dwi_557

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGGTAACAGCAACAGCGCCGGCAGCAAAATTTTGGGCGCAAATGGTCACGGTGAGTAGAAAAAAGAGAGACGCAATACGCAAGTAGAAAAAAAACAAAAAGAAAAACACTTTATCGACTGTTTTTATTATTATTATTGTGTGTTGTAATTTAGTTAAAACAGAACCCCAAAAAAAAGAAAAAAAAAATCACGTGTGTTTAAACAAAACACACTTCTAGGTTTTTTTTTTATTCGTTTCTGTTCTTTATTTT ***************************************************..................(((((((((((((((((.(((((((....((.(((...))).))...))))))).)).))))..))))))))))).......................********************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body
......................AGCAAAATTTTGGGCGCAAATG...............................................................................................................................................................................................................	22	0	1	1.00	1	0	0	1
..................CGGCAGCAAAATTTTGGGCGC....................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
....................................................................................................................................................TTTAGTTAAAACAGAACCCCA..................................................................................	21	0	1	1.00	1	1	0	0
.......AGCAACAGCGCCGGCAGCA.................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0
................................................................................................................................................................................................................................TTTTTATTCGTTTCTGTTCTT......	21	0	1	1.00	1	1	0	0
....AACAGCAACAGCGCCGGCAG...................................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0
....AACAGCAACAGCGCCGGC.....................................................................................................................................................................................................................................	18	0	2	1.00	2	1	1	0
.......................................AAATGGTCACGGTGAGTAGAA...............................................................................................................................................................................................	21	0	1	1.00	1	0	1	0
.............................................................................................................................................................................................................AACACACTTCTAGGTTTTTTT.........................	21	0	1	1.00	1	0	1	0
.....................................................AGTAGAAAAAAGAGAGACGCA.................................................................................................................................................................................	21	0	1	1.00	1	1	0	0
.........................ATAATTTTGGGCGCAAACGGC.............................................................................................................................................................................................................	21	3	5	0.20	1	0	0	1
...........................................................................................................................................................AAAACTGAACCCCAAGAAAAA...........................................................................	21	2	6	0.17	1	1	0	0
..................................................................................GTAGAAAACAAACAAAAAGT.....................................................................................................................................................	20	2	20	0.05	1	0	0	1
....GACAGCAGCAGCGCCGGCA....................................................................................................................................................................................................................................	19	2	20	0.05	1	0	0	1

ACCATTGTCGTTGTCGCGGCCGTCGTTTTAAAACCCGCGTTTACCAGTGCCACTCATCTTTTTTCTCTCTGCGTTATGCGTTCATCTTTTTTTTGTTTTTCTTTTTGTGAAATAGCTGACAAAAATAATAATAATAACACACAACATTAAATCAATTTTGTCTTGGGGTTTTTTTTCTTTTTTTTTTAGTGCACACAAATTTGTTTTGTGTGAAGATCCAAAAAAAAAATAAGCAAAGACAAGAAATAAAA ********************************************************************************..................(((((((((((((((((.(((((((....((.(((...))).))...))))))).)).))))..))))))))))).......................***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	M045 female body
.................................................................................................TTTCTTTTTGTGAAATAGCTG.....................................................................................................................................	21	0	1	1.00	1	1	0
.........................................................................................................TGTGAAATAGCTGACAAAAAT.............................................................................................................................	21	0	1	1.00	1	1	0
......................................................................GCGTTATGCGTTCATCTTTT.................................................................................................................................................................	20	0	1	1.00	1	1	0
.............................................................................................................................................................................................................................ACAAAAAATCAGCAAAGAC...........	19	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004511:3791832-3792082 +	dwi_557	TG-GTAACAGCAACAGCGCCGGCAGCAAAATTTTGGGCGCAAATGGTCACGGTGAGTAGAAAAAA-GAGAGAC------GCAATACGCAAGTAGAAAAA-----------------------------------------------A-------------------------------------AACAAAAAGA-----------------------------------------AAAACAC------------TTTATCGACTGTTTTT----ATTATTAT-------------------------------------------------------------------------------------------------------------------------------------TATTGTGTGTTGTAATTTAGTTA-----------------AAACAGAACCCCAAA--AAAAAGA------AAAAAAAAATCACGTGT--GTTTAAACAAAACA-CACTTCTAGGTTTTTTTTTTATTC-------------GTTTCTGTTCTTTATTT--T
droVir3	scaffold_12928:502682-502892 +		CA-ACAGCAACAGCAACAACA---ACAAT-----CGAAGCCAC--GTCACAGCGGCCAA----AA-T--------------------------AAA---TTGTGCTTTATTTTAAAAAT----------AAACGCACATCAAAATTCAAATGAAACACAAATA--AAATTGTTTTCA-ATTA-A----------------------ATAGA-----------------------AATATTTTTT-ATTGTTATTATTTTATTTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTG-----------------------------------------------------------------------------------CTGTTTTTGTTTTTCTTTGTTT-------------GCTTCTGTTTTTTTTTT--T
droMoj3	scaffold_6359:2721420-2721651 +		GCAAAAGAAACAAAAATCCAA---AAAAAA----AGAAGAAAAAAAACAAAAACAAAACGA-AACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT--------------------------------------------------------------TTTTTTATAAACATACAAA----AAAGTAAACAAAAA------------------TGCAGTT-TTGAATA--------------AATATGGTTTTTTGGATTTATTTCA-----------------AAACGCAACTAAAAA--AAAAAAA------AAACAAAAAACAAAAAC--CGCAAGACACAAAAAAAATTTTGTTTTAT-------TTCAAT-TTAC-----TTTTAAAATTTTTATTT--A
droGri2	scaffold_14853:9646001-9646168 -		AA-ACAAAAAAAAAACAACAA---ACAAA---GAGAAAACCAAAAGAAACAAACAT-------------------------------------TGA---TTGAAAATTATTCATTAAAGTGGAAAAAGAAAAAATAAAA--AAATAAAAAAAAAATAAAAACA--AAACAAAG----CA---------------TATTTAA-----ACAAATGCGTATGTGGACTTTTTTTTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATT--T
dp5	XR_group6:9790561-9790611 -		AG-----CAACTTTGGCAACA---GCAAAGTTGTGGGAGCAAATGGACACGGTGAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_61:65850-66178 -		AG-C----AACTTTGGCAACA---GCAAAGTTGTGGGAGCAAATGGACACGGTGAGTAGCGTAGG-AGACGAC-----------------------------------------GAA-----------------------------GA------------------GG---------GG-----GAAGAGAAGTTGCCCCAATCGCTTAGT-----------------------AGTTGGTTTTCTCCGTATCCGTGTCTCTCTCTCTCTTATGTTTCTTTGTGTCGCAA-T-------TTGAAAAATT-TTCCATGTGCG-TCTCTTGGTTTTGGTAGACAGACACA----AGCACACACAGAAA------------------TACATGC-ATGTGTA--------------CATAT--------------------ATT-TTATGTTTATTTTAGCCAAAACTATGGC--CT--GGT------CAGAGGGAATCACGTGTGTGTGG----------------------------TTTTTCCGCT-TTAA----TTTTTACACTCTTGGCTT--T
droAna3	scaffold_13337:12777878-12777986 -		TG-GGAATAAAAACAATGCTG---GCAAAATTGTGGGCGCAAATGGACATGGTAAGTAGCCAAGA-A--------------------------GAAGAA---------------GAACA----------CGACGAAC----------------------------------------AAGAG-AATTCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAGAGA------------------------------------------------------------------------------------
droBip1	scf7180000396589:1245302-1245399 +		CC-G-AATAAAAACAACGCTG---GCAAAATTGTGGGCGCAAATGGACATGGTAAGTAGCGATGTGTTG-GAA--------------------GAA--------------------------------------------------GA------------AGA--AG----------AAGAG-AATACAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA-------------------------------------------------------------------------------------------------
droKik1	scf7180000302686:60899-61188 +		CA-A---CAAAAACAATGCTG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTATTCAAGA-A--------------------------GAAGAG---------------AAGGA----------GAAGAGACAG--AAAAGGAGAAGAAGTAGGAACTGCAG-------------------AGAGAGGTTGCTGTA-----GCAAA-----------------------AGTTAATTTTCTTCGCCTCCGTCTTGTTGTGTGTTT----CTTCTTTGTGTCGCAA-TGCTGTATTCGCAAAATT-TTACATGTGCCTTATGCTGAT----------------------------------------------------------G-----------------------------------------------------CCTGTTATTTTTTGT------------------TGTTCAAATTTCCAAAAATCACGTGT--GTTG----------------------------TTTTTCCGCCAAACATTAAA-----------TTTTTT--T
droFic1	scf7180000453929:1853315-1853594 -		TG-GTGGCAAAAACAACGCAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---A-------T--AAAAAAAA-----------------------------------------------------------------------------------------------------AACGAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T-------TTGCGCAATTTTTCCATGTGCTATAAA--------------------TGTATATATA-ATATA----------------TATATGTA----C-ATGTGT----------------ATAT--------------------ATTATCCGAGATGTTTTTGCCAGATCTTTTGG-GAA--TATCC----CTCTACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-A-CA----T--------------TTT--T
droEle1	scf7180000491268:1255222-1255513 +		TG-G---TAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---C-------TAAAAAAAAAA-----------------------------------------------------------------------------------------------------AATCAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T-------TTGCGCAATC-TTCCATGTGCTATA----CATA------------TCTA----TGTATGTATG----------------TATATATATA-----TGTGTATATATATATA----GATAT--------------------ATCCTCCCGTTTGTTTTTGCCAAGTCTTTTGGGGAA--TATCC----GTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACG-------------------TTT--T
droRho1	scf7180000768851:41449-41729 +		TG-GTGGCAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---C----------AAAAAAAA-----------------------------------------------------------------------------------------------------AACCAAGAGTTGC-T-------GCAGA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----C-TCTTTGTATGGCAA-T-------TTGCGCAATC-TTCCATGTGCTATA----CATA------------TTTA------------T-----GTATATGTGAGGTATA-----------TATGT----------------ATAT--------------------ATCCTCCCATTTGTTTTTGCCAGATCTTTTGA-GAA--TATCC----CTCCACATATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACA----TT----------TTTTTTTGG
droBia1	scf7180000302193:3265700-3265768 +		TG-G---CAAAAGCAACACGG---GCAAAGTTGTGGGCGCAAACGGACATGGTGAGTAGAG---C----------AGGCGAGA-----------------------------------------------------------------------------------------------------AACGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415868:467119-467415 +		TG-GTGGCAAAAACCACACGG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAA--TGAGTGGGG-------------------------TAA-----------------------------------------------AA------------ATA--AAAC-------G-ATAA-AACCGAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T------TTTGCGCAATT-TTCCATGTGCTATATC--------------------TATACA------TATG----------------TATATGTATATGCGATATGT----------------ATTT--------------------ATCCTCCCGTTTGTTTTCGCCAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AGAA----T--------------TTT--T
droEug1	scf7180000409466:3532827-3533118 +		TG-GTGGAAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGGCATGGTGAGTAAAG---CAT--------AAAAAAGA-----------------------------------------------------------------------------------------------------AACGAAAAGTTGCCT-------GTAAA-----------------------AGTGGCTTTTCTTCGTCTCCACCTTCGTCTGTGTTT-----TTCTTTGTGTGGCAA-T-------TTGCGCAATT-TTCCATGTGCTATATC--------------------TA------------T-----ATATATGAGATGTAT-TATAT------------TATATATAAACATATATGT--------------------AGTTTTCCGTTTGTTATTGCAAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACA----TT----------TTTTTT--T
dm3	chr3L:5762990-5763301 +		TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGTGTAAAGAT------------------------------------------------------------------------ACAACAA--------------AA---------TGTAA-AATCCAAAAGTTGCTT-------GCAAA-----------------------AGTGGCTTTT-TCCGTCTGCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-TT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T-TA------------T-----ATATATAAGATGTATATATACTTAA-ATGTAT--------------TTATGT--------------------ATCGTCCCGTTTGTTTTTGCCAAATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT-----------TTTTTT--T
droSim2	3l:5676023-5676321 +	dsi_9043	TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGAGTAAAGAT-------------------------------------------A---------------------------TACAACAA--------------A----------TATAA-AATCCAAAAGTTGCTT-------GCAAA-----------------------AGTGGCTTTT-TCCGTCTGCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-TT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T--A----------TATA----------------TATATATATA-----TATGTA--------------TATGT--------------------TTCGTCCCATTTGTTTTTGCCAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT-----------TTTTTT--T
droSec2	scaffold_2:5699856-5699926 +		TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGAGTAAAGAT------------------------------------------------------------------------ACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3	3L:6332468-6332778 +		TG-GTGGCAAAAACAATACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---CGTAAAGAT------------------------------------------------------------------------ACAGCAA--------------AA---------TATAAAAATCCAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTTTCCGTCTGCGTCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAACTT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T--A------------T-----ATATATAAGATGTATATATATATAC-ATTTAT--------------ATATGT--------------------ATTATCCCGTTTGTT-TTGCCTGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT--------------TTT--T
droEre2	scaffold_4784:8453580-8453662 +		TG-GTGGCAAAAACAATACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---AGTAAAGCT------------------------------------------------------------------------ACAACAA--------------AG---------TATAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TG-GTAACAGCAACAGCGCCGGCAGCAAAATTTTGGGCGCAAATGGTCACGGTGAGTAGAAAAAA-GAGAGAC------GCAATACGCAAGTAGAAAAA-----------------------------------------------A-------------------------------------AACAAAAAGA-----------------------------------------AAAACAC------------TTTATCGACTGTTTTT----ATTATTAT-------------------------------------------------------------------------------------------------------------------------------------TATTGTGTGTTGTAATTTAGTTA-----------------AAACAGAACCCCAAA--AAAAAGA------AAAAAAAAATCACGTGT--GTTTAAACAAAACA-CACTTCTAGGTTTTTTTTTTATTC-------------GTTTCTGTTCTTTATTT--T	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................AGCAAAATTTTGGGCGCAAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................CGGCAGCAAAATTTTGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGTTA-----------------AAACAGAACCCCA............................................................................................................	21	1	1.00	1	0	1	0	0	0
........AGCAACAGCGCCGGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTATTC-------------GTTTCTGTTCTT........	21	1	1.00	1	0	1	0	0	0
.....AACAGCAACAGCGCCGGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.....AACAGCAACAGCGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	1	0	1	0
........................................AAATGGTCACGGTGAGTAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA-CACTTCTAGGTTTTTTT........................................	21	1	1.00	1	0	0	0	1	0
......................................................AGTAGAAAAAA-GAGAGAC------GCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0

droVir3

CA-ACAGCAACAGCAACAACA---ACAAT-----CGAAGCCAC--GTCACAGCGGCCAA----AA-T--------------------------AAA---TTGTGCTTTATTTTAAAAAT----------AAACGCACATCAAAATTCAAATGAAACACAAATA--AAATTGTTTTCA-ATTA-A----------------------ATAGA-----------------------AATATTTTTT-ATTGTTATTATTTTATTTTGTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTG-----------------------------------------------------------------------------------CTGTTTTTGTTTTTCTTTGTTT-------------GCTTCTGTTTTTTTTTT--T	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTTTGTTTTTCTTT.....................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ACAGCAACAGCAACAACA---ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.A-ACAGCAACAGCAACAACA---ACAAT-----..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTT------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTG-----------------------------------------------------------------------------------CTGTTTT................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAAAAGAAACAAAAATCCAA---AAAAAA----AGAAGAAAAAAAACAAAAACAAAACGA-AACAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT--------------------------------------------------------------TTTTTTATAAACATACAAA----AAAGTAAACAAAAA------------------TGCAGTT-TTGAATA--------------AATATGGTTTTTTGGATTTATTTCA-----------------AAACGCAACTAAAAA--AAAAAAA------AAACAAAAAACAAAAAC--CGCAAGACACAAAAAAAATTTTGTTTTAT-------TTCAAT-TTAC-----TTTTAAAATTTTTATTT--A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

AA-ACAAAAAAAAAACAACAA---ACAAA---GAGAAAACCAAAAGAAACAAACAT-------------------------------------TGA---TTGAAAATTATTCATTAAAGTGGAAAAAGAAAAAATAAAA--AAATAAAAAAAAAATAAAAACA--AAACAAAG----CA---------------TATTTAA-----ACAAATGCGTATGTGGACTTTTTTTTATTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATT--T	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

AG-----CAACTTTGGCAACA---GCAAAGTTGTGGGAGCAAATGGACACGGTGAGTAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............TTGGCAACA---GCAAAGTTGTGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GAGCAAATGGACACGGTGAGT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............GCAACA---GCAAAGTTGTGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................GTGGGAGCAAATGGACACGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........TTTGGCAACA---GCAAAGTTGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................TGGGAGCAAATGGACACGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AG-C----AACTTTGGCAACA---GCAAAGTTGTGGGAGCAAATGGACACGGTGAGTAGCGTAGG-AGACGAC-----------------------------------------GAA-----------------------------GA------------------GG---------GG-----GAAGAGAAGTTGCCCCAATCGCTTAGT-----------------------AGTTGGTTTTCTCCGTATCCGTGTCTCTCTCTCTCTTATGTTTCTTTGTGTCGCAA-T-------TTGAAAAATT-TTCCATGTGCG-TCTCTTGGTTTTGGTAGACAGACACA----AGCACACACAGAAA------------------TACATGC-ATGTGTA--------------CATAT--------------------ATT-TTATGTTTATTTTAGCCAAAACTATGGC--CT--GGT------CAGAGGGAATCACGTGTGTGTGG----------------------------TTTTTCCGCT-TTAA----TTTTTACACTCTTGGCTT--T	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATGGC--CT--GGT------CAGA.......................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................ACA---GCAAAGTTGTGGGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAACTATGGC--CT--GGT------CAG........................................................................................	21	1	1.00	1	0	1	0	0	0	0

droAna3

TG-GGAATAAAAACAATGCTG---GCAAAATTGTGGGCGCAAATGGACATGGTAAGTAGCCAAGA-A--------------------------GAAGAA---------------GAACA----------CGACGAAC----------------------------------------AAGAG-AATTCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAGAGA------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................TGCTG---GCAAAATTGTGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....AATAAAAACAATGCTG---GCAAAA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........AAACAATGCTG---GCAAAATTGTGGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................ATTGTGGGCGCAAATGGACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................AAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA------AAAGAGA------------------------------------------------------------------------------------	18	20	0.05	1	0	0	0	1	0	0

droBip1

CC-G-AATAAAAACAACGCTG---GCAAAATTGTGGGCGCAAATGGACATGGTAAGTAGCGATGTGTTG-GAA--------------------GAA--------------------------------------------------GA------------AGA--AG----------AAGAG-AATACAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAAA-------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA-A---CAAAAACAATGCTG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTATTCAAGA-A--------------------------GAAGAG---------------AAGGA----------GAAGAGACAG--AAAAGGAGAAGAAGTAGGAACTGCAG-------------------AGAGAGGTTGCTGTA-----GCAAA-----------------------AGTTAATTTTCTTCGCCTCCGTCTTGTTGTGTGTTT----CTTCTTTGTGTCGCAA-TGCTGTATTCGCAAAATT-TTACATGTGCCTTATGCTGAT----------------------------------------------------------G-----------------------------------------------------CCTGTTATTTTTTGT------------------TGTTCAAATTTCCAAAAATCACGTGT--GTTG----------------------------TTTTTCCGCCAAACATTAAA-----------TTTTTT--T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TG-GTGGCAAAAACAACGCAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---A-------T--AAAAAAAA-----------------------------------------------------------------------------------------------------AACGAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T-------TTGCGCAATTTTTCCATGTGCTATAAA--------------------TGTATATATA-ATATA----------------TATATGTA----C-ATGTGT----------------ATAT--------------------ATTATCCGAGATGTTTTTGCCAGATCTTTTGG-GAA--TATCC----CTCTACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-A-CA----T--------------TTT--T	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TG-G---TAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---C-------TAAAAAAAAAA-----------------------------------------------------------------------------------------------------AATCAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T-------TTGCGCAATC-TTCCATGTGCTATA----CATA------------TCTA----TGTATGTATG----------------TATATATATA-----TGTGTATATATATATA----GATAT--------------------ATCCTCCCGTTTGTTTTTGCCAAGTCTTTTGGGGAA--TATCC----GTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACG-------------------TTT--T	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TG-GTGGCAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---C----------AAAAAAAA-----------------------------------------------------------------------------------------------------AACCAAGAGTTGC-T-------GCAGA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----C-TCTTTGTATGGCAA-T-------TTGCGCAATC-TTCCATGTGCTATA----CATA------------TTTA------------T-----GTATATGTGAGGTATA-----------TATGT----------------ATAT--------------------ATCCTCCCATTTGTTTTTGCCAGATCTTTTGA-GAA--TATCC----CTCCACATATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACA----TT----------TTTTTTTGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG-G---CAAAAGCAACACGG---GCAAAGTTGTGGGCGCAAACGGACATGGTGAGTAGAG---C----------AGGCGAGA-----------------------------------------------------------------------------------------------------AACGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TG-GTGGCAAAAACCACACGG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAA--TGAGTGGGG-------------------------TAA-----------------------------------------------AA------------ATA--AAAC-------G-ATAA-AACCGAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTCTTCGTCTCCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-T------TTTGCGCAATT-TTCCATGTGCTATATC--------------------TATACA------TATG----------------TATATGTATATGCGATATGT----------------ATTT--------------------ATCCTCCCGTTTGTTTTCGCCAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AGAA----T--------------TTT--T	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TG-GTGGAAAAAACAACACAG---GCAAAGTTGTGGGCGCAAATGGGCATGGTGAGTAAAG---CAT--------AAAAAAGA-----------------------------------------------------------------------------------------------------AACGAAAAGTTGCCT-------GTAAA-----------------------AGTGGCTTTTCTTCGTCTCCACCTTCGTCTGTGTTT-----TTCTTTGTGTGGCAA-T-------TTGCGCAATT-TTCCATGTGCTATATC--------------------TA------------T-----ATATATGAGATGTAT-TATAT------------TATATATAAACATATATGT--------------------AGTTTTCCGTTTGTTATTGCAAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GTTG----------------------------TTTTTCCGCT-AACA----TT----------TTTTTT--T	Size	Hit Count	Total Norm	Total
No Reads

dm3

TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGTGTAAAGAT------------------------------------------------------------------------ACAACAA--------------AA---------TGTAA-AATCCAAAAGTTGCTT-------GCAAA-----------------------AGTGGCTTTT-TCCGTCTGCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-TT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T-TA------------T-----ATATATAAGATGTATATATACTTAA-ATGTAT--------------TTATGT--------------------ATCGTCCCGTTTGTTTTTGCCAAATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT-----------TTTTTT--T	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................TGTGTTT----CTTCTTTGTGTGGC................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................TGGGCGCAAATGGACATGGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TTGTGGGCGCAAATGGACATG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................GGCGCAAATGGACATGGTGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................................................................................................................................................................CCTTCGTCTGTGTTT----CTTCTTT.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TTGTGTGGCAA-TT-----TTTGCGCA..............................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............AATACAG---GCAAACTTGTGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................TGAGTACAC-TGTGTAAAGAT------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................GTGGGCGCAAATGGACATGGTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AG---GCAAACTTGTGGGCGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................TGTAT--------------TTATGT--------------------ATCGTCCCG.................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droSim2

TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGAGTAAAGAT-------------------------------------------A---------------------------TACAACAA--------------A----------TATAA-AATCCAAAAGTTGCTT-------GCAAA-----------------------AGTGGCTTTT-TCCGTCTGCGCCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAA-TT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T--A----------TATA----------------TATATATATA-----TATGTA--------------TATGT--------------------TTCGTCCCATTTGTTTTTGCCAGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT-----------TTTTTT--T	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................CCGTCTGCGCCTTCGTCTGTG.....................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................GTGGCTTTT-TCCGTCTGCGCC...............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATAA-AATCCAAAAGTTGCTT-------G.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................T-------GCAAA-----------------------AGTGGCTTTT-TCCGTT.....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCCATTTGTTTTTGCCAGA..................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................ACATGGTGAGTACAC-TGAGTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTGCTT-------GCAAA-----------------------AGTGGCA...............................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTTTTGCCAGATCTTTTGG-GAA--TA..................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................ATGGACATGGTGAGTACAC-TG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................T-TCCGTCTGCGCCTTCGTCTG.......................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................GCAAACTTGTGGGCGCAAATGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................GTCTGTGTTT----CTTCTTTGTG....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................ACAG---GCAAACTTGTGGGCGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AAACTTGTGGGCGCAAATGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTTTGCCAGATCTTTTGG-.........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CGTCTGTGTTT----CTTCTTTGTG....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................ACAG---GCAAACTTGTGGGCGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

TG-G---CAAAAACAATACAG---GCAAACTTGTGGGCGCAAATGGACATGGTGAGTACAC-TGAGTAAAGAT------------------------------------------------------------------------ACAACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................CTTGTGGGCGCAAATGGACAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0

droYak3

TG-GTGGCAAAAACAATACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---CGTAAAGAT------------------------------------------------------------------------ACAGCAA--------------AA---------TATAAAAATCCAAAAGTTGCCT-------GCAAA-----------------------AGTGGCTTTTTTCCGTCTGCGTCTTCGTCTGTGTTT----CTTCTTTGTGTGGCAACTT-----TTTGCGCAATT-TTCCATGTGCTATATCTTCATA------------T--A------------T-----ATATATAAGATGTATATATATATAC-ATTTAT--------------ATATGT--------------------ATTATCCCGTTTGTT-TTGCCTGATCTTTTGG-GAA--TATCC----CTCCACAAATCACGTGT--GATG----------------------------TTTTTCCGCA-AACAT--AT--------------TTT--T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATCCCGTTTGTT-TTGCCTGA..................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CAAAGTTGTGGGCGCAAATGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................................................................GGCTTTTTTCCGTCTGCGTCT..............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
TG-GTGGCAAAAACAATACAG---G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-TTGCCTGATCTTTTGG-.........................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TG-GTGGCAAAAACAATACAG---GCAAAGTTGTGGGCGCAAATGGACATGGTGAGTAAAG---AGTAAAGCT------------------------------------------------------------------------ACAACAA--------------AG---------TATAAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................ATGGACATGGTGAGTAAAG---AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................AAAGTTGTGGGCGCAAATGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
...............ATACAG---GCAAAGTTGTGGGCGCAAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................GTGGGCGCAAATGGACATGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0

dwi_557

scf2_1100000004511:3791882-3792032 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.8	-14.8	-14.7