ID:

dwi_61

 Coordinate:

scf2_1100000004511:3393251-3393314 -

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

antisense_to_intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-29.7 -29.2 -29.1

Flybase annnotation

Antisense to intron [Dwil\GK17265-in]

No Repeatable elements found

mature

  1. dwi_61  scf2_1100000004511:3393293-3393314 -
  2. dwi_63  scf2_1100000004511:3393866-3393887 -
  3. dwi_64  scf2_1100000004511:3394150-3394171 -
  4. dwi_65  scf2_1100000004511:3394508-3394529 -
star

  1. dwi_197  scf2_1100000004511:3392321-3392341 -
  2. dwi_196  scf2_1100000004511:3392537-3392557 -
  3. dwi_195  scf2_1100000004511:3392679-3392699 -
  4. dwi_61  scf2_1100000004511:3393253-3393273 -
  5. dwi_193  scf2_1100000004511:3393468-3393488 -
  6. dwi_63  scf2_1100000004511:3393826-3393846 -
  7. dwi_64  scf2_1100000004511:3394110-3394130 -
  8. dwi_65  scf2_1100000004511:3394468-3394488 -
  9. dwi_89  scf2_1100000004511:3394684-3394704 -
  10. dwi_190  scf2_1100000004511:3394900-3394920 -
  11. dwi_189  scf2_1100000004511:3395101-3395121 -

Sense Strand Reads

AAACTTAGTGATAGTCGCAGTATCATCAAAATCATACCTTATATGCAGAGTAGAGTTCAAGTAAAGGTAAAGAGCGTTATAAATCGAAATTTTCCTACTTTTACTTGATCTTATCTCGGCGTATAAAAAACTCTTAAGAGAAAAACTAAGTGATCGTCGCAGGA

***********************************...((((((((.(((..(((.(((((((((((((((((.((........))...))))..))))))))))))).)))..))).)))))))).************************************* 		Read size # Mismatch Hit Count Total Norm Total V117

male body		 V118

embryo

 M045

female body

 V119

head

 M020

head
..................................................TAGAGTTCAAGTAAAGGTAAAG............................................................................................ 22 0 4 81.00 324 291 17 10 6 0
..................................................TAGAGTTCAAGTAAAGGTAAAGA........................................................................................... 23 0 4 56.50 226 153 62 11 0 0
..................................................TAGAGTTCAAGTAAAGGTAAA............................................................................................. 21 0 5 13.40 67 58 3 5 1 0
...........................................................................................TTCCTACTTTTACTTGATCTT.................................................... 21 0 11 10.73 118 5 8 94 8 3
..................................................TAGAGTTCAAGTAAAGGTAAAGAG.......................................................................................... 24 0 4 8.25 33 26 5 1 1 0
...........................................................................................TTCCTACTTTTACTTGATCTTA................................................... 22 0 11 7.73 85 2 43 40 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAGAA.......................................................................................... 24 1 4 5.50 22 18 4 0 0 0
.....................................................AGTTCAAGTAAAGGTAAAGAGCG........................................................................................ 23 0 4 3.25 13 3 8 2 0 0
..................................................TAGAGTTCAAGTAAAGGTAA.............................................................................................. 20 0 5 2.60 13 11 0 1 1 0
...................................................AGAGTTCAAGTAAAGGTAAAG............................................................................................ 21 0 4 1.50 6 2 1 3 0 0
..............................................................................................CTACTTTTACTTGATCTTATCT................................................ 22 0 11 1.27 14 2 2 6 1 3
..................................................TAGAGTTCAAGTAAAGGTAAAGAAA......................................................................................... 25 2 4 1.25 5 4 1 0 0 0
...................................................AGAGTTCAAGTAAAGGTAAAGA........................................................................................... 22 0 4 1.00 4 0 0 4 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAGAGA......................................................................................... 25 1 4 0.75 3 3 0 0 0 0
.....................................................AGTTCAAGTAAAGGTAAAGAGC......................................................................................... 22 0 4 0.75 3 2 0 1 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAGAT.......................................................................................... 24 1 4 0.75 3 2 1 0 0 0
...........................................................................................TTCCTACTTTTACTTGATCT..................................................... 20 0 11 0.73 8 0 1 7 0 0
...........................................................................................TTCCTACTTTTACTTGATCTTAA.................................................. 23 1 11 0.64 7 1 0 6 0 0
..................................................TAGAGTTCAAGTAAAGGTA............................................................................................... 19 0 5 0.60 3 3 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAA............................................................................................ 22 1 5 0.60 3 3 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGCAAAGA........................................................................................... 23 1 4 0.50 2 1 1 0 0 0
..................................................TAGAGTTCAAATAAAGGTAAAG............................................................................................ 22 1 4 0.50 2 2 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGTAACG............................................................................................ 22 1 4 0.50 2 2 0 0 0 0
............................................................................................TCCTACTTTTACTTGATCTT.................................................... 20 0 11 0.27 3 0 0 3 0 0
..................................................TAGAGTTCAACTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
....................................................GAGTTCAAGTAAAGGTAAAGA........................................................................................... 21 0 4 0.25 1 0 1 0 0 0
..................................................TCGAGTTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGCTCAAGTAAAGGTAAAGA........................................................................................... 23 1 4 0.25 1 1 0 0 0 0
.....................................................AGTTCAAGTAAAGGTAAAGAG.......................................................................................... 21 0 4 0.25 1 1 0 0 0 0
....................................................TAGTTCAAGTAAAGGTAAAG............................................................................................ 20 1 4 0.25 1 1 0 0 0 0
..................................................TAGATTTCAAGTAAAGGTAAAGAG.......................................................................................... 24 1 4 0.25 1 0 1 0 0 0
..................................................TAGAGTTCAAGTAAAGGAAAAGA........................................................................................... 23 1 4 0.25 1 0 1 0 0 0
......................................................GTTCAAGCAACGGTCAAGAGC......................................................................................... 21 3 4 0.25 1 0 0 1 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAGG........................................................................................... 23 1 4 0.25 1 1 0 0 0 0
..................................................TAGGGTTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................TACAGTTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTCAATTAAAGGTAAAGA........................................................................................... 23 1 4 0.25 1 0 1 0 0 0
....................................................GAGTTCAAGTAAAGGTAAAGAA.......................................................................................... 22 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGTAAAGAGT......................................................................................... 25 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTCAAGCAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................CAGAGTTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGTACAGA........................................................................................... 23 1 4 0.25 1 0 1 0 0 0
....................................................TAGTTCAAGTAAAGGTAAAGA........................................................................................... 21 1 4 0.25 1 0 1 0 0 0
...................................................AGAGTTCAAGTAGAGGTAAAGA........................................................................................... 22 1 4 0.25 1 0 1 0 0 0
..................................................TAGAATTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
..................................................TAGAGCTCAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 1 0 0 0 0
.................................................CTAGAGTTCAAGTAAAGGTAAAG............................................................................................ 23 1 4 0.25 1 1 0 0 0 0
...................................................AGAGTTCAAGTAAAGGTAAAGAG.......................................................................................... 23 0 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAAGTTAAAGAGT......................................................................................... 25 2 4 0.25 1 1 0 0 0 0
..................................................TAGAGTTAAAGTAAAGGTAAAG............................................................................................ 22 1 4 0.25 1 0 0 0 1 0
..................................................TAGACTTCAAGTAAAGGTAA.............................................................................................. 20 1 5 0.20 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGTAGA............................................................................................. 21 1 5 0.20 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAAGGCAAAGAA.......................................................................................... 24 2 5 0.20 1 0 1 0 0 0
..................................................TAGAGTTCAAGCAAAGGTAAA............................................................................................. 21 1 5 0.20 1 1 0 0 0 0
..................................................TAGGGTTCAAGTAAAGGTAAA............................................................................................. 21 1 5 0.20 1 1 0 0 0 0
...........................................................................................TTCCTACTTTTACTTGATCTC.................................................... 21 1 11 0.18 2 0 0 0 0 2
............................................................................................TCCTACTTTTACTTGATCTTA................................................... 21 0 11 0.18 2 0 0 2 0 0
.............................................................................................CCTACTTTTACTTGATCTT.................................................... 19 0 11 0.18 2 0 1 1 0 0
...........................................................................................TTCCTACTTTTACTTGATCTTAAA................................................. 24 2 11 0.18 2 0 0 2 0 0
.............................................................................TATAAATCGAATTTTTCCTACTTTTACT........................................................... 28 1 7 0.14 1 0 1 0 0 0
..................................................TAGAGTTCAAGTAAGGGTAAAGAA.......................................................................................... 24 2 8 0.13 1 0 0 0 1 0
..................................................TAGAGTTCAAGTAAGGGTAAAG............................................................................................ 22 1 8 0.13 1 0 0 1 0 0
..................................................TAGAGTTCAAGTAAGGGTAAAGA........................................................................................... 23 1 8 0.13 1 1 0 0 0 0
..................................................TAGAGTTCAAGTAAGGGTAAA............................................................................................. 21 1 9 0.11 1 1 0 0 0 0
...........................................................................................TTCCTACTTTTACTCGATCTTA................................................... 22 1 11 0.09 1 0 0 1 0 0
...........................................................................................TTCATACTTTTACTTGATCTTA................................................... 22 1 11 0.09 1 0 1 0 0 0
.............................................................................................CCTACTTTTACTTGATCTTATCTA............................................... 24 1 11 0.09 1 0 0 1 0 0
..............................................................................................CTACTTTTACTTGATCTTATC................................................. 21 0 11 0.09 1 0 1 0 0 0
.............................................................................................CCTACTTTTACTTGATCTTA................................................... 20 0 11 0.09 1 0 1 0 0 0
...........................................................................................TTCCTACTTTTACTTGATCTTT................................................... 22 1 11 0.09 1 0 0 1 0 0
.........................................................................................TTTTCCTACTTTTACTTGATCC..................................................... 22 1 11 0.09 1 0 0 1 0 0
...........................................................................................TTCCTACTTTTACTTGACCTT.................................................... 21 1 11 0.09 1 1 0 0 0 0
............................................................................................TCCTACTTTTACTTGATCTTAA.................................................. 22 1 11 0.09 1 0 0 1 0 0
.............................................................................................CCTGCTTTTACTTGATCTTATCA................................................ 23 2 11 0.09 1 0 0 1 0 0
............................................................................................TCCTACTTTTACTTGATCT..................................................... 19 0 11 0.09 1 0 0 1 0 0
..............................................................................................CTACTTTTACTTGATCTTATCTA............................................... 23 1 11 0.09 1 0 0 1 0 0
...........................................................................................TTCCTACTTTTACTTCATCTT.................................................... 21 1 11 0.09 1 0 0 1 0 0
..............................................................................................CTACTTTTACTTGATCTTATCC................................................ 22 1 11 0.09 1 1 0 0 0 0
.........................................................CAAGTTAAGGTAAAGATC......................................................................................... 18 2 13 0.08 1 0 0 1 0 0
..................................................TAGAGTTCAAGTAAAGTAAA.............................................................................................. 20 2 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

TTTGAATCACTATCAGCGTCATAGTAGTTTTAGTATGGAATATACGTCTCATCTCAAGTTCATTTCCATTTCTCGCAATATTTAGCTTTAAAAGGATGAAAATGAACTAGAATAGAGCCGCATATTTTTTGAGAATTCTCTTTTTGATTCACTAGCAGCGTCCT

*************************************...((((((((.(((..(((.(((((((((((((((((.((........))...))))..))))))))))))).)))..))).)))))))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total V118

embryo
.................................................................................TTAGCTTTAAAAGGATGAAAA.............................................................. 21 0 7 0.14 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004511:3393201-3393364 - dwi_61 confident AAACTTAGTGATAGTCGCAGTATCATCAAAATCATACCTTATATGCAGAGTAGAGTTCAAGTAAAGGTAAAGAGCGTTATAAATCGAAATTTTCCTACTTTTACTTGATCTTATCTCGGCGTATAAAAAACTCTTAAGAGAAAAACTAAGTGATCGTCGCAGGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AAACTTAGTGATAGTCGCAGTATCATCAAAATCATACCTTATATGCAGAGTAGAGTTCAAGTAAAGGTAAAGAGCGTTATAAATCGAAATTTTCCTACTTTTACTTGATCTTATCTCGGCGTATAAAAAACTCTTAAGAGAAAAACTAAGTGATCGTCGCAGGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..................................................TAGAGTTCAAGTAAAGGTAAAG............................................................................................22481.00324010291176
..................................................TAGAGTTCAAGTAAAGGTAAAGA...........................................................................................23456.50226011153620
..................................................TAGAGTTCAAGTAAAGGTAAA.............................................................................................21513.4067055831
...........................................................................................TTCCTACTTTTACTTGATCTT....................................................211110.73118394588
..................................................TAGAGTTCAAGTAAAGGTAAAGAG..........................................................................................2448.2533012651
...........................................................................................TTCCTACTTTTACTTGATCTTA...................................................22117.73850402430
..................................................TAGAGTTCAAGTAAAGGTAAAGAA..........................................................................................2445.5022001840
.....................................................AGTTCAAGTAAAGGTAAAGAGCG........................................................................................2343.251302380
..................................................TAGAGTTCAAGTAAAGGTAA..............................................................................................2052.6013011101
...................................................AGAGTTCAAGTAAAGGTAAAG............................................................................................2141.50603210
..............................................................................................CTACTTTTACTTGATCTTATCT................................................22111.271436221
..................................................TAGAGTTCAAGTAAAGGTAAAGAAA.........................................................................................2541.25500410
...................................................AGAGTTCAAGTAAAGGTAAAGA...........................................................................................2241.00404000
..................................................TAGAGTTCAAGTAAAGGTAAAGAGA.........................................................................................2540.75300300
.....................................................AGTTCAAGTAAAGGTAAAGAGC.........................................................................................2240.75301200
..................................................TAGAGTTCAAGTAAAGGTAAAGAT..........................................................................................2440.75300210
...........................................................................................TTCCTACTTTTACTTGATCT.....................................................20110.73807010
...........................................................................................TTCCTACTTTTACTTGATCTTAA..................................................23110.64706100
..................................................TAGAGTTCAAGTAAAGGTA...............................................................................................1950.60300300
..................................................TAGAGTTCAAGTAAAGGTAAAA............................................................................................2250.60300300
............................................................................................TCCTACTTTTACTTGATCTT....................................................20110.27303000
....................................................GAGTTCAAGTAAAGGTAAAGA...........................................................................................2140.25100010
.....................................................AGTTCAAGTAAAGGTAAAGAG..........................................................................................2140.25100100
..................................................TAGAGTTCAAGTAAAGGTAAAGG...........................................................................................2340.25100100
....................................................GAGTTCAAGTAAAGGTAAAGAA..........................................................................................2240.25100100
..................................................TAGAGTTCAAGTAAAGGTAAAGAGT.........................................................................................2540.25100100
...................................................AGAGTTCAAGTAAAGGTAAAGAG..........................................................................................2340.25100100
...........................................................................................TTCCTACTTTTACTTGATCTC....................................................21110.18220000
............................................................................................TCCTACTTTTACTTGATCTTA...................................................21110.18202000
.............................................................................................CCTACTTTTACTTGATCTT....................................................19110.18201010
...........................................................................................TTCCTACTTTTACTTGATCTTAAA.................................................24110.18202000
.............................................................................................CCTACTTTTACTTGATCTTATCTA...............................................24110.09101000
..............................................................................................CTACTTTTACTTGATCTTATC.................................................21110.09100010
.............................................................................................CCTACTTTTACTTGATCTTA...................................................20110.09100010
...........................................................................................TTCCTACTTTTACTTGATCTTT...................................................22110.09101000
.........................................................................................TTTTCCTACTTTTACTTGATCC.....................................................22110.09101000
............................................................................................TCCTACTTTTACTTGATCTTAA..................................................22110.09101000
............................................................................................TCCTACTTTTACTTGATCT.....................................................19110.09101000
..............................................................................................CTACTTTTACTTGATCTTATCTA...............................................23110.09101000
..............................................................................................CTACTTTTACTTGATCTTATCC................................................22110.09100100

Generated: 10/20/2015 at 07:36 PM