ID:

dwi_547

 Coordinate:

scf2_1100000004511:3320429-3320707 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-51.4 -51.3 -51.3

Flybase annnotation

CDS [Dwil\GK16930-cds]; exon [dwil_GLEANR_17273:6]; CDS [Dwil\GK16930-cds]; exon [dwil_GLEANR_17273:7]; intron [Dwil\GK16930-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
(CA)nSimple_repeatSimple_repeat+
AT_richLow_complexityLow_complexity+
(TA)nSimple_repeatSimple_repeat+
mature
  1. dwi_547  scf2_1100000004511:3320542-3320566 -
  2. scf2_1100000004511:10725036-10725060 +
  3. scf2_1100000004515:1678717-1678741 +
  4. scf2_1100000004515:2839081-2839105 +
  5. scf2_1100000004515:2922720-2922744 +
  6. scf2_1100000004540:800155-800179 +
  7. scf2_1100000004540:1928658-1928682 +
  8. scf2_1100000004768:1677540-1677564 -
  9. scf2_1100000004837:1190508-1190532 -
  10. scf2_1100000004837:1620606-1620630 -
  11. scf2_1100000004902:10908122-10908146 -
  12. scf2_1100000004909:4428754-4428778 -
  13. scf2_1100000004909:5968660-5968684 +
  14. scf2_1100000004909:6155718-6155742 +
  15. scf2_1100000004909:9193704-9193728 -
  16. scf2_1100000004909:11513264-11513288 -
  17. scf2_1100000004909:11624650-11624674 +
  18. scf2_1100000004921:714797-714821 +
  19. scf2_1100000004963:3014397-3014421 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTTATTATTAATCGGCCAAATACACCAAAGACGCTGCTTGAGAATACAGGTGAGTGTGCCTACATATACATATATATATATTTATATATGAATATTTAAATGTGTGAGTGTGTGAATGTAAGCCCATTTATTTATTATAATTGTCATAGAAATTAACTTAAATTATATATATATATAATGATAATGATATGTGTGTGCGTGCGTGTGTGTGTGTGCGAATGTCTGTATTATTACTTATTAAATTATTCAGTTGATTTATTTATATATTTAAACAAAAACCAAAAAAAAAAGAAAATTCATTTTTTTCTATTGTTTATTTTTTTTATAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
**************************************************(((((((.((.(((((.(((((((.((((((((((.(((....))).)))))))))).))))))).))))).)).)))))))......(((.(((.(((((((((((((..(((.......(((..((((((((..(((((.(((((((((((....))))))))))).)))))..))))))))..)))......))).))))))))..)))))))).)))...........((((((((((((((.......))))))........))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total V119
head
 V118
embryo
 M020
head
 V117
male body		 M045
female body
.............................................................................................................................................................................................................................................................................................................................................AACAATCGGTCGTCTAGGTTATGTGT.................... 26 0 1 1.00 1 0 0 0 1 0
.................CAAATACACCAAAGACGCTGCTT................................................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0
.......................................................................................................................................................................................................................................................................................................................................AGCAATAACAATCGGTCGTCTA.............................. 22 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................ATAACAATCGGTCGTCTAGGT........................... 21 0 1 1.00 1 0 0 1 0 0
.............................ATCCGCTGCTTGAGAATAGA.......................................................................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 1
...............................................................................................................................................................................................GTGTGTGCGTGCGTGTGTGTGTGTG................................................................................................................................................................... 25 0 19 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................TGTCGTCTAAGTTGTGTGTG................... 20 3 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GCAATAATAATTAGCCGGTTTATGTGGTTTCTGCGACGAACTCTTATGTCCACTCACACGGATGTATATGTATATATATATAAATATATACTTATAAATTTACACACTCACACACTTACATTCGGGTAAATAAATAATATTAACAGTATCTTTAATTGAATTTAATATATATATATATTACTATTACTATACACACACGCACGCACACACACACACGCTTACAGACATAATAATGAATAATTTAATAAGTCAACTAAATAAATATATAAATTTGTTTTTGGTTTTTTTTTTCTTTTAAGTAAAAAAAGATAACAAATAAAAAAAATATCGTTATTGTTAGCCAGCAGATCCAATACACACGGGTCAACTTCACCGAGGA
**************************************************(((((((.((.(((((.(((((((.((((((((((.(((....))).)))))))))).))))))).))))).)).)))))))......(((.(((.(((((((((((((..(((.......(((..((((((((..(((((.(((((((((((....))))))))))).)))))..))))))))..)))......))).))))))))..)))))))).)))...........((((((((((((((.......))))))........))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
..........TGAGCTGGTTTATGTGGTTT............................................................................................................................................................................................................................................................................................................................................................. 20 2 3 0.33 1 1
..................................................................................................................................................................................................................................................................TAAATATATAAACGTGTTTTTAG.................................................................................................. 23 3 10 0.10 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:3320379-3320757 - dwi_547 CGTTATTATTAATCGGCCAAATACACCAAAGACGCTGCTTGAGAATACAGGTGAGT--------------------------------G---------------------------------------------------------------------------------------------------TGC-----------CTAC-------------------------------------------ATATACATATATATAT-----------------------------------------------A----TTTATATAT-------GAATATTTAAATGTGTGAGTGTGTGAATGTAAGCCCATTTATTTATTATAATTGTCATAGAAATTAACTTAAATTATATATATATATAATGATAATGATATGTGTGTGC----------------------------------------------------------------GTGCGTGTGTGTGTGTGCG-AA-------TGTCTGTA--------------T-------TAT-TACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAATTATT--CAG-------TTGATT----TATTTATATATTTAAACAAAAACCAAAAAAAAAAGAAAATTCATTTT-TTTCTATTGTTTATTTTTTTTATAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droVir3 scaffold_13049:10507497-10508011 + dvi_19395 CATTATCATCAATCGCCCGAATACGCCCAAAACGCTGCTGGAGAATACAGGTGAGTAGAGGCAATAAGGTGTGTGTGCTATGTGCATTCGTTA---------------------------------------------------T---AAAA-----------G---------CTGTATGC-AATGTATATGCGAAATATTT--------------------------------------------------------------------------------------------------------------A----TAT-------------G------------TTTG------TGTGCG--T-------------------------------------------------------------------ATGTGTGTACGTA------------------------------------------------------------CGTTTGTACATATGTATGTGCGC-------TATCTAAACATTTATTTCTGGTATCATTTAA-------CGTTGCATGTGACTCATTGTCGCCAATTGCAACAACAATAACAATAA---TAAACAAAACAT------------------------A---TGAACAT-------------CACAC----ACCATCATTGT------GTAT------TGTA-A----------------GTTC----TTGTGAATGTT-CA-ACTTTTCGTTGTGTG--TAATTAATTGAA--------A-ACG----------AATCGA----T-----------GC---AATAGAAAAACACACTAAAAACCAAGCAAATACCAAATACAAAT-CCATA----AA----ATAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droMoj3 scaffold_6680:10269661-10270195 - dmo_2433 CGTCATCATCAATCGCCCGAATACGCCCAAAACGCTGCTGGAGAATACAGGTGAGT--------------------------------G--------------------------------------AA------------TGTT---CAGA-----------A-------------------------ATGCATTCTGT--------------------GAATGATATGTTTATACATATATACACATACAAAT-CATATGTGTATATATATATGCATATACATCAGCAGTATGCAAATAATTGTAT----G----TATATGTAT-------G--------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------TCTGAACATAAGTATGTGTG----C-------TGACTGAACATTTGTTTCTGATATCATTTAC-------CGTTGCATGTGACGCATTGTCGTC---------AGCTGCAAAAATCCAGGAAAATAGAAA-TCATAATAATAACAATATGAAAAACA---TGCATAA-------------CACAT----ACT-TCATT--------GTAT------TGTC-G----------------ATTTGTCAATGTGAATGTTTCAAACTTATTGCTGTATG--TAATTAATTGAA--------GCGCGTCTCG-----AATCAATCAATTAAGAACATGCGC---A-----------A--------------------------------TCAAA----CA----ATAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droGri2 scaffold_15110:8736231-8736865 - CATCATCATCAATCGCCCGAATACGCCTAAGACTCTGCTGGAGAATACAGGTGCGTACA-----------------------------CAT-T-AAT---ATAATCGG-ATG-----CTAAGCA---AA------------TTAC---ATAA-----------A---------CTGTATGC-AATGTATATGCAGATATTCTATATATATATAGTTTTATGTATG---TGTTTATGTATATATATATATATATATATATATATAT-----------------------------------------------A----TATATATAT-------GTATATATATATGTGTGTGTTTGTGTCTGT-----------------------------------------------------------------------------A---------------------------CATATATT--------------------TATGTACA--CAATGTATGTGCGCAAGCT-ATTTACGACAGTCTAAACATTTGCTTCTGGTTTCATTTAA-------TGATGCATGTGACGCATTGTCGCCAATTGCAACAAAA-------ACC---------AAAA-TAATAATAACAACAACAACAAAAGCATATTGCATAAATACTAATATATACACATATATAC--TAATT--------ATAT------TGTC-A----------------ATAT----TGATGTATGTT-CAAATTTATTGTTGTATATGCCATTAATCGATTGAATAGAAAACGTTTCAATCAAAATCAATCAATTCGAAACAA--AC---A-----------AACCAA----------------AACCAA---A-CCAAA----CA----ACAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
dp5 XR_group3a:209668-210184 + dps_2888 CGTTATAATCAATCGCCCGAATACGCCCAAGACACTGCTGGAGAACACAGGTGAGT--------------------------------GGTTC-GAG---GAGGCTC-------------GTCATTGATTTCA-------------------AAAGAGAAGCTG---------CTGTTTAAATATATATATATG-----------TGTATATATATGC---------------------------------------------------------TCATATA--------------------------TGTG-TGTA---------TG----------------------------TATATG--A-------------------------------------------------------------------ACACATGTATATGTGTATCAATG-ATATTTATTTAACATATATC---------------------------TCTGTATGTATGTGTGTATGTG-GAA------TATTTGAACATTTGTTTCTGTCTTATTTTCTGT-CTCAAAACGAACA------------------------ATCAA-AACGAACC---GAAATCCATTCACATACCCGT----------ACCACA---TGCATA----------------------------------GA-TATAGAT------ATTCTAAGAAATACGATAATTTATATA----------------------------------------------------------------------------TCAATTTGAGTGTG--T--ACT-----------ATC-------------------AATCGA---A-TCGAATCTA-AATATCTGT----GTTAATTATTGATTTATTTCTAGTTAATATATGATTTTCTGATTTCCA-----------------------------------CTTT-TGTTTTCTGTTCA------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCGGTTGAAGTGGCTCCT
droPer2 scaffold_23:212426-212942 + CGTTATAATCAATCGCCCGAATACGCCCAAGACACTGCTGGAGAACACAGGTGAGT--------------------------------GGTTC-GAG---GAGGCTC-------------GTCATTGATTTCA-------------------AAAGAGAAGCTG---------CTGTTTAAATATATATATATG-----------TGTATATATATGC---------------------------------------------------------TCATATA--------------------------TGTA-TGTA---------TG----------------------------TATATG--A-------------------------------------------------------------------ACACATGTATATGTGTATCAATG-ATATTTATTTAACATATATC---------------------------TCTGTATGTATGTGTGTATGTG-GAA------TATTTGAACATTTGTTTCTGTCTTATTTTCTGT-CTCAAAACGAACA------------------------ATCAA-AACGAACC---GAAATCCATTCACATACCCGT----------ACCACA---TGCATA----------------------------------GA-TATAGAT------ATTCTAAGAAATACGATAATTTATATA----------------------------------------------------------------------------TCAATTTGAGTGTG--T--ACT-----------ATC-------------------AATCGA---A-TCGAATCTA-AATATCTGT----GTTAATTATTGATTTATTTCTAGTTAATATATGATTTTCTGATTTCCA-----------------------------------CTTT-TGTTTTCTGTTCA------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCGGTTGAAGTGGCTCCT
droAna3 scaffold_13337:20739799-20740176 - CATCATTATCAACCGCCCCAACACGCCCAAGACTCTGCTGGAGAACACAGGTGAGT--------------------------------TGGTC-GAG---CTTATC--------------------------------------------GA-----------A---------CTAT--------ATAT--AAGTTATATGT----CTATATATAT----------------------------------------------TA-------------------------------------------------CGTA---------CCTATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGCGTGTATGTG-GA-------GCTCTGAACATTTGTTTCCGTTTTAGTTTATGT-TACTTGTTGCATGGAA---------------------GGCAGCAACGAAAC---AAAATCGAACTTCATTCCCAT----------ACAACA---TGCATAG-------------CATA----------------GAATTTAGAT------TACT-GAGAATCGA---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATGTG----CTATTGATTTATT--CAG-------TTGATT----TATTTCTA-----------------------------------CTTA-TTTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droBip1 scf7180000396707:676312-676736 + CGTCATAATCAACCGCCCCAATACGCCCAAGACTCTGCTGGAGAACACAGGTGAGT--------------------------------TGTTG-CAG---CCGAT------TTTTCG----------GC------------T-CG---CCGA-----------GCTATACGGGCTGT--------------ACGTTGTATGT----CT--------------------------------------------------------------------------------------------------------A----TATAC----CCAATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGCGTGTATGTG-GA-------GCTCTGAACATTTGTTTCTGTTTTAGTTTGTGT-TACTTGTTGCATGGTA---------------------AGCAGCAACGAAAC---CAAATCGAAC-TCATTCCCAT----------ACAACA---TGCATT----------------------------------GAATTTGGAT------TACC-GATAATCGC---CATTGACAT-----------------------------------------------------------------------------T-AATCGGAGTTTA--GCAACG-----------ATC-------------------AGTCAA---A-GCGAT---A-T----ATATATGTG----GTATTGATTTATT--CAG-------TTGATT----TATTTCTT-----------------------------------CTTA-TTTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droKik1 scf7180000302334:713451-713838 + TGTCATCATCAATAAACCCAACACGCCAAAGACACTGCTGGAGAATACAGGTAAGG------------------------------ATCGTTTTG-GCGGCTGATAGAT--------------------CTCA------------------------------A---------CTCT--------ATATCT-----------TTAC-------------------------------------------ATGTATATATATATAT-----------------------------------------------C----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCAGTATGTATGTGTGTATGTG-GA-------TCTCTGGACATTTGTTTCTGTTTTAGTTTGTGTTTACCTGTTGCATGAAG---------------------AGCAGCAACGAAAC---AAAATCGAACCTCATTCCCAT----------ACAACA---TACATA----------------------------------GAATTTA------------T-GAGA--------------------------------------------------------------------------------------------------------------------------------------------------------GAA---AGGGGTAC---CT----ATAAGTGTG----ATATTGATTTATT--CAG-------TTGATT----TATTTCTCT----------------------------------CTTACTTTTTTCTGTTTC----TTTTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droFic1 scf7180000453929:1396848-1397270 - CATTATCATCAACCGGCCGAACACTCCCAAGACTCTGCTGGAGAATACAGGTGAGC--------------------------------CGTTT-GGG---CTGATCCG-GTTAATCG----------AA------------TTGC----CGG-----------G---------ATGCCTCAAAACTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATCT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATGA-G---------------------AGCAGCAACGAAAC---GAAATCGAACATCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-T--AGAC------AGTT-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCAAGTGTA--GT---T-----------ATC-------------------AATTAA---A-ACGAA----------CTACGTGTG----ATATTGATTTATT--CAG-------TTGATT----TATTTATT-----------------------------------CTTA-TTTATTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droEle1 scf7180000491193:1011163-1011570 + CATCATTATCAACCGCCCGAACACGCCCAAGACGCTGCTGGAGAATACAGGTAAGA--------------------------------CGTTT-GGG---CTGATTGAAGCCTATCG----------AA------------TATC---ACGG-----------A---------CTGTCTAAGA--------------------------------------------------------------------------------------------------------------------------------------TATAT--ATTTTATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACAAAAT---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-T--AGAT------AGCC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCGATTCGAGTGTA--GC---A-----------ATC-------------------AATCAA---A-GCGTA----------CTACGTGTA----ATATTGATTTATT--CAG-------TTAATT----TATTTATT-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droRho1 scf7180000780231:90696-91118 - CATTATTATCAATCGTCCGAACACGCCCAAGACGTTGTTGGAGAATACAGGTAGGT--------------------------------CGTTT-GTG---CTGATCAATGTCTTTCG----------AA------------TATC---CCGG-----------A---------CTTTTTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------A----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGAGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACAAAAC---GAAATCAAACCTCACTCCCAT----------ACAACA---TACATA----------------------------------GA-TAT--TT------AGCC-GAGAATCGC---TATTGATAT-----------------------------------------------------------------------------TCGATCCAAGTGTA--GC---A-----------ATC-------------------AATCAA---A-GCGTA----------CAACGTGTG----ATATTGATTTATT--CAG-------TTAATT----TGTTTATT-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droBia1 scf7180000302193:3731536-3731963 + TATCATTATCAACCGCCCGAACACGCCCAAGACTCTGCTGGAGAATACAGGTGAGC--------------------------------CGTTT-GGG---CTGACCCAAGTCTTTCG----------AG------------TTTCTGTCTAC-----------G---------CTGTCTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGTGCGTATGTG-GA-------TGTCTGGAACCTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCACG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---G-----------ATC-------------------AATCAA---A-GCAAA----------CTACGTGTG----GTATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droTak1 scf7180000415809:103312-103753 + TATCATCATCAACCGCCCGAATACGCCCAAGACTCTGCTGGAGAATACAGGTAACA-G----------------------------ATC-----------------CA----------------TTTA--CCAGTAAAAAATTTATGTTTAA-----------G---------CTGTCTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATACAT---ATATG--------------------------------------------------------------------------------------------------------------------------------------------AT--------------------TCCGAACTCTGAATGTATGTGCGTATGTG-GA-------TGTCTGGAATTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCACGA-G---------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATTG-------------T-------------------GA-TATAGAT------AGAC-GCGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATTAA---A-GCCAA----------CTACGTGTG----ATATTGATTTATT--CAATT--CATTTGATT----TATTTCTA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droEug1 scf7180000408993:1646-1850 + TATATGTATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGT-----------ATATATGTATATATGT-------------------------------------------ATA--------------T---------------------------------A----TGTATATAT-------G--------------TA------TATATG--T-------------------------------------------------------------------ATATATGTATATATGTATATATGTATATATGTATACTATGTATATATGTATATATGTATATATGTATA---TATGTATATATGTATATATG--------------------------------T----------AT----------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATATAT-----G-------T--ATA----TATGTAT----------------------------------------------------------------------------------------ATATGTATAT-ATGTATATATGTATATA
dm3 chr3L:6189762-6190186 + CATCATTATCAACCGCCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GAG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCCGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-CAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAATTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droSim2 3l:6100323-6100747 + dsi_20572 CATCATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------CGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTTTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAATTGAAGTGGCTCCT
droSec2 scaffold_2:6166082-6166506 + CATCATTATCAACCGTCCGAACACGCCCAAGACACTGTTGGAGAACACAGGTAATT--------------------------------CTTTT-GGG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTATA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTTTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droYak3 3L:6778811-6779235 + CATCATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATTTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTATGAATTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAGTTTGTTTCTCTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAA-----------------------------------------------------------------------------TCAATTCGAGTTAA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT
droEre2 scaffold_4784:8886511-8886941 + CATTATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATCTTTTG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTCTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGATAGATATAGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGTTATTATTAATCGGCCAAATACACCAAAGACGCTGCTTGAGAATACAGGTGAGT--------------------------------G---------------------------------------------------------------------------------------------------TGC-----------CTAC-------------------------------------------ATATACATATATATAT-----------------------------------------------A----TTTATATAT-------GAATATTTAAATGTGTGAGTGTGTGAATGTAAGCCCATTTATTTATTATAATTGTCATAGAAATTAACTTAAATTATATATATATATAATGATAATGATATGTGTGTGC----------------------------------------------------------------GTGCGTGTGTGTGTGTGCG-AA-------TGTCTGTA--------------T-------TAT-TACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTAAATTATT--CAG-------TTGATT----TATTTATATATTTAAACAAAAACCAAAAAAAAAAGAAAATTCATTTT-TTTCTATTGTTTATTTTTTTTATAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCGGTCGTCTAGGTTATGTGT....................2611.00100100
.................CAAATACACCAAAGACGCTGCTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATAACAATCGGTCGTCTA..............................2211.00100001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAATCGGTCGTCTAGGT...........................2111.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGC----------------------------------------------------------------GTGCGTGTGTGTGTGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25190.05100001
droVir3
CATTATCATCAATCGCCCGAATACGCCCAAAACGCTGCTGGAGAATACAGGTGAGTAGAGGCAATAAGGTGTGTGTGCTATGTGCATTCGTTA---------------------------------------------------T---AAAA-----------G---------CTGTATGC-AATGTATATGCGAAATATTT--------------------------------------------------------------------------------------------------------------A----TAT-------------G------------TTTG------TGTGCG--T-------------------------------------------------------------------ATGTGTGTACGTA------------------------------------------------------------CGTTTGTACATATGTATGTGCGC-------TATCTAAACATTTATTTCTGGTATCATTTAA-------CGTTGCATGTGACTCATTGTCGCCAATTGCAACAACAATAACAATAA---TAAACAAAACAT------------------------A---TGAACAT-------------CACAC----ACCATCATTGT------GTAT------TGTA-A----------------GTTC----TTGTGAATGTT-CA-ACTTTTCGTTGTGTG--TAATTAATTGAA--------A-ACG----------AATCGA----T-----------GC---AATAGAAAAACACACTAAAAACCAAGCAAATACCAAATACAAAT-CCATA----AA----ATAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................GTGAGTAGAGGCAATAAGGTGTGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.002000000000000000000000000000000010000010000000000000000000000000
....ATCATCAATCGCCCGAAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCGGTCGTCTAGGT...........................1911.001000000000000000000000000000001000000000000000000000000000000000
..............................AACGCTGCTGGAGAATACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-------CGTTGCATGTGACTCATTGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCGGTCGTCTAGGTTATGTGTGCC.................2811.001100000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTAGGTTATGTGTGCCCAGT.............2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTTATGTGTGCCCAGTTGAA.........2411.001001000000000000000000000000000000000000000000000000000000000000
...............CCCGAATACGCCCAAAACGCTGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATCGGTCGTCTAGGTTATG.......................2411.001000000000000000000000000000000100000000000000000000000000000000
.......ATCAATCGCCCGAATACGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
..............................AACGCTGCTGGAGAATACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCGC-------TATCTAAACATTTATTTCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000010000000000000000000000000000000
........................................................................GTGTGCTATGTGCATTCGTTA---------------------------------------------------T---AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000010000000000000000000000000000000
....ATCATCAATCGCCCGAATACGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATGTGACTCATTGTCGCCAATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000010000000000000000000000000000000000000000
.................CGAATACGCCCAAAACGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGTT-CA-ACTTTTCGTTGTGTG--TC...................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000001000
.............................................................................................................................................................................................................................................................................................................................TAT-------------G------------TTTG------TGTGCG--T-------------------------------------------------------------------ATGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000010000000000000000000000000000000000000000000000000000000000
droMoj3
CGTCATCATCAATCGCCCGAATACGCCCAAAACGCTGCTGGAGAATACAGGTGAGT--------------------------------G--------------------------------------AA------------TGTT---CAGA-----------A-------------------------ATGCATTCTGT--------------------GAATGATATGTTTATACATATATACACATACAAAT-CATATGTGTATATATATATGCATATACATCAGCAGTATGCAAATAATTGTAT----G----TATATGTAT-------G--------------------------------------------------------------------------------------------------------------------------------------------TG---------------------------TCTGAACATAAGTATGTGTG----C-------TGACTGAACATTTGTTTCTGATATCATTTAC-------CGTTGCATGTGACGCATTGTCGTC---------AGCTGCAAAAATCCAGGAAAATAGAAA-TCATAATAATAACAATATGAAAAACA---TGCATAA-------------CACAT----ACT-TCATT--------GTAT------TGTC-G----------------ATTTGTCAATGTGAATGTTTCAAACTTATTGCTGTATG--TAATTAATTGAA--------GCGCGTCTCG-----AATCAATCAATTAAGAACATGCGC---A-----------A--------------------------------TCAAA----CA----ATAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTAGGTTATGTGTGCC.................1911.001100000
....ATCATCAATCGCCCGAATACGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
CATCATCATCAATCGCCCGAATACGCCTAAGACTCTGCTGGAGAATACAGGTGCGTACA-----------------------------CAT-T-AAT---ATAATCGG-ATG-----CTAAGCA---AA------------TTAC---ATAA-----------A---------CTGTATGC-AATGTATATGCAGATATTCTATATATATATAGTTTTATGTATG---TGTTTATGTATATATATATATATATATATATATATAT-----------------------------------------------A----TATATATAT-------GTATATATATATGTGTGTGTTTGTGTCTGT-----------------------------------------------------------------------------A---------------------------CATATATT--------------------TATGTACA--CAATGTATGTGCGCAAGCT-ATTTACGACAGTCTAAACATTTGCTTCTGGTTTCATTTAA-------TGATGCATGTGACGCATTGTCGCCAATTGCAACAAAA-------ACC---------AAAA-TAATAATAACAACAACAACAAAAGCATATTGCATAAATACTAATATATACACATATATAC--TAATT--------ATAT------TGTC-A----------------ATAT----TGATGTATGTT-CAAATTTATTGTTGTATATGCCATTAATCGATTGAATAGAAAACGTTTCAATCAAAATCAATCAATTCGAAACAA--AC---A-----------AACCAA----------------AACCAA---A-CCAAA----CA----ACAAATGTA----ATA-TAATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------------TTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTCGTCTAGGTTATGTGTGCC.................2311.00101
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGTGTGCCCAGTTGAAGTGGCT...2711.00110
dp5
CGTTATAATCAATCGCCCGAATACGCCCAAGACACTGCTGGAGAACACAGGTGAGT--------------------------------GGTTC-GAG---GAGGCTC-------------GTCATTGATTTCA-------------------AAAGAGAAGCTG---------CTGTTTAAATATATATATATG-----------TGTATATATATGC---------------------------------------------------------TCATATA--------------------------TGTG-TGTA---------TG----------------------------TATATG--A-------------------------------------------------------------------ACACATGTATATGTGTATCAATG-ATATTTATTTAACATATATC---------------------------TCTGTATGTATGTGTGTATGTG-GAA------TATTTGAACATTTGTTTCTGTCTTATTTTCTGT-CTCAAAACGAACA------------------------ATCAA-AACGAACC---GAAATCCATTCACATACCCGT----------ACCACA---TGCATA----------------------------------GA-TATAGAT------ATTCTAAGAAATACGATAATTTATATA----------------------------------------------------------------------------TCAATTTGAGTGTG--T--ACT-----------ATC-------------------AATCGA---A-TCGAATCTA-AATATCTGT----GTTAATTATTGATTTATTTCTAGTTAATATATGATTTTCTGATTTCCA-----------------------------------CTTT-TGTTTTCTGTTCA------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCGGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................ACACTGCTGGAGAACACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................GACACTGCTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATAACAATCGGTCGTC................................2011.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTATGTGTGCCCGGTT............1811.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTATGTATGTGTGTATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000001000
......................................................................................................................................................................................TATATATATATG-----------TGTATATAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGTATGTGTGTATGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19160.0610100000000
......................................................................................................................................................................................TATATATATATG-----------TGTATATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20180.0610100000000
droPer2
CGTTATAATCAATCGCCCGAATACGCCCAAGACACTGCTGGAGAACACAGGTGAGT--------------------------------GGTTC-GAG---GAGGCTC-------------GTCATTGATTTCA-------------------AAAGAGAAGCTG---------CTGTTTAAATATATATATATG-----------TGTATATATATGC---------------------------------------------------------TCATATA--------------------------TGTA-TGTA---------TG----------------------------TATATG--A-------------------------------------------------------------------ACACATGTATATGTGTATCAATG-ATATTTATTTAACATATATC---------------------------TCTGTATGTATGTGTGTATGTG-GAA------TATTTGAACATTTGTTTCTGTCTTATTTTCTGT-CTCAAAACGAACA------------------------ATCAA-AACGAACC---GAAATCCATTCACATACCCGT----------ACCACA---TGCATA----------------------------------GA-TATAGAT------ATTCTAAGAAATACGATAATTTATATA----------------------------------------------------------------------------TCAATTTGAGTGTG--T--ACT-----------ATC-------------------AATCGA---A-TCGAATCTA-AATATCTGT----GTTAATTATTGATTTATTTCTAGTTAATATATGATTTTCTGATTTCCA-----------------------------------CTTT-TGTTTTCTGTTCA------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCGGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGTCGTCTAGGTTATGTGT....................2311.001001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-TGTTTTCTGTTCA------TTTTAG..................................................2111.001010000
droAna3
CATCATTATCAACCGCCCCAACACGCCCAAGACTCTGCTGGAGAACACAGGTGAGT--------------------------------TGGTC-GAG---CTTATC--------------------------------------------GA-----------A---------CTAT--------ATAT--AAGTTATATGT----CTATATATAT----------------------------------------------TA-------------------------------------------------CGTA---------CCTATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGCGTGTATGTG-GA-------GCTCTGAACATTTGTTTCCGTTTTAGTTTATGT-TACTTGTTGCATGGAA---------------------GGCAGCAACGAAAC---AAAATCGAACTTCATTCCCAT----------ACAACA---TGCATAG-------------CATA----------------GAATTTAGAT------TACT-GAGAATCGA---A----------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAATGTG----CTATTGATTTATT--CAG-------TTGATT----TATTTCTA-----------------------------------CTTA-TTTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................CGCCCAAGACTCTGCTGGAGAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
..............................................ACAGGTGAGT--------------------------------TGGTC-GAG---CTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............CGCCCCAACACGCCCAAGACTCTGCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
..............GCCCCAACACGCCCAAGACTCTGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
CGTCATAATCAACCGCCCCAATACGCCCAAGACTCTGCTGGAGAACACAGGTGAGT--------------------------------TGTTG-CAG---CCGAT------TTTTCG----------GC------------T-CG---CCGA-----------GCTATACGGGCTGT--------------ACGTTGTATGT----CT--------------------------------------------------------------------------------------------------------A----TATAC----CCAATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGCGTGTATGTG-GA-------GCTCTGAACATTTGTTTCTGTTTTAGTTTGTGT-TACTTGTTGCATGGTA---------------------AGCAGCAACGAAAC---CAAATCGAAC-TCATTCCCAT----------ACAACA---TGCATT----------------------------------GAATTTGGAT------TACC-GATAATCGC---CATTGACAT-----------------------------------------------------------------------------T-AATCGGAGTTTA--GCAACG-----------ATC-------------------AGTCAA---A-GCGAT---A-T----ATATATGTG----GTATTGATTTATT--CAG-------TTGATT----TATTTCTT-----------------------------------CTTA-TTTTTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droKik1
TGTCATCATCAATAAACCCAACACGCCAAAGACACTGCTGGAGAATACAGGTAAGG------------------------------ATCGTTTTG-GCGGCTGATAGAT--------------------CTCA------------------------------A---------CTCT--------ATATCT-----------TTAC-------------------------------------------ATGTATATATATATAT-----------------------------------------------C----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCAGTATGTATGTGTGTATGTG-GA-------TCTCTGGACATTTGTTTCTGTTTTAGTTTGTGTTTACCTGTTGCATGAAG---------------------AGCAGCAACGAAAC---AAAATCGAACCTCATTCCCAT----------ACAACA---TACATA----------------------------------GAATTTA------------T-GAGA--------------------------------------------------------------------------------------------------------------------------------------------------------GAA---AGGGGTAC---CT----ATAAGTGTG----ATATTGATTTATT--CAG-------TTGATT----TATTTCTCT----------------------------------CTTACTTTTTTCTGTTTC----TTTTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droFic1
CATTATCATCAACCGGCCGAACACTCCCAAGACTCTGCTGGAGAATACAGGTGAGC--------------------------------CGTTT-GGG---CTGATCCG-GTTAATCG----------AA------------TTGC----CGG-----------G---------ATGCCTCAAAACTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATCT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATGA-G---------------------AGCAGCAACGAAAC---GAAATCGAACATCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-T--AGAC------AGTT-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCAAGTGTA--GT---T-----------ATC-------------------AATTAA---A-ACGAA----------CTACGTGTG----ATATTGATTTATT--CAG-------TTGATT----TATTTATT-----------------------------------CTTA-TTTATTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droEle1
CATCATTATCAACCGCCCGAACACGCCCAAGACGCTGCTGGAGAATACAGGTAAGA--------------------------------CGTTT-GGG---CTGATTGAAGCCTATCG----------AA------------TATC---ACGG-----------A---------CTGTCTAAGA--------------------------------------------------------------------------------------------------------------------------------------TATAT--ATTTTATATG--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACAAAAT---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-T--AGAT------AGCC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCGATTCGAGTGTA--GC---A-----------ATC-------------------AATCAA---A-GCGTA----------CTACGTGTA----ATATTGATTTATT--CAG-------TTAATT----TATTTATT-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droRho1
CATTATTATCAATCGTCCGAACACGCCCAAGACGTTGTTGGAGAATACAGGTAGGT--------------------------------CGTTT-GTG---CTGATCAATGTCTTTCG----------AA------------TATC---CCGG-----------A---------CTTTTTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------A----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGAATGTATGAGTGTATGTG-GA-------TCTCTGGAACTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACAAAAC---GAAATCAAACCTCACTCCCAT----------ACAACA---TACATA----------------------------------GA-TAT--TT------AGCC-GAGAATCGC---TATTGATAT-----------------------------------------------------------------------------TCGATCCAAGTGTA--GC---A-----------ATC-------------------AATCAA---A-GCGTA----------CAACGTGTG----ATATTGATTTATT--CAG-------TTAATT----TGTTTATT-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droBia1
TATCATTATCAACCGCCCGAACACGCCCAAGACTCTGCTGGAGAATACAGGTGAGC--------------------------------CGTTT-GGG---CTGACCCAAGTCTTTCG----------AG------------TTTCTGTCTAC-----------G---------CTGTCTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------G--------------------------------------------------------------------------------------------------------------------------------------------AT---------------------------TCTGTATGTATGTGCGTATGTG-GA-------TGTCTGGAACCTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCACG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---G-----------ATC-------------------AATCAA---A-GCAAA----------CTACGTGTG----GTATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droTak1
TATCATCATCAACCGCCCGAATACGCCCAAGACTCTGCTGGAGAATACAGGTAACA-G----------------------------ATC-----------------CA----------------TTTA--CCAGTAAAAAATTTATGTTTAA-----------G---------CTGTCTAAGAATTTATATGCGATTTGTTT--------------------------------------------------------------------------------------------------------------G----TATATACAT---ATATG--------------------------------------------------------------------------------------------------------------------------------------------AT--------------------TCCGAACTCTGAATGTATGTGCGTATGTG-GA-------TGTCTGGAATTTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCACGA-G---------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATTG-------------T-------------------GA-TATAGAT------AGAC-GCGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATTAA---A-GCCAA----------CTACGTGTG----ATATTGATTTATT--CAATT--CATTTGATT----TATTTCTA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotal
No Reads
droEug1
TATATGTATATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTATATATGT-----------ATATATGTATATATGT-------------------------------------------ATA--------------T---------------------------------A----TGTATATAT-------G--------------TA------TATATG--T-------------------------------------------------------------------ATATATGTATATATGTATATATGTATATATGTATACTATGTATATATGTATATATGTATATATGTATA---TATGTATATATGTATATATG--------------------------------T----------AT----------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGTATATAT-----G-------T--ATA----TATGTAT----------------------------------------------------------------------------------------ATATGTATAT-ATGTATATATGTATATASizeHit CountTotal NormTotal
No Reads
dm3
CATCATTATCAACCGCCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GAG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCCGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-CAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAATTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.............................AGACACTGCTGGAGAACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
CATCATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------CGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTTTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAATTGAAGTGGCTCCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAATAACAATCGGTCGTCA...............................2212.00200000000000002000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATCGGTCGTCTAGGTTATGTG.....................2611.00100000000001000000
.......ATCAACCGTCCGAACACGCCCAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..............GTCCGAACACGCCCAAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.........................CCCAAGACACTGCTGGAGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAATAACAATCGGTCGTCT...............................2111.00100000000000001000
.................................ACTGCTGGAGAACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000010000000000
...............................ACACTGCTGGAGAACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
........TCAACCGTCCGAACACGCCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAATCGGTCGTCTAGGT...........................2111.00101000000000000000
.............................AGACACTGCTGGAGAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------C..........................................................................................................................................................................2111.00100001000000000000
..............................GACACTGCTGGAGAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG-------TTGATT----TATTTA.....................................................................................................................1550.20100000001000000000
................................................................................................G---CTGATAGAAATCTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1550.20100000000001000000
................................................................................................G---CTGATAGAAATCTTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16110.09100000000001000000
droSec2
CATCATTATCAACCGTCCGAACACGCCCAAGACACTGTTGGAGAACACAGGTAATT--------------------------------CTTTT-GGG---CTGATAGAAATCTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTGTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTATA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTTTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................GACACTGTTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030201
.............................AGACACTGTTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0021100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGGTCGTCTAGGTTATGTGTGCCC................2711.0010010
..................GAACACGCCCAAGACACTGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTAGGTTATGTGTGCCC................1911.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACGAAAC---GAAATCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
droYak3
CATCATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATTTTTCG----------AA------------TTTC---CCGA-----------G---------CTATCTATGAATTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAGTTTGTTTCTCTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGAT------AGAC-GAGAATCGC---AATTGATAA-----------------------------------------------------------------------------TCAATTCGAGTTAA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATA----------------------------------GA-TATAGAT------AGAC-GAGAAT........................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..............................GACACTGCTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................CAAGACACTGCTGGAGAACACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGTTATGTGTGCCCAGTTGAAG........2511.00101000000000
.................................................................................................................................................................................CTATGAATTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
droEre2
CATTATTATCAACCGTCCGAACACGCCCAAGACACTGCTGGAGAACACAGGTAATT--------------------------------CGTTT-GGG---CTGATAGAAATCTTTTG----------AA------------TTTC---CCGA-----------G---------CTATCTAAGAACTTATATGCGATCTGTTT--------------------------------------------------------------------------------------------------------------G----TATATATAT-------T--------------------------------------------------------------------------------------------------------------------------------------------AC---------------------------TCTGAATGTATGCGTGTATGTG-GA-------TGTCTGGAAATTTGTTTCTCTTTTAATTTGTGT-TACTTGTTGCATG------------------------AGCAGCAACGAAAC---GAAATCGAACCTCATTCCCAT----------ACAACA---TGCATA----------------------------------GA-TATAGATAGATATAGAC-GAGAATCGC---AATTGATAT-----------------------------------------------------------------------------TCAATTCGAGTTTA--GC---A-----------ATC-------------------AATCGC---A-GCGAA----------CTACGTATG----ATATTGATTTATT--CAG-------TTGATT----TATTTATA-----------------------------------CTTA-TTTCTTCTGTTC-------TTTTAGCAATAACAATCGGTCGTCTAGGTTATGTGTGCCCAGTTGAAGTGGCTCCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................GACACTGCTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTAGGTTATGTGTGCCC................2011.0011000000
.............................................................................................................ATCTTTTG----------AA------------TTTC---CCGA-----------G---------CTAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...............................ACACTGCTGGAGAACACAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........CAACCGTCCGAACACGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............................AGACACTGCTGGAGAACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTAGGTTATGTGTGCCCA...............2111.0010000010

Generated: 05/17/2015 at 11:27 PM