT-------------------CAC-A------------CGACAGAA-CAACAACTTGAA---ACATCTTTGCCAAAGCAAAAAAAAAAAAGAACATGAAATACTACGATAACA---CA------------GCATCT----------------------------------------------------------------------------------------------GCGGCA-ACT-TAA-CAACC------ACA---ACAACAGCAACAGTATCTACAA------ATAACAA---CCT------GGGTGTCGGTCACACT----------TGAAA-T--TA--TA-AG-AA--AA-----------T
droFic1 scf7180000454113:2520370-2520564 + ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAACCGAA---ACAAC-TGAA---ACATCTTCGCCAAAGTAAA--------------------ACTACGATAAC-----A------------ACATCTG-ACTAGT--------------------------------AAACATC--GGCAACAGCCA----------------------------------GTGGCA-GCC----------------ATA------ACA---ACAAGGTCTACA-------------------T------GGGTGGTGGCCA-------------------CT--TAAA-------A---------------A
droEle1 scf7180000491193:4054992-4055173 - ATCGGAAACCGAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------GAACAAAA---ACAGT-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAA--------------------CATCTA-ACTAGT--------------------------------AAACATC--GGCAACAACCG----------------------------------GCGGCA-ACC----------------ATA------ACA---AC-----------------------------A------AGGTGGCGGTCA-------------------CT--TGAA-------A---------------A
droRho1 scf7180000773422:146699-146894 + ATCGGAAACCGAATGGTCCCGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------GAACAAAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--GGCAACAACCA----------------------------------GCGGCA-ACC----------------A----------------AAAGTCTACAA-------CAATAA---C-A------TGGTGGCGGTCA-------------------CT--TGAA-------A---------------A
droBia1 scf7180000302428:4367077-4367281 - ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAACAGAA---ACAAC-CGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAACACCACA------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAACCA----------------------------------TCGGCA-GCC----------------ATA------GCA---ACAAGGTCTACGA-------TAATAA---C-A------CGGTGGCGGTC---------------------T--TAG--------A---------------A
droTak1 scf7180000415254:490644-490857 + ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CAACA------------CAACAGCA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ATTAGT--------------------------------AAACATC--AGCAACAGCCA----------------------------------GCGGCA-AACTAAA-CA---------ACA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGCGGTCT-------------------CT--TGAAAACTAA-----------------A
droEug1 scf7180000409466:4206083-4206292 - ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAGCAGAA---ACAAC-TGAA---ACTTCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-AATAGT--------------------------------AAACATC--AACTACAACTA----------------------------------GCGGCA-ACT----------------ATA------ACA---ACAAAGTCTACAA-------TAATAA---C-A------TGGTGGAGGTCT-------------------CT--TTACAAATGAAA---------------G
dm3 chr3L:12115603-12115822 - ---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AGAAGGTAATGAACTAAT-------------------CACCAGCATCATCACAACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCGAAACAAA--------------------CCTACGATAAC-----A------------ACATCTAAATTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------GTCGCA-AGC----------------ATA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGAAGGCGT-------------------CT--TAAAAACTAAAC---------------A
droSim2 3l:11814145-11814366 - dsi_6527 ---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCACCACCACGACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCAAAACAAA--------------------ACTACGATAAC-----A------------ACATCTAAACTAGT--------------------------------AAACATCACAGCAACAGTCA----------------------------------GCGGCA-AGC----------------CTA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAACCGAAC---------------A
droSec2 scaffold_0:4300360-4300581 - ---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCACCACCACGACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCAAAACAAA--------------------ACTACGATAAC-----A------------ACATCTAAACTAGT--------------------------------AAACATCACAGCAACAGTCA----------------------------------GCGGCA-AGA----------------CTA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAACTGAAC---------------A
droYak3 3L:12163521-12163731 - dya_774 ---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCAGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCACCA---------CGACAGAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------GCGGCATACC----------------ATA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCCT-------------------TT--TGAAAACTGAAA---------------A
droEre2 scaffold_4784:12105245-12105470 - ---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCA---------CGACAGAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------ACGGCA-ACC----------------ATA------ACA---ACAAGGTCTAAACTAACAAA---GT-------GCATTACAGTTGCATTCA--TAAATAACCAC----------TAACAATCAGAA---------------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATCGGAAACCAAATGGCCCTGGT---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATCAACTAAA-------------------AACCAAAACCAGCCATCAAGCTACA---ACAAC-AACA---ACAATTTAACAACAAC--A--------------------ACCACGATAGC-----A------------ACAA-TA-ACC---------------------------------------------------ACTATCAGCATATAGAGAAGTGCAGCGCGGTAAAAGCAGCGGCA--------------------GTA------ACA---ACAACATCTACAACAACAAACATCAA---C-A------TGGTGGCGGCAACACT----------AACAACAAATATAAACTAAAA---------------ASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................ATCAGCATATAGAGAAGT...............................................................................................................................................................1812.00200020
...................TGGT---GGTGGT-------TTGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200011
....................................................................................................................................................................................................................................................................................................................GTGCAGCGCGGTAAAAGCAGCGGCA--------------------....................................................................................................................2512.00200110
...............................................................................................................................................................................................................................................................................................................GAGAAGTGCAGCGCGGTAAAAGCAGC............................................................................................................................................2611.00100010
............................................................................................................................................................................................................................................CC---------------------------------------------------ACTATCAGCATATAGAGAAGTGCA............................................................................................................................................................2611.00100010
................................................................................................................................................................CAATTTAACAACAAC--A--------------------ACCACGAT.......................................................................................................................................................................................................................................................................2411.00100010
..............................GT-------TTGGAGCAGCAGCCAC--------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.....................................................................................................................................................................................................................................................................................................................TGCAGCGCGGTAAAAGCAGCGGCA--------------------....................................................................................................................2411.00100100
................................................................................................................................................................................................................................................................................................................................AAAAGCAGCGGCA--------------------GTA------ACA---ACAAC................................................................................................2411.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---C-A------TGGTGGCGGCAACACT----------AACAAC...............................2711.00100010
......................................................................................................................................................................................................................................................................................................................................................................................TCTACAACAACAAACATCAA---C-A------TGGTGG.........................................................2811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---C-A------TGGTGGCGGCAACAC................................................2011.00100010
...........................................................................................................................................................................................................................................ACC---------------------------------------------------ACTATCAGCATATAGAGAAG................................................................................................................................................................2311.00101000
.................................................................................................................................................................................................................................................................................................ACTATCAGCATATAGAGAAG................................................................................................................................................................2011.00100010
.............TGGCCCTGGT---GGTGGT-------TTGGAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
..........................................................................................................................................................................................................................................................................................................ATATAGAGAAGTGCAGCGCGGT.....................................................................................................................................................2211.00100010
........................................................................................................................................................................................................................................................................................................................AGCGCGGTAAAAGCAGCGGC.........................................................................................................................................2011.00100010
....................................................................................................................................................................TTAACAACAAC--A--------------------ACCACGATA......................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................................................................CAGCATATAGAGAAGTGC.............................................................................................................................................................1811.00100010
.......................................TTGGAGCAGCAGCCAC--------------------------AGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...................................................................................................................................................................................................................................................................................................................AGTGCAGCGCGGTAAAAGCAGCGGC.........................................................................................................................................2511.00100010
..................CTGGT---GGTGGT-------TTGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
................................................................................................................................................................................................................................................................................................................................AAAAGCAGCGGCA--------------------GTA------ACA---AC...................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................................AAGTGCAGCGCGGTAAAAGCAGC............................................................................................................................................2311.00100010
..CGGAAACCAAATGGCCCTGGT---GGTGGT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
....................GGT---GGTGGT-------TTGGAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
....................................................................................................................................................................................................................................................................................................ATCAGCATATAGAGAAGTG..............................................................................................................................................................1911.00100010
..............................GT-------TTGGAGCAGCAGCCAC--------------------------AGCAGG..............................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................CATCAA---C-A------TGGTGGCGGCAACACT----------.....................................2411.00100010
....................................................................................................................................................................................................................................................................................................ATCAGCATATAGAGAAGTGC.............................................................................................................................................................2011.00100010
..........................................................................................................................................................................ACAAC--A--------------------ACCACGATAGC-----A------------ACAA-T............................................................................................................................................................................................................................................2311.00100010
................................................................................................................................................................CAATTTAACAACAAC--A--------------------ACCACGATAGC-----A------------..................................................................................................................................................................................................................................................2811.00100010
....................................................................................................................................................................................................................................................................................................ATCAGCATATAGAGAAGTGCA............................................................................................................................................................2111.00100010
...................TGGT---GGTGGT-------TTGGAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................................................................................................................................................................................................................GCAGCGCGGTAAAAGCAGCGGCA--------------------....................................................................................................................2311.00100100
.............................................................................................................................................................................................................................................................................................................................GGTAAAAGCAGCGGCA--------------------GTA------ACA---ACAAC................................................................................................2711.00100010
....................................................................................................................................................................................................................................CAA-TA-ACC---------------------------------------------------ACTATCAGCA..........................................................................................................................................................................1811.00100010
......................................................................................................................................................................................................................................................................................................................GCAGCGCGGTAAAAGCAGC............................................................................................................................................1911.00100010
................................................................................................................................................................................................................................................................................................................................AAAAGCAGCGGCA--------------------GTA------ACA---A....................................................................................................2011.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................AAACATCAA---C-A------TGGTGGCGGC.....................................................2111.00100010
.............................................................................................ACTAAA-------------------AACCAAAACCAGCCATC..............................................................................................................................................................................................................................................................................................................................................2311.00100010
.............................................................................................................................................................................................................................................................................................................................GGTAAAAGCAGCGGCA--------------------GT..................................................................................................................1811.00100010
..................CTGGT---GGTGGT-------TTGGAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................GTGCAGCGCGGTAAAAGCAGCGGC.........................................................................................................................................2411.00100010
.................................................................................................................................................................................A--------------------ACCACGATAGC-----A------------ACAA-T............................................................................................................................................................................................................................................1811.00100010
............................................................................................................................................................................................................................................................................................................ATAGAGAAGTGCAGCGCGG......................................................................................................................................................1911.00100100
.....................GT---GGTGGT-------TTGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................GTGGT-------TTGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................TGGT-------TTGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
................................................................................................................................................................................................................................................................................................................................AAAAGCAGCGGCA--------------------GTA------ACA---ACAACA...............................................................................................2511.00100100
.......................................TTGGAGCAGCAGCCAC--------------------------AGCAG...............................................................................................................................................................................................................................................................................................................................................................................................2120.50100010
......................................................................................................................................CAAGCTACA---ACAAC-AACA---ACA...................................................................................................................................................................................................................................................................................................................2130.33100010
droVir3
TTTGGGAAACGAATG-CCCAGGA---GATGGGTGCACTTCTTGAGCAACAGCTACAGCAAAACAACAAT----------------AATAAT--AATAAC-------------------AACAACAACAACAACAACAGCAGCA---GCAGC-GGCA---GCAGCATCAACAG---------------------------TAACGGAAAT-----A------------ACATCAG------T------------------------AGCACCGGAAAC-----GGCAACAG-----------------------------------CAACAGCA-GCA----------------CCG------GCA---ACAGCAGCAACAA-------TAACAA---C-A------ACGCGGTGGCCA------------CAAACAATTTATCTAGGATAATA---------------ASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................AGCATCAACAG---------------------------TAACGGAAAT-----A------------AC................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................T-----A------------ACATCAG------T------------------------AGCACCGGAAAC-----GGCAAC.....................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA-------TAACAA---C-A------ACGCGGTG.......................................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................CATCAG------T------------------------AGCACCGGAAAC-----GGCAAC.....................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................GGA---GATGGGTGCACTTCTTGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................CAACAG---------------------------TAACGGAAAT-----A------------ACATC.............................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................AA-------TAACAA---C-A------ACGCGGTGGCC....................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................GCAGCA---GCAGC-GGCA---GCAGCATC..............................................................................................................................................................................................................................................................................................................2360.171001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................ACAACAACAACAACAGCAGCA---...................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
.............................................................................................AATAAC-------------------AACAACAACAACA..................................................................................................................................................................................................................................................................................................................................................19200.153003000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................CA---ACAGCAGCAACAA-------TAACA............................................................................20200.102001000000000001000000000000000000000000000000000000000000000000
................................................................................................................................ACAACAACAGCAGCA---GCAGC-G............................................................................................................................................................................................................................................................................................................................21200.102001000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................A---GCAGC-GGCA---GCAGCATC..............................................................................................................................................................................................................................................................................................................18120.081000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................CAACAACAGCAGCA---GCAGC-GGC..........................................................................................................................................................................................................................................................................................................................22190.051000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................CAACAACAACAACAGCAGCA---GC.................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
....................................................................................................................................CAACAGCAGCA---GCAGC-GGCA---G.....................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................AACAACAGCAGCA---GCAGC-GGC..........................................................................................................................................................................................................................................................................................................................21200.051000001000000000000000000000000000000000000000000000000000000000
.................................................................CAAT----------------AATAAT--AATAAC-------------------AAC............................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000001000000000000000000000000000000000000000
.......................................................................................TAAT--AATAAC-------------------AACAACAACA.....................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AGCAGCA---GCAGC-GGCA---GCAGCA................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................A---ACAGCAGCAACAA-------TAACA............................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................CAGCAGCA---GCAGC-GGCA---GCAGCA................................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCA---ACAGCAGCAACAA-------TA...............................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................AACAACAACAACAACAACAGCAGCA---GCA................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATCGTAAGCCCAATGGACCTGGCGGCGGTGGC-------ATGGAACAACAGTCAC--------------------------AGCAGGTAATGAACTAAAAGC----------------CAAAAGCAAACAAACACCAACGATA---ACAAC-CACA---ACATCATCAACAA------------------------------------C-----AACAACTACTACTACATCT--------------------------------------------------TTAACAACAA----------------------------------GCAGTA-C-T----GCAAAAACAACAATA------ATA---ACAACATCAACAACAACAGG---GT-------GGCTTTCGGTGGCGGCAA-------------------CT--AC-AAACTAACGAGAATAATACATTAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................TACTACTACATCT--------------------------------------------------TTAACAACA.................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................ATCAACAACAACAGG---GT-------GGCT.................................................................2111.001100000
......................................................................................................................................................................CAACAA------------------------------------C-----AACAACTACTACTACATCT--------------------------------------------------TT........................................................................................................................................................................................2811.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................GGCAA-------------------CT--AC-AAACTAACGAGA.............2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGG---GT-------GGCTTTCGGTG..........................................................2511.001100000
.............................................................................................................................................TA---ACAAC-CACA---ACATCATCAAC...........................................................................................................................................................................................................................................................................................................2211.001100000
...................................................TCAC--------------------------AGCAGGTAATGAACTAAAAGC----------------...............................................................................................................................................................................................................................................................................................................................................................2511.001100000
...............GACCTGGCGGCGGTGGC-------ATGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................................ACAACAGTCAC--------------------------AGCAGGTA............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGTGGCGGCAA-------------------CT--AC-AAACT....................2311.001100000
............................................ACAACAGTCAC--------------------------AGCAGGTAATGAACT.....................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
.....................................................AC--------------------------AGCAGGTAATGAACTAAAA.................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................AAAAGCAAACAAACACCAAC..........................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................C--------------------------AGCAGGTAATGAACTAAAAGC----------------C..............................................................................................................................................................................................................................................................................................................................................................2311.001010000
ATCGTAAGCCCAATGGACC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................................................................................................................................................................................................................................................................................................................................A------ATA---ACAACATCAACAACAAC....................................................................................2180.131100000
droGri2
ATCGTAAGCCCAATGGACCTGGA---GGTGGC-------ATGGAGCAGCAGCCAC--------------------------AGCAGGTAATCAACTAGAAGCCAAACCAAAAACAAATCACCAACCCGTTA-------------------------------------------------------------------ACAACAAAAAC-----A------------ACAACCA-AT---A--------------------------------CATCATC--AACAACAACTA----------------------------------GCAGCC-C-T----GCAACAACAACAAT------------------------AA-------TAACAA---CTTGGCTTTCGGTGGCGGCAA---------------ACAACA--CAAAAACTAACG---------------ASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................CAA---CTTGGCTTTCGGTGGCGGCAA---------------ACA.................................2711.00110
............ATGGACCTGGA---GGTGGC-------ATGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101
dp5
ATCGGAAGCCGAATGGTCCTGGC---GGTGGT-------CTGGAGCAGCAGC-----------------AGCAGCAGCCACAGCAGGTAATGAACTAAT-------------------CACCAC---------------TGAC---ACAAATAGAA-----AACATCGCCAAAGCAA---------------------------------------------------CATCCA-ACC---GTAACAACAAAAAAGAACAACCACT-------A---ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CAACAACAACA---GCAAGAAATA-------------CTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAAATAG-AA---------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................CTA---C-T------TGGTGTCGGCAA-------------------CA--TA..........................2112.0020200000000
.........CGAATGGTCCTGGC---GGTGGT-------CTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
...........................................................................................GAACTAAT-------------------CACCAC---------------TGAC---ACA................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..CGGAAGCCGAATGGTCCTGGC---GGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...............................................GCAGC-----------------AGCAGCAGCCACAGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................CAACA---GCAAGAAATA-------------CTA---C-T------TGGT...........................................................2411.0010010000000
....GAAGCCGAATGGTCCTGGC---GGTGGT-------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000000
.................................................................................................................................................................................................................................................................................A---ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CAAC...............................................................................................................2111.0010010000000
......................................................................................................................................................................................................................................................AACAAAAAAGAACAACCACT-------A---................................................................................................................................................................................................2111.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................AATA-------------CTA---C-T------TGGTGTCGG......................................................1811.0010100000000
.......GCCGAATGGTCCTGGC---GGTGGT-------CTGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010001000000
...........AATGGTCCTGGC---GGTGGT-------CTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
...................TGGC---GGTGGT-------CTGGAGCAGCAGC-----------------A...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
..............................................................................................................................................................................CAA---------------------------------------------------CATCCA-ACC---GTAACAACAAAAAAG.....................................................................................................................................................................................................................2711.0010010000000
...................................................................................................................................................................................................................................................................................................................................................................................AGAAATA-------------CTA---C-T------TGGTGTC........................................................1911.0010100000000
ATCGGAAGCCGAATGGTCCTGGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000000
........................................................................................................................................................................................................................................................................CT-------A---ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CA.................................................................................................................2111.0010100000000
.........................................................................................................................................................GAA-----AACATCGCCAAAGCAA---------------------------------------------------CATCCA-AC........................................................................................................................................................................................................................................2711.0010010000000
..........GAATGGTCCTGGC---GGTGGT-------CTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.................................................................................................AT-------------------CACCAC---------------TGAC---ACAAATAGAA-----....................................................................................................................................................................................................................................................................................................................2211.0010010000000
.....................GC---GGTGGT-------CTGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................1611.0010000000100
..............................GT-------CTGGAGCAGCAGC-----------------AGCAGCAGCCAC....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010000000
..CGGAAGCCGAATGGTCCTGGC---GGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................GGC---GGTGGT-------CTGGAGCAGCAGC-----------------................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
.....................................................................................................................................................................................................................................................................................ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CAA................................................................................................................1911.0010010000000
.........................................................................................................................................................................................................................................................................T-------A---ATC--AGCA-----TG----------------------------------GCGGCG-G-------------------CA.................................................................................................................2011.0010100000000
.............TGGTCCTGGC---GGTGGT-------CTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................AATA-------------CTA---C-T------TGGTGTCGGCAA-------------------C...............................2211.0010100000000
......................C---GGTGGT-------CTGGAGCAGCAGC-----------------................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
ATCGGAAGCCGAATGGTCCTGGC---GGTGGT-------CTGGAGCAGCAGC-----------------AGCAGCAGCCACAGCAGGTAATGAACTAAT-------------------CACCAC---------------TGAC---ACAAATAGAA-----AACATCGCCAAAGCAA---------------------------------------------------CATCCA-ACC---GTAACAACAAAAAAGAACAACCACT-------A---ATC--AGCA-----TG----------------------------------GCGGCA-G-------------------CA------ACA---ACAACAGCAACAA-------ATACTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAAATAG-AA---------------ASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
ATCGGAAGCCGAATGGTCCTGGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2317.007700000
............................................................................................................................................................................................................................................................................................................................................................................................A-------ATACTA---C-T------TGGTGTCGGC.....................................................1914.004400000
..............GGTCCTGGC---GGTGGT-------CTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
......................................................................................GTAATGAACTAAT-------------------CACCAC---------------T.........................................................................................................................................................................................................................................................................................................................................2013.003300000
.............................................................................................................................................................................................................................................................................................................................................................................................................C-T------TGGTGTCGGCAA-------------------CA--TAGAAAT.....................2313.003300000
....................................................................................................................................................................................................................................................................................................................................................................................................ATACTA---C-T------TGGTGTCGGC.....................................................1813.003300000
............................................................................................................................................................................................................................................................................................................................................................................................A-------ATACTA---C-T------TGGTGTCGGCAA-------------------C...............................2213.003300000
..................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAA-------ATACTA---C-T------TGGTGTCGGC.....................................................2913.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................CAA-------ATACTA---C-T------TGGTGTCGGC.....................................................2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................CTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAA.......................2412.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................TACTA---C-T------TGGTGTCGGCA....................................................1812.002200000
..................................................................................................................................................................................................................................................................CAACCACT-------A---ATC--AGCA-----TG----------------------------------GCGGCA-G-------------------C..................................................................................................................2611.001001000
.....................................................................................................................................................................................................................................................CAACAAAAAAGAACAACCACT-------....................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................................................................................................AACAA-------ATACTA---C-T------TGGTGTCGGC.....................................................2311.001100000
......................................................................................................................................................................................................................................................................CACT-------A---ATC--AGCA-----TG----------------------------------GCGGCA-G-------------------...................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................A-------ATACTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAG.......................2811.001100000
..............................................................................................................................................................................................................................................................AGAACAACCACT-------A---ATC--AGCA-----T.................................................................................................................................................................................2111.001001000
.......................................................................................................................................................TAGAA-----AACATCGCCAAAGC......................................................................................................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA-------ATACTA---C-T------TGGTGTCGGC.....................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................CAACAA-------ATACTA---C-T------TGGTGTCGGCAA-------------------C...............................2711.001010000
...........................GTGGT-------CTGGAGCAGCAGC-----------------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................ACTA---C-T------TGGTGTCGGCAA-------------------CA--T...........................2111.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................ATACTA---C-T------TGGTGTCGGCAA-------------------CA--TAGA........................2611.001100000
...................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAA-------ATACTA---C-T------TGGTGTCGGC.....................................................2811.001100000
ATCGGAAGCCGAATGGTCCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........GAATGGTCCTGGC---GGTGGT-------CTGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.........................................................................................................................CAC---------------TGAC---ACAAATAGAA-----AACATCGCC...........................................................................................................................................................................................................................................................................................................2611.001100000
..........GAATGGTCCTGGC---GGTGGT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................AA-------ATACTA---C-T------TGGTGTCGGCAA-------------------CA--TAGAA.......................2911.001100000
............................................................................................................................................................................AGCAA---------------------------------------------------CATCCA-ACC---GTAACAACA...........................................................................................................................................................................................................................2311.001010000
droAna3
ATCGGAAACCAAATGGCCCTG------GTGGT-------TTGGAACAGCAGCCAC--------------------------AGCAGGTAATGAATTAAT-------------------CAC---------------ACCAGAAACTACAAC-AGAA---ACATCATCGCTAAAGCAAA--------------------ACTACGATAA--------------------CATCTG-ATTAGTTTAACAAGAAAAATAAACATGCATT-------A---CC-----------CCA--------------------GCGCGACAAAAAGAGCAGCA-TCA----------------ATA------GTA---ACAACGTCTACGA-------TTGCAT---C-T------TGGTGGCGGC-----------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........AATGGCCCTG------GTGGT-------TTGGAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2513.003000003
................................................................................................................................................................................AA--------------------ACTACGATAA--------------------CATCTG-ATTAGT....................................................................................................................................................................................................................................2412.002020000
....................G------GTGGT-------TTGGAACAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000020
............ATGGCCCTG------GTGGT-------TTGGAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2412.002010010
..................CTG------GTGGT-------TTGGAACAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000011
...........................................................................................................................................................................................................................................................AAATAAACATGCATT-------A---CC-----------CCA--------------------GC..........................................................................................................................................................2311.001010000
........................................................................................................................................................................................................TACGATAA--------------------CATCTG-ATTAGTTTAAC...............................................................................................................................................................................................................................2511.001000001
.................................................................................................................................................................................................................................................................................................................................................................................CAACGTCTACGA-------TTGCAT---C-T------TGGT...........................................................2411.001010000
....................................................................................................................................................................................................................................................................................................A--------------------GCGCGACAAAAAGAGCA...........................................................................................................................................1811.001001000
............ATGGCCCTG------GTGGT-------TTGGAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.....AAACCAAATGGCCCTG------GTGGT-------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
......AACCAAATGGCCCTG------GTGGT-------TTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............................GGT-------TTGGAACAGCAGCCAC--------------------------AGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............................................................................................................................................................................................................................................................TAAACATGCATT-------A---CC-----------CCA--------------------GCGCGACAAA..................................................................................................................................................2811.001000100
.......................................TTGGAACAGCAGCCAC--------------------------AGCAGA..............................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.............................................................................................................................................................................................................................................................ATAAACATGCATT-------A---CC-----------CCA--------------------GCGC........................................................................................................................................................2311.001010000
..................................................................................................................................................................................................................................................................................................................................................................................AACGTCTACGA-------TTGCAT---C-T------TGGTGGC........................................................2611.001010000
.........................................................................................................................................................GAA---ACATCATCGCTAAAGCAAA--------------------ACT............................................................................................................................................................................................................................................................................2511.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCTACGA-------TTGCAT---C-T------TGGTGGCGGC-----------------------------------------------------2611.001010000
..............GGCCCTG------GTGGT-------TTGGAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000010
..............GGCCCTG------GTGGT-------TTGGAACAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.............TGGCCCTG------GTGGT-------TTGGAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...............................T-------TTGGAACAGCAGCCAC--------------------------AGCAGAAC............................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................................................................................................AAT-------------------CAC---------------ACCAGAAACTAC.................................................................................................................................................................................................................................................................................................................................1811.001010000
..................CTG------GTGGT-------TTGGAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................ACTACAAC-AGAA---ACATCATCGCTAAAGC......................................................................................................................................................................................................................................................................................................2811.001010000
.............TGGCCCTG------GTGGT-------TTGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............GGCCCTG------GTGGT-------TTGGAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
...................TG------GTGGT-------TTGGAACAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
...................................................................................................................................................CAAC-AGAA---ACATCATCGCTAAAGC......................................................................................................................................................................................................................................................................................................2411.001010000
.................................................................................................................................................................................................................................................................................................................................................................................CAACGTCTACGA-------TTGCAT---C-T------TGGTGGC........................................................2711.001010000
..............................GT-------TTGGAACAGCAGCCAC--------------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................CGA-------TTGCAT---C-T------TGGTGGCGGC-----------------------------------------------------2111.001001000
..........................................................................................................................................................................AAAGCAAA--------------------ACTACGATAA--------------------CATCT............................................................................................................................................................................................................................................2311.001010000
..............................................................................................TTAAT-------------------CAC---------------ACCAGAAACTACAAC-.............................................................................................................................................................................................................................................................................................................................2311.001010000
...........AATGGCCCTG------GTGGT-------TTGGAACAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........................................................................................................................................................................................................................................................AAAATAAACATGCATT-------A---CC-----------CCA--------------------GC..........................................................................................................................................................2411.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................GTCTACGA-------TTGCAT---C-T------TGGT...........................................................2011.001010000
.......ACCAAATGGCCCTG------GTGGT-------TTGGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................AAACTACAAC-AGAA---ACATC.................................................................................................................................................................................................................................................................................................................1911.001010000
.........................................................................................................................................................................................................................................................................T-------A---CC-----------CCA--------------------GCGCGACAAAAAGAGCAGC.........................................................................................................................................2611.001100000
....................................................................................................................................................AAC-AGAA---ACATCATCGCTAAA........................................................................................................................................................................................................................................................................................................2111.001000001
....................................................CAC--------------------------AGCAGGTAATGAATT.....................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
............................................................................................................................................................................................................................................................AATAAACATGCATT-------A---CC-----------CC.................................................................................................................................................................................1911.001010000
droBip1
ATCGGAAACCAAATGGCCCTG------GTGGT-------TTGGAACAGCAGCCAC--------------------------AGCAGGTAATGAATTAAT-------------------CAC---------------ACCAGAAACTACAAA-AGAAACTACATCTTCGCCAAAGCAAA--------------------ACTACGATAA--------------------CATCTG-ATTAGTTTAACAAGAAAAAA------------------AAACAT----GCACTATTCA--------------------GAGCGAAAGCATTATCTGCA-TTA----------------ATA------ATA---ACAACGTCTACGA-------TAGGAGCATC-T------TGGTGGCGGCCA-------------------AT---AAAAAC---AA---------------ASizeHit CountTotal NormTotal
No Reads
droKik1
ATCGGAAACCGAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCG-----------------------CCACAGCAGGTAATGAACTAAT-------------------CAC-A------------CGACAGAA-CAACAACTTGAA---ACATCTTTGCCAAAGCAAAAAAAAAAAAGAACATGAAATACTACGATAACA---CA------------GCATCT----------------------------------------------------------------------------------------------GCGGCA-ACT-TAA-CAACC------ACA---ACAACAGCAACAGTATCTACAA------ATAACAA---CCT------GGGTGTCGGTCACACT----------TGAAA-T--TA--TA-AG-AA--AA-----------TSizeHit CountTotal NormTotal
No Reads
droFic1
ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAACCGAA---ACAAC-TGAA---ACATCTTCGCCAAAGTAAA--------------------ACTACGATAAC-----A------------ACATCTG-ACTAGT--------------------------------AAACATC--GGCAACAGCCA----------------------------------GTGGCA-GCC----------------ATA------ACA---ACAAGGTCTACA-------------------T------GGGTGGTGGCCA-------------------CT--TAAA-------A---------------ASizeHit CountTotal NormTotal
No Reads
droEle1
ATCGGAAACCGAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------GAACAAAA---ACAGT-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAA--------------------CATCTA-ACTAGT--------------------------------AAACATC--GGCAACAACCG----------------------------------GCGGCA-ACC----------------ATA------ACA---AC-----------------------------A------AGGTGGCGGTCA-------------------CT--TGAA-------A---------------ASizeHit CountTotal NormTotal
No Reads
droRho1
ATCGGAAACCGAATGGTCCCGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------GAACAAAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--GGCAACAACCA----------------------------------GCGGCA-ACC----------------A----------------AAAGTCTACAA-------CAATAA---C-A------TGGTGGCGGTCA-------------------CT--TGAA-------A---------------ASizeHit CountTotal NormTotal
No Reads
droBia1
ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAACAGAA---ACAAC-CGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAACACCACA------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAACCA----------------------------------TCGGCA-GCC----------------ATA------GCA---ACAAGGTCTACGA-------TAATAA---C-A------CGGTGGCGGTC---------------------T--TAG--------A---------------ASizeHit CountTotal NormTotal
No Reads
droTak1
ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CAACA------------CAACAGCA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ATTAGT--------------------------------AAACATC--AGCAACAGCCA----------------------------------GCGGCA-AACTAAA-CA---------ACA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGCGGTCT-------------------CT--TGAAAACTAA-----------------ASizeHit CountTotal NormTotal
No Reads
droEug1
ATCGGAAACCAAATGGCCCTGGC---GGTGGT-------TTGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCA------------CAGCAGAA---ACAAC-TGAA---ACTTCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-AATAGT--------------------------------AAACATC--AACTACAACTA----------------------------------GCGGCA-ACT----------------ATA------ACA---ACAAAGTCTACAA-------TAATAA---C-A------TGGTGGAGGTCT-------------------CT--TTACAAATGAAA---------------GSizeHit CountTotal NormTotal
No Reads
dm3
---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AGAAGGTAATGAACTAAT-------------------CACCAGCATCATCACAACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCGAAACAAA--------------------CCTACGATAAC-----A------------ACATCTAAATTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------GTCGCA-AGC----------------ATA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGAAGGCGT-------------------CT--TAAAAACTAAAC---------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................AACAGTCA----------------------------------GTCGCA-AGC----------------ATA------ACA---AC...................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATAA---C-A------TGGTGAAGGCGT-------------------CT--T...........................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TAA---C-A------TGGTGAAGGCGT-------------------CT--TA..........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C-A------TGGTGAAGGCGT-------------------CT--TAA.........................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000001000000000000000000
.....................................................AG--------------------------AGAAGGTAATGAACTAAT-------------------C..............................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................A------------ACATCTAAATTAGT--------------------------------AAACATC--AGC........................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCCCTGGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................CATC--AGCAACAGTCA----------------------------------GTCG..........................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AGCAACAGTCA----------------------------------GTCGCA-AGC----------------....................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACATC--AGCAACAGTCA----------------------------------GTCG..........................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................C-A------TGGTGAAGGCGT-------------------CT--TAAA........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GT--------------------------------AAACATC--AGCAACAGTCA----------------------------------G.............................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
............ATGGCCCTGGC---GGTGGT-------TCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------TGGTGAAGGCGT-------------------CT--TAAAAACTAAAC---------------.2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGTGGT-------TCGGAGCAGCAGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................C---GGTGGT-------TCGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................C---GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AGA.................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AGAA................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACAA-------TAATAA---C-A------TGGTGAAGGCGT-------------------CT--T...........................2812.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCCCTGGC---GGTGGT-------TCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATAA---C-A------TGGTGAAGGCGA-------------------................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------TGGTGAAGGCGT-------------------CT--TAAAAACT....................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCCTGGC---GGTGGT-------TCGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TAATAA---C-A------TGGTGAAGGCGT-------------------C...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGGAGCAGCAGCCAG--------------------------AGAAG...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CGCA-AGC----------------ATA------ACA---ACAAG................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................A---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGAAG.......................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CAAC-TGAA---ACATCTTCGCCGA.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................C---GGTGGT-------TCGGAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACAA-------TAATAA---C-A------TGGTGAAGGCGT-------------------C...............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............ATGGCCCTGGC---GGTGGT-------TCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCTGGC---GGTGGT-------TCGGAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................AACATC--AGCAACAGTCA----------------------------------GTCGC.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........AAATGGCCCTGGC---GGTGGT-------TCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AGCAACAGTCA----------------------------------GTCGCA-AGC----------------A...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCTGGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AGGTAATGAACTAAT-------------------CACCA..........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TCGGAGCAGCAGCCAG--------------------------AGAAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GCCCTGGC---GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T-------TCGGAGCAGCAGCCAG--------------------------AGAAG...............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.......................................................................................................................ACCAGCATCATCACAACAGC..........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GTGGT-------TCGGAGCAGCAGCCA...............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGAAGGCGT-------------------CT--TAAAAAC.....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
....................GGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................CA----------------------------------GTCGCA-AGC----------------ATA------ACA---AC...................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................A---C-A------TGGTGAAGGCGT-------------------CT--TAAAAACT....................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........AAATGGCCCTGGC---GGTGGT-------TCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................CAGCATCATCACAACAGCAGAA---AC.................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........CAAATGGCCCTGGC---GGTGGT-------TCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................ATCATCACAACAGCAGAA---A..................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CAA-------TAATAA---C-A------TGGTGAA........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AAATGGCCCTGGC---GGTGGT-------TC............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................AC-TGAA---ACATCTTCGCCGAAACA.....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................CAGTCA----------------------------------GTCGCA-AGC----------------ATA------ACA---A....................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CAACAGCAGAA---ACAAC-TGAA---A.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T-------TCGGAGCAGCAGCCAG--------------------------AGAA................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........AAATGGCCCTGGC---GGTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................GC---GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AG..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................GT--------------------------------AAACATC--AGCAACAGTCA----------------------------------GTCG..........................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AA-------TAATAA---C-A------TGGTGAAGGCG....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................GC---GGTGGT-------TCGGAGCAGCAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A-------TAATAA---C-A------TGGTGAAGGCGT-------------------C...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................AATAA---C-A------TGGTGAAGGCGT-------------------C...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TCTAAATTAGT--------------------------------AAACATC--AGC........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAAATGGCCCTGGC---GGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A-------TAATAA---C-A------TGGTGAAGGCGT-------------------................................2111.0010000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................ATAA---C-A------TGGTGAAGGCGT-------------------CT--T...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGGCGT-------------------CT--TAAAAA......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CCTGGC---GGTGGT-------TCGGAGCAGCAGCCAG--------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AAT-------------------CACCAGCATCATCACAACAGC..........................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAAATGGCCCTGGC---GGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....GAAACCAAATGGCCCTGGC---...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AA-------TAATAA---C-A------TGGTGAAGGCGT-------------------CT--T...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................T-------TCGGAGCAGCAGCCAG--------------------------AGA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AAACCAAATGGCCCTGGC---GGTGGT-------TC............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............TGGCCCTGGC---GGTGGT-------TCGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................CCCTGGC---GGTGGT-------TCGGAGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AACCAAATGGCCCTGGC---GGTGGT-------TC............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................GGTGGT-------TCGGAGCAGCAGCCAG--------------------------AG..................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................GT--------------------------------AAACATC--AGCAACAGTCA----------------------------------..............................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................TGGT-------TCGGAGCAGCAGCCAG--------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................CAAGGTCTACAA-------TAATAA---C-A------T..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......AACCAAATGGCCCTGGC---GGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TGGCCCTGGC---GGTGGT-------TCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................AGGTCTACAA-------TAATAA---C-A------TGG............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCCTGGC---GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................GCA-AGC----------------ATA------ACA---ACAAGGT..............................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................GC---GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................A----------------------------------GTCGCA-AGC----------------ATA------ACA---ACAAG................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------TGGTGAAGGCGT-------------------CT--TAAAAA......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...........................GTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CCCTGGC---GGTGGT-------TCGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGGAGCAGCAGCCAG--------------------------AGAAGGTAAT..........................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................CTGGC---GGTGGT-------TCGGAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA-------TAATAA---C-A------TGGTGAAGG......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................CGCA-AGC----------------ATA------ACA---ACAAGGTC.............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................GCAGCAGCCAG--------------------------AGAAGGTAAT..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................ACATC--AGCAACAGTCA----------------------------------GTCG..........................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............GCCCTGGC---GGTGGT-------TCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................C-A------TGGTGAAGGCGT-------------------CT--TAAAAACTA...................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AG--------------------------AGAAGGTAATGAACTAAT-------------------CACCA..........................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C-A------TGGTGAAGGCGT-------------------CT--T...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TACAA-------TAATAA---C-A------TGGTGA.........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................TGGC---GGTGGT-------TCGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................T-------------------CACCAGCATCATCACAACAG...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droSim2
---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCACCACCACGACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCAAAACAAA--------------------ACTACGATAAC-----A------------ACATCTAAACTAGT--------------------------------AAACATCACAGCAACAGTCA----------------------------------GCGGCA-AGC----------------CTA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAACCGAAC---------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................CCTGGC---GGTGGT-------TCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
...........AATGGCCCTGGC---GGTGGT-------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.........................................................................................................................................................................................................ACGATAAC-----A------------ACATCTAAACTAGT--------------------------------A...................................................................................................................................................................................................2411.00100010000000000000
........................................................................................................................................................................................................................................TAAACTAGT--------------------------------AAACATCACAGC........................................................................................................................................................................................2111.00100000100000000000
...................................................................................................................................................................CTTCGCCAAAACAAA--------------------ACTACGAT.......................................................................................................................................................................................................................................................................2311.00100010000000000000
...................TGGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........AATGGCCCTGGC---GGTGGT-------TCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..................................................................................................................................................................TCTTCGCCAAAACAAA--------------------ACTAC..........................................................................................................................................................................................................................................................................2111.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGA.........................2511.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAA........................2611.00100000000000010000
....................................................................................................................................................................................................................................................................................CATCACAGCAACAGTCA----------------------------------GCGG..........................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................A------TGGTGGAGGCGT-------------------CT--TGAAAACCGA..................2511.00100010000000000000
..................................................................................................................................................................................................................................................................................................TCA----------------------------------GCGGCA-AGC----------------CTA------ACA---ACAAGGTC.............................................................................................2611.00100000000001000000
............................................................................................AACTAAT-------------------CACCAGCACCACCAC................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................TACAA-------TAATAA---C-A------TGGTGGAGGCGT-------------------CT--............................2711.00100000001000000000
..............................................................................................................................CCACCACGACAGCAGAA---AC.................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
................................................................................................................................ACCACGACAGCAGAA---ACAAC-TGAA---AC....................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.............................GGT-------TCGGAGCAGCAGCCAC--------------------------A...................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
.............................................................................................................................................................................................................................................................................................AACAGTCA----------------------------------GCGGCA-AGC----------------CTA------ACA---ACA..................................................................................................2611.00100000000001000000
droSec2
---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCACCACCACGACAGCAGAA---ACAAC-TGAA---ACATCTTCGCCAAAACAAA--------------------ACTACGATAAC-----A------------ACATCTAAACTAGT--------------------------------AAACATCACAGCAACAGTCA----------------------------------GCGGCA-AGA----------------CTA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAACTGAAC---------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................ATAA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAA......................2611.0010010
..............................GT-------TCGGAGCAGCAGCCAC--------------------------AG..................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C-A------TGGTGGAGGCGT-------------------CT--TGAAAAC.....................2511.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................AATAA---C-A------TGGTGGAGGCGT-------------------CT--............................2111.0010100
......................C---GGTGGT-------TCGGAGCAGCAGCC................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
..........AAATGGCCCTGGC---GGTGGT-------TCGGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................CTACAA-------TAATAA---C-A------TGGTGGAGGC.....................................................2411.0010010
.....................................................................................................................................................................................................................................................................................ATCACAGCAACAGTCA----------------------------------GCGGCA-AGA----------------CT..................................................................................................................2711.0010010
.................................................................................................................................................................................................................................................................................................GTCA----------------------------------GCGGCA-AGA----------------CTA------ACA---ACAAGGT..............................................................................................2611.0010010
..................CTGGC---GGTGGT-------TCGGAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................TAATAA---C-A------TGGTGGAGGCG....................................................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................GCA-AGA----------------CTA------ACA---ACAAGGT..............................................................................................1911.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................ACAA-------TAATAA---C-A------TGGTGGAGG......................................................2111.0011000
.....................................................................................................................................................AC-TGAA---ACATCTTCGCCAA.........................................................................................................................................................................................................................................................................................................1911.0011000
..........................GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGCGT-------------------CT--TGAAAACTG...................2211.0010100
............................................................................................................................................................................................................................................................................................................................................................................................A-------TAATAA---C-A------TGGTGGAGGC.....................................................1911.0010010
...........................GTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2811.0010010
............................................................................................................................................................................................................ATAAC-----A------------ACATCTAAACTAGT--------------------------------A...................................................................................................................................................................................................2111.0010010
droYak3
---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCAGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCACCA---------CGACAGAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------GCGGCATACC----------------ATA------ACA---ACAAGGTCTACAA-------TAATAA---C-A------TGGTGGAGGCCT-------------------TT--TGAAAACTGAAA---------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................GTCA----------------------------------GCGGCATACC----------------ATA------ACA---ACAAGGT..............................................................................................2712.00202000000000
..................................................................................................................................................................................................................................................................................AACATC--AGCAACAGTCA----------------------------------GCGGC.........................................................................................................................................2211.00100000010000
................................................................................................AAT-------------------CACCACCA---------CGACAGAA---A..................................................................................................................................................................................................................................................................................................................................2011.00101000000000
....................................................................................................................................................................................................................................................................................CATC--AGCAACAGTCA----------------------------------GCGGC.........................................................................................................................................2011.00100000010000
....................................................................................................................................................................................................................................................................................CATC--AGCAACAGTCA----------------------------------GCGGCA........................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................AA---C-A------TGGTGGAGGCCT-------------------TT--TGAAAACTG...................2711.00100000010000
..............................GT-------TCAGAGCAGCAGCCAC--------------------------AGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................................................................................................................................................................................................................................................................................................A----------------------------------GCGGCATACC----------------ATA------ACA---ACAAGGTCTAC..........................................................................................2811.00101000000000
.................................................................................AGCAGGTAATGAACTAAT-------------------CACCACC........................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
.............................GGT-------TCAGAGCAGCAGCCAC--------------------------AGCAGGT.............................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................................................................................................................................................................................................................................TCTA-ACTAGT--------------------------------AAACATC--AGCAACAGT..................................................................................................................................................................................2611.00101000000000
...............................................................................................................................................................................AAA--------------------ACTACGATAAC-----A------------ACATC.............................................................................................................................................................................................................................................2011.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TAATAA---C-A------TGGTGGAGGCCT-------------------................................2011.00100010000000
..............................................AGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------C..............................................................................................................................................................................................................................................................................................................................................................2811.00100100000000
.........CAAATGGCCCTGGC---GGTGGT-------TCAGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................TACAA-------TAATAA---C-A------TGGTGGAGGC.....................................................2311.00100100000000
.....................................................................................................................................................................................................................................................................................ATC--AGCAACAGTCA----------------------------------GCGGC.........................................................................................................................................1911.00100000010000
.................................................................................................................................................................................................................................................................................................GTCA----------------------------------GCGGCATACC----------------ATA------ACA---AC...................................................................................................2211.00101000000000
.........CAAATGGCCCTGGC---GGTGGT-------TCAGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
........................................CAGAGCAGCAGCCAC--------------------------AGCAGAA.............................................................................................................................................................................................................................................................................................................................................................................................2220.50100000010000
droEre2
---GGAAACCAAATGGCCCTGGC---GGTGGT-------TCGGAGCAGCAGCCAC--------------------------AGCAGGTAATGAACTAAT-------------------CACCAGCA---------CGACAGAA---ACAAC-TGAA---ACATCTTCGCCAAAGCAAA--------------------ACTACGATAAC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--AGCAACAGTCA----------------------------------ACGGCA-ACC----------------ATA------ACA---ACAAGGTCTAAACTAACAAA---GT-------GCATTACAGTTGCATTCA--TAAATAACCAC----------TAACAATCAGAA---------------CSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............ATGGCCCTGGC---GGTGGT-------TCGGAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................28154.005400000054
...........AATGGCCCTGGC---GGTGGT-------T.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..........................GGTGGT-------TCGGAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
....GAAACCAAATGGCCCTGGC---GGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................GCATTCA--TAAATAACCAC----------............................1811.0010100000
............ATGGCCCTGGC---GGTGGT-------TCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
..................CTGGC---GGTGGT-------TCGGAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
.............................................................................................ACTAAT-------------------CACCAGCA---------CGACAGAA---A..................................................................................................................................................................................................................................................................................................................................2311.0010001000
.....................................................................................................................................................................................................................................................................................ATC--AGCAACAGTCA----------------------------------ACGGC.........................................................................................................................................1911.0010100000
..............................................................................................................................................A---ACAAC-TGAA---ACATCTTCGCG...........................................................................................................................................................................................................................................................................................................2111.0011000000
................................................................................................................................................................................................................................................T--------------------------------AAACATC--AGCAACAGTCA----------------------------------AC............................................................................................................................................2111.0010001000
..............GGCCCTGGC---GGTGGT-------TCGGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
..................................................................................................................................................................................................................................................................................AACATC--AGCAACAGTCA----------------------------------ACGGCA-ACC----------------AT..................................................................................................................2811.0011000000
........................................................................................AATGAACTAAT-------------------CACCAGCA---------CG............................................................................................................................................................................................................................................................................................................................................2111.0010100000
.................................................................................AGCAGGTAATGAACTAAT-------------------CACCACTG---------..............................................................................................................................................................................................................................................................................................................................................2611.0010001000
...............................................................................................................................................................................................................AC-----A------------ACATCTA-ACTAGT--------------------------------AAACATC--A..........................................................................................................................................................................................2411.0010001000
................................................................................................AAT-------------------CACCAGCA---------CGACAGA.......................................................................................................................................................................................................................................................................................................................................1811.0010001000
.......ACCAAATGGCCCTGGC---GGTGGT-------TC............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
.....................................................................................................................................................................................................................................................................................ATC--AGCAACAGTCA----------------------------------ACGGCA-.......................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGCATTCA--TAAATAACCAC----------TAAC........................2311.0010100000
...............GCCCTGGC---GGTGGT-------TCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..........................................................................................................................................................................................................................................................................................AGCAACAGTCA----------------------------------ACGGCA-ACC----------------AT..................................................................................................................2211.0010001000

Generated: 05/17/2015 at 11:37 PM