ID:

dwi_59

Coordinate:

scf2_1100000004909:7946638-7946700 +

Confidence:

Known Ortholog

Class:

Testes-restricted

Genomic Locale:

5pUTR

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.4 -25.4 -24.7

Flybase annnotation

utr5 [utr5_plus_15687]

No Repeatable elements found

Sense Strand Reads

CTGCACACAAGAAAAGCGAATCATTCATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTTTGGAAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAACGATAACAAATCAAGTGATCTCAATTGAAAAG

***********************************.(((.(((..(((...(((...(((((((((.(((((((............))))))).)))))))))...)))...)))..))).)))...************************************
Read size # Mismatch Hit Count Total Norm Total V117

male body
V118

embryo

V119

head

M045

female body

M020

head

..................................................AAGCGAGCAAGAAAGTGGTATT........................................................................................... 22 0 1 662.00 662 649 7 4 1 1
..................................................AAGCGAGCAAGAAAGTGGTATTT.......................................................................................... 23 0 1 150.00 150 144 3 2 1 0
..................................................AAGCGAGCAAGAAAGTGGTAT............................................................................................ 21 0 1 51.00 51 50 0 1 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTTC......................................................................................... 24 1 1 5.00 5 5 0 0 0 0
..................................................AAGCGAGCAAGAAAGAGGTATT........................................................................................... 22 1 1 5.00 5 5 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTA............................................................................................. 20 0 1 5.00 5 5 0 0 0 0
..........................................................................................TATAACTTTTTTGGAAGCTACA................................................... 22 0 1 5.00 5 4 1 0 0 0
..................................................AAGCGAGCAAGAAAGTGGAATT........................................................................................... 22 1 1 4.00 4 4 0 0 0 0
..................................................AAGCGAGCAAGAAAGGGGTATT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGGATT........................................................................................... 22 1 1 3.00 3 3 0 0 0 0
..................................................AACCGAGCAAGAAAGTGGTATT........................................................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTGTT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTACT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTTCC........................................................................................ 25 2 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGCATT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGCGGTATTT.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATC........................................................................................... 22 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTA.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0
..................................................AAGCGAGCAAGAAAGCGGTATT........................................................................................... 22 1 1 2.00 2 2 0 0 0 0
...................................................AGCGAGCAAGAAAGTGGTATTT.......................................................................................... 22 0 1 2.00 2 2 0 0 0 0
..................................................AAACGAGCAAGAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGACCAAGAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATCT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCGAGAAAGTGGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGTTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGCAGTATTT.......................................................................................... 23 2 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTCGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGATCAAGAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................GAGCGAGCAAGAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 0 0 1 0 0
..................................................AAGCGAGCAAAGAAGTAGTATTT.......................................................................................... 23 3 2 1.00 2 1 1 0 0 0
..................................................AAGCGAGCAAGACAGTGGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGTAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGTGAGCAAGAAAGTGGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTC.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTCGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTTT......................................................................................... 24 1 1 1.00 1 0 1 0 0 0
..................................................AAGTGAGCAAGAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
.................................................CAAGCGAGCAAGAAAGTGGTATT........................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAGAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAATGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..........................................................................................TATAGCTTTTTTGGAAGCTA..................................................... 20 1 1 1.00 1 0 0 1 0 0
..................................................AAGCGAGCAAGAAATTGGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGATATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGAGAGCAAGAAAGTGGTATTT.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAATAAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTATTAA......................................................................................... 24 2 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAGAAAGTGGTCTT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
...................................................AGCGAGCAAGAAAGTGGTATTTA......................................................................................... 23 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAAAGAAGTAGTATT........................................................................................... 22 3 5 1.00 5 2 3 0 0 0
..................................................AAGCGAGCAAGCAAGTGGTATT........................................................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AAGCGAGCAGGAAAGTGGTATTCC......................................................................................... 24 3 1 1.00 1 1 0 0 0 0
..............................................................................................................................................CAAGCGCTCTCAATTGAA... 18 2 12 0.08 1 0 1 0 0 0

Anti-sense strand reads

GACGTGTGTTCTTTTCGCTTAGTAAGTAAAAAGGTTACCGGTATAGGAGATTCGCTCGTTCTTTCACCATAAACAGAAACCTTTAAGTTTATATTGAAAAAACCTTCGATGTTCCGTTACAGGTGTTAGTTGCTATTGTTTAGTTCACTAGAGTTAACTTTTC

************************************.(((.(((..(((...(((...(((((((((.(((((((............))))))).)))))))))...)))...)))..))).)))...***********************************
Read size # Mismatch Hit Count Total Norm Total V117

male body
M045

female body

..........................................ATAGGAGGTTCGCTGGTTC...................................................................................................... 19 2 1 1.00 1 1 0
.......GTTTTTTTCCCTTAGTAAGTA....................................................................................................................................... 21 2 2 0.50 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7946588-7946750 + dwi_59 confident CTGC-A--CACA--AGA---A-AAGCGA----------ATC--------A---------------------------------TTC--------------------ATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTT--TG---G--AAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAACGATAA-CAAATCAAGTGATCTCAATTGAAAAG
droVir3 scaffold_13042:917722-917825 - dvi-mir-974-1 Known_mirbase ---------------------------------------------------------------------------------------------------------------------GGCCAATTTCTCTGAGCGAGCAATGAAGTAATATTTGTTCG--ACCTGA--TATAACAAATAAGACTTTTTTGGTCGTTAGCAGGAATTGTCCAT-------------CATTTCAAGTAAT-------------
droMoj3 scaffold_6328:2908517-2908602 - dmo_160 candidate-rescued --------------------------------------------------------------------------------------------------------------------TGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTTGCGTGC-ATC---T--GATATCAAATAAAACTTTTTTGGTTGCTGCGAGGTATTGT-------------------------------------------
droGri2 scaffold_15081:2051206-2051248 - CCA----------------------------------------------------------------------------------------------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT------------------------------------------------------------------------------------------------
droAna3 scaffold_13417:2478460-2478650 - dan_39 confident GCGC-A--CC--AAA--C-A--------------TGAAC--CGCGGCTCAAATCAATCCAA-----T-------CCGAATCCAATCGCGGTTGCAATC------CTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--CTTTTA--ATGGTCAAATATAACTTTTTTGGAAGCTACGAGGAGTTGTCCT----CAGCGCTTATGAAATCGAATGATCCC----------
droBip1 scf7180000395874:49505-49695 - GCGC-A--TA--AAA--ACA--------------TTATT--CGCGCCTCATATC--------------------CCGAA-CCAATCGCGGTTGCAATCCTTGGG-TGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTATTTGTTTTTGTTTGTA--ATGGTCAAATATAACTTTTTTGGAAGCTACAAGGAGTTGTCCT----CAGCGCTTACGAAATTGAATGATCCCA---------
droKik1 scf7180000302517:1176329-1176469 + CTGC-C--TA--GAA--C-----GGTGA------GTATA--GCCGGGACATCTC------------------------------------------------------CGCCAAGCTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTGC--ACTTGAAATTATTCAAATATAACTTTTTTGGAAGCTAGAAGGAGTTGCCCACAAGCA----------------------------------
droFic1 scf7180000454073:1724044-1724204 + CAAC-T--AA--A------ACAAAGTGCTAA--------------------------------GGATACGCAATTAA-----------------------------AAACAAAAAAGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCG--TGCTGA--AAACTCAAATATAACTTTTTTGAAAGCTAAAAGGATTTGTTTGCAATCAGC----TGCATTTCAATTGAA----------TTG
droEle1 scf7180000490751:1106981-1107108 + GAGC-A--AA--AAA--AAAT------------------------------------------------------------------------------ACGGGCTGACTCGGAAAAGGTCATTTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTCCCAAATCA----------------------------------
droRho1 scf7180000761121:198585-198720 - CAAC-T--GA--A-----------GAGAAA------A--------------------------CA----------------------------------ACGAGCTTTCTCGAAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTTCCA--TTAACAATAA---------------------------
droBia1 scf7180000302069:1157343-1157475 - CAGC-A--TA--AAA--A-ACAGAGTGATGA---------------GACAAGGCAA----------TACAAATTTAG-----------------------------AATTTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT---A--AAAGTCAAATATAACTTTTTTGGAAGCTAAGAGG-------------------------------------------------
droTak1 scf7180000415169:850607-850732 - GCAT-A--CA----A----ATTGAGTGATA------A--------------------------TAA------TTTGG-----------------------------AACTTCGAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT--GA--AGAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTGTCC-----------------------------------------
droEug1 scf7180000409109:6710-6867 - CAGC-AAACATA--A----ATAAGGTGATAGTGCTTAAA--ACTAAAACATAAT-------AA------------------------------------TTAAGATTAAGAATAATTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTA--TT-------AAGTCGAATATAACTTTTTTGGAAGCTAAGCGGATGTATCTAAACCCAGC--------------------------------
dm3 chrX:19445673-19445815 + dme-mir-974 Known_mirbase CGA--A--CATC--AAA---T-GCGTGA----------ATCCCAG-GTCC-----------AG------------------------------------GTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--TC---C--AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAA-ATCAGC--------------------------------
droSim2 x:18335032-18335157 + dsi_68 confident GCGA-A--CATC--AAA---T-GTGTGA----------AT-----------------------------------------------------------GTAAACTCAATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------
droSec2 scaffold_8:1728078-1728209 + dse_40 confident GCAGCGAGCATC--AAA---T-GAGTGA----------ATC--------------------AG------------------------------------GTAAACTCGATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------
droEre2 scaffold_4690:9682426-9682549 + der_30 confident GAGT-G---------------------A----------ATCAGGA-AAAC-----------A-G-----------------------------------AACCACTAACTCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--CC---A--AAAGTCAAATATAACTTTTTTGGAAGCTACGGGGATTTGCCCA----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTGC-A--CACA--AGA---A-AAGCGA----------ATC--------A---------------------------------TTC--------------------ATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTT--TG---G--AAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAACGATAA-CAAATCAAGTGATCTCAATTGAAAAGSizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATT...................................................................................................221662.006621164974
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTT..................................................................................................231150.001500114432
..................................................................................................................................AAGCGAGCAAGAAAGTGGTAT....................................................................................................21151.0051005001
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTC.................................................................................................2415.00500500
..................................................................................................................................AAGCGAGCAAGAAAGTGGTA.....................................................................................................2015.00500500
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACA....................................................2215.00500410
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTCC................................................................................................2512.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATC...................................................................................................2212.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTA..................................................................................................2312.00200200
...................................................................................................................................AGCGAGCAAGAAAGTGGTATTT..................................................................................................2212.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTC..................................................................................................2311.00100100
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTT.................................................................................................2411.00100010
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTAA.................................................................................................2411.00100100
...................................................................................................................................AGCGAGCAAGAAAGTGGTATTTA.................................................................................................2311.00100100
droVir3
---------------------------------------------------------------------------------------------------------------------GGCCAATTTCTCTGAGCGAGCAATGAAGTAATATTTGTTCG--ACCTGA--TATAACAAATAAGACTTTTTTGGTCGTTAGCAGGAATTGTCCAT-------------CATTTCAAGTAAT-------------SizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAG.....................................................2215162.0051621102032192130260000000000146200024412929163211326019200100661000000000000000000000701800030000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTT..................................................................................................2314105.00410500300540391620000110000127011112111491148283102108800000810000000000000000000003500001000110000101
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCC...................................................2312172.0021721530401561003400000000107810000005203881405780550000111900000000000000000100005001000126530000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGC....................................................2212157.00215717432523226805400001000004900121105413709644812900001128000000000000000005001110005004718221561500010
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGC....................................................2311581.001581121121035123055000000000043000000043726965328028000001150000000000000000000008030000861449400010
..................................................................................................................................GAGCGAGCAATGAAGTAATATTC..................................................................................................231930.009301010216010900000000001800010002282996421703300000200000000000000000100001900000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCC................................................................................................251904.00904002008000700000000004000000001641869330904200000290000000000000000000002400000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAG.....................................................211870.00870000002601001000000000002400000002012014421203710000103000000000000000000000100000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTA......................................................211826.008264000044040400000000003000000001601364919204200000156000000000000000000000500000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTC.................................................................................................241724.00724000003000600000000002200000002011755619702200000210000000000000000000002100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATT...................................................................................................221432.0043200000403302000000000005010100013610120860300000110000000000000000000001000000000000010000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCCC...............................................................................................261430.00430001005000200000000001700000007279561640500000160000000000000000000001300000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCT..................................................241208.0020810000170001100000000014000000032378580160000022000000000000000001000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCC...................................................241124.00124110100200030000000000100000004124131702000007000000000000000001000100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCC.................................................................................................24197.00970000010002000000000060010000272382401000002000000000000000000000200000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCC..................................................24178.007812000020000000000000040000000614121803000004000000000000000001000100000000100000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCT...................................................23175.007512000010102000000000030000000151021602000005000000000010000001000100000030000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGA....................................................22168.0068301001100500000000003000000067315040000016000000000000000000000100000000000200000
..................................................................................................................................GAGCGAGCAATGAAGTAATAT....................................................................................................21161.00610000000300000000000020000000121981301000002000000000000000000000000000000000000010
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGA....................................................23158.00580000051101000000000020000000115111050000014000000000000000000000100000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTA......................................................20157.00570000060100000000000010000000710215030000011000000000000000000000100000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTCCC...............................................................................................25156.0056000000000200000000003000000019861104000000000000000000000000000300000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTC...................................................23152.0052000004000000000000002000000010911503000006000000000000000000000000000020000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTT.......................................................22147.0047100001010300000000002000000010132801000004000000000000000000000100000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTC..................................................................................................24145.004500000000020000000000300000008831303000003000000000000000000000200000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGT....................................................22144.0044100005030000000000001000000010514030000010000000000000000000000000000010000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTC...................................................24140.00402000000000000000000050000000771600000009000000000000000000000000000000030000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCCC................................................................................................25138.0038000000000000000000000000000061251400000001000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTCC................................................................................................24136.003600000100010000000000200000001374401000003000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTT.......................................................20135.003500000300000000000000000000008611000000007000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTC......................................................21133.003300000400000000000000100000003341003000005000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCA...................................................23131.003100000101000000000000000000001612101000006000000000000000000000000000010000100000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGT....................................................23130.00300000020200000000000000000000652501000006000000000000000000000100000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTT..................................................................................................24127.00270000020000000000000000000000492501000003000000000000000000000100000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAT.....................................................22127.00270000010001000000000060000000321105000007000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATT...................................................................................................23124.00240000000202000000000030000000870101000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTTCC...............................................................................................26119.00190000000000000000000000000000281601000001000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTGTC...............................................................................................24118.00180000000000000000000000000000831300000003000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTT..................................................................................................22117.00170000000301000000000020000000330302000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCCT..................................................25116.00160000000002000000000000000000340601000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTT......................................................21115.00150000060000000000000000000000101300000004000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCTC..................................................24114.00140000000000000000000000000000231301000004000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCA................................................................................................25113.00130000000001000000000010000000131600000000000000000000000000000000000000000000000
...............................................................................................................................................................................AATAAGACTTTTTTGGTCGTTA......................................................22113.00130000000000000000000000000000322301000002000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATA.....................................................................................................20112.00120000000000000000000000000000460101000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTC.................................................................................................23112.00120000000000000000000000000000730000000002000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTA.................................................................................................24112.00120000000000000000000000000000160500000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTC......................................................23112.00120000000000000000000020000000311301000001000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTAG.....................................................24111.00110000000000000000000010000000211500000001000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTT..................................................................................................21110.00100000000000000000000000000000131300000001000000000000000000000100000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTT..................................................................................................19110.00100000000000000000000000000000241300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCA.................................................................................................24110.00100000000001000000000010000000211400000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTGT................................................................................................23110.00100000000103000000000000000000320100000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTG.................................................................................................22110.00100000000303000000000000000000101100000000000000000000000000000100000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTC......................................................2019.0090000010000000000000000000000111201000002000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCCT.................................................2518.0080000030000000000000010000000100300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATC.....................................................................................................2018.0080000000000000000000010000000200301000000000000000000000000000100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTTC................................................................................................2518.0080000000000000000000000000000331100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTCC..................................................2418.0081000000000000000000010000000203000000000000000000000000000000000000010000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTT.................................................................................................2418.0080000000010000000000000000000301300000000000000000000000000000000000000000000000
......................................................................................................................................................................................CTTTTTTGGTCGTTAGCC...................................................1817.0074000000000000000000000000000100000000002000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCT...................................................2417.0073000000100000000000000000000000200000001000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATT...................................................................................................2116.0060000000600000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTA......................................................2316.0060000000001000000000000000000110300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCT.................................................................................................2416.0060000000000000000000000000000211200000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTCC.................................................................................................2516.0060000000000000000000010000000101300000000000000000000000000000000000000000000000
.....................................................................................................................................CGAGCAATGAAGTAATATTT..................................................................................................2015.0050000000000000000000010000000010200000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAC.....................................................2215.0050000000000000000000020000000110100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTCCC...............................................................................................2715.0050000000000000000000000000000011300000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTC.......................................................2014.0041000000000000000000010000000000200000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTCC..................................................2514.0040000000000000000000030000000001000000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATAT....................................................................................................2214.0040000000000000000000000000000111100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTGT................................................................................................2513.0030000000000000000000000000000100100000001000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAAT......................................................................................................1913.0030000000100000000000000000000010100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTCC................................................................................................2613.0030000000000000000000000000000101100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTC.................................................................................................2513.0030000000000000000000000000000120000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAC.....................................................2113.0030000000000000000000020000000000100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTA..................................................................................................2313.0030000000001000000000000000000000200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACTTTTTTGGTCGTTAGC....................................................1813.0030000010000000000000000000000000002000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGG....................................................2213.0030000000002000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAG.....................................................1813.0030000000000000000000000000000020100000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAG.....................................................2013.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTC..................................................................................................1913.0030000000000000000000000000000011100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCCC.................................................2513.0030000000000000000000000000000001101000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGAC...................................................2313.0033000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACTTTTTTGGTCGTTAGCC...................................................1913.0031000000000000000000000000000100000000001000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTGTC...............................................................................................2613.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCCC..................................................2513.0030000000000000000000000000000000300000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAT..................................................2412.0020000000000000000000000000000000002000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTAAA...............................................................................................2612.0020000000000000000000000000000000000000100000000000000000000000000010000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTC..........................................................1912.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCA..................................................2412.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTCT..................................................2412.0020000000000000000000000000000001000000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAA.....................................................2212.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATC...................................................................................................2212.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCCA...............................................................................................2612.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAG..................................................2412.0020000000000000000000000000000000101000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAGC....................................................1912.0020000000000000000000010000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTC.......................................................2212.0020000000000000000000000000000010000000001000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAGC....................................................2112.0020000000000000000000000000001010000000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTCC.................................................................................................2012.0020000000000000000000000000000011000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAGCC...................................................2012.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTC..................................................................................................2112.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAA..................................................2412.0020000000000000000000000010000001000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTC..................................................................................................2212.0020010000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTTCC................................................................................................2112.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATA.....................................................................................................2112.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AGACTTTTTTGGTCGTTAG.....................................................1912.0020000000000000000000000000000000101000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAT.....................................................2112.0020000000100000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAGCC...................................................2212.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTA......................................................1912.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCG................................................................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTCT.....................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTG......................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGT........................................................1911.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTAG......................................................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTTC..................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................AATAAGACTTTTTTGGTCGTTAG.....................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTG.................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTTC.................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATA.....................................................................................................1911.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATCC..................................................................................................2311.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCTC.................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------TGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTTGCGTGC-ATC---T--GATATCAAATAAAACTTTTTTGGTTGCTGCGAGGTATTGT-------------------------------------------SizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
..................................................................................................................................GAGCGAGCAGAGAAGTATTA.....................................................................................................201112.0011200120109
..................................................................................................................................GAGCGAGCAGAGAAGTATT......................................................................................................19136.00360001035
..................................................................................................................................GAGCGAGCAGAGAAGTATTT.....................................................................................................20113.00130000013
..................................................................................................................................GAGCGAGCAGAGAAGTATTAA....................................................................................................21112.00120010011
..................................................................................................................................GAGCGAGCAGAGAAGTATTC.....................................................................................................2018.008100007
..................................................................................................................................GAGCGAGCAGAGAAGTATTTT....................................................................................................2112.002000002
..................................................................................................................................GAGCGAGCAGAGAAGTATC......................................................................................................1911.001000001
..................................................................................................................................GAGCGAGCAGAGAAGTATTTC....................................................................................................2111.001000001
droGri2
CCA----------------------------------------------------------------------------------------------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body
V109

Male-body
No Reads
droAna3
GCGC-A--CC--AAA--C-A--------------TGAAC--CGCGGCTCAAATCAATCCAA-----T-------CCGAATCCAATCGCGGTTGCAATC------CTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--CTTTTA--ATGGTCAAATATAACTTTTTTGGAAGCTACGAGGAGTTGTCCT----CAGCGCTTATGAAATCGAATGATCCC----------SizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................221355.003554101929437
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231114.0011410059117
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACG....................................................22180.00801005740
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21154.00540002511
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................24111.0011000074
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................2219.009000054
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGT...................................................2318.008000170
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2114.004000040
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................2013.003000120
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTAC.....................................................2212.002000020
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTAC.....................................................2112.002000020
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTC.................................................................................................2411.001000001
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTA......................................................2111.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................2311.001000010
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGA...................................................2311.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTT.....................................................................................................2011.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAG....................................................................................................2111.001000001
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTA......................................................2011.001000010
....................................................................................................................................GCGAGCAAAGAAGTAGTATTG..................................................................................................2111.001000010
droBip1
GCGC-A--TA--AAA--ACA--------------TTATT--CGCGCCTCATATC--------------------CCGAA-CCAATCGCGGTTGCAATCCTTGGG-TGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTATTTGTTTTTGTTTGTA--ATGGTCAAATATAACTTTTTTGGAAGCTACAAGGAGTTGTCCT----CAGCGCTTACGAAATTGAATGATCCCA---------SizeHit CountTotal NormTotal
No Reads
droKik1
CTGC-C--TA--GAA--C-----GGTGA------GTATA--GCCGGGACATCTC------------------------------------------------------CGCCAAGCTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTGC--ACTTGAAATTATTCAAATATAACTTTTTTGGAAGCTAGAAGGAGTTGCCCACAAGCA----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAAC-T--AA--A------ACAAAGTGCTAA--------------------------------GGATACGCAATTAA-----------------------------AAACAAAAAAGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCG--TGCTGA--AAACTCAAATATAACTTTTTTGAAAGCTAAAAGGATTTGTTTGCAATCAGC----TGCATTTCAATTGAA----------TTGSizeHit CountTotal NormTotal
No Reads
droEle1
GAGC-A--AA--AAA--AAAT------------------------------------------------------------------------------ACGGGCTGACTCGGAAAAGGTCATTTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTCCCAAATCA----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAAC-T--GA--A-----------GAGAAA------A--------------------------CA----------------------------------ACGAGCTTTCTCGAAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTTCCA--TTAACAATAA---------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGC-A--TA--AAA--A-ACAGAGTGATGA---------------GACAAGGCAA----------TACAAATTTAG-----------------------------AATTTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT---A--AAAGTCAAATATAACTTTTTTGGAAGCTAAGAGG-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAT-A--CA----A----ATTGAGTGATA------A--------------------------TAA------TTTGG-----------------------------AACTTCGAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT--GA--AGAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTGTCC-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGC-AAACATA--A----ATAAGGTGATAGTGCTTAAA--ACTAAAACATAAT-------AA------------------------------------TTAAGATTAAGAATAATTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTA--TT-------AAGTCGAATATAACTTTTTTGGAAGCTAAGCGGATGTATCTAAACCCAGC--------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGA--A--CATC--AAA---T-GCGTGA----------ATCCCAG-GTCC-----------AG------------------------------------GTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--TC---C--AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAA-ATCAGC--------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231124226.0012422600000000000200000000000000000000000000002000100000000000000000000000000000000001000010002010023007001002001000011000300001000100000000000000000000110011620000000000000003010008010004000000291603919000023904883100000010000071007240100000001000000000000011016400161010210100024701253102100332124612041103022310810237090002039319496830211056261063026224037155201435361112731226492400
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................22198506.00985060000000000020000000000011000000000000000010001000000000000000000000000000000000000007000100200700400233000000005000000002010200000000000000000000000003000000000000000200100071100040000000208024190000275024911000000300000700041811000000000000000000001010073002200201200000135098700401022403190301800241263061891700000325066653500012373385459462313017582149114372192950729815390
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAG....................................................2213390.00339000000000000100000000000420000000000000000201000000100000000000000000000000000000000000000000006004000000002010080000000000100000000000000000000000000080000000000000000101000101000200000002692163000022002720000000000004900011000000100000000000000000000090040010000000004024110000036000000040020000112331000000360364600020001776100000305026000000100120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................2112894.002894000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000100200000000000001000000000000100000000000000000000000000000000000000000010000020000000000000241153000021016900000000000000000000000000000000000000000000001000002100000000201260000000100000001000110100140100000120283000000032091200000210409000000155050
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................241598.00598000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000604100000052000000000000000001000000000000000000000000000000000000100000000060000000000000000000000000000000003010400000004390000100010300110025000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTA......................................................201383.00383000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000130800001409000000000000000000000000000000000100000000000010010000000000000071000000010000000200001000050100000405300000001890000000000100100040010
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAG....................................................231347.0034700000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000200000000000000000000000000000000000080800001401100000000000001000010000000000000000000000000002000000000000000002800000000000000000000000404000000200330002000241000000100000000009000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTG.................................................................................................241316.00316000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000300000000000000000000000000000000000000000000001000000000000000002000000000000000000000000010000000001000000002870000003000000000012000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTA......................................................211281.00281000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000908000010010000000000000000000000000000000000000000000000000010000000000000041000000110000000000000010020000000103200000011630000000000100100022000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................221270.00270000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000007000000400000000000000000000000000000000000000000000000000000000000000008000000000000000000000000010000000000100000002330000002000100000011000
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................191267.002670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001030000101000000000000000000100000000000000000000000000000000000000000000025000000000000000000000000010100000201100000111831010102001200000035000
................................................................................................................................................................................ATATAACTTCATTGGAAGCT.......................................................201158.00158000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000701000000200000000000000000000000000000000000000000000000000000000000000003600000000000000010000000000000000000310000000810010000000000000023000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................201145.001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000100000000000000011000030100000000000000000000000000000000000000000000000000000000000000000900000000000000000000000001000000000110000001920000001001000000011000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAA.....................................................211134.001340000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000000000000000000000000100000100000000000009060000130170000000000000000000000000000000000000000000000000000000000000000130000000000000001000000000100000001002000000054000000000000000006000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTA.................................................................................................241118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000010000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000002011000001086000000100030000003000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATC...................................................................................................221118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000020110000001104000000001000000005000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................231112.0011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000030200000000811000002000000000014000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGT...................................................231105.0010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000060100001010000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000077000000000000000005000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................21198.00980000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000004000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000001010000000082000000000010000003000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................23175.007500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000011000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000001010000000051000000100000000007000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGA...................................................23172.007200000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040200001012000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000001002000000044000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCT.......................................................19165.006500000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002000000000000000000000000000000000000000000000000000000000000100003050000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000021000000000000000000000000013000
...............................................................................................................GTCACCGGTCATGTCCTCC.........................................................................................................................19163.006300000000000000000000000400000000000000000000000000000000000000000000000000000000000010000001010010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000180000000000000000025010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTT..................................................................................................24162.00620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000010000000056000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAG.......................................................................................................18140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000503000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000010000000021000000010000000000010000008000
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................23138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000031000000000000000001000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAA.....................................................22131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000204000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000019000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTG..................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000006000000000000000009000
..............................................................................................................TGTCACCGGTCATGTCCTCC.........................................................................................................................20125.0025000000000000000000000004000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000008000000000000000007000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................22121.00210000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000018000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAA....................................................22114.0014000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010300000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000002000000003000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTATC................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGC...................................................23113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................GAGCAAAGAAGTAGTATTT..................................................................................................19112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000010300000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000000000
....................................................................................................................................GCGAGCAAAGAAGTAGTATTT..................................................................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000009000000000000000000000
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................18110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000003000
................................................................................................................TCACCGGTCATGTCCTCC.........................................................................................................................1819.009000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................CGAGCAAAGAAGTAGTATTT..................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATG...................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000000001000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAGA...................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006200000000000000000000
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000
.....................................................................................................................................CGAGCAAAGAAGTAGTATT...................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTT.....................................................................................................2017.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTGTG...............................................................................................2617.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAC....................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000004000000000000000001000
..................................................................................................................................................................................ATAACTTCATTGGAAGCTAAG....................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000005000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAGT...................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000
.......................................................................................................................................AGCAAAGAAGTAGTATTT..................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTC.................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAT.....................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000003000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTAA................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000003000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGC......................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000002000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAT.....................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000
droSim2
GCGA-A--CATC--AAA---T-GTGTGA----------AT-----------------------------------------------------------GTAAACTCAATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATT...................................................................................................2211194.001194030004811024112300641001
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAT....................................................................................................211871.00871020017930000200685000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGG....................................................221431.004310110235584436140024000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTA.....................................................................................................201270.0027000002253000020040000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTT..................................................................................................231225.0022502005210000200168000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTT..................................................................................................221139.0013903001300000000123000
.................................................................................................................................................................................TATAACTTCTTTGAAAGC........................................................181136.001360100133200000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGG.......................................................................................................181118.001180000116100001000000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTA......................................................20190.0090000088100000001000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAG.....................................................21183.0083000082100000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATT...................................................................................................21176.0076010080000000067000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCT.......................................................19163.0063030058100001000000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAG.....................................................22157.00570000231000000033000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGT...................................................23147.0047000047000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGT......................................................................................................19139.0039000038000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTT.................................................................................................24126.0026000000000000026000
...................................................................................................................................AGCGAGCAAAGAAGTGGTAT....................................................................................................20116.0016000030000000013000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTA..................................................................................................23116.0016000000000000016000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTT.................................................................................................23115.0015000000000000015000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGG....................................................23112.001200009000010002000
...................................................................................................................................AGCGAGCAAAGAAGTGGTA.....................................................................................................19110.001000006000000004000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTA......................................................2117.00701005000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAGG....................................................2117.00700007000000000000
................................................................................................................TCACTGGTCGTGTCCTCC.........................................................................................................................1816.00613002000000000000
................................................................................................................................................................................ATATAACTTCTTTGAAAG.........................................................1816.00600006000000000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGG....................................................1814.00400000000004000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAA....................................................................................................2114.00400000000000004000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTA.................................................................................................2414.00400000000000004000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCT.......................................................2014.00412001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTAA.................................................................................................2413.00300000000000003000
................................................................................................................................................................................ATATAACTTCTTTGAAAGC........................................................1913.00300003000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTTA................................................................................................2513.00300000000000003000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATA...................................................................................................2213.00300000000000003000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGA...................................................2312.00200000000001001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTG.................................................................................................2312.00200000000000002000
...............................................................................................................GTCACTGGTCGTGTCCTCC.........................................................................................................................1912.00201001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTT.....................................................................................................2012.00200000000000002000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAG.....................................................2012.00200002000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTA..................................................................................................2212.00200000000000002000
...................................................................................................................................AGCGAGCAAAGAAGTGGTT.....................................................................................................1911.00100000000000001000
...............................................................................................................................................................................AATATAACTTCTTTGAAAGCTAG.....................................................2311.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTTA................................................................................................2411.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAAA...................................................................................................2211.00100000000000001000
....................................................................................................................................GCGAGCAAAGAAGTGGTATTT..................................................................................................2111.00100000000000001000
........................................................................................................................................GCAAAGAAGTGGTATT...................................................................................................1611.00100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATCA..................................................................................................2311.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTTT................................................................................................2411.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGT......................................................................................................1811.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTGC................................................................................................2511.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTAA....................................................................................................2011.00100000000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAGGT...................................................2211.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATAA..................................................................................................2311.00100000000000001000
.....................................................................................................................................CGAGCAAAGAAGTGGTAT....................................................................................................1811.00100001000000000000
.............................................................................................................................................................................CAAATATAACTTCTTTGAAAGC........................................................2211.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTA.................................................................................................2311.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATAAA.................................................................................................2411.00100000000000001000
................................................................................................................TCACTGGTCGTGTCCTCCA........................................................................................................................1911.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTAAA................................................................................................2511.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTTT................................................................................................2511.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGT.........................................................................................................1611.00100000000001000000
.....................................................................................................................................CGAGCAAAGAAGTGGTATTTGCG...............................................................................................2311.00100001000000000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGGT...................................................1911.00100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTGCG...............................................................................................2611.00100001000000000000
.....................................................................................................................................CGAGCAAAGAAGTGGTATTTGCGT..............................................................................................2411.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATA...................................................................................................2111.00100000000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTA......................................................1911.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTA........................................................................................................1711.00100000000000001000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGA....................................................2311.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGC.......................................................................................................1820.50100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAG..........................................................................................................1520.50100000000001000000
......................................................................................................................................GAGCAAAGAAGTGGT......................................................................................................1520.50100000000001000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGAA...................................................1950.20100000000000001000
droSec2
GCAGCGAGCATC--AAA---T-GAGTGA----------ATC--------------------AG------------------------------------GTAAACTCGATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................2211247.001247211901144
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231186.00186118113
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGG....................................................221105.00105486105
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21135.003513301
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................22118.001801710
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAG.....................................................2116.0060600
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................2015.0050500
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2113.0031101
................................................................................................................TCACTGGTCGTGTCCTCC.........................................................................................................................1812.0020011
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGT...................................................2312.0020110
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................1912.0020200
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................2212.0020200
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTAT....................................................................................................2211.0010100
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGG....................................................2311.0010100
...............................................................................................................GTCACTGGTCGTGTCCTCC.........................................................................................................................1911.0010010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................2311.0010001
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2011.0011000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................2411.0010100
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTA......................................................2111.0010010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................2311.0010100
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGA....................................................2211.0010100
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGC...................................................2311.0011000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTTG.................................................................................................2311.0010100
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................1811.0010100
droEre2
GAGT-G---------------------A----------ATCAGGA-AAAC-----------A-G-----------------------------------AACCACTAACTCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--CC---A--AAAGTCAAATATAACTTTTTTGGAAGCTACGGGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................2213284.003284507029533190
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................2311614.0016142011014581430
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACG....................................................221178.001786050155120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21185.008500008410
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................24143.004300004120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................20110.001000001000
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGT...................................................2317.0070000700
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTACG....................................................2316.0060000420
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTA.................................................................................................2415.0050000500
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2115.0052000300
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................1914.0040000400
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTG.................................................................................................2413.0030000300
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTACGT...................................................2412.0020000200
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTA......................................................2012.0020000200
.....................................................................................................................................CGAGCAAAGAAGTAGTATT...................................................................................................1912.0020000110
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................2212.0020000200
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTTT.................................................................................................2511.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTG..................................................................................................2311.0010000100
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTAC.....................................................2111.0010000100
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTAC.....................................................2211.0010000100
...................................................................................................................................................................................TAACTTTTTTGGAAGCTACG....................................................2011.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................2311.0010000010
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................1811.0010000100
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2011.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................2311.0010000010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTT..................................................................................................2411.0010000010
...................................................................................................................................AGCGAGCAAAGAAGTAGTAT....................................................................................................2011.0010000100
....................................................................................................................................GCGAGCAAAGAAGTAGTATTT..................................................................................................2111.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTAA.................................................................................................2411.0010000100
..................................................................................................................................................................................ATAACTTTTTTGGAAGCTACG....................................................2111.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................2211.0010000100
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................2311.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATC...................................................................................................2211.0010000100

Generated: 10/20/2015 at 06:59 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004909:7946588-7946750 + dwi_59 confident CTGC-A--CACA--AGA---A-AAGCGA----------ATC--------A---------------------------------TTC--------------------ATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTT--TG---G--AAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAACGATAA-CAAATCAAGTGATCTCAATTGAAAAG
droVir3 scaffold_13042:917722-917825 - dvi-mir-974-1 Known_mirbase ---------------------------------------------------------------------------------------------------------------------GGCCAATTTCTCTGAGCGAGCAATGAAGTAATATTTGTTCG--ACCTGA--TATAACAAATAAGACTTTTTTGGTCGTTAGCAGGAATTGTCCAT-------------CATTTCAAGTAAT-------------
droMoj3 scaffold_6328:2908517-2908602 - dmo_160 candidate-rescued --------------------------------------------------------------------------------------------------------------------TGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTTGCGTGC-ATC---T--GATATCAAATAAAACTTTTTTGGTTGCTGCGAGGTATTGT-------------------------------------------
droGri2 scaffold_15081:2051206-2051248 - CCA----------------------------------------------------------------------------------------------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT------------------------------------------------------------------------------------------------
droAna3 scaffold_13417:2478460-2478650 - dan_39 confident GCGC-A--CC--AAA--C-A--------------TGAAC--CGCGGCTCAAATCAATCCAA-----T-------CCGAATCCAATCGCGGTTGCAATC------CTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--CTTTTA--ATGGTCAAATATAACTTTTTTGGAAGCTACGAGGAGTTGTCCT----CAGCGCTTATGAAATCGAATGATCCC----------
droBip1 scf7180000395874:49505-49695 - GCGC-A--TA--AAA--ACA--------------TTATT--CGCGCCTCATATC--------------------CCGAA-CCAATCGCGGTTGCAATCCTTGGG-TGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTATTTGTTTTTGTTTGTA--ATGGTCAAATATAACTTTTTTGGAAGCTACAAGGAGTTGTCCT----CAGCGCTTACGAAATTGAATGATCCCA---------
droKik1 scf7180000302517:1176329-1176469 + CTGC-C--TA--GAA--C-----GGTGA------GTATA--GCCGGGACATCTC------------------------------------------------------CGCCAAGCTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTGC--ACTTGAAATTATTCAAATATAACTTTTTTGGAAGCTAGAAGGAGTTGCCCACAAGCA----------------------------------
droFic1 scf7180000454073:1724044-1724204 + CAAC-T--AA--A------ACAAAGTGCTAA--------------------------------GGATACGCAATTAA-----------------------------AAACAAAAAAGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCG--TGCTGA--AAACTCAAATATAACTTTTTTGAAAGCTAAAAGGATTTGTTTGCAATCAGC----TGCATTTCAATTGAA----------TTG
droEle1 scf7180000490751:1106981-1107108 + GAGC-A--AA--AAA--AAAT------------------------------------------------------------------------------ACGGGCTGACTCGGAAAAGGTCATTTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTCCCAAATCA----------------------------------
droRho1 scf7180000761121:198585-198720 - CAAC-T--GA--A-----------GAGAAA------A--------------------------CA----------------------------------ACGAGCTTTCTCGAAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTTCCA--TTAACAATAA---------------------------
droBia1 scf7180000302069:1157343-1157475 - CAGC-A--TA--AAA--A-ACAGAGTGATGA---------------GACAAGGCAA----------TACAAATTTAG-----------------------------AATTTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT---A--AAAGTCAAATATAACTTTTTTGGAAGCTAAGAGG-------------------------------------------------
droTak1 scf7180000415169:850607-850732 - GCAT-A--CA----A----ATTGAGTGATA------A--------------------------TAA------TTTGG-----------------------------AACTTCGAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT--GA--AGAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTGTCC-----------------------------------------
droEug1 scf7180000409109:6710-6867 - CAGC-AAACATA--A----ATAAGGTGATAGTGCTTAAA--ACTAAAACATAAT-------AA------------------------------------TTAAGATTAAGAATAATTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTA--TT-------AAGTCGAATATAACTTTTTTGGAAGCTAAGCGGATGTATCTAAACCCAGC--------------------------------
dm3 chrX:19445673-19445815 + dme-mir-974 Known_mirbase CGA--A--CATC--AAA---T-GCGTGA----------ATCCCAG-GTCC-----------AG------------------------------------GTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--TC---C--AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAA-ATCAGC--------------------------------
droSim2 x:18335032-18335157 + dsi_68 confident GCGA-A--CATC--AAA---T-GTGTGA----------AT-----------------------------------------------------------GTAAACTCAATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------
droSec2 scaffold_8:1728078-1728209 + dse_40 confident GCAGCGAGCATC--AAA---T-GAGTGA----------ATC--------------------AG------------------------------------GTAAACTCGATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------
droEre2 scaffold_4690:9682426-9682549 + der_30 confident GAGT-G---------------------A----------ATCAGGA-AAAC-----------A-G-----------------------------------AACCACTAACTCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--CC---A--AAAGTCAAATATAACTTTTTTGGAAGCTACGGGGATTTGCCCA----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTGC-A--CACA--AGA---A-AAGCGA----------ATC--------A---------------------------------TTC--------------------ATTTTTCCAATGGCCATATCCTCTAAGCGAGCAAGAAAGTGGTATTTGTCTT--TG---G--AAATTCAAATATAACTTTTTTGGAAGCTACAAGGCAATGTCCACAATCAACGATAA-CAAATCAAGTGATCTCAATTGAAAAGSizeHit CountTotal NormTotalM020

Head
M045

Female-body
V117

Male-body
V118

Embryo
V119

Head
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATT...................................................................................................221662.006621164974
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTT..................................................................................................231150.001500114432
..................................................................................................................................AAGCGAGCAAGAAAGTGGTAT....................................................................................................21151.0051005001
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTC.................................................................................................2415.00500500
..................................................................................................................................AAGCGAGCAAGAAAGTGGTA.....................................................................................................2015.00500500
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACA....................................................2215.00500410
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTCC................................................................................................2512.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATC...................................................................................................2212.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTA..................................................................................................2312.00200200
...................................................................................................................................AGCGAGCAAGAAAGTGGTATTT..................................................................................................2212.00200200
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTC..................................................................................................2311.00100100
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTTT.................................................................................................2411.00100010
..................................................................................................................................AAGCGAGCAAGAAAGTGGTATTAA.................................................................................................2411.00100100
...................................................................................................................................AGCGAGCAAGAAAGTGGTATTTA.................................................................................................2311.00100100
droVir3
---------------------------------------------------------------------------------------------------------------------GGCCAATTTCTCTGAGCGAGCAATGAAGTAATATTTGTTCG--ACCTGA--TATAACAAATAAGACTTTTTTGGTCGTTAGCAGGAATTGTCCAT-------------CATTTCAAGTAAT-------------SizeHit CountTotal NormTotalM027

Male-body
M028

Head
M047

Female-body
M061

Embryo
SRR060654

Ovary
SRR060655

Testis
SRR060656

Ovary
SRR060657

Testis
SRR060658

Ovary
SRR060659

Testis
SRR060660

Ovary
SRR060661

Embryo
SRR060662

Embryo
SRR060663

Embryo
SRR060664

Male-body
SRR060665

Female-body
SRR060666

Male-body
SRR060667

Female-body
SRR060668

Male-body
SRR060669

Female-body
SRR060670

Testis
SRR060671

Male-body
SRR060672

Female-body
SRR060673

Ovary
SRR060674

Ovary
SRR060675

Ovary
SRR060676

Ovary
SRR060677

Ovary
SRR060678

Testis
SRR060679

Testis
SRR060680

Testis
SRR060681

Testis
SRR060682

Embryo
SRR060683

Testis
SRR060684

Embryo
SRR060685

Embryo
SRR060686

Embryo
SRR060687

Embryo
SRR060688

Ovary
SRR060689

Testis
SRR1106712

embryo_0-2h
SRR1106713

embryo_0-2h
SRR1106714

embryo_2-4h
SRR1106715

embryo_4-6h
SRR1106716

embryo_4-6h
SRR1106717

embryo_6-8h
SRR1106718

embryo_6-8h
SRR1106719

embryo_8-10h
SRR1106720

embryo_8-10h
SRR1106721

embryo_10-12h
SRR1106722

embryo_10-12h
SRR1106723

embryo_12-14h
SRR1106724

embryo_12-14h
SRR1106725

embryo_14-16h
SRR1106726

embryo_14-16h
SRR1106727

larvae
SRR1106728

larvae
SRR1106729

mixed whole adult body
SRR1106730

embryo_16-30h
V047

Embryo
V053

Head
V116

Male-body
GSM1528803

follicle cells
SRR2096013

Ovary_Strain_9_oxidized
SRR2096014

Ovary_Strain_160_oxidized
SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers
SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096055

Ovary_Min_43
SRR2096056

Ovary_Min_46
SRR2096057

Ovary_Min_50
SRR2096058

Ovary_Min_98
SRR2096059

Ovary_Min_164
SRR2096060

Ovary_Min_193
SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers
SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers
SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers
SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAG.....................................................2215162.0051621102032192130260000000000146200024412929163211326019200100661000000000000000000000701800030000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTT..................................................................................................2314105.00410500300540391620000110000127011112111491148283102108800000810000000000000000000003500001000110000101
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCC...................................................2312172.0021721530401561003400000000107810000005203881405780550000111900000000000000000100005001000126530000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGC....................................................2212157.00215717432523226805400001000004900121105413709644812900001128000000000000000005001110005004718221561500010
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGC....................................................2311581.001581121121035123055000000000043000000043726965328028000001150000000000000000000008030000861449400010
..................................................................................................................................GAGCGAGCAATGAAGTAATATTC..................................................................................................231930.009301010216010900000000001800010002282996421703300000200000000000000000100001900000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCC................................................................................................251904.00904002008000700000000004000000001641869330904200000290000000000000000000002400000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAG.....................................................211870.00870000002601001000000000002400000002012014421203710000103000000000000000000000100000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTA......................................................211826.008264000044040400000000003000000001601364919204200000156000000000000000000000500000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTC.................................................................................................241724.00724000003000600000000002200000002011755619702200000210000000000000000000002100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATT...................................................................................................221432.0043200000403302000000000005010100013610120860300000110000000000000000000001000000000000010000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCCC...............................................................................................261430.00430001005000200000000001700000007279561640500000160000000000000000000001300000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCT..................................................241208.0020810000170001100000000014000000032378580160000022000000000000000001000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCC...................................................241124.00124110100200030000000000100000004124131702000007000000000000000001000100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCC.................................................................................................24197.00970000010002000000000060010000272382401000002000000000000000000000200000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCC..................................................24178.007812000020000000000000040000000614121803000004000000000000000001000100000000100000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCT...................................................23175.007512000010102000000000030000000151021602000005000000000010000001000100000030000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGA....................................................22168.0068301001100500000000003000000067315040000016000000000000000000000100000000000200000
..................................................................................................................................GAGCGAGCAATGAAGTAATAT....................................................................................................21161.00610000000300000000000020000000121981301000002000000000000000000000000000000000000010
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGA....................................................23158.00580000051101000000000020000000115111050000014000000000000000000000100000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTA......................................................20157.00570000060100000000000010000000710215030000011000000000000000000000100000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTCCC...............................................................................................25156.0056000000000200000000003000000019861104000000000000000000000000000300000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTC...................................................23152.0052000004000000000000002000000010911503000006000000000000000000000000000020000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTT.......................................................22147.0047100001010300000000002000000010132801000004000000000000000000000100000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTC..................................................................................................24145.004500000000020000000000300000008831303000003000000000000000000000200000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGT....................................................22144.0044100005030000000000001000000010514030000010000000000000000000000000000010000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTC...................................................24140.00402000000000000000000050000000771600000009000000000000000000000000000000030000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCCC................................................................................................25138.0038000000000000000000000000000061251400000001000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTCC................................................................................................24136.003600000100010000000000200000001374401000003000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTT.......................................................20135.003500000300000000000000000000008611000000007000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTC......................................................21133.003300000400000000000000100000003341003000005000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCA...................................................23131.003100000101000000000000000000001612101000006000000000000000000000000000010000100000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGT....................................................23130.00300000020200000000000000000000652501000006000000000000000000000100000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTT..................................................................................................24127.00270000020000000000000000000000492501000003000000000000000000000100000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAT.....................................................22127.00270000010001000000000060000000321105000007000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATT...................................................................................................23124.00240000000202000000000030000000870101000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTTCC...............................................................................................26119.00190000000000000000000000000000281601000001000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTGTC...............................................................................................24118.00180000000000000000000000000000831300000003000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTT..................................................................................................22117.00170000000301000000000020000000330302000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCCT..................................................25116.00160000000002000000000000000000340601000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTT......................................................21115.00150000060000000000000000000000101300000004000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCTC..................................................24114.00140000000000000000000000000000231301000004000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCA................................................................................................25113.00130000000001000000000010000000131600000000000000000000000000000000000000000000000
...............................................................................................................................................................................AATAAGACTTTTTTGGTCGTTA......................................................22113.00130000000000000000000000000000322301000002000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATA.....................................................................................................20112.00120000000000000000000000000000460101000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTC.................................................................................................23112.00120000000000000000000000000000730000000002000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTA.................................................................................................24112.00120000000000000000000000000000160500000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTC......................................................23112.00120000000000000000000020000000311301000001000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTAG.....................................................24111.00110000000000000000000010000000211500000001000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTT..................................................................................................21110.00100000000000000000000000000000131300000001000000000000000000000100000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTT..................................................................................................19110.00100000000000000000000000000000241300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCA.................................................................................................24110.00100000000001000000000010000000211400000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTGT................................................................................................23110.00100000000103000000000000000000320100000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTTG.................................................................................................22110.00100000000303000000000000000000101100000000000000000000000000000100000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTC......................................................2019.0090000010000000000000000000000111201000002000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCCT.................................................2518.0080000030000000000000010000000100300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATC.....................................................................................................2018.0080000000000000000000010000000200301000000000000000000000000000100000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTTC................................................................................................2518.0080000000000000000000000000000331100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTCC..................................................2418.0081000000000000000000010000000203000000000000000000000000000000000000010000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTT.................................................................................................2418.0080000000010000000000000000000301300000000000000000000000000000000000000000000000
......................................................................................................................................................................................CTTTTTTGGTCGTTAGCC...................................................1817.0074000000000000000000000000000100000000002000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCT...................................................2417.0073000000100000000000000000000000200000001000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATT...................................................................................................2116.0060000000600000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTTA......................................................2316.0060000000001000000000000000000110300000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTCT.................................................................................................2416.0060000000000000000000000000000211200000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTCC.................................................................................................2516.0060000000000000000000010000000101300000000000000000000000000000000000000000000000
.....................................................................................................................................CGAGCAATGAAGTAATATTT..................................................................................................2015.0050000000000000000000010000000010200000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAC.....................................................2215.0050000000000000000000020000000110100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTCCC...............................................................................................2715.0050000000000000000000000000000011300000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTC.......................................................2014.0041000000000000000000010000000000200000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTCC..................................................2514.0040000000000000000000030000000001000000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATAT....................................................................................................2214.0040000000000000000000000000000111100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTGT................................................................................................2513.0030000000000000000000000000000100100000001000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAAT......................................................................................................1913.0030000000100000000000000000000010100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTCC................................................................................................2613.0030000000000000000000000000000101100000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATATTTC.................................................................................................2513.0030000000000000000000000000000120000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAC.....................................................2113.0030000000000000000000020000000000100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTA..................................................................................................2313.0030000000001000000000000000000000200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACTTTTTTGGTCGTTAGC....................................................1813.0030000010000000000000000000000000002000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGG....................................................2213.0030000000002000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAG.....................................................1813.0030000000000000000000000000000020100000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAG.....................................................2013.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTC..................................................................................................1913.0030000000000000000000000000000011100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCCC.................................................2513.0030000000000000000000000000000001101000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGAC...................................................2313.0033000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................ACTTTTTTGGTCGTTAGCC...................................................1913.0031000000000000000000000000000100000000001000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTGTC...............................................................................................2613.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGCCC..................................................2513.0030000000000000000000000000000000300000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAT..................................................2412.0020000000000000000000000000000000002000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTAAA...............................................................................................2612.0020000000000000000000000000000000000000100000000000000000000000000010000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTC..........................................................1912.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCA..................................................2412.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGTCT..................................................2412.0020000000000000000000000000000001000000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAA.....................................................2212.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATC...................................................................................................2212.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCCA...............................................................................................2612.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAG..................................................2412.0020000000000000000000000000000000101000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAGC....................................................1912.0020000000000000000000010000000010000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAATAAGACTTTTTTGGTCGTC.......................................................2212.0020000000000000000000000000000010000000001000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAGC....................................................2112.0020000000000000000000000000001010000000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTCC.................................................................................................2012.0020000000000000000000000000000011000000000000000000000000000000000000000000000000
....................................................................................................................................................................................GACTTTTTTGGTCGTTAGCC...................................................2012.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
....................................................................................................................................GCGAGCAATGAAGTAATATTC..................................................................................................2112.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCAA..................................................2412.0020000000000000000000000010000001000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTC..................................................................................................2212.0020010000000000000000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTTCC................................................................................................2112.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
.................................................................................................................................TGAGCGAGCAATGAAGTAATA.....................................................................................................2112.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................................................AGACTTTTTTGGTCGTTAG.....................................................1912.0020000000000000000000000000000000101000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAT.....................................................2112.0020000000100000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTAGCC...................................................2212.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..................................................................................................................................................................................AAGACTTTTTTGGTCGTTA......................................................1912.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATTTCG................................................................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTCT.....................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTG......................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGT........................................................1911.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTAG......................................................2111.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................ATAAGACTTTTTTGGTCGTTAGTTC..................................................2511.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................................................................AATAAGACTTTTTTGGTCGTTAG.....................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATATTTG.................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................GAGCAATGAAGTAATATTTC.................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................AGCGAGCAATGAAGTAATA.....................................................................................................1911.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................GAGCGAGCAATGAAGTAATATCC..................................................................................................2311.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TAAGACTTTTTTGGTCGTTAGCCTC.................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------TGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTTTTGCGTGC-ATC---T--GATATCAAATAAAACTTTTTTGGTTGCTGCGAGGTATTGT-------------------------------------------SizeHit CountTotal NormTotalM046

Female-body
V041

Embryo
V049

Head
V056

Head
M060

Embryo
V110

Male-body
..................................................................................................................................GAGCGAGCAGAGAAGTATTA.....................................................................................................201112.0011200120109
..................................................................................................................................GAGCGAGCAGAGAAGTATT......................................................................................................19136.00360001035
..................................................................................................................................GAGCGAGCAGAGAAGTATTT.....................................................................................................20113.00130000013
..................................................................................................................................GAGCGAGCAGAGAAGTATTAA....................................................................................................21112.00120010011
..................................................................................................................................GAGCGAGCAGAGAAGTATTC.....................................................................................................2018.008100007
..................................................................................................................................GAGCGAGCAGAGAAGTATTTT....................................................................................................2112.002000002
..................................................................................................................................GAGCGAGCAGAGAAGTATC......................................................................................................1911.001000001
..................................................................................................................................GAGCGAGCAGAGAAGTATTTC....................................................................................................2111.001000001
droGri2
CCA----------------------------------------------------------------------------------------------------------------AAGGACATCTTCTGTAAGCGAGCAAAAATATAATATTTGT------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body
V109

Male-body
No Reads
droAna3
GCGC-A--CC--AAA--C-A--------------TGAAC--CGCGGCTCAAATCAATCCAA-----T-------CCGAATCCAATCGCGGTTGCAATC------CTGGCTTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--CTTTTA--ATGGTCAAATATAACTTTTTTGGAAGCTACGAGGAGTTGTCCT----CAGCGCTTATGAAATCGAATGATCCC----------SizeHit CountTotal NormTotalM044

Female-body
M058

Embryo
V039

Embryo
V055

Head
V105

Male-body
V106

Head
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................221355.003554101929437
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231114.0011410059117
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACG....................................................22180.00801005740
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21154.00540002511
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................24111.0011000074
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................2219.009000054
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGT...................................................2318.008000170
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2114.004000040
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................2013.003000120
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTAC.....................................................2212.002000020
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTAC.....................................................2112.002000020
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTC.................................................................................................2411.001000001
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTA......................................................2111.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................2311.001000010
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGA...................................................2311.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTT.....................................................................................................2011.001000010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAG....................................................................................................2111.001000001
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTA......................................................2011.001000010
....................................................................................................................................GCGAGCAAAGAAGTAGTATTG..................................................................................................2111.001000010
droBip1
GCGC-A--TA--AAA--ACA--------------TTATT--CGCGCCTCATATC--------------------CCGAA-CCAATCGCGGTTGCAATCCTTGGG-TGGATTGGGGTAGGTCATCTCCTCTAAGCGAGCAAAGAAGGCGTATTTGTTTTTGTTTGTA--ATGGTCAAATATAACTTTTTTGGAAGCTACAAGGAGTTGTCCT----CAGCGCTTACGAAATTGAATGATCCCA---------SizeHit CountTotal NormTotal
No Reads
droKik1
CTGC-C--TA--GAA--C-----GGTGA------GTATA--GCCGGGACATCTC------------------------------------------------------CGCCAAGCTGGTCTTTTCCTCTAAGCGAGCAAAGAAGTGGTATTTGTTGC--ACTTGAAATTATTCAAATATAACTTTTTTGGAAGCTAGAAGGAGTTGCCCACAAGCA----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CAAC-T--AA--A------ACAAAGTGCTAA--------------------------------GGATACGCAATTAA-----------------------------AAACAAAAAAGGAGCATTTCCCCTAAGCGAGCAAAGAAGTAGTATTTGTTCG--TGCTGA--AAACTCAAATATAACTTTTTTGAAAGCTAAAAGGATTTGTTTGCAATCAGC----TGCATTTCAATTGAA----------TTGSizeHit CountTotal NormTotal
No Reads
droEle1
GAGC-A--AA--AAA--AAAT------------------------------------------------------------------------------ACGGGCTGACTCGGAAAAGGTCATTTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTCCCAAATCA----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
CAAC-T--GA--A-----------GAGAAA------A--------------------------CA----------------------------------ACGAGCTTTCTCGAAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TTCTGA--AAAGTCAAATATAACTTTTTTGAAAGCTACGAGGATTTGTTCCA--TTAACAATAA---------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CAGC-A--TA--AAA--A-ACAGAGTGATGA---------------GACAAGGCAA----------TACAAATTTAG-----------------------------AATTTAGAAAAGGTCATCTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT---A--AAAGTCAAATATAACTTTTTTGGAAGCTAAGAGG-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCAT-A--CA----A----ATTGAGTGATA------A--------------------------TAA------TTTGG-----------------------------AACTTCGAATAGGTCATCTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTG--TT--GA--AGAGTCAAATATAACTTTTTTGGAAGCTAAGAGGATTTGTCC-----------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
CAGC-AAACATA--A----ATAAGGTGATAGTGCTTAAA--ACTAAAACATAAT-------AA------------------------------------TTAAGATTAAGAATAATTGGATATGTCCTCTAAGCGAGCAAAGAAGTAGTATTTGTTTA--TT-------AAGTCGAATATAACTTTTTTGGAAGCTAAGCGGATGTATCTAAACCCAGC--------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
CGA--A--CATC--AAA---T-GCGTGA----------ATCCCAG-GTCC-----------AG------------------------------------GTAAGCTCAATTGTCACCGGTCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--TC---C--AAGAGCAAATATAACTTCATTGGAAGCTAAGTGGATTTGCCCAA-ATCAGC--------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary
GSM154620

Ovary
GSM154621

Ovary
GSM154622

Ovary
GSM180328

Head
GSM180329

Mixed-body
GSM180330

Embryo
GSM180331

Embryo
GSM180332

Embryo
GSM180333

Embryo
GSM180334

Larvae
GSM180335

Disc
GSM180336

Pupae
GSM180337

S2
GSM239041

Head
GSM239050

Head
GSM239051

S2
GSM239052

S2
GSM246084

Head
GSM266765

S2
GSM280082

Ovary
GSM280083

Ovary
GSM280084

Ovary
GSM280085

Testis
GSM280086

Ovary
GSM280087

S2-NP
GSM280088

S2-NP
GSM312995

Head
GSM313160

Head
GSM313161

Head
GSM313162

Head
GSM313163

Head
GSM313164

Head
GSM313165

Head
GSM343287

Embryo
GSM379050

Ovary
GSM379051

Ovary
GSM379052

Ovary
GSM379053

Ovary
GSM379054

Ovary
GSM379055

Ovary
GSM379056

Ovary
GSM379057

Ovary
GSM379058

Ovary
GSM379059

Ovary
GSM379060

Ovary
GSM379061

Ovary
GSM379062

Ovary
GSM379063

Ovary
GSM379064

Ovary
GSM379065

Ovary
GSM379066

Ovary
GSM379067

Ovary
GSM424739

S2
GSM424740

S2
GSM424741

S2
GSM467729

Female-body
GSM467730

Female-body
GSM467731

Female-body
M002

CS
M003

Male-body
M004

Male-body
M005

ML-DmD32
M006

ML-DmD32
M029

OSC
M030

OSC
M031

OSC
M032

S2-R+
M033

S2-R+
M034

S2-R+
M035

S2-R+
M036

S2-R+
M037

S2-R+
M038

S2-R+
M039

S2-R+
M048

S2-R+
OSS2

OSS
OSS6

OSS
OSS7

OSS
OSS8

OSS
S1

Head
S10

Embryo
S11

Embryo
S12

Embryo
S13

Embryo
S14

Embryo
S15

S2-GMR
S16

Kc
S17

Larvae
S18

Larvae
S19

Pupae
S2

Head
S20

Pupae
S21

Disc
S22

Head
S23

Female-body
S24

Male-body
S25

Larvae
S26

Larvae
S27

Pupae
S28

Pupae
S29

Head
S3

Male-body
S30

S2-GMR
S31

S2
S32

S2
S33

Kc
S34

Kc
S35

Kc
S4

Female-body
S5

Disc
S6

Embryo
S7

Embryo
S8

S2
S9

Embryo
SRR001337

Head
SRR001338

Head
SRR001339

Head
SRR001340

Head
SRR001341

Head
SRR001342

Head
SRR001343

Head
SRR001344

Head
SRR001345

Head
SRR001346

Head
SRR001347

Head
SRR001348

Head
SRR001349

Head
SRR001664

Head
SRR010951

Ovary
SRR010952

Ovary
SRR010953

Ovary
SRR010954

Ovary
SRR010955

Ovary
SRR010956

Ovary
SRR010957

Ovary
SRR010958

Ovary
SRR010959

Ovary
SRR010960

Ovary
SRR014268

Embryo
SRR014269

Embryo
SRR014270

Embryo
SRR014271

Embryo
SRR014272

Embryo
SRR014273

Ovary
SRR014274

Ovary
SRR014275

Ovary
SRR014276

Ovary
SRR014277

Ovary
SRR014278

Ovary
SRR014279

Ovary
SRR014280

Ovary
SRR014281

Ovary
SRR014282

Ovary
SRR023197

S2
SRR023399

S2
SRR023400

S2
SRR023402

S2
SRR023407

S2
SRR029028

S2
SRR029029

S2
SRR029030

S2
SRR029031

S2
SRR029032

S2
SRR029033

S2
SRR029608

Head
SRR029633

Head
SRR030145

gb3
SRR031692

Head
SRR031693

Head
SRR031694

Head
SRR031696

Head
SRR031697

Head
SRR031698

Head
SRR031699

Head
SRR031700

Head
SRR031701

Head
SRR031702

Head
SRR031703

Head
SRR031704

Head
SRR032092

S2
SRR032093

S2
SRR032094

S2
SRR032095

S2-NP
SRR032096

S2-NP
SRR032152

Head
SRR060643

Testis
SRR060644

Ovary
SRR060645

Testis
SRR060646

Ovary
SRR060647

Ovary
SRR060648

Ovary
SRR060649

Ovary
SRR060650

Testis
SRR060651

Ovary
SRR060652

Testis
SRR060653

Ovary
SRR065151

Ovary
SRR065152

Ovary
SRR065153

Ovary
SRR065154

Ovary
SRR065155

Ovary
SRR065800

Ovary
SRR065801

Ovary
SRR065802

Ovary
SRR065803

Ovary
SRR065804

Ovary
SRR065805

Ovary
SRR065806

Ovary
SRR065807

Ovary
SRR097865

S2-NP
SRR097866

S2-NP
SRR097867

S2-NP
SRR298536

Ovary
SRR298537

Ovary
SRR298711

Ovary
SRR298712

Ovary
SRR317110

Ovary
SRR317111

Ovary
SRR317112

Ovary
SRR317113

Ovary
SRR317114

Ovary
SRR317115

Ovary
SRR317116

Ovary
SRR317117

Ovary
SRR341115

S2
SRR341116

S2
SRR341117

S2
SRR341118

S2
SRR351332

Mixed-body
SRR351333

Mixed-body
T004

OSC
T005

CME-L1
V001

Embryo
V002

Embryo
V003

S2
V006

Female-body
V007

Head
V008

S2
V009

CME-L1
V010

ML-DmD20-C5
V011

Sg4
V012

Male-body
V013

Head
V014

DTT
V015

DreRFHV
V018

Kc167
V019

GM2
V020

S2-R+
V021

ML-DmD21
V022

ML-DmD32
V023

Head
V024

Kc167
V025

S2-R+
V026

1182-2H
V027

ML-DmD21
V028

CME-W1-Cl.8+
V029

ML-DmD9
V030

ML-DmD8
V031

GM2
V032

S1
V033

CME-W1-Cl.8+
V034

ML-DmD16-C3
V035

ML-DmD32
V036

ML-DmD20-C5
V037

S2
V038

S2
V063

Ovary
V0632

Ovary
V064

Ovary
V0642

Ovary
V065

Ovary
V0652

Ovary
V066

Ovary
V0662

Ovary
V067

S2-NP
V073

mbn2
V074

S3
V075

ML-DmBG1-C1
V076

ML-DmBG3-C2
V077

Head
V078

Head
V079

Head
V080

Head
V081

Embryo
V082

Embryo
V083

Male-body
V084

Female-body
V085

CME-W2
V086

Female-body
V088

Ovary
V0882

Ovary
V089

Ovary
V0892

Ovary
V090

Male-body
V091

fGS/OSS
V092

Male-body
V093

Male-body
V094

S2-R+
V095

S2-R+
V096

Ovary
V097

Ovary
V098

Ovary
V125

ML-DmD9
V126

CME-L1
V127

G2
V128

S3
V129

ML-DmBG1-C1
V130

ML-DmBG3-C2
V131

ML-DmD16-C3
V132

ML-DmD32
V133

Sg4
V134

ML-DmD8
V135

CME-W2
V136

Male-body
V137

Head
V138

Male-body
V139

Female-body
V140

Female-body
V141

Female-body
V142

Female-body
V144

OSC
V145

S2
V146

S1
V147

1182-2H
V148

mbn2
GSM1528798

follicle cells
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231124226.0012422600000000000200000000000000000000000000002000100000000000000000000000000000000001000010002010023007001002001000011000300001000100000000000000000000110011620000000000000003010008010004000000291603919000023904883100000010000071007240100000001000000000000011016400161010210100024701253102100332124612041103022310810237090002039319496830211056261063026224037155201435361112731226492400
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................22198506.00985060000000000020000000000011000000000000000010001000000000000000000000000000000000000007000100200700400233000000005000000002010200000000000000000000000003000000000000000200100071100040000000208024190000275024911000000300000700041811000000000000000000001010073002200201200000135098700401022403190301800241263061891700000325066653500012373385459462313017582149114372192950729815390
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAG....................................................2213390.00339000000000000100000000000420000000000000000201000000100000000000000000000000000000000000000000006004000000002010080000000000100000000000000000000000000080000000000000000101000101000200000002692163000022002720000000000004900011000000100000000000000000000090040010000000004024110000036000000040020000112331000000360364600020001776100000305026000000100120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................2112894.002894000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000100200000000000001000000000000100000000000000000000000000000000000000000010000020000000000000241153000021016900000000000000000000000000000000000000000000001000002100000000201260000000100000001000110100140100000120283000000032091200000210409000000155050
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................241598.00598000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000604100000052000000000000000001000000000000000000000000000000000000100000000060000000000000000000000000000000003010400000004390000100010300110025000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTA......................................................201383.00383000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000130800001409000000000000000000000000000000000100000000000010010000000000000071000000010000000200001000050100000405300000001890000000000100100040010
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAG....................................................231347.0034700000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000200000000000000000000000000000000000080800001401100000000000001000010000000000000000000000000002000000000000000002800000000000000000000000404000000200330002000241000000100000000009000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTG.................................................................................................241316.00316000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000204000000300000000000000000000000000000000000000000000001000000000000000002000000000000000000000000010000000001000000002870000003000000000012000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTA......................................................211281.00281000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000908000010010000000000000000000000000000000000000000000000000010000000000000041000000110000000000000010020000000103200000011630000000000100100022000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................221270.00270000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000007000000400000000000000000000000000000000000000000000000000000000000000008000000000000000000000000010000000000100000002330000002000100000011000
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................191267.002670000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001030000101000000000000000000100000000000000000000000000000000000000000000025000000000000000000000000010100000201100000111831010102001200000035000
................................................................................................................................................................................ATATAACTTCATTGGAAGCT.......................................................201158.00158000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000701000000200000000000000000000000000000000000000000000000000000000000000003600000000000000010000000000000000000310000000810010000000000000023000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................201145.001450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000100000000000000011000030100000000000000000000000000000000000000000000000000000000000000000900000000000000000000000001000000000110000001920000001001000000011000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAA.....................................................211134.001340000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000000000000000000000000100000100000000000009060000130170000000000000000000000000000000000000000000000000000000000000000130000000000000001000000000100000001002000000054000000000000000006000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTA.................................................................................................241118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000800000010000000000000000000000000000000000000000000000000000000000000000010000000000000001000000000000000002011000001086000000100030000003000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATC...................................................................................................221118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000020110000001104000000001000000005000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................231112.0011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000030200000000811000002000000000014000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGT...................................................231105.0010500000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000060100001010000000000000000001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000077000000000000000005000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................21198.00980000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000004000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000001010000000082000000000010000003000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................23175.007500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000011000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000001010000000051000000100000000007000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGA...................................................23172.007200000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040200001012000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000001002000000044000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCT.......................................................19165.006500000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002000000000000000000000000000000000000000000000000000000000000100003050000000000000000000000000000000000000000000000000000000000000000360000000000000000000000000000000000021000000000000000000000000013000
...............................................................................................................GTCACCGGTCATGTCCTCC.........................................................................................................................19163.006300000000000000000000000400000000000000000000000000000000000000000000000000000000000010000001010010011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000180000000000000000025010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTT..................................................................................................24162.00620000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000010000000056000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAG.......................................................................................................18140.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000503000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000010000000021000000010000000000010000008000
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................23138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000031000000000000000001000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAA.....................................................22131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000204000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000019000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTG..................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000006000000000000000009000
..............................................................................................................TGTCACCGGTCATGTCCTCC.........................................................................................................................20125.0025000000000000000000000004000000000000000000000000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000008000000000000000007000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................22121.00210000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000018000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAA....................................................22114.0014000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010300000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000002000000003000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTATC................................................................................................25113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAAGC...................................................23113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................GAGCAAAGAAGTAGTATTT..................................................................................................19112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000010300000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000000000
....................................................................................................................................GCGAGCAAAGAAGTAGTATTT..................................................................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000009000000000000000000000
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................18110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000102000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000003000
................................................................................................................TCACCGGTCATGTCCTCC.........................................................................................................................1819.009000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................CGAGCAAAGAAGTAGTATTT..................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATG...................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000000001000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAGA...................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006200000000000000000000
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000
.....................................................................................................................................CGAGCAAAGAAGTAGTATT...................................................................................................1917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTT.....................................................................................................2017.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000004000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTGTG...............................................................................................2617.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAC....................................................................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000004000000000000000001000
..................................................................................................................................................................................ATAACTTCATTGGAAGCTAAG....................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000005000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAAGT...................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000
.......................................................................................................................................AGCAAAGAAGTAGTATTT..................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTC.................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000
.................................................................................................................................................................................TATAACTTCATTGGAAGCTAT.....................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000003000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTAA................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001000000003000000000000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTAGC......................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000002000000000000000000000
................................................................................................................................................................................ATATAACTTCATTGGAAGCTAT.....................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000
droSim2
GCGA-A--CATC--AAA---T-GTGTGA----------AT-----------------------------------------------------------GTAAACTCAATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTGGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM023

Head
M024

Male-body
M025

Embryo
M053

Female-body
O001

Testis
O002

Head
SRR553485

Ovary
SRR553486

Ovary
SRR553487

Ovary
SRR553488

Ovary
SRR618934

Ovary
V044

Embryo
SRR902008

Ovary
SRR902009

Testis
SRR1275487

Male larvae
SRR1275485

Male prepupae
SRR1275483

Male prepupae
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATT...................................................................................................2211194.001194030004811024112300641001
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAT....................................................................................................211871.00871020017930000200685000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGG....................................................221431.004310110235584436140024000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTA.....................................................................................................201270.0027000002253000020040000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTT..................................................................................................231225.0022502005210000200168000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTT..................................................................................................221139.0013903001300000000123000
.................................................................................................................................................................................TATAACTTCTTTGAAAGC........................................................181136.001360100133200000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGG.......................................................................................................181118.001180000116100001000000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTA......................................................20190.0090000088100000001000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAG.....................................................21183.0083000082100000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATT...................................................................................................21176.0076010080000000067000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCT.......................................................19163.0063030058100001000000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAG.....................................................22157.00570000231000000033000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGT...................................................23147.0047000047000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGT......................................................................................................19139.0039000038000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTT.................................................................................................24126.0026000000000000026000
...................................................................................................................................AGCGAGCAAAGAAGTGGTAT....................................................................................................20116.0016000030000000013000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTA..................................................................................................23116.0016000000000000016000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTT.................................................................................................23115.0015000000000000015000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGG....................................................23112.001200009000010002000
...................................................................................................................................AGCGAGCAAAGAAGTGGTA.....................................................................................................19110.001000006000000004000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTA......................................................2117.00701005000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAGG....................................................2117.00700007000000000000
................................................................................................................TCACTGGTCGTGTCCTCC.........................................................................................................................1816.00613002000000000000
................................................................................................................................................................................ATATAACTTCTTTGAAAG.........................................................1816.00600006000000000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGG....................................................1814.00400000000004000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAA....................................................................................................2114.00400000000000004000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTA.................................................................................................2414.00400000000000004000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCT.......................................................2014.00412001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTAA.................................................................................................2413.00300000000000003000
................................................................................................................................................................................ATATAACTTCTTTGAAAGC........................................................1913.00300003000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTTA................................................................................................2513.00300000000000003000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATA...................................................................................................2213.00300000000000003000
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGA...................................................2312.00200000000001001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTG.................................................................................................2312.00200000000000002000
...............................................................................................................GTCACTGGTCGTGTCCTCC.........................................................................................................................1912.00201001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTT.....................................................................................................2012.00200000000000002000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAG.....................................................2012.00200002000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTA..................................................................................................2212.00200000000000002000
...................................................................................................................................AGCGAGCAAAGAAGTGGTT.....................................................................................................1911.00100000000000001000
...............................................................................................................................................................................AATATAACTTCTTTGAAAGCTAG.....................................................2311.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTTA................................................................................................2411.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTAAA...................................................................................................2211.00100000000000001000
....................................................................................................................................GCGAGCAAAGAAGTGGTATTT..................................................................................................2111.00100000000000001000
........................................................................................................................................GCAAAGAAGTGGTATT...................................................................................................1611.00100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATCA..................................................................................................2311.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTTT................................................................................................2411.00100000000000001000
...................................................................................................................................AGCGAGCAAAGAAGTGGT......................................................................................................1811.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTGC................................................................................................2511.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTAA....................................................................................................2011.00100000000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTAGGT...................................................2211.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATAA..................................................................................................2311.00100000000000001000
.....................................................................................................................................CGAGCAAAGAAGTGGTAT....................................................................................................1811.00100001000000000000
.............................................................................................................................................................................CAAATATAACTTCTTTGAAAGC........................................................2211.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATTTA.................................................................................................2311.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATAAA.................................................................................................2411.00100000000000001000
................................................................................................................TCACTGGTCGTGTCCTCCA........................................................................................................................1911.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTAAA................................................................................................2511.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTTT................................................................................................2511.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGT.........................................................................................................1611.00100000000001000000
.....................................................................................................................................CGAGCAAAGAAGTGGTATTTGCG...............................................................................................2311.00100001000000000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGGT...................................................1911.00100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAGTGGTATTTGCG...............................................................................................2611.00100001000000000000
.....................................................................................................................................CGAGCAAAGAAGTGGTATTTGCGT..............................................................................................2411.00100001000000000000
...................................................................................................................................AGCGAGCAAAGAAGTGGTATA...................................................................................................2111.00100000000000001000
..................................................................................................................................................................................ATAACTTCTTTGAAAGCTA......................................................1911.00100001000000000000
..................................................................................................................................AAGCGAGCAAAGAAGTA........................................................................................................1711.00100000000000001000
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGA....................................................2311.00100000000000001000
..................................................................................................................................AAGCGAGCAAAGAAGTGC.......................................................................................................1820.50100000000001000000
..................................................................................................................................AAGCGAGCAAAGAAG..........................................................................................................1520.50100000000001000000
......................................................................................................................................GAGCAAAGAAGTGGT......................................................................................................1520.50100000000001000000
.....................................................................................................................................................................................ACTTCTTTGAAAGCTAGAA...................................................1950.20100000000000001000
droSec2
GCAGCGAGCATC--AAA---T-GAGTGA----------ATC--------------------AG------------------------------------GTAAACTCGATTGTCACTGGTCGTGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGCGTT--TC---C--AAGAACAAATATAACTTCTTTGAAAGCTAGGTGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM054

Female-body
V113

Male-body
V114

Embryo
V115

Head
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................2211247.001247211901144
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................231186.00186118113
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGG....................................................221105.00105486105
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21135.003513301
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................22118.001801710
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAG.....................................................2116.0060600
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................2015.0050500
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2113.0031101
................................................................................................................TCACTGGTCGTGTCCTCC.........................................................................................................................1812.0020011
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGT...................................................2312.0020110
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................1912.0020200
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................2212.0020200
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTAT....................................................................................................2211.0010100
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTAGG....................................................2311.0010100
...............................................................................................................GTCACTGGTCGTGTCCTCC.........................................................................................................................1911.0010010
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................2311.0010001
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2011.0011000
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................2411.0010100
................................................................................................................................................................................ATATAACTTCTTTGAAAGCTA......................................................2111.0010010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................2311.0010100
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGA....................................................2211.0010100
.................................................................................................................................................................................TATAACTTCTTTGAAAGCTAGGC...................................................2311.0011000
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTTG.................................................................................................2311.0010100
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................1811.0010100
droEre2
GAGT-G---------------------A----------ATCAGGA-AAAC-----------A-G-----------------------------------AACCACTAACTCAGCACTGGGCATGTCCTCCAAGCGAGCAAAGAAGTAGTATTTGTGTT--CC---A--AAAGTCAAATATAACTTTTTTGGAAGCTACGGGGATTTGCCCA----------------------------------------SizeHit CountTotal NormTotalM055

Female-body
M057

Embryo
V060

Head
V040

Embryo
V107

Male-body
V108

Head
GSM1528801

follicle cells
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATT...................................................................................................2213284.003284507029533190
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTT..................................................................................................2311614.0016142011014581430
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACG....................................................221178.001786050155120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTAT....................................................................................................21185.008500008410
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTT.................................................................................................24143.004300004120
..................................................................................................................................AAGCGAGCAAAGAAGTAGTA.....................................................................................................20110.001000001000
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTACGT...................................................2317.0070000700
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTACG....................................................2316.0060000420
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTA.................................................................................................2415.0050000500
...................................................................................................................................AGCGAGCAAAGAAGTAGTATT...................................................................................................2115.0052000300
..................................................................................................................................AAGCGAGCAAAGAAGTAGT......................................................................................................1914.0040000400
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTTG.................................................................................................2413.0030000300
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTACGT...................................................2412.0020000200
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTA......................................................2012.0020000200
.....................................................................................................................................CGAGCAAAGAAGTAGTATT...................................................................................................1912.0020000110
...................................................................................................................................AGCGAGCAAAGAAGTAGTATTT..................................................................................................2212.0020000200
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTTT.................................................................................................2511.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTG..................................................................................................2311.0010000100
.................................................................................................................................................................................TATAACTTTTTTGGAAGCTAC.....................................................2111.0010000100
................................................................................................................................................................................ATATAACTTTTTTGGAAGCTAC.....................................................2211.0010000100
...................................................................................................................................................................................TAACTTTTTTGGAAGCTACG....................................................2011.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTC..................................................................................................2311.0010000010
......................................................................................................................................GAGCAAAGAAGTAGTATT...................................................................................................1811.0010000100
....................................................................................................................................GCGAGCAAAGAAGTAGTATT...................................................................................................2011.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTA..................................................................................................2311.0010000010
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATTT..................................................................................................2411.0010000010
...................................................................................................................................AGCGAGCAAAGAAGTAGTAT....................................................................................................2011.0010000100
....................................................................................................................................GCGAGCAAAGAAGTAGTATTT..................................................................................................2111.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATTAA.................................................................................................2411.0010000100
..................................................................................................................................................................................ATAACTTTTTTGGAAGCTACG....................................................2111.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATA...................................................................................................2211.0010000100
.................................................................................................................................CAAGCGAGCAAAGAAGTAGTATT...................................................................................................2311.0010000100
..................................................................................................................................AAGCGAGCAAAGAAGTAGTATC...................................................................................................2211.0010000100

Generated: 10/20/2015 at 06:59 PM