dwi_504

exon [dwil_GLEANR_17352:1]; CDS [Dwil\GK17017-cds]; exon [dwil_GLEANR_17352:2]; CDS [Dwil\GK17017-cds]; intron [Dwil\GK17017-in]

##################################################---------------------------------------------------################################################## CTCCATCTCAGATAATGGCACAATGCCCTGCTAATGACAACGTCGAACAGGTGAGTCGGTGTCCACAAGGTAGGTATGCGAAACTTGTCTTTTATTCGCAGATTGGACAAAACGATCTTGCTTCAGCGGATCCTGTTCCCTTGGTGGATGC ************************************************........(((.....(((((((((.......))))))))).....)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V117 male body	M020 head
..................................TGACAACGTCGAACAGGTGAGTCGG............................................................................................	25	0	4	22.25	89	62	21	6	0
..................................TGACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	27	0	4	18.75	75	45	13	16	1
.............................................AACAGGTGAGTCGGTGTCCACAAGG.................................................................................	25	0	4	13.25	53	44	9	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	28	0	4	11.75	47	44	1	2	0
..................................TGACAACGTCGAACAGGTGAGTCGGT...........................................................................................	26	0	4	10.25	41	30	8	2	1
..........................................TCGAACAGGTGAGTCGGTGTCCACA....................................................................................	25	0	4	7.50	30	29	1	0	0
............................................GAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	26	0	4	5.25	21	19	1	1	0
...........................................CGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	27	0	4	5.00	20	19	1	0	0
.....................................CAACGTCGAACAGGTGAGTCGGTG..........................................................................................	24	0	4	4.75	19	12	5	2	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	25	0	4	4.25	17	12	4	1	0
..........................................TCGAACAGGTGAGTCGGTGTCCAC.....................................................................................	24	0	4	3.75	15	13	2	0	0
..................................TGACAACGTCGAACAGGTGAGTCG.............................................................................................	24	0	4	3.25	13	9	4	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAG..................................................................................	27	0	4	3.00	12	11	0	1	0
...................................GACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	26	0	4	2.75	11	8	3	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	25	0	4	2.75	11	6	4	1	0
...................................GACAACGTCGAACAGGTGAGTCGG............................................................................................	24	0	4	2.00	8	8	0	0	0
......................................................................................................................TGCTTCAGCGGATCCTGTTCCCTTGG.......	26	0	1	2.00	2	2	0	0	0
.............................................................TCCACAAGGTAGGTATGCGAAACTTG................................................................	26	0	1	2.00	2	2	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCACAAG..................................................................................	26	0	4	1.75	7	5	2	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	27	0	4	1.75	7	4	2	1	0
...........................................CGAACAGGTGAGTCGGTGTCCACA....................................................................................	24	0	4	1.75	7	4	2	1	0
.............................................................TCCACAAGGTAGGTATGCGAAACTT.................................................................	25	0	3	1.67	5	4	1	0	0
...........................................................TGTCCACAAGGTAGGTATGCGAAACT..................................................................	26	0	3	1.67	5	2	2	1	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAA...................................................................................	26	0	4	1.50	6	4	2	0	0
................................................................................................................................GATCCTGTTCCCTTGGTGGATGC	23	0	3	1.33	4	4	0	0	0
...................................GACAACGTCGAACAGGTGAGTCGGT...........................................................................................	25	0	4	1.25	5	5	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGT...........................................................................................	23	0	4	1.25	5	2	1	0	2
.................................................GGTGAGTCGGTGTCCACAAGGTAGGT............................................................................	26	0	4	1.25	5	5	0	0	0
................................................AGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	26	0	4	1.25	5	4	1	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCA......................................................................................	23	0	4	1.25	5	2	3	0	0
..........................................................................................................................TCAGCGGATCCTGTTCCCTTGGTGGATA.	28	1	1	1.00	1	1	0	0	0
...............................TAATGACAACGTCGAACAGGTGAGT...............................................................................................	25	0	1	1.00	1	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTAT..........................................................................	26	0	4	1.00	4	3	1	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTGT.........................................................................................	28	0	4	1.00	4	0	0	4	0
...........................................................TGTCCACAAGGTAGGTATGCGAAACTT.................................................................	27	0	3	1.00	3	2	1	0	0
.....................................CAACGTCGAACAGGTGAGTCGG............................................................................................	22	0	4	1.00	4	2	2	0	0
.........................................................................................................................TTCAGCGGATCCTGTTCCCTTGGTGGA...	27	0	1	1.00	1	1	0	0	0
........................................CGTCGAACAGGTGAGTCGGTGTCCA......................................................................................	25	0	4	0.75	3	2	1	0	0
....................................ACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	25	0	4	0.75	3	1	2	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGT............................................................................	24	0	4	0.75	3	3	0	0	0
..................................TGACAACGTCGAACAGGTGAGTC..............................................................................................	23	0	4	0.75	3	2	1	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGG.................................................................................	24	0	4	0.75	3	3	0	0	0
..........................................TCGAACAGGTGAGTCGGTGTCC.......................................................................................	22	0	4	0.75	3	1	2	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	26	0	4	0.75	3	2	1	0	0
.............................................AACAGGTGAGTCGGTGTCCACAAGGT................................................................................	26	0	4	0.75	3	1	2	0	0
.......................................................TCGGTGTCCACAAGGTAGGTATGCG.......................................................................	25	0	3	0.67	2	0	2	0	0
........................................................CGGTGTCCACAAGGTAGGTATGCGAAA....................................................................	27	0	3	0.67	2	1	0	1	0
..CCATCTCAGATAATGGCACAATGCCC...........................................................................................................................	26	0	2	0.50	1	1	0	0	0
.....................................CAACGTCGAACAGGTGAGT...............................................................................................	19	0	4	0.50	2	1	0	1	0
.......TCAGATAATGGCACAATGCCCTGC........................................................................................................................	24	0	2	0.50	1	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGG.................................................................................	19	0	4	0.50	2	1	1	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	26	0	4	0.50	2	1	1	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTATG.........................................................................	27	0	4	0.50	2	1	1	0	0
................................................AGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	25	0	4	0.50	2	1	1	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGG.................................................................................	23	0	4	0.50	2	2	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCAC.....................................................................................	23	0	4	0.50	2	2	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	25	0	4	0.50	2	2	0	0	0
.....................................CAACGTCGAACAGGTGATTCGGTG..........................................................................................	24	1	4	0.50	2	0	2	0	0
................................................................................................................................GATCCTGTTCCCTTGGTGGATT.	22	1	3	0.33	1	1	0	0	0
...........................................................TGTCCACAAGGTAGGTATGCGAAAC...................................................................	25	0	3	0.33	1	0	1	0	0
........................................................CGGTGTCCACAAGGTAGGTATGCGA......................................................................	25	0	3	0.33	1	1	0	0	0
.............................................................TCCACAAGGTAGGTATGCGAAACT..................................................................	24	0	3	0.33	1	1	0	0	0
......................................................GTCGGTGTCCACAAGGTAGGTATGCGA......................................................................	27	0	3	0.33	1	1	0	0	0
........CAGATAATGGGACAATGCCCTGC........................................................................................................................	23	1	3	0.33	1	1	0	0	0
..............................................................CCACAAGGTAGGTATGCGAAACTT.................................................................	24	0	3	0.33	1	1	0	0	0
.....................................................TTTCGGTGTCCACAAGGTAGGTATGCGA......................................................................	28	2	3	0.33	1	1	0	0	0
............................................................GTCCACAAGGTAGGTATGCGAAACTT.................................................................	26	0	3	0.33	1	1	0	0	0
............................................................GTCCACAAGGTAGGTATGCGAAACT..................................................................	25	0	3	0.33	1	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAG..............................................................................	24	0	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGTGAG................................................................................................	21	0	4	0.25	1	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCG.............................................................................................	21	0	4	0.25	1	0	1	0	0
....................................................GAGTCGGTGTCCACAAGGTAGGTA...........................................................................	24	0	4	0.25	1	1	0	0	0
............................................GAACAGGTGAGTCGGTGTCCACAAGGT................................................................................	27	0	4	0.25	1	1	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCA......................................................................................	22	0	4	0.25	1	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGTGTT........................................................................................	26	1	4	0.25	1	1	0	0	0
......................................AACGTCGAACAGGTGAGTCGGTG..........................................................................................	23	0	4	0.25	1	1	0	0	0
.....................................CAACGTCGAACAGGAGAGTCGGT...........................................................................................	23	1	4	0.25	1	0	1	0	0
..........................................TCGAACAGGTGAGTCGATGTCCACA....................................................................................	25	1	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGTGA.................................................................................................	20	0	4	0.25	1	0	1	0	0
.........................................GTCGAACAGGTGAGTCGG............................................................................................	18	0	4	0.25	1	1	0	0	0
..........................................TCGAACAGGTGAGTCGGT...........................................................................................	18	0	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTT..........................................................................................	27	1	4	0.25	1	0	1	0	0
..................................TGACAACTTCGAACAGGTGAGTCGGTG..........................................................................................	27	1	4	0.25	1	1	0	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAT...................................................................................	26	1	4	0.25	1	0	0	1	0
..................................TGACAACGTCGAACAGGTGAGTCGGTA..........................................................................................	27	1	4	0.25	1	1	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGT................................................................................	24	0	4	0.25	1	1	0	0	0
...........................................CGAACAGGTGAGTCGGTG..........................................................................................	18	0	4	0.25	1	1	0	0	0
.............................................AGCAGGTGAGTCGGTGTCCACAAGG.................................................................................	25	1	4	0.25	1	0	1	0	0
.......................................................TCGGTGTCCACAAGGTAGGTATGC........................................................................	24	0	4	0.25	1	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTTC..........................................................................	28	2	4	0.25	1	1	0	0	0
.........................................GTCGAACAGGTGAGTCGGTGTC........................................................................................	22	0	4	0.25	1	0	1	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGC...........................................................................................	26	1	4	0.25	1	0	0	0	1
..................................TGACAACGTCGAACAGGTGAGTCGGTGG.........................................................................................	28	1	4	0.25	1	0	0	1	0
...................................GACAAAGTCGAACAGGTGAGTCGGTC..........................................................................................	26	2	4	0.25	1	0	1	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTTT.........................................................................................	28	1	4	0.25	1	0	0	1	0
..........................................TCGAACAGGTGAGTCGGTGTCCACTGA..................................................................................	27	3	4	0.25	1	0	0	1	0
.................................CTGACAACGTCGAACAGGTGAGTCG.............................................................................................	25	1	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGCTGAGTCGG............................................................................................	25	1	4	0.25	1	1	0	0	0
.................................ATGACAACGTCGAACAGGTGAGT...............................................................................................	23	0	4	0.25	1	1	0	0	0
........................................................CGGTGTCCACAAGGTAGGTA...........................................................................	20	0	4	0.25	1	1	0	0	0
.............................................AACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	27	0	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGTGAGTCAG............................................................................................	25	1	4	0.25	1	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTT...........................................................................	27	1	4	0.25	1	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTATT.........................................................................	27	1	4	0.25	1	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGTGT.........................................................................................	25	0	4	0.25	1	1	0	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	27	0	4	0.25	1	1	0	0	0
..................................................GTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	26	0	4	0.25	1	1	0	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGA................................................................................	25	1	4	0.25	1	1	0	0	0
.................................GTGACAACGTCAAACAGGTGAGTCGGT...........................................................................................	27	2	4	0.25	1	1	0	0	0
.................................ATGACAACGTCGAACAGGTGAGTCG.............................................................................................	25	0	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGT...................................................................................................	18	0	4	0.25	1	0	1	0	0
................................................AGGTGAGTCGGTGTCCACAAGGTATAGA...........................................................................	28	3	4	0.25	1	0	0	1	0
........................................CGTCGAACAGGTGAGTCGGTGTCCAC.....................................................................................	26	0	4	0.25	1	0	1	0	0
..................................TGACAACGTCGAACAGGTG..................................................................................................	19	0	4	0.25	1	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTTT..........................................................................	28	1	4	0.25	1	1	0	0	0
....................................................GAGTCGGTGTCCACAAGGTAGGTATT.........................................................................	26	1	4	0.25	1	1	0	0	0
...................................................TGAGTCCGTGTCCACAAGGTAGGT............................................................................	24	1	4	0.25	1	0	1	0	0
.............................................AACAGGTGAGTAGGTGTCCACAAGG.................................................................................	25	1	4	0.25	1	1	0	0	0
............................................GAACAGGTGAGTCGGTGTCCAC.....................................................................................	22	0	4	0.25	1	1	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCACAATA.................................................................................	27	2	4	0.25	1	1	0	0	0
....................................ACAACGTCGAACAGGTGAGTCGGT...........................................................................................	24	0	4	0.25	1	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGC............................................................................	24	1	4	0.25	1	1	0	0	0
........................................CGTCGAACAGGTGAGTCGGTGTCCAGAA...................................................................................	28	1	4	0.25	1	1	0	0	0
....................................................GAGTCGGTGTCCACAAGGTAGTTA...........................................................................	24	1	4	0.25	1	1	0	0	0
...................................GACAACGTCGAACAGGTGAGT...............................................................................................	21	0	4	0.25	1	1	0	0	0
....................................................GAGTCGGTGTCCACAAGGTAGGTATC.........................................................................	26	1	4	0.25	1	0	1	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTAA.........................................................................................	28	2	4	0.25	1	1	0	0	0
....................................ACAACGTCGAACAGGTGAGTCG.............................................................................................	22	0	4	0.25	1	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGG.................................................................................	21	0	4	0.25	1	1	0	0	0
..................................TGACAACGTCGAACAGGTGGGTCGGT...........................................................................................	26	1	4	0.25	1	1	0	0	0
......................................................GTCGGTGTCCACAAGGTAGGTATG.........................................................................	24	0	4	0.25	1	1	0	0	0
..........................................TCGAACAGGTGAGTCGGTG..........................................................................................	19	0	4	0.25	1	1	0	0	0
..................................................GTGAGTCGGTGTCCACAAGGTAGG.............................................................................	24	0	4	0.25	1	1	0	0	0
...........................................CGAACAGGTGAGTCGGTGTACACAAGG.................................................................................	27	1	4	0.25	1	0	1	0	0
.............................................AACAGGTGAGTCGGTGTCCACA....................................................................................	22	0	4	0.25	1	0	1	0	0
......................................AACGTCGAACAGGTGAGTCGGTGTCCA......................................................................................	27	0	4	0.25	1	1	0	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAT..................................................................................	27	1	4	0.25	1	1	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	27	0	4	0.25	1	1	0	0	0
........................................CGTCGAACAGGTGAGTCGGTG..........................................................................................	21	0	4	0.25	1	1	0	0	0
.............................................AACAGGTGAGTCGGCGTCCACAAGG.................................................................................	25	1	4	0.25	1	0	1	0	0
...........................................CTAACAGGTGAGTCGGTGTCCACAA...................................................................................	25	1	4	0.25	1	1	0	0	0

##################################################---------------------------------------------------##################################################
CTCCATCTCAGATAATGGCACAATGCCCTGCTAATGACAACGTCGAACAGGTGAGTCGGTGTCCACAAGGTAGGTATGCGAAACTTGTCTTTTATTCGCAGATTGGACAAAACGATCTTGCTTCAGCGGATCCTGTTCCCTTGGTGGATGC
**************************************************........(((.....(((((((((.......))))))))).....)))..**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

V117
male body

M020
head

..................................TGACAACGTCGAACAGGTGAGTCGG............................................................................................

22.25

..................................TGACAACGTCGAACAGGTGAGTCGGTG..........................................................................................

18.75

.............................................AACAGGTGAGTCGGTGTCCACAAGG.................................................................................

13.25

..........................................TCGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................

11.75

..................................TGACAACGTCGAACAGGTGAGTCGGT...........................................................................................

10.25

..........................................TCGAACAGGTGAGTCGGTGTCCACA....................................................................................

7.50

............................................GAACAGGTGAGTCGGTGTCCACAAGG.................................................................................

5.25

...........................................CGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................

5.00

.....................................CAACGTCGAACAGGTGAGTCGGTG..........................................................................................

4.75

...................................................TGAGTCGGTGTCCACAAGGTAGGTA...........................................................................

4.25

..........................................TCGAACAGGTGAGTCGGTGTCCAC.....................................................................................

3.75

..................................TGACAACGTCGAACAGGTGAGTCG.............................................................................................

3.25

..........................................TCGAACAGGTGAGTCGGTGTCCACAAG..................................................................................

3.00

...................................GACAACGTCGAACAGGTGAGTCGGTG..........................................................................................

2.75

.................................................GGTGAGTCGGTGTCCACAAGGTAGG.............................................................................

2.75

...................................GACAACGTCGAACAGGTGAGTCGG............................................................................................

2.00

......................................................................................................................TGCTTCAGCGGATCCTGTTCCCTTGG.......

2.00

.............................................................TCCACAAGGTAGGTATGCGAAACTTG................................................................

2.00

...........................................CGAACAGGTGAGTCGGTGTCCACAAG..................................................................................

1.75

.................................................GGTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................

1.75

...........................................CGAACAGGTGAGTCGGTGTCCACA....................................................................................

1.75

.............................................................TCCACAAGGTAGGTATGCGAAACTT.................................................................

1.67

...........................................................TGTCCACAAGGTAGGTATGCGAAACT..................................................................

1.67

..........................................TCGAACAGGTGAGTCGGTGTCCACAA...................................................................................

1.50

................................................................................................................................GATCCTGTTCCCTTGGTGGATGC

1.33

...................................GACAACGTCGAACAGGTGAGTCGGT...........................................................................................

1.25

.....................................CAACGTCGAACAGGTGAGTCGGT...........................................................................................

1.25

.................................................GGTGAGTCGGTGTCCACAAGGTAGGT............................................................................

1.25

................................................AGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................

1.25

..........................................TCGAACAGGTGAGTCGGTGTCCA......................................................................................

1.25

..........................................................................................................................TCAGCGGATCCTGTTCCCTTGGTGGATA.

1.00

...............................TAATGACAACGTCGAACAGGTGAGT...............................................................................................

1.00

...................................................TGAGTCGGTGTCCACAAGGTAGGTAT..........................................................................

1.00

..................................TGACAACGTCGAACAGGTGAGTCGGTGT.........................................................................................

1.00

...........................................................TGTCCACAAGGTAGGTATGCGAAACTT.................................................................

1.00

.....................................CAACGTCGAACAGGTGAGTCGG............................................................................................

1.00

.........................................................................................................................TTCAGCGGATCCTGTTCCCTTGGTGGA...

1.00

........................................CGTCGAACAGGTGAGTCGGTGTCCA......................................................................................

0.75

....................................ACAACGTCGAACAGGTGAGTCGGTG..........................................................................................

0.75

...................................................TGAGTCGGTGTCCACAAGGTAGGT............................................................................

0.75

..................................TGACAACGTCGAACAGGTGAGTC..............................................................................................

0.75

..............................................ACAGGTGAGTCGGTGTCCACAAGG.................................................................................

0.75

..........................................TCGAACAGGTGAGTCGGTGTCC.......................................................................................

0.75

...............................................CAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................

0.75

.............................................AACAGGTGAGTCGGTGTCCACAAGGT................................................................................

0.75

.......................................................TCGGTGTCCACAAGGTAGGTATGCG.......................................................................

0.67

........................................................CGGTGTCCACAAGGTAGGTATGCGAAA....................................................................

0.67

..CCATCTCAGATAATGGCACAATGCCC...........................................................................................................................

0.50

.....................................CAACGTCGAACAGGTGAGT...............................................................................................

0.50

.......TCAGATAATGGCACAATGCCCTGC........................................................................................................................

0.50

...................................................TGAGTCGGTGTCCACAAGG.................................................................................

0.50

..............................................ACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................

0.50

...................................................TGAGTCGGTGTCCACAAGGTAGGTATG.........................................................................

0.50

................................................AGGTGAGTCGGTGTCCACAAGGTAG..............................................................................

0.50

...............................................CAGGTGAGTCGGTGTCCACAAGG.................................................................................

0.50

...........................................CGAACAGGTGAGTCGGTGTCCAC.....................................................................................

0.50

...............................................CAGGTGAGTCGGTGTCCACAAGGTA...............................................................................

0.50

.....................................CAACGTCGAACAGGTGATTCGGTG..........................................................................................

0.50

................................................................................................................................GATCCTGTTCCCTTGGTGGATT.

0.33

...........................................................TGTCCACAAGGTAGGTATGCGAAAC...................................................................

0.33

........................................................CGGTGTCCACAAGGTAGGTATGCGA......................................................................

0.33

.............................................................TCCACAAGGTAGGTATGCGAAACT..................................................................

0.33

......................................................GTCGGTGTCCACAAGGTAGGTATGCGA......................................................................

0.33

........CAGATAATGGGACAATGCCCTGC........................................................................................................................

0.33

..............................................................CCACAAGGTAGGTATGCGAAACTT.................................................................

0.33

.....................................................TTTCGGTGTCCACAAGGTAGGTATGCGA......................................................................

0.33

............................................................GTCCACAAGGTAGGTATGCGAAACTT.................................................................

0.33

............................................................GTCCACAAGGTAGGTATGCGAAACT..................................................................

0.33

.................................................GGTGAGTCGGTGTCCACAAGGTAG..............................................................................

0.25

..................................TGACAACGTCGAACAGGTGAG................................................................................................

0.25

.....................................CAACGTCGAACAGGTGAGTCG.............................................................................................

0.25

....................................................GAGTCGGTGTCCACAAGGTAGGTA...........................................................................

0.25

............................................GAACAGGTGAGTCGGTGTCCACAAGGT................................................................................

0.25

...........................................CGAACAGGTGAGTCGGTGTCCA......................................................................................

0.25

.....................................CAACGTCGAACAGGTGAGTCGGTGTT........................................................................................

0.25

......................................AACGTCGAACAGGTGAGTCGGTG..........................................................................................

0.25

.....................................CAACGTCGAACAGGAGAGTCGGT...........................................................................................

0.25

..........................................TCGAACAGGTGAGTCGATGTCCACA....................................................................................

0.25

..................................TGACAACGTCGAACAGGTGA.................................................................................................

0.25

.........................................GTCGAACAGGTGAGTCGG............................................................................................

0.25

..........................................TCGAACAGGTGAGTCGGT...........................................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGTT..........................................................................................

0.25

..................................TGACAACTTCGAACAGGTGAGTCGGTG..........................................................................................

0.25

..........................................TCGAACAGGTGAGTCGGTGTCCACAT...................................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGTA..........................................................................................

0.25

...............................................CAGGTGAGTCGGTGTCCACAAGGT................................................................................

0.25

...........................................CGAACAGGTGAGTCGGTG..........................................................................................

0.25

.............................................AGCAGGTGAGTCGGTGTCCACAAGG.................................................................................

0.25

.......................................................TCGGTGTCCACAAGGTAGGTATGC........................................................................

0.25

.................................................GGTGAGTCGGTGTCCACAAGGTAGGTTC..........................................................................

0.25

.........................................GTCGAACAGGTGAGTCGGTGTC........................................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGC...........................................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGTGG.........................................................................................

0.25

...................................GACAAAGTCGAACAGGTGAGTCGGTC..........................................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGTTT.........................................................................................

0.25

..........................................TCGAACAGGTGAGTCGGTGTCCACTGA..................................................................................

0.25

.................................CTGACAACGTCGAACAGGTGAGTCG.............................................................................................

0.25

..................................TGACAACGTCGAACAGCTGAGTCGG............................................................................................

0.25

.................................ATGACAACGTCGAACAGGTGAGT...............................................................................................

0.25

........................................................CGGTGTCCACAAGGTAGGTA...........................................................................

0.25

.............................................AACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCAG............................................................................................

0.25

.................................................GGTGAGTCGGTGTCCACAAGGTAGGTT...........................................................................

0.25

...................................................TGAGTCGGTGTCCACAAGGTAGGTATT.........................................................................

0.25

.....................................CAACGTCGAACAGGTGAGTCGGTGT.........................................................................................

0.25

..............................................ACAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................

0.25

..................................................GTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................

0.25

..............................................ACAGGTGAGTCGGTGTCCACAAGGA................................................................................

0.25

.................................GTGACAACGTCAAACAGGTGAGTCGGT...........................................................................................

0.25

.................................ATGACAACGTCGAACAGGTGAGTCG.............................................................................................

0.25

..................................TGACAACGTCGAACAGGT...................................................................................................

0.25

................................................AGGTGAGTCGGTGTCCACAAGGTATAGA...........................................................................

0.25

........................................CGTCGAACAGGTGAGTCGGTGTCCAC.....................................................................................

0.25

..................................TGACAACGTCGAACAGGTG..................................................................................................

0.25

.................................................GGTGAGTCGGTGTCCACAAGGTAGGTTT..........................................................................

0.25

....................................................GAGTCGGTGTCCACAAGGTAGGTATT.........................................................................

0.25

...................................................TGAGTCCGTGTCCACAAGGTAGGT............................................................................

0.25

.............................................AACAGGTGAGTAGGTGTCCACAAGG.................................................................................

0.25

............................................GAACAGGTGAGTCGGTGTCCAC.....................................................................................

0.25

...........................................CGAACAGGTGAGTCGGTGTCCACAATA.................................................................................

0.25

....................................ACAACGTCGAACAGGTGAGTCGGT...........................................................................................

0.25

...................................................TGAGTCGGTGTCCACAAGGTAGGC............................................................................

0.25

........................................CGTCGAACAGGTGAGTCGGTGTCCAGAA...................................................................................

0.25

....................................................GAGTCGGTGTCCACAAGGTAGTTA...........................................................................

0.25

...................................GACAACGTCGAACAGGTGAGT...............................................................................................

0.25

....................................................GAGTCGGTGTCCACAAGGTAGGTATC.........................................................................

0.25

..................................TGACAACGTCGAACAGGTGAGTCGGTAA.........................................................................................

0.25

....................................ACAACGTCGAACAGGTGAGTCG.............................................................................................

0.25

.................................................GGTGAGTCGGTGTCCACAAGG.................................................................................

0.25

..................................TGACAACGTCGAACAGGTGGGTCGGT...........................................................................................

0.25

......................................................GTCGGTGTCCACAAGGTAGGTATG.........................................................................

0.25

..........................................TCGAACAGGTGAGTCGGTG..........................................................................................

0.25

..................................................GTGAGTCGGTGTCCACAAGGTAGG.............................................................................

0.25

...........................................CGAACAGGTGAGTCGGTGTACACAAGG.................................................................................

0.25

.............................................AACAGGTGAGTCGGTGTCCACA....................................................................................

0.25

......................................AACGTCGAACAGGTGAGTCGGTGTCCA......................................................................................

0.25

..........................................TCGAACAGGTGAGTCGGTGTCCACAAT..................................................................................

0.25

...............................................CAGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................

0.25

........................................CGTCGAACAGGTGAGTCGGTG..........................................................................................

0.25

.............................................AACAGGTGAGTCGGCGTCCACAAGG.................................................................................

0.25

...........................................CTAACAGGTGAGTCGGTGTCCACAA...................................................................................

0.25

GAGGTAGAGTCTATTACCGTGTTACGGGACGATTACTGTTGCAGCTTGTCCACTCAGCCACAGGTGTTCCATCCATACGCTTTGAACAGAAAATAAGCGTCTAACCTGTTTTGCTAGAACGAAGTCGCCTAGGACAAGGGAACCACCTACG ************************************************........(((.....(((((((((.......))))))))).....)))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V117 male body	V119 head	M020 head	V118 embryo
..............................................................................................................GTGCTAGAACGAAGTGGCG......................	19	3	1	21.00	21	16	5	0	0	0
...............................................................................................................TGCTAGAACGAAGTGGCGG.....................	19	3	6	3.50	21	10	9	1	1	0
...............................................................................................................TGCTAGAACGAAGTGGCG......................	18	2	1	3.00	3	3	0	0	0	0
..............................................................................................................GTGCTAGAACGAAGTGGC.......................	18	2	1	2.00	2	2	0	0	0	0
...............................................GTCCACTCAGCCACAGGTGTTCCA................................................................................	24	0	4	1.50	6	6	0	0	0	0
......................TACGGGACGATTACTGTTGCAG...........................................................................................................	22	0	1	1.00	1	1	0	0	0	0
.............................CGATTACTGTTGCAGCTTGTCCAC..................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.....................................GTTGCAGCTTGTCCACTCAGCCAC..........................................................................................	24	0	4	0.75	3	3	0	0	0	0
..........................................................CACAGGTGTTCCATCCATACGC.......................................................................	22	0	3	0.67	2	2	0	0	0	0
................................................................................................................GCTAGAACGAAGTGGCGG.....................	18	3	20	0.60	12	12	0	0	0	0
.....................................GTTGCAGCTTGTCCACTCAGCCACAGGT......................................................................................	28	0	4	0.50	2	2	0	0	0	0
.............................................................................................................................CGCCTCGGGCAAGGGAAC........	18	2	2	0.50	1	0	0	1	0	0
..................................................CACTCAGCCACAGGTGTTCCAT...............................................................................	22	0	4	0.50	2	2	0	0	0	0
..........................................AGCTTGTCCACTCAGCCACAG........................................................................................	21	0	4	0.50	2	2	0	0	0	0
................................................TCCACTCAGCCACAGGTGTTCCA................................................................................	23	0	4	0.50	2	2	0	0	0	0
..............................................TGTCCACTCAGCCACAGGTGTTCCAT...............................................................................	26	0	4	0.50	2	1	0	0	1	0
....................................................CTCAGCCACAGGTGTTCCATCCAT...........................................................................	24	0	4	0.50	2	2	0	0	0	0
.................................................CCACTCAGCCACAGGTGTTCCATCCAT...........................................................................	27	0	4	0.50	2	2	0	0	0	0
...................................................ACTCAGCCACAGGTGTTCCATCCAT...........................................................................	25	0	4	0.50	2	2	0	0	0	0
...........................................................................................AAAAAGCGTCTAACCTCTTTTGCT....................................	24	2	3	0.33	1	1	0	0	0	0
...........................................................ACAGGTGTTCCATCCATACGC.......................................................................	21	0	3	0.33	1	1	0	0	0	0
.......................................................AGCCACAGGTGTTCCATCCATACGCT......................................................................	26	0	3	0.33	1	1	0	0	0	0
......................................................CAGCCACAGGTGTTCCATCCATACGC.......................................................................	26	0	3	0.33	1	1	0	0	0	0
.......................................................AGCCACAGGTGTTCCATCCATACGC.......................................................................	25	0	3	0.33	1	1	0	0	0	0
.....................................................ACAGCCACAGGTGTTCCATCCATACGCT......................................................................	28	1	3	0.33	1	1	0	0	0	0
........................................................GCCACAGGTGTTCCATCCATACGC.......................................................................	24	0	3	0.33	1	1	0	0	0	0
.........................................................CCACAGGTGTTCCATCCATACGC.......................................................................	23	0	3	0.33	1	1	0	0	0	0
.................................................CCACTCAGCCACAGGTGTTCCATCCA............................................................................	26	0	4	0.25	1	1	0	0	0	0
...................................................ACTCAGCCACAGGTGTTCCATCCA............................................................................	24	0	4	0.25	1	1	0	0	0	0
.......................................TGCAGCTTGTCCACTCAGCCACAGGTGT....................................................................................	28	0	4	0.25	1	1	0	0	0	0
.........................................................CCACAGGTGTTCCATCCATAGC........................................................................	22	2	4	0.25	1	1	0	0	0	0
.......................................................AGCCACAGGTGTTCCATCCATACG........................................................................	24	0	4	0.25	1	1	0	0	0	0
...............................................GTCCACTCAGCCACAGGTGTTCCATCCAT...........................................................................	29	0	4	0.25	1	1	0	0	0	0
................................................TCCACTCAGCCACAGCTGTTCCA................................................................................	23	1	4	0.25	1	1	0	0	0	0
..............................................TGTCCACTCAGCCACAGGTGTTC..................................................................................	23	0	4	0.25	1	1	0	0	0	0
............................................CTTGTCCACTCAGCCACAGGTGTTCCA................................................................................	27	0	4	0.25	1	1	0	0	0	0
...............................................GTCCACTCAGCCACAGGTGTTCC.................................................................................	23	0	4	0.25	1	1	0	0	0	0
.........................................CAGCTTGTCCACTCAGCCACAGGTGTT...................................................................................	27	0	4	0.25	1	1	0	0	0	0
................................................TCCACTCAGCCACAGGTGTTCCAT...............................................................................	24	0	4	0.25	1	1	0	0	0	0
..............................................TGTCCACTCAGCCACGGGTGTTCCA................................................................................	25	1	4	0.25	1	1	0	0	0	0
........................................GCAGCTTGTCCACTCAGCCACA.........................................................................................	22	0	4	0.25	1	1	0	0	0	0
.............................................TTGTCCACTCAGCCACAGGTGTTCCA................................................................................	26	0	4	0.25	1	1	0	0	0	0
.......................................TGCAGCTTGTCCACTCAGCCACAGGT......................................................................................	26	0	4	0.25	1	0	0	0	0	1
..............................................TGTCCACTCAGCCACAGGTGTTCCA................................................................................	25	0	4	0.25	1	1	0	0	0	0
..................................................CACTCAGCCACAGGTGTTCCA................................................................................	21	0	4	0.25	1	1	0	0	0	0
................................................TCCACTCAGCCGGAGGTG.....................................................................................	18	2	5	0.20	1	1	0	0	0	0
.............................................................................................................AGTGCTAGAACGAAGTGGC.......................	19	3	12	0.17	2	1	1	0	0	0
............................................................................................................GATTGCTAGAACGAAGTGG........................	19	3	15	0.07	1	1	0	0	0	0

GAGGTAGAGTCTATTACCGTGTTACGGGACGATTACTGTTGCAGCTTGTCCACTCAGCCACAGGTGTTCCATCCATACGCTTTGAACAGAAAATAAGCGTCTAACCTGTTTTGCTAGAACGAAGTCGCCTAGGACAAGGGAACCACCTACG
**************************************************........(((.....(((((((((.......))))))))).....)))..**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V117
male body

V119
head

M020
head

V118
embryo

..............................................................................................................GTGCTAGAACGAAGTGGCG......................

21.00

...............................................................................................................TGCTAGAACGAAGTGGCGG.....................

3.50

...............................................................................................................TGCTAGAACGAAGTGGCG......................

3.00

..............................................................................................................GTGCTAGAACGAAGTGGC.......................

2.00

...............................................GTCCACTCAGCCACAGGTGTTCCA................................................................................

1.50

......................TACGGGACGATTACTGTTGCAG...........................................................................................................

1.00

.............................CGATTACTGTTGCAGCTTGTCCAC..................................................................................................

1.00

.....................................GTTGCAGCTTGTCCACTCAGCCAC..........................................................................................

0.75

..........................................................CACAGGTGTTCCATCCATACGC.......................................................................

0.67

................................................................................................................GCTAGAACGAAGTGGCGG.....................

0.60

.....................................GTTGCAGCTTGTCCACTCAGCCACAGGT......................................................................................

0.50

.............................................................................................................................CGCCTCGGGCAAGGGAAC........

0.50

..................................................CACTCAGCCACAGGTGTTCCAT...............................................................................

0.50

..........................................AGCTTGTCCACTCAGCCACAG........................................................................................

0.50

................................................TCCACTCAGCCACAGGTGTTCCA................................................................................

0.50

..............................................TGTCCACTCAGCCACAGGTGTTCCAT...............................................................................

0.50

....................................................CTCAGCCACAGGTGTTCCATCCAT...........................................................................

0.50

.................................................CCACTCAGCCACAGGTGTTCCATCCAT...........................................................................

0.50

...................................................ACTCAGCCACAGGTGTTCCATCCAT...........................................................................

0.50

...........................................................................................AAAAAGCGTCTAACCTCTTTTGCT....................................

0.33

...........................................................ACAGGTGTTCCATCCATACGC.......................................................................

0.33

.......................................................AGCCACAGGTGTTCCATCCATACGCT......................................................................

0.33

......................................................CAGCCACAGGTGTTCCATCCATACGC.......................................................................

0.33

.......................................................AGCCACAGGTGTTCCATCCATACGC.......................................................................

0.33

.....................................................ACAGCCACAGGTGTTCCATCCATACGCT......................................................................

0.33

........................................................GCCACAGGTGTTCCATCCATACGC.......................................................................

0.33

.........................................................CCACAGGTGTTCCATCCATACGC.......................................................................

0.33

.................................................CCACTCAGCCACAGGTGTTCCATCCA............................................................................

0.25

...................................................ACTCAGCCACAGGTGTTCCATCCA............................................................................

0.25

.......................................TGCAGCTTGTCCACTCAGCCACAGGTGT....................................................................................

0.25

.........................................................CCACAGGTGTTCCATCCATAGC........................................................................

0.25

.......................................................AGCCACAGGTGTTCCATCCATACG........................................................................

0.25

...............................................GTCCACTCAGCCACAGGTGTTCCATCCAT...........................................................................

0.25

................................................TCCACTCAGCCACAGCTGTTCCA................................................................................

0.25

..............................................TGTCCACTCAGCCACAGGTGTTC..................................................................................

0.25

............................................CTTGTCCACTCAGCCACAGGTGTTCCA................................................................................

0.25

...............................................GTCCACTCAGCCACAGGTGTTCC.................................................................................

0.25

.........................................CAGCTTGTCCACTCAGCCACAGGTGTT...................................................................................

0.25

................................................TCCACTCAGCCACAGGTGTTCCAT...............................................................................

0.25

..............................................TGTCCACTCAGCCACGGGTGTTCCA................................................................................

0.25

........................................GCAGCTTGTCCACTCAGCCACA.........................................................................................

0.25

.............................................TTGTCCACTCAGCCACAGGTGTTCCA................................................................................

0.25

.......................................TGCAGCTTGTCCACTCAGCCACAGGT......................................................................................

0.25

..............................................TGTCCACTCAGCCACAGGTGTTCCA................................................................................

0.25

..................................................CACTCAGCCACAGGTGTTCCA................................................................................

0.25

................................................TCCACTCAGCCGGAGGTG.....................................................................................

0.20

.............................................................................................................AGTGCTAGAACGAAGTGGC.......................

0.17

............................................................................................................GATTGCTAGAACGAAGTGG........................

0.07

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004511:2096473-2096623 -	dwi_504	CTCCATCTCAGATAATGGCACAATGCCCTGCTAATGACAACGTCGAACAGGTGAGTCGGTGTCCACAAGGTAGGTATGCGAAACTTGTCTTTTATTCGCAGATTGGACAAAACGATCTTGCTTCAGCGGATCCTGTTCCCTTGGTGGATGC

Species

Coordinate

Alignment

droWil2

scf2_1100000004511:2096473-2096623 -

dwi_504

CTCCATCTCAGATAATGGCACAATGCCCTGCTAATGACAACGTCGAACAGGTGAGTCGGTGTCCACAAGGTAGGTATGCGAAACTTGTCTTTTATTCGCAGATTGGACAAAACGATCTTGCTTCAGCGGATCCTGTTCCCTTGGTGGATGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CTCCATCTCAGATAATGGCACAATGCCCTGCTAATGACAACGTCGAACAGGTGAGTCGGTGTCCACAAGGTAGGTATGCGAAACTTGTCTTTTATTCGCAGATTGGACAAAACGATCTTGCTTCAGCGGATCCTGTTCCCTTGGTGGATGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................TGACAACGTCGAACAGGTGAGTCGG............................................................................................	25	4	22.25	89	0	62	6	21	0
..................................TGACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	27	4	18.75	75	1	45	16	13	0
.............................................AACAGGTGAGTCGGTGTCCACAAGG.................................................................................	25	4	13.25	53	0	44	0	9	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	28	4	11.75	47	0	44	2	1	0
..................................TGACAACGTCGAACAGGTGAGTCGGT...........................................................................................	26	4	10.25	41	1	30	2	8	0
..........................................TCGAACAGGTGAGTCGGTGTCCACA....................................................................................	25	4	7.50	30	0	29	0	1	0
............................................GAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	26	4	5.25	21	0	19	1	1	0
...........................................CGAACAGGTGAGTCGGTGTCCACAAGG.................................................................................	27	4	5.00	20	0	19	0	1	0
.....................................CAACGTCGAACAGGTGAGTCGGTG..........................................................................................	24	4	4.75	19	0	12	2	5	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	25	4	4.25	17	0	12	1	4	0
..........................................TCGAACAGGTGAGTCGGTGTCCAC.....................................................................................	24	4	3.75	15	0	13	0	2	0
..................................TGACAACGTCGAACAGGTGAGTCG.............................................................................................	24	4	3.25	13	0	9	0	4	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAG..................................................................................	27	4	3.00	12	0	11	1	0	0
...................................GACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	26	4	2.75	11	0	8	0	3	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	25	4	2.75	11	0	6	1	4	0
...................................GACAACGTCGAACAGGTGAGTCGG............................................................................................	24	4	2.00	8	0	8	0	0	0
......................................................................................................................TGCTTCAGCGGATCCTGTTCCCTTGG.......	26	1	2.00	2	0	2	0	0	0
.............................................................TCCACAAGGTAGGTATGCGAAACTTG................................................................	26	1	2.00	2	0	2	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCACAAG..................................................................................	26	4	1.75	7	0	5	0	2	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	27	4	1.75	7	0	4	1	2	0
...........................................CGAACAGGTGAGTCGGTGTCCACA....................................................................................	24	4	1.75	7	0	4	1	2	0
.............................................................TCCACAAGGTAGGTATGCGAAACTT.................................................................	25	3	1.67	5	0	4	0	1	0
...........................................................TGTCCACAAGGTAGGTATGCGAAACT..................................................................	26	3	1.67	5	0	2	1	2	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAA...................................................................................	26	4	1.50	6	0	4	0	2	0
................................................................................................................................GATCCTGTTCCCTTGGTGGATGC	23	3	1.33	4	0	4	0	0	0
...................................GACAACGTCGAACAGGTGAGTCGGT...........................................................................................	25	4	1.25	5	0	5	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGT...........................................................................................	23	4	1.25	5	2	2	0	1	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGT............................................................................	26	4	1.25	5	0	5	0	0	0
................................................AGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	26	4	1.25	5	0	4	0	1	0
..........................................TCGAACAGGTGAGTCGGTGTCCA......................................................................................	23	4	1.25	5	0	2	0	3	0
..........................................................................................................................TCAGCGGATCCTGTTCCCTTGGTGGATA.	28	1	1.00	1	0	1	0	0	0
...............................TAATGACAACGTCGAACAGGTGAGT...............................................................................................	25	1	1.00	1	0	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTAT..........................................................................	26	4	1.00	4	0	3	0	1	0
..................................TGACAACGTCGAACAGGTGAGTCGGTGT.........................................................................................	28	4	1.00	4	0	0	4	0	0
...........................................................TGTCCACAAGGTAGGTATGCGAAACTT.................................................................	27	3	1.00	3	0	2	0	1	0
.....................................CAACGTCGAACAGGTGAGTCGG............................................................................................	22	4	1.00	4	0	2	0	2	0
.........................................................................................................................TTCAGCGGATCCTGTTCCCTTGGTGGA...	27	1	1.00	1	0	1	0	0	0
........................................CGTCGAACAGGTGAGTCGGTGTCCA......................................................................................	25	4	0.75	3	0	2	0	1	0
....................................ACAACGTCGAACAGGTGAGTCGGTG..........................................................................................	25	4	0.75	3	0	1	0	2	0
...................................................TGAGTCGGTGTCCACAAGGTAGGT............................................................................	24	4	0.75	3	0	3	0	0	0
..................................TGACAACGTCGAACAGGTGAGTC..............................................................................................	23	4	0.75	3	0	2	0	1	0
..............................................ACAGGTGAGTCGGTGTCCACAAGG.................................................................................	24	4	0.75	3	0	3	0	0	0
..........................................TCGAACAGGTGAGTCGGTGTCC.......................................................................................	22	4	0.75	3	0	1	0	2	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	26	4	0.75	3	0	2	0	1	0
.............................................AACAGGTGAGTCGGTGTCCACAAGGT................................................................................	26	4	0.75	3	0	1	0	2	0
.......................................................TCGGTGTCCACAAGGTAGGTATGCG.......................................................................	25	3	0.67	2	0	0	0	2	0
........................................................CGGTGTCCACAAGGTAGGTATGCGAAA....................................................................	27	3	0.67	2	0	1	1	0	0
..CCATCTCAGATAATGGCACAATGCCC...........................................................................................................................	26	2	0.50	1	0	1	0	0	0
.....................................CAACGTCGAACAGGTGAGT...............................................................................................	19	4	0.50	2	0	1	1	0	0
.......TCAGATAATGGCACAATGCCCTGC........................................................................................................................	24	2	0.50	1	0	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGG.................................................................................	19	4	0.50	2	0	1	0	1	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	26	4	0.50	2	0	1	0	1	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTATG.........................................................................	27	4	0.50	2	0	1	0	1	0
................................................AGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	25	4	0.50	2	0	1	0	1	0
...............................................CAGGTGAGTCGGTGTCCACAAGG.................................................................................	23	4	0.50	2	0	2	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCAC.....................................................................................	23	4	0.50	2	0	2	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	25	4	0.50	2	0	2	0	0	0
................................................................................................................................GATCCTGTTCCCTTGGTGGATT.	22	3	0.33	1	0	1	0	0	0
...........................................................TGTCCACAAGGTAGGTATGCGAAAC...................................................................	25	3	0.33	1	0	0	0	1	0
........................................................CGGTGTCCACAAGGTAGGTATGCGA......................................................................	25	3	0.33	1	0	1	0	0	0
.............................................................TCCACAAGGTAGGTATGCGAAACT..................................................................	24	3	0.33	1	0	1	0	0	0
......................................................GTCGGTGTCCACAAGGTAGGTATGCGA......................................................................	27	3	0.33	1	0	1	0	0	0
..............................................................CCACAAGGTAGGTATGCGAAACTT.................................................................	24	3	0.33	1	0	1	0	0	0
............................................................GTCCACAAGGTAGGTATGCGAAACTT.................................................................	26	3	0.33	1	0	1	0	0	0
............................................................GTCCACAAGGTAGGTATGCGAAACT..................................................................	25	3	0.33	1	0	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAG..............................................................................	24	4	0.25	1	0	1	0	0	0
..................................TGACAACGTCGAACAGGTGAG................................................................................................	21	4	0.25	1	0	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCG.............................................................................................	21	4	0.25	1	0	0	0	1	0
....................................................GAGTCGGTGTCCACAAGGTAGGTA...........................................................................	24	4	0.25	1	0	1	0	0	0
............................................GAACAGGTGAGTCGGTGTCCACAAGGT................................................................................	27	4	0.25	1	0	1	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCA......................................................................................	22	4	0.25	1	0	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGTGTT........................................................................................	26	4	0.25	1	0	1	0	0	0
......................................AACGTCGAACAGGTGAGTCGGTG..........................................................................................	23	4	0.25	1	0	1	0	0	0
..................................TGACAACGTCGAACAGGTGA.................................................................................................	20	4	0.25	1	0	0	0	1	0
.........................................GTCGAACAGGTGAGTCGG............................................................................................	18	4	0.25	1	0	1	0	0	0
..........................................TCGAACAGGTGAGTCGGT...........................................................................................	18	4	0.25	1	0	1	0	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTT..........................................................................................	27	4	0.25	1	0	0	0	1	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAT...................................................................................	26	4	0.25	1	0	0	1	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTA..........................................................................................	27	4	0.25	1	0	1	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGT................................................................................	24	4	0.25	1	0	1	0	0	0
...........................................CGAACAGGTGAGTCGGTG..........................................................................................	18	4	0.25	1	0	1	0	0	0
.......................................................TCGGTGTCCACAAGGTAGGTATGC........................................................................	24	4	0.25	1	0	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTTC..........................................................................	28	4	0.25	1	0	1	0	0	0
.........................................GTCGAACAGGTGAGTCGGTGTC........................................................................................	22	4	0.25	1	0	0	0	1	0
..................................TGACAACGTCGAACAGGTGAGTCGGC...........................................................................................	26	4	0.25	1	1	0	0	0	0
..................................TGACAACGTCGAACAGGTGAGTCGGTGG.........................................................................................	28	4	0.25	1	0	0	1	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACTGA..................................................................................	27	4	0.25	1	0	0	1	0	0
.................................ATGACAACGTCGAACAGGTGAGT...............................................................................................	23	4	0.25	1	0	1	0	0	0
........................................................CGGTGTCCACAAGGTAGGTA...........................................................................	20	4	0.25	1	0	1	0	0	0
.............................................AACAGGTGAGTCGGTGTCCACAAGGTA...............................................................................	27	4	0.25	1	0	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGGTAGGTT...........................................................................	27	4	0.25	1	0	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGTATT.........................................................................	27	4	0.25	1	0	1	0	0	0
.....................................CAACGTCGAACAGGTGAGTCGGTGT.........................................................................................	25	4	0.25	1	0	1	0	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGTAG..............................................................................	27	4	0.25	1	0	1	0	0	0
..................................................GTGAGTCGGTGTCCACAAGGTAGGTA...........................................................................	26	4	0.25	1	0	1	0	0	0
..............................................ACAGGTGAGTCGGTGTCCACAAGGA................................................................................	25	4	0.25	1	0	1	0	0	0
.................................ATGACAACGTCGAACAGGTGAGTCG.............................................................................................	25	4	0.25	1	0	1	0	0	0
..................................TGACAACGTCGAACAGGT...................................................................................................	18	4	0.25	1	0	0	0	1	0
........................................CGTCGAACAGGTGAGTCGGTGTCCAC.....................................................................................	26	4	0.25	1	0	0	0	1	0
..................................TGACAACGTCGAACAGGTG..................................................................................................	19	4	0.25	1	0	1	0	0	0
....................................................GAGTCGGTGTCCACAAGGTAGGTATT.........................................................................	26	4	0.25	1	0	1	0	0	0
............................................GAACAGGTGAGTCGGTGTCCAC.....................................................................................	22	4	0.25	1	0	1	0	0	0
...........................................CGAACAGGTGAGTCGGTGTCCACAATA.................................................................................	27	4	0.25	1	0	1	0	0	0
....................................ACAACGTCGAACAGGTGAGTCGGT...........................................................................................	24	4	0.25	1	0	1	0	0	0
...................................................TGAGTCGGTGTCCACAAGGTAGGC............................................................................	24	4	0.25	1	0	1	0	0	0
...................................GACAACGTCGAACAGGTGAGT...............................................................................................	21	4	0.25	1	0	1	0	0	0
....................................................GAGTCGGTGTCCACAAGGTAGGTATC.........................................................................	26	4	0.25	1	0	0	0	1	0
..................................TGACAACGTCGAACAGGTGAGTCGGTAA.........................................................................................	28	4	0.25	1	0	1	0	0	0
....................................ACAACGTCGAACAGGTGAGTCG.............................................................................................	22	4	0.25	1	0	1	0	0	0
.................................................GGTGAGTCGGTGTCCACAAGG.................................................................................	21	4	0.25	1	0	1	0	0	0
......................................................GTCGGTGTCCACAAGGTAGGTATG.........................................................................	24	4	0.25	1	0	1	0	0	0
..........................................TCGAACAGGTGAGTCGGTG..........................................................................................	19	4	0.25	1	0	1	0	0	0
..................................................GTGAGTCGGTGTCCACAAGGTAGG.............................................................................	24	4	0.25	1	0	1	0	0	0
.............................................AACAGGTGAGTCGGTGTCCACA....................................................................................	22	4	0.25	1	0	0	0	1	0
......................................AACGTCGAACAGGTGAGTCGGTGTCCA......................................................................................	27	4	0.25	1	0	1	0	0	0
..........................................TCGAACAGGTGAGTCGGTGTCCACAAT..................................................................................	27	4	0.25	1	0	1	0	0	0
...............................................CAGGTGAGTCGGTGTCCACAAGGTAGG.............................................................................	27	4	0.25	1	0	1	0	0	0
........................................CGTCGAACAGGTGAGTCGGTG..........................................................................................	21	4	0.25	1	0	1	0	0	0

dwi_504

scf2_1100000004511:2096523-2096573 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-6.3	-6.2	-6.2