ID:

dwi_616

 Coordinate:

scf2_1100000004511:6357390-6357540 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.4 -23.1 -23.1

Flybase annnotation

CDS [Dwil\GK16786-cds]; exon [dwil_GLEANR_17141:3]; intron [Dwil\GK16786-in]

Repeatable elements

NameClassFamilyStrand
(GA)nSimple_repeatSimple_repeat+
Helitron1_DmojRCHelitron+
MINIME_DNUnknownUnknown+
mature
  1. dwi_616  scf2_1100000004511:6357426-6357446 -
  2. scf2_1100000004511:8035253-8035273 -
  3. scf2_1100000004511:8250933-8250953 -
  4. scf2_1100000004511:9385103-9385123 -
  5. scf2_1100000004516:2109274-2109294 -
  6. scf2_1100000004521:331852-331872 -
  7. scf2_1100000004558:2179484-2179504 -
  8. scf2_1100000004585:7134046-7134066 -
  9. scf2_1100000004729:973790-973810 -
  10. scf2_1100000004768:55702-55722 -
  11. scf2_1100000004768:1735085-1735105 +
  12. scf2_1100000004837:1362760-1362780 +
  13. scf2_1100000004884:1139537-1139557 -
  14. scf2_1100000004943:10717668-10717688 -
  15. scf2_1100000004902:1785117-1785137 -
  16. scf2_1100000004902:7863080-7863100 -
  17. scf2_1100000004902:9420028-9420048 -
  18. scf2_1100000004909:6298181-6298201 -
  19. scf2_1100000004909:6562996-6563016 -
  20. scf2_1100000004909:11576565-11576585 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GACAGACTAGGCAGACAAAGAGACAAAAAGACAGACGGACAGACAGACAAGCAGGCAGACACAAAGCTAATACATTTATTTTTGTTCATAAGTCTGTGGGGTAAACTTGTATGTGAAATGAAATCTGTGTTCTCTGTGTTCTGTCTCTCCCTCTCTCTTTCTCTCTCTCTCTCTTGCTATTTCTCTCTCTCATTTAAACAGAGTCGTATACAATACACCAAAATCAATTCAAGCCAGCGTTACGATACTTG
**************************************************..(((((((((((.((..((((((...(((((..((((((.....((.......)).....))))))..))))).)))))))).)))).))))))).......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
 V119
head
 V118
embryo
.........................................................................................AAGTCGGTGGGGTAACCT................................................................................................................................................ 18 2 4 35.25 141 138 2 1 0 0
.........................................................................................AAGTCGGTGGGGTAACCTT............................................................................................................................................... 19 2 2 35.00 70 47 23 0 0 0
........................................................................................AAAGTCGGTGGGGTAACCTT............................................................................................................................................... 20 3 6 23.83 143 64 76 3 0 0
..........................................................................................AGTCGGTGGGGTAACCTT............................................................................................................................................... 18 2 4 19.50 78 74 4 0 0 0
........................................................................................AAAGTCGGTGGGGTAACCT................................................................................................................................................ 19 3 18 16.94 305 214 74 12 5 0
.........................................................................................AAGTCGGTGGGGTAACCTTTTA............................................................................................................................................ 22 3 1 11.00 11 6 5 0 0 0
..........................................................................................AGTCGGTGGGGTAACCTTTTA............................................................................................................................................ 21 3 3 8.67 26 21 5 0 0 0
...........................................................................................GTCGGTGGGGTAACCTTTTA............................................................................................................................................ 20 3 4 4.00 16 16 0 0 0 0
.........................................................................................AAGTCGGTGGGGTAACCTTTT............................................................................................................................................. 21 3 2 3.00 6 5 1 0 0 0
.........................................................................................AAGTCGGTGGGGTAACCTTT.............................................................................................................................................. 20 3 7 1.57 11 10 1 0 0 0
...........................................................................................GTCGGTGGGGTAACCTTTT............................................................................................................................................. 19 3 20 0.80 16 15 0 1 0 0
..........................................................................................AGTCGGTGGGGTAACCTTTT............................................................................................................................................. 20 3 8 0.50 4 4 0 0 0 0
.............................................................................................................................................................................................................................AATCAATCCAAGCCATGGT........... 19 3 20 0.35 7 0 0 0 0 7
..........................................................................................AGTCGGTGGGGTAATCTT............................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
...............................................................................................GTGGGGTAACCTTTTATG.......................................................................................................................................... 18 2 5 0.20 1 0 0 0 1 0
.........................................................................................AAGCCGGTGGGGTAACCTT............................................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0
...............................................CACGCAGGCAGACACAACG......................................................................................................................................................................................... 19 2 9 0.11 1 1 0 0 0 0
.............................GACAGACGGACAGACAGACA.......................................................................................................................................................................................................... 20 0 20 0.10 2 0 2 0 0 0
.........................................................................................CAGTCGGTGGGGTAACCTT............................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0
.........................................................................................AAGTCGGTGGGATAACCTT............................................................................................................................................... 19 3 18 0.06 1 1 0 0 0 0
....................................................................AATACATTTATGTTTGATC.................................................................................................................................................................... 19 2 19 0.05 1 0 0 1 0 0
................................................................................................................................................CTCTCCCTCTCTCTTTCTCTC...................................................................................... 21 0 20 0.05 1 1 0 0 0 0
....................................GGACAGAAAGACCAGCCGG.................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
.............................GACAGACGGACAGACAGA............................................................................................................................................................................................................ 18 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CTGTCTGATCCGTCTGTTTCTCTGTTTTTCTGTCTGCCTGTCTGTCTGTTCGTCCGTCTGTGTTTCGATTATGTAAATAAAAACAAGTATTCAGACACCCCATTTGAACATACACTTTACTTTAGACACAAGAGACACAAGACAGAGAGGGAGAGAGAAAGAGAGAGAGAGAGAACGATAAAGAGAGAGAGTAAATTTGTCTCAGCATATGTTATGTGGTTTTAGTTAAGTTCGGTCGCAATGCTATGAAC
**************************************************..(((((((((((.((..((((((...(((((..((((((.....((.......)).....))))))..))))).)))))))).)))).))))))).......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body
...........................................GACTGGTCGTCCGTCTGTG............................................................................................................................................................................................. 19 2 4 0.50 2 2 0
............................................ACTGGTCGTCCGTCTGTG............................................................................................................................................................................................. 18 2 8 0.25 2 2 0
...........................................................................................................................................................................................................................TTTTAGTTAAGGTCGGTCT............. 19 2 13 0.08 1 0 1
.........................................CGGACTGGTCGTCCGTCTGTG............................................................................................................................................................................................. 21 3 15 0.07 1 1 0
.......................................................................................................................................................AGAGAGAAAGAGAGAGAGAGAGA............................................................................. 23 0 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:6357340-6357590 - dwi_616 GACAGACTA------GGCAGACAAAGAGACAAAAAGACAGACGGACAGACAGACAAGCAGGCAGACAC-----------------------------------------------------------------------------------------------AAAGCTAATACATTTATTT-----TTGTT----------------------------------------CATAAG---TCTGTGGGGTA------------------------------AAC-TTGTA-------------------------------T-GTGAAATGAAATCTGTGTTCTCTGTGTTCTGTCTCTCCCT--------------------------------------------------------CTCTCTTTCTCTCTCT-----------------CTCTCTTGCTA---------------TTTCTCTCTCT----CATTT------------------------AAACAGAGTCGTATACA-----ATACACCAAAATCAATTCAAGCCAGCGTTACGATACTTG
droVir3 scaffold_13049:9068682-9068919 + ACAAA-TTC------A-ACGACTCACAGAGAGGCACACT--------CAAAGC-----------------------------------------------------------------------------------------------CCGGTTAGTGCGAC-AATAATGACGCCTTTATTT-----GGCATCAT----TTTT-TATACAAATAT--TAAATAA------------------------------------------ATGTGACGGCAACGAAA-CTTTTCGCCAAGTCAAATAAAA-------------ATAA-G---------------------------------------TGTATGTATATATAT--------------------------------A--------TTAT--------TT--T-----------------CCT-----------------------TTGTATC--CCTG-----T------------------------CAACAGAATTGTCTATA-----ACACACCGAAATCCATTCAGGCGAGCGTCACAATACTTG
droMoj3 scaffold_5985:9337-9557 + GACGCGTTCATACATA-CGGACAGACGGACGGACGGACAGACGGACAGACGGACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAA-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACTTT-GT-GGG*TA---------------------------------------G---TTGCCGCTCTCCCTTTCT---CTCTCTCTCTCTCT------------------------CT--CTCTCCCTCTATTCTAACTA-----------------------TTTCTGTCTC-------------------------------------CT-GACTCTCTCTA-----TCGCAGCGAAATCAATTCGA-------------------
droGri2 scaffold_15110:4842207-4842469 + ACAC-ACTA------A-CACACACACACACACGCACACC--------CATCGA-----------------------------------------------------------------------------------------------CCAGCTGGTGCAAGAATAACAAACGCATTTATTTACTTTGGGCTCAT----TTT-TAATGCAAACAT--TAAATAA------------------------------------------AAGTGACGGC-----AAACTTTTTCTCTAATCAGATCAAAAATATA-------------------------------------------------------------------------------TAT--------------ATATATAT-------------------------------------ATGTATGTGTATTTGTATGTATTTTCTTTGTCTA--CTTG-----A--------------AAAAAAAAACACATAGAATTGTCTACA-----ATACACCGAAATCTATTCAGGCGAGCGTTACGATACTTG
dp5 XR_group6:7705214-7705437 - GACACAACC------A-CAAAGG-ACA--CGGCA---CG--------G----C------------ACGGC------------------------------------------------------------------------------ACGGAACGGACA---CGGACTAATGCGTTTATTT-----TTAGTAATTCGTTTCTTCCTACAATCCG--G--------------------------------------------CCATAAGTCAGGGA-----CAAC-TTTTATCTAATCACATCTGTGGCGTA-------------------------------------------------------------------------------TCG--------------CTCTCTGT-------------------------------------CTCTCTGGCTGTCTGT-------------------CG----CCTTT---------------------------CAGAATCGTCTACA-----ATACACCGAAATCCATTCAGGCAAGCGTTACGATACTTG
droPer2 scaffold_27:751390-751610 + GACACAGCC------A-CAAAGG-ACTGTCCTCGGCACT--------GACA-------------------------------------------------------------------------------------------------------GGGACA---CGCACTAATGCGTTTATTT-----TTAGTAATTCGTTTCTTCCTACAATCCG--G--------------------------------------------CCATAAGTCAGGGA-----CAAC-TTTTATCTAATCACATCTGTGGCGTA-------------------------------------------------------------------------------TCG--------------CTCTCTGT-------------------------------------CTCTCTGGCTGTCTGT-------------------CG----CCTTT------------------------C--AAGAATCGTATACA-----ATACACCGAAATCCATTCAGGCAAGCGTTACGATACTTG
droAna3 scaffold_13337:14866648-14866867 + AACAAAAAA------G--AATCGGATAGACTAAAATAAAAATAATAAAGTTGAGGC--------------------------------------------------------------------------------------------ACGCGTACGCCA---AGGAATAATGCGTTTATTT-----TTAGTAAT----TTCT-----------------------------CAAGAA---TATATGGGCTAGGATAGCCAGAAATATGCCAGTGC-----AAAC-TTTACCCTAATAAAATCTCTTCCATC-------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CACTTAGAGTCGTCTACA-----ATACACCGAAATCCATTCAGGCCAGCGTTACGATACTCG
droBip1 scf7180000395155:797128-797358 + AGAACAAAC------A-AA--CAAAAAAACGATGG-----------------A------------AGCGGATAGAATAAA-------------------------------------------------GTGA-AATAAAGTTGGCACACGCTTACGCCA---AGGAATAATGCGTTTATTT-----TTAGTAAT----TTCT-----------------------------CATGGC---TATATGGACTAG-ATGGCCCGAGAAAAGTCGGTGA-----AAAC-TTTACCCTAATCAAATCTCTTCCATC-------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CACTTAGAGTCGTCTACA-----ATACACCGAAATCCATTCAGGCCAGCGTTACGATACTCG
droKik1 scf7180000302696:392223-392385 - CAGATATGA------A-AA--CAAAAAGCCAGCCGCG--------TAGATAAAT-----------------------------------------------------------------------------------------------------TAGCA---AGCATTAATTAAT-TGCTG-----AATGTAAGCCGTTAGCTGTAGCAAACCCCAC--------------------------------------------TCTTTTGACAGATT-----TATG-CATTTTCCAATGTCTCCTGTGCGC---------------------------------------------------------------------------CCC---TCT--------------CTCTCTGT-------------------------------------CTCTCTTGCCA------------------------------------------------------------------------------------------------------------------TGCC-T
droFic1 scf7180000454077:3167-3323 + AGGCTGCCC------A-AGGATGAAATGATTTATGGACG--------AGCAAATAATT---TGGACAC-----------------------------------------------------------------------------------------------AAAGGTAACAAAT------------------------------------------------------------------------------------------------------------ACTTTGATAATCATAAATCACA-------------ACAACA---------------------------------------CGCTCGCTTTTGCCCCCCAT-----------TTCCTCTCTCT--CTCTCTCT----------------CTCTCT--------CTT-------------------T--GCCTT---TTCCTCTCGCT---------------------------------------------------------------------------------------------C
droEle1 scf7180000491280:104961-105084 + TCTGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTGCTTTTG--CG--------TTGC--------CTTTGC--------TTT-TGCCTCTGCTGCTA-------------------TCGCGTCTTCCACTTT------------------------AAACTCAAAATTATAAA-----AAGCAACAAAG--CTGTCAACCGAACGTTTCAGT--TTG
droRho1 scf7180000779986:95647-95829 - AACACACGC------A-CATGCACAC--ACACACACACATACAGACACACACAC--------ATGCAAGACAAAATAAA-------------------CAAGGATGCAAACGCATGGGAATTGAAATTCGTGT-ATGGCAA---------------------------------------TT-----AAAATATCTGCTTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCTCTT-----------CCCTTCTCT----CTCTCTCTCTTT------------CT--CT--------CT---------------T----T--CTCTTTTCTTTCTCTCTCT---------------------------------------------------------------------------------------------C
droBia1 scf7180000301549:20524-20664 + GAGAGACTA------G-TTTGCGTAGAAACGGACAGACAGACGGACGGACAGAC--------GGACATGGCTAGATCGACTCGTCTAGTGGCGCTGATCAAGAATACGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGCTTT-AT-GGGGTAGGAAATCTTAATTTTCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGG------------------T
droTak1 scf7180000411195:4346-4596 + GACAGACAG------A-CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAG-----------------------------------------------------------------------------------------------AA--TTAA-------------------ATAATTAACT------------AAT--TAAATAAATTAAGGACTTAAGGTATCTTTGGGTCA----------------------------------------------------------AAAAAGCATT-AT-AGAAGA---AAATATTTTTATTTAATTTATGTGTCTTTCA--------------------------------------------------------AACTTT------GAATGC--------TTC-------------------C--ACCTT---CTTTTGTGGTT--A-----CGTTAGATTA--------CATTTTCAAAAAGGATCATACAGA-----AGAGACGTGTATCTATTTAA-------------------
droEug1 scf7180000409067:9938-10052 - GACAGACAG------A-CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAGAG-----------------------------------------------------------------------------------------------ACAAATTACTTAACTATTT-----TTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------AATTTC--------GT-----CTCTTTGGTG-------------------ATCTTGCA---------------------------------------------------------------------------------------------T
dm3 chrUextra:2567305-2567382 + TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTCTCTCTCT--CTCTCT----------------CTCTCT--------CTC-------------------T--CTCTC---TCTCTCTCTCT---------------------------------------------------------------------------------------------C
droSim2 4:951478-951651 + ATATA-TAT------A-T------------------------------------------------------------------------------------------------------------------------------------GTTTGTTCTT---AAGAAAACTGTGTATATNN-----NNNTTCGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTTTTTTTT------TAT-------TAAGAACAAAA-------CATAAATTTAAGTCATGCGCA----GGAAGATTTTCTCTACGTCGTTAATGCTCAATTTA
droSec2 scaffold_4:1605111-1605196 - CCGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCT------------CT--CC--------CT---------------GTCTCT-----------CCCTGTCTCGCTA-----G--------------GGAA-------TGCGAATTCAATTGCG-----ACACACTAAAACGCACTCAA-------------------
droYak3 X:21457797-21457920 + AAAATT-AC---------GGACAGACAGACGGACGGACG--------GAC------------AGACATGGCCAGAATGACTGGGCTAGTGATCCTGATCAAAAA-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATCTTT-AT-AGGAACTTAACGCTTCATTCTACC------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTCT--------------------------------------------------------------------------------------------CT
droEre2 scaffold_4929:1383947-1384056 + TCTCTC-TC------T------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCT--CTCTCT----------------CTCTCT--------CTC-TCTCTCT-----------------------CTCTCTCTCC------------------------------------CTGGCTCTTCAACA-----ATAATTCGAGAGAGCCTGGAGCCAGCACAACAAAATT--

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GACAGACTA------GGCAGACAAAGAGACAAAAAGACAGACGGACAGACAGACAAGCAGGCAGACAC-----------------------------------------------------------------------------------------------AAAGCTAATACATTTATTT-----TTGTT----------------------------------------CATAAG---TCTGTGGGGTA------------------------------AAC-TTGTA-------------------------------T-GTGAAATGAAATCTGTGTTCTCTGTGTTCTGTCTCTCCCT--------------------------------------------------------CTCTCTTTCTCTCTCT-----------------CTCTCTTGCTA---------------TTTCTCTCTCT----CATTT------------------------AAACAGAGTCGTATACA-----ATACACCAAAATCAATTCAAGCCAGCGTTACGATACTTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................GACAGACGGACAGACAGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10200200
....................................................................................................................................................................................................................................................................................................................................................................CTCTCCCT--------------------------------------------------------CTCTCTTTCTCTC.......................................................................................................................................................21200.05101000
...................................GACAGACGGACAGACAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05110000
droVir3
ACAAA-TTC------A-ACGACTCACAGAGAGGCACACT--------CAAAGC-----------------------------------------------------------------------------------------------CCGGTTAGTGCGAC-AATAATGACGCCTTTATTT-----GGCATCAT----TTTT-TATACAAATAT--TAAATAA------------------------------------------ATGTGACGGCAACGAAA-CTTTTCGCCAAGTCAAATAAAA-------------ATAA-G---------------------------------------TGTATGTATATATAT--------------------------------A--------TTAT--------TT--T-----------------CCT-----------------------TTGTATC--CCTG-----T------------------------CAACAGAATTGTCTATA-----ACACACCGAAATCCATTCAGGCGAGCGTCACAATACTTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GACGCGTTCATACATA-CGGACAGACGGACGGACGGACAGACGGACAGACGGACAGACAGACGGACAGGGCCAAATCAACTCAGCTCGTCGCCCTGATCAAGAA-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATATATACTTT-GT-GGG*TA---------------------------------------G---TTGCCGCTCTCCCTTTCT---CTCTCTCTCTCTCT------------------------CT--CTCTCCCTCTATTCTAACTA-----------------------TTTCTGTCTC-------------------------------------CT-GACTCTCTCTA-----TCGCAGCGAAATCAATTCGA-------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................AATCAACTCAGCTCGTCGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.05212100000
.........................CGGACGGACGGACAGACGGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000020
.............................................................................AACTCAGCTCGTCGCCCTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
...............A-CGGACAGACGGACGGACGGACAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
..CGCGTTCATACATA-CGGACAGACGGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000001
..............TA-CGGACAGACGGACGGACGGACAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051000010
.....................CAGACGGACGGACGGACAGACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000010
.ACGCGTTCATACATA-CGGAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...................GACAGACGGACGGACGGACAGACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051100000
.............................................................CGGACAGGGCCAAATCAACTC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droGri2
ACAC-ACTA------A-CACACACACACACACGCACACC--------CATCGA-----------------------------------------------------------------------------------------------CCAGCTGGTGCAAGAATAACAAACGCATTTATTTACTTTGGGCTCAT----TTT-TAATGCAAACAT--TAAATAA------------------------------------------AAGTGACGGC-----AAACTTTTTCTCTAATCAGATCAAAAATATA-------------------------------------------------------------------------------TAT--------------ATATATAT-------------------------------------ATGTATGTGTATTTGTATGTATTTTCTTTGTCTA--CTTG-----A--------------AAAAAAAAACACATAGAATTGTCTACA-----ATACACCGAAATCTATTCAGGCGAGCGTTACGATACTTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
GACACAACC------A-CAAAGG-ACA--CGGCA---CG--------G----C------------ACGGC------------------------------------------------------------------------------ACGGAACGGACA---CGGACTAATGCGTTTATTT-----TTAGTAATTCGTTTCTTCCTACAATCCG--G--------------------------------------------CCATAAGTCAGGGA-----CAAC-TTTTATCTAATCACATCTGTGGCGTA-------------------------------------------------------------------------------TCG--------------CTCTCTGT-------------------------------------CTCTCTGGCTGTCTGT-------------------CG----CCTTT---------------------------CAGAATCGTCTACA-----ATACACCGAAATCCATTCAGGCAAGCGTTACGATACTTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GACACAGCC------A-CAAAGG-ACTGTCCTCGGCACT--------GACA-------------------------------------------------------------------------------------------------------GGGACA---CGCACTAATGCGTTTATTT-----TTAGTAATTCGTTTCTTCCTACAATCCG--G--------------------------------------------CCATAAGTCAGGGA-----CAAC-TTTTATCTAATCACATCTGTGGCGTA-------------------------------------------------------------------------------TCG--------------CTCTCTGT-------------------------------------CTCTCTGGCTGTCTGT-------------------CG----CCTTT------------------------C--AAGAATCGTATACA-----ATACACCGAAATCCATTCAGGCAAGCGTTACGATACTTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AACAAAAAA------G--AATCGGATAGACTAAAATAAAAATAATAAAGTTGAGGC--------------------------------------------------------------------------------------------ACGCGTACGCCA---AGGAATAATGCGTTTATTT-----TTAGTAAT----TTCT-----------------------------CAAGAA---TATATGGGCTAGGATAGCCAGAAATATGCCAGTGC-----AAAC-TTTACCCTAATAAAATCTCTTCCATC-------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CACTTAGAGTCGTCTACA-----ATACACCGAAATCCATTCAGGCCAGCGTTACGATACTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AGAACAAAC------A-AA--CAAAAAAACGATGG-----------------A------------AGCGGATAGAATAAA-------------------------------------------------GTGA-AATAAAGTTGGCACACGCTTACGCCA---AGGAATAATGCGTTTATTT-----TTAGTAAT----TTCT-----------------------------CATGGC---TATATGGACTAG-ATGGCCCGAGAAAAGTCGGTGA-----AAAC-TTTACCCTAATCAAATCTCTTCCATC-------------------------------------------------------------------------------T----------------------------------------------------------------------------------------------------------------------------------CACTTAGAGTCGTCTACA-----ATACACCGAAATCCATTCAGGCCAGCGTTACGATACTCGSizeHit CountTotal NormTotal
No Reads
droKik1
CAGATATGA------A-AA--CAAAAAGCCAGCCGCG--------TAGATAAAT-----------------------------------------------------------------------------------------------------TAGCA---AGCATTAATTAAT-TGCTG-----AATGTAAGCCGTTAGCTGTAGCAAACCCCAC--------------------------------------------TCTTTTGACAGATT-----TATG-CATTTTCCAATGTCTCCTGTGCGC---------------------------------------------------------------------------CCC---TCT--------------CTCTCTGT-------------------------------------CTCTCTTGCCA------------------------------------------------------------------------------------------------------------------TGCC-TSizeHit CountTotal NormTotal
No Reads
droFic1
AGGCTGCCC------A-AGGATGAAATGATTTATGGACG--------AGCAAATAATT---TGGACAC-----------------------------------------------------------------------------------------------AAAGGTAACAAAT------------------------------------------------------------------------------------------------------------ACTTTGATAATCATAAATCACA-------------ACAACA---------------------------------------CGCTCGCTTTTGCCCCCCAT-----------TTCCTCTCTCT--CTCTCTCT----------------CTCTCT--------CTT-------------------T--GCCTT---TTCCTCTCGCT---------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droEle1
TCTGTGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTTTTGCTTTTG--CG--------TTGC--------CTTTGC--------TTT-TGCCTCTGCTGCTA-------------------TCGCGTCTTCCACTTT------------------------AAACTCAAAATTATAAA-----AAGCAACAAAG--CTGTCAACCGAACGTTTCAGT--TTGSizeHit CountTotal NormTotal
No Reads
droRho1
AACACACGC------A-CATGCACAC--ACACACACACATACAGACACACACAC--------ATGCAAGACAAAATAAA-------------------CAAGGATGCAAACGCATGGGAATTGAAATTCGTGT-ATGGCAA---------------------------------------TT-----AAAATATCTGCTTTCTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTCTTCTCTT-----------CCCTTCTCT----CTCTCTCTCTTT------------CT--CT--------CT---------------T----T--CTCTTTTCTTTCTCTCTCT---------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotal
No Reads
droBia1
GAGAGACTA------G-TTTGCGTAGAAACGGACAGACAGACGGACGGACAGAC--------GGACATGGCTAGATCGACTCGTCTAGTGGCGCTGATCAAGAATACGAGTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATATGCTTT-AT-GGGGTAGGAAATCTTAATTTTCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTCGG------------------TSizeHit CountTotal NormTotal
No Reads
droTak1
GACAGACAG------A-CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAG-----------------------------------------------------------------------------------------------AA--TTAA-------------------ATAATTAACT------------AAT--TAAATAAATTAAGGACTTAAGGTATCTTTGGGTCA----------------------------------------------------------AAAAAGCATT-AT-AGAAGA---AAATATTTTTATTTAATTTATGTGTCTTTCA--------------------------------------------------------AACTTT------GAATGC--------TTC-------------------C--ACCTT---CTTTTGTGGTT--A-----CGTTAGATTA--------CATTTTCAAAAAGGATCATACAGA-----AGAGACGTGTATCTATTTAA-------------------SizeHit CountTotal NormTotal
No Reads
droEug1
GACAGACAG------A-CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAGAG-----------------------------------------------------------------------------------------------ACAAATTACTTAACTATTT-----TTGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT----------------AATTTC--------GT-----CTCTTTGGTG-------------------ATCTTGCA---------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotal
No Reads
dm3
TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTCTCTCTCT--CTCTCT----------------CTCTCT--------CTC-------------------T--CTCTC---TCTCTCTCTCT---------------------------------------------------------------------------------------------CSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.....................................................................................................................................................................................................................................................................................................................................................................................CTCGCTCTC--------T---CTCTCTCTCTC...................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
....................................................................................................................................................................................TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCT...........................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT--CTCTCT----------------CTCTCT--------CTC-------------------....................................................................................................................20200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTCTCT....................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCT--CTCTCT----------------CTCTCT--------CTC-------------------T--.................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------..................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTC................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCT...........................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCT--------CTC-------------------T--CTCTC---TCTCTCTC.................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTC............................................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCT--CTCTCT----------------CTCT....................................................................................................................................................21200.0510000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCG...............................................................................................................................................................................................................25200.0510000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................AGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTC............................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCT----------------CTCTCT--------CTC-------------------T--CTCTC---.........................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCT--CTCTCT----------------CTCTCT--------CTC-------------------....................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................C-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---C.............................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................A---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---C.............................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCT--CTCTCT----------------CTCTCT--------CTC-------------------T--C................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------..................................................................................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT----------------CTCTCT--------CTC-------------------T--CTCT.............................................................................................................19200.0510000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------CTCTCT--------CTC-------------------T--CTCTC---TCTC.....................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CGCTCTC--------T---CTCTCTCTCTCTCT--CT............................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCT...........................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................CTC--------T---CTCTCTCTCTCTCT--CTCTCT----------------CTCTCT--------..........................................................................................................................................30200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTCTCTCTCT--CTCTCT----------------CTC.....................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---..............................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCT..........................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCT--------CTC-------------------T--CTCTC---TCTCTCTCTCT---------------------------------------------------------------------------------------------C26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTCTCTCTCT--CTCTCT----------------C.......................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTC............................................................................................................................................................................................................28200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T--CTCTCT----------------CTCTCT--------CTC-------------------T--CTCTC---TCTC.....................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTC.........................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TGA-----------------------------------------------------------------------------------------------------------------------------------GAGGCAA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C..................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CT............................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTC.......................................................................................................................................................................................20200.0510000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................TATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTCTCT....................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................C-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTC...........................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................GCTCTC--------T---CTCTCTCTCTCTCT--C.............................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................CT--CTCTCT----------------CTCTCT--------CTC-------------------T--CTCTC---T........................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TCGCTCTC--------T---CTCTCTCTCTCTCT--..............................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CT............................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CGCTCTC--------T---CTCTCTCTCTC...................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................ATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCTC--------T---CTCTCTCTA.....................................................................................................................................................................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AA---------------------------------------TC-----TAAATATCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGCTCT...........................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCT----------------CTCTCT--------CTC-------------------T--CTCTC---TCTCTCTC.................................................................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
ATATA-TAT------A-T------------------------------------------------------------------------------------------------------------------------------------GTTTGTTCTT---AAGAAAACTGTGTATATNN-----NNNTTCGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTTTTTTTT------TAT-------TAAGAACAAAA-------CATAAATTTAAGTCATGCGCA----GGAAGATTTTCTCTACGTCGTTAATGCTCAATTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................T---TTTTTTTTTTTTTT--TTTTTT----------------T.......................................................................................................................................................22200.35700700000000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTTTTT--------T---TTTTTTTTTTTT..................................................................................................................................................................................19200.15300000000030000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTTT--------T---TTTTTTTTTTTT..................................................................................................................................................................................18200.15300030000000000000
................................................................................................................................................................................................CGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTTTTTTTT--..............................................................................................................................................................................28100.10100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................TTTTTTT--------T---TTTTTTTTTTTTTT--..............................................................................................................................................................................22200.10200000000000020000
...............................................................................................................................................................................................TCGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTTT.....................................................................................................................................................................................24170.06100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TT...............................................................................................................21200.05101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--.................................................................................................................21200.05101000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--T................................................................................................................21200.05101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................T---TTTTTTTTTTTTTT--TTTTTT----------------TTTTTT--------TT........................................................................................................................................29200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................T--------T---TTTTTTTTTTTTTT--TTTTTT----------------TTTTTT--------T.........................................................................................................................................29200.05100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTT..............................................................................................................21200.05101000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT----------------TTTTTT--------TTT-------------------T--T................................................................................................................17200.05100000000010000000
..................................................................................................................................................................................................T----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTTTTTT..................................................................................................................................................................................24200.05110000000000000000
...............................................................................................................................................................................................TCGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTTTTTT......................................................................................................................................................................................23200.05100000010000000000
........................................................................................................................................................................................................................................................................................................................................................................................TTTTTT--------T---TTTTTTTTTTTTTT--TTTTT.........................................................................................................................................................................26200.05101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTT.....................................................................................................36200.05100000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTT......................................................................................................36200.05100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................T---TTTTTTTTTTTTTT--TTTTTT----------------TT......................................................................................................................................................23200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TT.......................................................................................................36200.05100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTTTT..................................................................................................36200.05100000000000100000
...............................................................................................................................................................................................TCGT----T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTT--------T---TTTT..........................................................................................................................................................................................19200.05100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTT--TTTTTT----------------TTTTTT--------TTT-------------------T--T................................................................................................................20200.05100000000000010000
............................................................................................................................................................................................................................................................................................................................................................................................TT--------T---TTTTTTTTTTTTTT--TTTTTT----------------TT......................................................................................................................................................25200.05100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTT....................................................................................................36200.05100000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTTT...................................................................................................36200.05100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTT----------------TTTTTT--------TTT-------------------T--TTT..............................................................................................................20200.05100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................T--TTTTTT----------------TTTTTT--------TTT-------------------T--.................................................................................................................17200.05100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTTTT----------------TTTTTT--------TTT-------------------....................................................................................................................17200.05100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTTT--TTTTTT----------------TTTTTT--------TTT-------------------T--TTTTT---TTTTTTTT.................................................................................................36200.05100000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTTTT----------------TTTTTT--------TTT-------------------T--TT...............................................................................................................20200.05100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTT----------------TTTTTT--------TTT-------------------T--TTTT.............................................................................................................20200.05100000000000010000
droSec2
CCGTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCT------------CT--CC--------CT---------------GTCTCT-----------CCCTGTCTCGCTA-----G--------------GGAA-------TGCGAATTCAATTGCG-----ACACACTAAAACGCACTCAA-------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
AAAATT-AC---------GGACAGACAGACGGACGGACG--------GAC------------AGACATGGCCAGAATGACTGGGCTAGTGATCCTGATCAAAAA-----------------------------T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATAAATCTTT-AT-AGGAACTTAACGCTTCATTCTACC------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTCT--------------------------------------------------------------------------------------------CTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....T-AC---------GGACAGACAGACGGACGGACG--------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100100000000
...................GACAGACAGACGGACGGACG--------GAC------------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100000010000
....................ACAGACAGACGGACGGACG--------GA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000000000
.....T-AC---------GGACAGACAGACGGACGGACG--------GAC------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05100100000000
droEre2
TCTCTC-TC------T------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCTCTCTCTCTCT--CTCTCT----------------CTCTCT--------CTC-TCTCTCT-----------------------CTCTCTCTCC------------------------------------CTGGCTCTTCAACA-----ATAATTCGAGAGAGCCTGGAGCCAGCACAACAAAATT--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--------CTC-TCTCTCT-----------------------CTCTCTCTCC------------------------------------..........................................................22200.0510100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGCCTGGAGCCAGCAC...........20200.0510010000

Generated: 05/17/2015 at 11:34 PM