ID:

dwi_650

 Coordinate:

scf2_1100000004511:8118142-8118292 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.1 -26.6 -26.6

Flybase annnotation

exon [dwil_GLEANR_17763:1]; CDS [Dwil\GK17471-cds]; intron [Dwil\GK17471-in]

Repeatable elements

NameClassFamilyStrand
(ATG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
ATGTTAACATCGAATATATTCAGGATCTGAGCTCTCTTTCCCGCTTGGAGGTAAGAAGAAGATGATCATGATGATGATGATGATGATGATGATGAATGGATCGCAACACAAAATGCTGGATGCAAAATGGAAAAAACTTTGTATTTTGTGTAAACCCGCTAACTCCTCACCATCCCTTCCTCTAATTCGATAAAGAAAATTTCAAGAAAAACGAACAACCAAAAGATTGAAAAGCAAAGTTAAAGAAAAGC
**************************************************...(((.((((((.(((((.((....)).))))).))((((.(((..(((..((.(((((((((((........................)))))))))))......))....)))))).)))).)))).)))..(((......)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 V118
embryo
 V117
male body		 M045
female body
...................TCAGGATCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 26 0 1 6.00 6 6 0 0 0
.................ATTCAGGATCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 28 0 1 6.00 6 6 0 0 0
.....................AGGATCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 24 0 1 4.00 4 4 0 0 0
...............ATATTCAGGATCTGAGCTCT........................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0
..........CGAATATATTCAGGATCTGAGCT.......................................................................................................................................................................................................................... 23 0 1 2.00 2 1 0 1 0
........................................................................................................................................................................................................................AACCAAAAGATTGAAAAGC................ 19 0 1 1.00 1 0 1 0 0
...................TCAGGATCTGAGCTCTCTTTCCTGCT.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0
...................TCAGGATCTGAGCTCTCTTTCCCGCC.............................................................................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0
...............ATATTCAGGATCTGAGCTCTCT...................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
.....................AGGATCTGAGCTCTCTTTCCCGCTT............................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
....................CAGGATCTGAGCTCTCTTTCCCGCC.............................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0
..............TATATTCAGGATCTGAGCTCT........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0
........................ATCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0
............AATATATTCAGGATCTGAGC........................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
....................CAGGATCTGAGCTCTCTTTCCCGCTTGAG.......................................................................................................................................................................................................... 29 2 1 1.00 1 1 0 0 0
...................TCAGGATCTGAGCTCTCTTTCC.................................................................................................................................................................................................................. 22 0 1 1.00 1 1 0 0 0
.................ATTCAGGATCTAAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0
.....................CGGATCTGAGCTCTCTTTCCCGCC.............................................................................................................................................................................................................. 24 2 1 1.00 1 1 0 0 0
.................ATTCAGGATCTGAGCTCTCTTTCCC................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
.................ATTCAGGATCTGAGCTCTCTTTCCCGCTT............................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0
..................TTCAGGATCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
.................................................................................GATGATGATGATGAATGGAT...................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0
.........................TCTGAGCTCTCTTTCCCGCT.............................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.........................................................................ATGATGATGATGATGATGAT.............................................................................................................................................................. 20 0 20 0.65 13 0 13 0 0
...................................CTTTCCCGCTTGGAGGAC...................................................................................................................................................................................................... 18 2 7 0.29 2 2 0 0 0
..............................................................................GATGATGATGATGATGAATG......................................................................................................................................................... 20 0 9 0.22 2 0 2 0 0
........................................................................GATGATGATGATGATGATGAT.............................................................................................................................................................. 21 0 20 0.10 2 0 0 0 2
............................................................................................................................................................................................GATTAAGAACATTTCTAGAAAA......................................... 22 3 12 0.08 1 0 1 0 0
.......................................................................................GATGATGACTGGATTGCATC................................................................................................................................................ 20 3 13 0.08 1 0 0 1 0
..........................................................................................AATGAACGGATCGCAGCAC.............................................................................................................................................. 19 3 13 0.08 1 0 0 0 1
.................................................................................................................................................................................................................................ATTGAACAGCAACGTTAAT....... 19 3 20 0.05 1 0 0 0 1
...............................................................................ATGATGATGATGATGAAT.......................................................................................................................................................... 18 0 20 0.05 1 0 1 0 0
..........................................................................TGATGATGATGATGATGATGGATG......................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0
..................TTAAGGATCTGAGCACTGTT..................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0
..................................................................CATGATGATGATGATGATGATGA.................................................................................................................................................................. 23 0 20 0.05 1 0 0 1 0
.......................................................................TGATGATGATGATGATGATGATGAA........................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

TACAATTGTAGCTTATATAAGTCCTAGACTCGAGAGAAAGGGCGAACCTCCATTCTTCTTCTACTAGTACTACTACTACTACTACTACTACTACTTACCTAGCGTTGTGTTTTACGACCTACGTTTTACCTTTTTTGAAACATAAAACACATTTGGGCGATTGAGGAGTGGTAGGGAAGGAGATTAAGCTATTTCTTTTAAAGTTCTTTTTGCTTGTTGGTTTTCTAACTTTTCGTTTCAATTTCTTTTCG
**************************************************...(((.((((((.(((((.((....)).))))).))((((.(((..(((..((.(((((((((((........................)))))))))))......))....)))))).)))).)))).)))..(((......)))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
.........................AGACTCGAGAGAAAGGGCGAA............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0
....................................................................................................................................................................GGAGTGGTAGGCAAGGTCAT................................................................... 20 3 8 0.13 1 0 1 0
..........................................................................................................................................................................CCAGGGAAGCAGATTAAGC.............................................................. 19 3 19 0.05 1 1 0 0
..................................................................................................................................................ACACATTTGGGGGATTTAA...................................................................................... 19 3 20 0.05 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:8118092-8118342 + dwi_650 ATGTTAACATCGAATA-----TAT---------TCAGGATCTGAGCTCTCTTTCCCGCTTGGAGGTAAGAAGAAGATGAT---------CATGATGATGATG------ATGATGAT---GATGATGAATG------------------------------------------------------------GA------------------------------------------------------TC-GCAACACAAAATGCTGGA------TGCAAAATGGAAAAAACTTTGTATTTTGTGTAAACCCGCTAACTCCTCACCATCCC-TT-CCTCTAATTCGATAAAGAAAATTTCAA---------------GAAAAACGAACAACCAAAA--------------------GATTGAAAAGCA----------------------AAGT--TAAAGAAAAGC
droVir3 scaffold_12970:6976754-6976961 + GACGTTG--ATGAT---------------------------------------------------------------------------TA------TGATGTTAATGATAA---T---GATTATGAAAATAGTAC--------AATTGAAATATCGATTGTTGATTTAAAAACGCTTTAAATTCGCCCTTGTGCAACTACAACAACAACAACAACAACAACAAACAGTCGCATA-------------------------------------------------------------------------------------------------------------------------------------------AAGCA--------------------ATATGAAAAAGAGAAGAATACGTATGA-AAAACACGAAAAGTGGAGAAACAATAAGAGCGAGAACT
droMoj3 scaffold_6473:12450829-12451014 + GATGATG--ATGAG---------------------------------------------------------------------------CAGGATGATGACG------ATAA---TGATGATGATA---TT---GCTGGTGTCAAATCAAATTGATGATTGTTGATTTTGGAATGCTTAAAGTGTGCCCTTGCTCAACAACAACAACAACAACAACAACAACAA----------------------------------------------------------------------------------------------------------------------CAA------CAATAAGAAACAGAGTCACA---AAGC------------------------------------AGTAGAGAAAGA----------------------AAAG--TAAAGCAAAGC
droGri2 scaffold_15126:481113-481305 - AATAATATAATAAT------------------------------------------------------------------------------------AATGATAATAA------T---AATAATG---------TTTGTTTGAAATTT-TTAAATGAGTATAAATGTAGAAAT---------------------------------------------------------------------------------------ATCGTA------TATGAATGAGAAAAACAAGCGAACTCTTCACAGCCCCGCCCTCTCCATACTTTC-------C---TTTTC---ACATGCAACACCAA---------------GCAA---------------------AACG-----------AAACAGAAACAAATTATTTTAAAAGTG------AATT--T--------AA
dp5 XR_group8:8851329-8851480 + ATGTCAACATCGAATA-----CAT---------CCAGGACTTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GAGACCA----------------------------------------------------------------------------------------------------------ACGTCAACGGACAGTCCGGTTCAGGCCACCCATCT-------------------------------------------------------------------------------------C---TAACCCCC------AAAAATCGAAGGAATCTCAACGAGAAA--------------------ATAAA--------------------------------------------AAA--AAAAAGAAAAAC
droPer2 scaffold_50:354926-355076 - ATGTCAACATCGAATA-----CAT---------CCAGGACTTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GAGACCA----------------------------------------------------------------------------------------------------------ACGTCAACGGACAGTCCGGTTCAGGCCACCCATCT-------------------------------------------------------------------------------------C---TAACCCCC------AAAAATCGAAGGAATCTCAACGAGAAA--------------------AAA-A--------------------------------------------AAA--AAAAAGAAAAAC
droAna3 scaffold_13337:7902756-7902809 + ACGTCCAAATCGACTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396541:59253-59306 + ATGTCCAAATCGACTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302414:741300-741418 + AAAACCC--TTAAATTTTTTAACCGCAAACCGACTTGTTTTTAACTATCTTTT---GATC----TCAAGCTAAATAAAAAATACAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAA--------------------ATGAA----------------------------------AACGAAGGAAAAGT--TAGAGGAAAGC
droFic1 scf7180000452851:3583-3684 + ATTTTAAGATCGAAGA-----TATGATAACTGATTTGTATGTAAATTTTCTGTGCCGTAACA--GTATGATGATGATGAT---------GATGGTGGTGGTG------ATGATGAT---GATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GA
droEle1 scf7180000491013:1040359-1040453 + AGCCA------------------A---------CCCACTCCTCACCTTACTTCCCCAATACACACTGC---------------------------------AAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATAAAAAGAATAAAA---------------AAAAAAAAG--AATAAAA--------------------------------------------AAA--AAAGAATAAAAT
droRho1 scf7180000757774:682-738 - ATGTGAACATCGAATA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302126:504043-504106 - AAATCGGTAATAAAAA-----A-----------------------------------------------------------TAAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT----------AAATAAAATAAAAAAAAA--------------------------------------------TAA--AATAAAAAAAAA
droTak1 scf7180000415617:34001-34033 - ATGCCCCTGCTGA------------------------------------------------------------------------------------TGATGACAATGA------T---GATGATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409032:238440-238491 - TCGCTAAAAAAAAAA------------------------------------------------------------------TAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAAA--------------------TCGAA--------------------------------------------TAA--CAAAAGAAATAC
dm3 chrX:20874290-20874375 - TTTTTATCGCCGC---------------------GAGGACAGATGCCCAGAATGACGATTGGTA---------------------------------TGATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------ACCATTCCGG-------------------------AATGCTGGA------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droSim2 3l:8527411-8527640 - dsi_13936 ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------TCGTCCCGTTC--------CGTC-TCATCTCGGAATTCGAAT------TCGAAATTGGAAGCGGACCGGTATCGGTTAAGAAATCGGCATCGCATTTGGAGCCCGTT-TCACCAAATCCCC------AA-AGACGTTGGAATTCCGACCAGGGA--------------------ATAGGAATACGAAATGCGTGTGCGCCA----------------------AATT--TTCTTCAAAAT
droSec2 scaffold_0:18150690-18150775 - AAGAA-----GGAAAA-----CAA---------CAAGGC--------------------------------------------------------GACGATG------TTGTTGAT---GATGATGA------------------------------------------------------ATTTGCCCTGATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACACAAAA--------------------ACAAA--------------------------------------------CAA--AA-AAAAAAAAA
droYak3 3L:3172269-3172486 + ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-----------T---C-----------------------------------------------------------------------------------------------------------GTCCCGT--------CCCGTCT------CGGAAT-CGAGATCGCAATCGAAATTGGATGCGGATTGG-------------ATCGGCATCGGATTA-GAGCCCGAAATCCCAAAATCCCC------AAAAGACGTTGGAATTTCGACCAGGGA--------------------ATAGGAATACGAAATGCGTGTGCGCCA----------------------AATT--TCTTCAAAATC
droEre2 scaffold_4784:5304799-5304855 + ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ATGTTAACATCGAATA-----TAT---------TCAGGATCTGAGCTCTCTTTCCCGCTTGGAGGTAAGAAGAAGATGAT---------CATGATGATGATG------ATGATGAT---GATGATGAATG------------------------------------------------------------GA------------------------------------------------------TC-GCAACACAAAATGCTGGA------TGCAAAATGGAAAAAACTTTGTATTTTGTGTAAACCCGCTAACTCCTCACCATCCC-TT-CCTCTAATTCGATAAAGAAAATTTCAA---------------GAAAAACGAACAACCAAAA--------------------GATTGAAAAGCA----------------------AAGT--TAAAGAAAAGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................TCAGGATCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2616.00660000
......................AT---------TCAGGATCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2816.00660000
...................................AGGATCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2414.00440000
...............A-----TAT---------TCAGGATCTGAGCTCT................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00220000
..........CGAATA-----TAT---------TCAGGATCTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00210100
..................................................................................................................................................................................................................................................................................................................................................................................................AACCAAAA--------------------GATTGAAAAGC........................................1911.00100010
.................................TCAGGATCTGAGCTCTCTTTCCCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
...............A-----TAT---------TCAGGATCTGAGCTCTCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
...................................AGGATCTGAGCTCTCTTTCCCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..................................CAGGATCTGAGCTCTCTTTCCCGCC......................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..............TA-----TAT---------TCAGGATCTGAGCTCT................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
......................................ATCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
............AATA-----TAT---------TCAGGATCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
..................................CAGGATCTGAGCTCTCTTTCCCGCTTGAG..................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
.................................TCAGGATCTGAGCTCTCTTTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000
......................AT---------TCAGGATCTGAGCTCTCTTTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
......................AT---------TCAGGATCTGAGCTCTCTTTCCCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
.......................T---------TCAGGATCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110000
..............................................................................................................GATGAT---GATGATGAATG------------------------------------------------------------GA------------------------------------------------------T..........................................................................................................................................................................................................................2011.00100010
.......................................TCTGAGCTCTCTTTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000
................................................................................................ATGATG------ATGATGAT---GATGAT....................................................................................................................................................................................................................................................................................................................................................20200.6513000130
.................................................CTTTCCCGCTTGGAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................1870.29220000
.....................................................................................................G------ATGATGAT---GATGATGAATG------------------------------------------------------------...................................................................................................................................................................................................................................................................................2090.22200020
...............................................................................................GATGATG------ATGATGAT---GATGAT....................................................................................................................................................................................................................................................................................................................................................21200.10202000
............................................................................................................ATGATGAT---GATGATGAAT................................................................................................................................................................................................................................................................................................................................................18200.05100010
.........................................................................................CATGATGATGATG------ATGATGAT---GA........................................................................................................................................................................................................................................................................................................................................................23200.05100100
..............................................................................................TGATGATG------ATGATGAT---GATGATGAA.................................................................................................................................................................................................................................................................................................................................................25200.05100100
droVir3
GACGTTG--ATGAT---------------------------------------------------------------------------TA------TGATGTTAATGATAA---T---GATTATGAAAATAGTAC--------AATTGAAATATCGATTGTTGATTTAAAAACGCTTTAAATTCGCCCTTGTGCAACTACAACAACAACAACAACAACAACAAACAGTCGCATA-------------------------------------------------------------------------------------------------------------------------------------------AAGCA--------------------ATATGAAAAAGAGAAGAATACGTATGA-AAAACACGAAAAGTGGAGAAACAATAAGAGCGAGAACTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................TGATAA---T---GATTATGAAAATAGTAC--------AAT..............................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000000001100000000000000000000000000000000000
..................................................................................................................................................................................................CAACTACAACAACAACAACAACAA.......................................................................................................................................................................................................................................................24200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
GATGATG--ATGAG---------------------------------------------------------------------------CAGGATGATGACG------ATAA---TGATGATGATA---TT---GCTGGTGTCAAATCAAATTGATGATTGTTGATTTTGGAATGCTTAAAGTGTGCCCTTGCTCAACAACAACAACAACAACAACAACAACAA----------------------------------------------------------------------------------------------------------------------CAA------CAATAAGAAACAGAGTCACA---AAGC------------------------------------AGTAGAGAAAGA----------------------AAAG--TAAAGCAAAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................ACAACAACAACAACAACAACAA----------------------------------------------------------------------------------------------------------------------CAA------CA................................................................................................................27200.051100000
...........................................................................................................................................................................................................CAACAACAACAACAACAACAA----------------------------------------------------------------------------------------------------------------------C..........................................................................................................................22200.051000010
.................................................................................................................................................................................................TCAACAACAACAACAACAACAAC.........................................................................................................................................................................................................................................................23200.051100000
...................................................................................................................................................................................................AACAACAACAACAACAACA...........................................................................................................................................................................................................................................................19200.051100000
droGri2
AATAATATAATAAT------------------------------------------------------------------------------------AATGATAATAA------T---AATAATG---------TTTGTTTGAAATTT-TTAAATGAGTATAAATGTAGAAAT---------------------------------------------------------------------------------------ATCGTA------TATGAATGAGAAAAACAAGCGAACTCTTCACAGCCCCGCCCTCTCCATACTTTC-------C---TTTTC---ACATGCAACACCAA---------------GCAA---------------------AACG-----------AAACAGAAACAAATTATTTTAAAAGTG------AATT--T--------AASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................CAGCCCCGCCCTCTCCATA...............................................................................................................................................1911.00110
dp5
ATGTCAACATCGAATA-----CAT---------CCAGGACTTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GAGACCA----------------------------------------------------------------------------------------------------------ACGTCAACGGACAGTCCGGTTCAGGCCACCCATCT-------------------------------------------------------------------------------------C---TAACCCCC------AAAAATCGAAGGAATCTCAACGAGAAA--------------------ATAAA--------------------------------------------AAA--AAAAAGAAAAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............AATA-----CAT---------CCAGGACTTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
...........GAATA-----CAT---------CCAGGACTTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010000
............AATA-----CAT---------CCAGGACTTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
.......CATCGAATA-----CAT---------CCAGGACTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.............ATA-----CAT---------CCAGGACTTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.....................................GACTTGAGCTCGCTCTCCCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................T---------CCAGGACTTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000000
ATGTCAACATCGAATA-----CAT---------CCAGGACTTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
...............................................................................................................................................................................................................................................CCACCCATCT-------------------------------------------------------------------------------------C---TAACCCCC------AA...............................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................AAA--------------------ATAAA--------------------------------------------AAA--AAAAAGAAG...20200.0510100000000
droPer2
ATGTCAACATCGAATA-----CAT---------CCAGGACTTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GAGACCA----------------------------------------------------------------------------------------------------------ACGTCAACGGACAGTCCGGTTCAGGCCACCCATCT-------------------------------------------------------------------------------------C---TAACCCCC------AAAAATCGAAGGAATCTCAACGAGAAA--------------------AAA-A--------------------------------------------AAA--AAAAAGAAAAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........CGAATA-----CAT---------CCAGGACTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004400000
.............ATA-----CAT---------CCAGGACTTGAGCTCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
.....AACATCGAATA-----CAT---------CCAGGACTTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2913.003300000
..........CGAATA-----CAT---------CCAGGACTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
.............ATA-----CAT---------CCAGGACTTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
...............A-----CAT---------CCAGGACTTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
........ATCGAATA-----CAT---------CCAGGACTTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2912.002200000
.............ATA-----CAT---------CCAGGACTTGAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................AT---------CCAGGACTTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.......................................CTTGAGCTCGCTCTCCCGCTTGGAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
..GTCAACATCGAATA-----CAT---------CCAGGACTTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.............ATA-----CAT---------CCAGGACTTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.................................CCAGGACTTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...........GAATA-----CAT---------CCAGGACTTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........CGAATA-----CAT---------CCAGGACTTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.............ATA-----CAT---------CCAGGACTTGAGCTCGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..........CGAATA-----CAT---------CCAGGACTTGAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.......................T---------CCAGGACTTGAGCTCGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...................................AGGACTTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..................................CAGGACTTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100
...........GAATA-----CAT---------CCAGGACTTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droAna3
ACGTCCAAATCGACTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................GGACCTGAGCTCGCTCTCCCGCTT.....................................................................................................................................................................................................................................................................................................................................................................................................................2412.002020000
...........GACTA-----CAT---------CCAGGACCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000002
..............TA-----CAT---------CCAGGACCTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002200000
...............A-----CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
............ACTA-----CAT---------CCAGGACCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................AT---------CCAGGACCTGAGCTCGCTCTCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.......AATCGACTA-----CAT---------CCAGGACCTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
..............TA-----CAT---------CCAGGACCTGAGCTCGCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.......................T---------CCAGGACCTGAGCTCGCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.............CTA-----CAT---------CCAGGACCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
.......................T---------CCAGGACCTGAGCTCGCTCTCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
...............A-----CAT---------CCAGGACCTGAGCTCGCTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
........ATCGACTA-----CAT---------CCAGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..GTCCAAATCGACTA-----CAT---------CCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
..........CGACTA-----CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
..............TA-----CAT---------CCAGGACCTGAGCTCGCTCTC...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
........ATCGACTA-----CAT---------CCAGGACCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droBip1
ATGTCCAAATCGACTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAAACCC--TTAAATTTTTTAACCGCAAACCGACTTGTTTTTAACTATCTTTT---GATC----TCAAGCTAAATAAAAAATACAAAATA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAA--------------------ATGAA----------------------------------AACGAAGGAAAAGT--TAGAGGAAAGCSizeHit CountTotal NormTotal
No Reads
droFic1
ATTTTAAGATCGAAGA-----TATGATAACTGATTTGTATGTAAATTTTCTGTGCCGTAACA--GTATGATGATGATGAT---------GATGGTGGTGGTG------ATGATGAT---GATGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GASizeHit CountTotal NormTotal
No Reads
droEle1
AGCCA------------------A---------CCCACTCCTCACCTTACTTCCCCAATACACACTGC---------------------------------AAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATAATAAAAAGAATAAAA---------------AAAAAAAAG--AATAAAA--------------------------------------------AAA--AAAGAATAAAATSizeHit CountTotal NormTotal
No Reads
droRho1
ATGTGAACATCGAATA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
AAATCGGTAATAAAAA-----A-----------------------------------------------------------TAAAATAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAT----------AAATAAAATAAAAAAAAA--------------------------------------------TAA--AATAAAAAAAAASizeHit CountTotal NormTotal
No Reads
droTak1
ATGCCCCTGCTGA------------------------------------------------------------------------------------TGATGACAATGA------T---GATGATG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
TCGCTAAAAAAAAAA------------------------------------------------------------------TAACAACAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACAAA--------------------TCGAA--------------------------------------------TAA--CAAAAGAAATACSizeHit CountTotal NormTotal
No Reads
dm3
TTTTTATCGCCGC---------------------GAGGACAGATGCCCAGAATGACGATTGGTA---------------------------------TGATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------ACCATTCCGG-------------------------AATGCTGGA------TG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................A---------------------------------TGATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................21111.271400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000
.................................................................................................TGATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................21101.10110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000001204100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TGCCCAGAATGACGATTGGTA---------------------------------TGATGA..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................TGATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................20120.92110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020100000000002100000000000000000000000000000000010000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................TGATGATAATGA------T---GATGAT....................................................................................................................................................................................................................................................................................................................................................19140.2130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TGATGATAATGA------T---GATGA.....................................................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------A.................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................A---------------------------------TGATGATAATGA------T---GATGA.....................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................ATGATAATGA------T---GATGATG-------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------TCGTCCCGTTC--------CGTC-TCATCTCGGAATTCGAAT------TCGAAATTGGAAGCGGACCGGTATCGGTTAAGAAATCGGCATCGCATTTGGAGCCCGTT-TCACCAAATCCCC------AA-AGACGTTGGAATTCCGACCAGGGA--------------------ATAGGAATACGAAATGCGTGTGCGCCA----------------------AATT--TTCTTCAAAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................AGGACCTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2415.00530200000000000000
...................................AGGACCTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2013.00330000000000000000
......................AT---------CCAGGACCTGAGCTCGCTCTCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300300000000000000
......ACATCGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300300000000000000
......................AT---------CCAGGACCTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2813.00310200000000000000
..................................CAGGACCTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2113.00311100000000000000
..........CGAGTA-----CAT---------CCAGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................1813.00300300000000000000
....GAACATCGAGTA-----CAT---------CCAGGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300000000000000
..........CGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200000000000000
...............A-----CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
.......................T---------CCAGGACCTGAGCTCGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
........ATCGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
.....................CAT---------CCAGGACCTGAGCTCGCTCTCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2812.00200200000000000000
....GAACATCGAGTA-----CAT---------CCAGGACCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200200000000000000
.....................CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200200000000000000
..................................CAGGACCTGAGCTCGCTCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200200000000000000
...............................................CGCTCTCCCGCTTGGAGGAC..............................................................................................................................................................................................................................................................................................................................................................................................................2021.50300300000000000000
.............GTA-----CAT---------CCAGGACCTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
......................AT---------CCAGGACCTGAGCTCGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..........................................GAGCTCGCTCTCCCGCTTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
.........TCGAGTA-----CAT---------CCAGGACCTGAGCTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
.......................T---------CCAGGACCTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
.................................CCAGGACCTGAGCTCGCTCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000000000
.....................CAT---------CCAGGACCTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..........CGAGTA-----CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
..................................CAGGACCTGAGCTCGCTCT............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
......................AT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...................................AGGACCTGAGCTCGCTCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........TCGAGTA-----CAT---------CCAGGACCTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
..................................CAGGACCTGAGCTCGCTCTCCCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
............AGTA-----CAT---------CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
.......CATCGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
...............A-----CAT---------CCAGGACCTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................................................................................................................................................................................................................................................................................................GTTAAGAAATCGGCATCGCATTTGG.............................................................................................................................................2511.00100100000000000000
........ATCGAGTA-----CAT---------CCAGGACCTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.........TCGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
...................................AGGACCTGAGCTCGCTCTCCCGCG......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...................................................................................................................................................................................................................................................................................GAAATTGGAAGCGGA...............................................................................................................................................................................1520.50100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AATACGAAATGCGTT..............................................15200.05100000000001000000
droSec2
AAGAA-----GGAAAA-----CAA---------CAAGGC--------------------------------------------------------GACGATG------TTGTTGAT---GATGATGA------------------------------------------------------ATTTGCCCTGATTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGACACAAAA--------------------ACAAA--------------------------------------------CAA--AA-AAAAAAAAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-----------T---C-----------------------------------------------------------------------------------------------------------GTCCCGT--------CCCGTCT------CGGAAT-CGAGATCGCAATCGAAATTGGATGCGGATTGG-------------ATCGGCATCGGATTA-GAGCCCGAAATCCCAAAATCCCC------AAAAGACGTTGGAATTTCGACCAGGGA--------------------ATAGGAATACGAAATGCGTGTGCGCCA----------------------AATT--TCTTCAAAATCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............GTA-----CAT---------CCAGGACCTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200100010000
...........................................AGCTCGCTCTCCCGCTTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.....AACATCGAGTA-----CAT---------CCAGGACCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
.................................CCAGGACCTGAGCTCGCTCTCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.....................CAT---------CCAGGACCTGAGCTC.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000
.......................T---------CCAGGACCTGAGCTCGCTCTCCCGCT......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
.............GTA-----CAT---------CCAGGACCTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
droEre2
ATGTGAACATCGAGTA-----CAT---------CCAGGACCTGAGCTCGCTCTCCCGCTTGGAGGTAA---------------------------------GGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............GTA-----CAT---------CCAGGACCTGAGCTCGCTCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................2812.0021000100
.............GTA-----CAT---------CCAGGACCTGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0021000010
.............GTA-----CAT---------CCAGGACCTGAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000110
.....................................GACCTGAGCTCGCTCTCCCGCTTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001000
...........................................AGCTCGCTCTCCCGCTTGG...................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.....................................GACCTGAGCTCGCTCTCCCGCTTGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.................................CCAGGACCTGAGCTCGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
..........CGAGTA-----CAT---------CCAGGACCTG......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010

Generated: 05/17/2015 at 11:36 PM