ID:

dwi_5

 Coordinate:

scf2_1100000004511:7262506-7262577 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.0 -35.9 -35.9

Flybase annnotation

utr3 [utr3_minus_6531]

No Repeatable elements found

Sense Strand Reads

GTATGTGTTTTCTACGCATAAATCTCTCGCATCATATATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTCTATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAAAAGAAGAGACCAAAACAA

***********************************.((((((((((((.((((((((((.((((.((((((((.....(((((....))))).....)))))))))))).)))))))))))).)))).)).)))).************************************ 		Read size # Mismatch Hit Count Total Norm Total M020

head

 V119

head

 V117

male body		 M045

female body

 V118

embryo
...................................................................................................TGAAACCGTCCAAAACTGAGGC................................................... 22 0 1 236519.00 236519 209115 24338 1255 955 856
...................................................................................................TGAAACCGTCCAAAACTGAGG.................................................... 21 0 1 54238.00 54238 23886 27619 1656 956 121
...................................................................................................TGAAACCGTCCAAAACTGAGGCT.................................................. 23 1 1 8157.00 8157 7961 153 12 30 1
...................................................................................................TGAAACCGTCCAAAACTGAGAC................................................... 22 1 1 3446.00 3446 3375 69 2 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCC.................................................. 23 0 1 3320.00 3320 3257 50 3 7 3
...................................................................................................TGAAACCGTCCAAAACTGAG..................................................... 20 0 1 2989.00 2989 2296 554 72 64 3
...................................................................................................TGAAACCGTCCAAAACTGA...................................................... 19 0 1 2269.00 2269 2195 63 1 9 1
...................................................................................................TGAAACCGTCCAAAACTGAGGCTT................................................. 24 2 1 961.00 961 943 11 3 3 1
...................................................................................................TGAAGCCGTCCAAAACTGAGGC................................................... 22 1 1 881.00 881 724 132 14 7 4
...................................................................................................TGAAACCGTCCAAAACTG....................................................... 18 0 1 828.00 828 828 0 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGAGGC................................................... 22 1 1 590.00 590 566 23 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCA.................................................. 23 1 1 563.00 563 339 184 14 25 1
....................................................................................................GAAACCGTCCAAAACTGAGGC................................................... 21 0 1 552.00 552 452 27 1 71 1
...................................................................................................TGAAACCGTCCAAAACTGAGGA................................................... 22 1 1 467.00 467 107 346 7 6 1
...................................................................................................TGAAACCGTCCAAGACTGAGGC................................................... 22 1 1 450.00 450 415 31 0 3 1
...................................................................................................TGAAGCCGTCCAAAACTGAGG.................................................... 21 1 1 377.00 377 132 228 13 4 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCCT................................................. 24 1 1 337.00 337 331 3 1 2 0
...................................................................................................TGAAACCGTCCAAAGCTGAGGC................................................... 22 1 1 282.00 282 230 43 2 6 1
...................................................................................................TGAAACCGTCCAAAACTGG...................................................... 19 1 1 275.00 275 274 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGT................................................... 22 1 1 270.00 270 185 71 8 3 3
...................................................................................................TGAAACCGCCCAAAACTGAGGC................................................... 22 1 1 250.00 250 211 37 2 0 0
...................................................................................................TTAAACCGTCCAAAACTGAGGC................................................... 22 1 1 242.00 242 212 28 0 0 2
...................................................................................................TGAAACCGTCCAAAACTGGGGC................................................... 22 1 1 240.00 240 222 16 0 0 2
...................................................................................................TGAAACCGTCCAAAACTGAGGG................................................... 22 1 1 233.00 233 227 6 0 0 0
...................................................................................................TAAAACCGTCCAAAACTGAGGC................................................... 22 1 1 197.00 197 139 52 1 3 2
...................................................................................................TGAAACCGTCCAAAACTAAGGC................................................... 22 1 1 194.00 194 108 85 0 1 0
...................................................................................................CGAAACCGTCCAAAACTGAGGC................................................... 22 1 1 185.00 185 94 88 2 1 0
...................................................................................................TGAAACCGTCCACAACTGAGGC................................................... 22 1 1 179.00 179 159 19 1 0 0
...................................................................................................TGAAACCATCCAAAACTGAGGC................................................... 22 1 1 176.00 176 103 70 2 1 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCG.................................................. 23 1 1 176.00 176 151 22 0 3 0
...................................................................................................TGAAACCGTCCAAAACTTAGGC................................................... 22 1 1 175.00 175 113 59 2 0 1
...................................................................................................TCAAACCGTCCAAAACTGAGGC................................................... 22 1 1 158.00 158 145 13 0 0 0
.....................................................................................................AAACCGTCCAAAACTGAGGC................................................... 20 0 1 149.00 149 141 4 0 4 0
...................................................................................................TGAAACCGTCCAAGACTGAGG.................................................... 21 1 1 143.00 143 97 43 2 1 0
....................................................................................................GAAACCGTCCAAAACTGAGG.................................................... 20 0 1 141.00 141 32 37 3 69 0
...................................................................................................TGAAACCGTCCAAAACTAAGG.................................................... 21 1 1 130.00 130 10 116 4 0 0
...................................................................................................TGAGACCGTCCAAAACTGAGGC................................................... 22 1 1 128.00 128 99 23 5 0 1
...................................................................................................TGAAACCGTCCAAAAATGAGGC................................................... 22 1 1 120.00 120 46 74 0 0 0
...................................................................................................TGAAACCGTCAAAAACTGAGGC................................................... 22 1 1 119.00 119 48 68 0 0 3
...................................................................................................CGAAACCGTCCAAAACTGAGG.................................................... 21 1 1 112.00 112 8 103 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGAGA.................................................... 21 1 1 110.00 110 25 85 0 0 0
...................................................................................................TGAAACCGTCCAAAGCTGAGG.................................................... 21 1 1 108.00 108 39 63 5 1 0
...................................................................................................TGGAACCGTCCAAAACTGAGGC................................................... 22 1 1 107.00 107 74 28 2 2 1
...................................................................................................TGAAACCGGCCAAAACTGAGGC................................................... 22 1 1 105.00 105 95 8 2 0 0
...................................................................................................TGAAACCGTCCAGAACTGAGG.................................................... 21 1 1 97.00 97 70 25 2 0 0
...................................................................................................TGAAACCGTACAAAACTGAGGC................................................... 22 1 1 96.00 96 20 76 0 0 0
...................................................................................................TAAAACCGTCCAAAACTGAGG.................................................... 21 1 1 94.00 94 16 72 3 2 1
...................................................................................................TGAAACCGTACAAAACTGAGG.................................................... 21 1 1 92.00 92 1 91 0 0 0
...................................................................................................TGAAAACGTCCAAAACTGAGGC................................................... 22 1 1 92.00 92 19 70 2 0 1
...................................................................................................TGAAACCGTCTAAAACTGAGGC................................................... 22 1 1 90.00 90 67 22 0 1 0
...................................................................................................TGAAACCGTCAAAAACTGAGG.................................................... 21 1 1 89.00 89 6 82 1 0 0
...................................................................................................TGAAACCGCCCAAAACTGAGG.................................................... 21 1 1 88.00 88 18 64 5 1 0
...................................................................................................TGAAACCGTCCAAAACTCAGGC................................................... 22 1 1 87.00 87 60 22 2 0 3
...................................................................................................TGAAACTGTCCAAAACTGAGGC................................................... 22 1 1 83.00 83 58 24 0 0 1
...................................................................................................AGAAACCGTCCAAAACTGAGGC................................................... 22 1 1 79.00 79 28 51 0 0 0
...................................................................................................TGAAACCATCCAAAACTGAGG.................................................... 21 1 1 79.00 79 11 68 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAAGC................................................... 22 1 1 76.00 76 30 45 0 1 0
..................................................................................................CTGAAACCGTCCAAAACTGAGGC................................................... 23 1 1 75.00 75 32 39 3 0 1
...................................................................................................TGAAACCGTCCAAAAATGAGG.................................................... 21 1 1 75.00 75 0 74 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGAAG.................................................... 21 1 1 72.00 72 3 67 1 1 0
...................................................................................................TGAAATCGTCCAAAACTGAGGC................................................... 22 1 1 72.00 72 40 31 1 0 0
..................................................CTTAGTTTTCGACGTGTTTTGGT................................................................................................... 23 0 1 71.00 71 5 55 1 0 10
...................................................................................................TGAAAACGTCCAAAACTGAGG.................................................... 21 1 1 69.00 69 1 68 0 0 0
...................................................................................................TTAAACCGTCCAAAACTGAGG.................................................... 21 1 1 67.00 67 30 34 2 1 0
...................................................................................................TGAAACCGTCCATAACTGAGGC................................................... 22 1 1 66.00 66 62 4 0 0 0
...................................................................................................GGAAACCGTCCAAAACTGAGGC................................................... 22 1 1 66.00 66 20 45 0 0 1
...................................................................................................TGAAACCGTCCAAAACTTAGG.................................................... 21 1 1 65.00 65 2 49 13 1 0
...................................................................................................TGAAACCGTCCAAAACTGATGC................................................... 22 1 1 65.00 65 41 22 0 1 1
...................................................................................................TGAAACCTTCCAAAACTGAGGC................................................... 22 1 1 64.00 64 29 33 1 0 1
...................................................................................................TGAAACCGTCCGAAACTGAGGC................................................... 22 1 1 64.00 64 36 19 1 6 2
...................................................................................................TGAAACCGTCCAAAACTGAC..................................................... 20 1 1 64.00 64 64 0 0 0 0
...................................................................................................TGAAACCTTCCAAAACTGAGG.................................................... 21 1 1 63.00 63 26 36 0 1 0
...................................................................................................TGAAACCGTCCAAAACTCAGG.................................................... 21 1 1 62.00 62 9 45 7 0 1
...................................................................................................TGAAACCGTCCAAAACCGAGGC................................................... 22 1 1 61.00 61 37 24 0 0 0
...................................................................................................TGAAACCGTCCAAACCTGAGGC................................................... 22 1 1 59.00 59 14 41 3 0 1
...................................................................................................TGAAACCGTCCAAAACTGAGCC................................................... 22 1 1 58.00 58 19 37 2 0 0
...................................................................................................GGAAACCGTCCAAAACTGAGG.................................................... 21 1 1 55.00 55 2 53 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGCGG.................................................... 21 1 1 53.00 53 2 49 2 0 0
..................................................................................................CTGAAACCGTCCAAAACTGAGG.................................................... 22 1 1 52.00 52 3 46 3 0 0
...................................................................................................TGAAACCGTCCAAAACTGATG.................................................... 21 1 1 51.00 51 11 39 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGGGG.................................................... 21 1 1 50.00 50 18 30 0 2 0
...................................................................................................TGAAACCGTTCAAAACTGAGGC................................................... 22 1 1 50.00 50 37 12 1 0 0
...................................................................................................AGAAACCGTCCAAAACTGAGG.................................................... 21 1 1 49.00 49 5 43 1 0 0
......................................................................................................AACCGTCCAAAACTGAGGC................................................... 19 0 1 48.00 48 44 2 0 2 0
...................................................................................................TGAAACCGTCCAAAACTGACGC................................................... 22 1 1 46.00 46 25 21 0 0 0
...................................................................................................TGGAACCGTCCAAAACTGAGG.................................................... 21 1 1 46.00 46 17 26 1 2 0
...................................................................................................TGAAACCGTCCAAAACTGAGT.................................................... 21 1 1 46.00 46 23 22 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGC.................................................... 21 1 1 45.00 45 18 26 1 0 0
...................................................................................................TGAAACCGACCAAAACTGAGGC................................................... 22 1 1 44.00 44 26 16 1 0 1
.....................................................................................................AAACCGTCCAAAACTGAGG.................................................... 19 0 1 43.00 43 24 19 0 0 0
...................................................................................................TGAGACCGTCCAAAACTGAGG.................................................... 21 1 1 43.00 43 8 33 1 1 0
...................................................................................................TGAAACCGTCCACAACTGAGG.................................................... 21 1 1 42.00 42 22 18 2 0 0
...................................................................................................TGAAACCGTCCAAAATTGAGGC................................................... 22 1 1 41.00 41 26 15 0 0 0
...................................................................................................TGAAACCGTCCAAAACCGAGG.................................................... 21 1 1 40.00 40 6 32 2 0 0
....................................................................................................TAAACCGTCCAAAACTGAGGC................................................... 21 1 1 39.00 39 39 0 0 0 0
...................................................................................................TGAAACCGTCCAACACTGAGGC................................................... 22 1 1 39.00 39 11 26 0 1 1
...................................................................................................TCAAACCGTCCAAAACTGAGG.................................................... 21 1 1 38.00 38 9 28 0 1 0
...................................................................................................TGCAACCGTCCAAAACTGAGGC................................................... 22 1 1 37.00 37 19 16 1 0 1
...................................................................................................TGAACCCGTCCAAAACTGAGGC................................................... 22 1 1 36.00 36 16 17 0 0 3
...................................................................................................TGAAACCGTCCAAAACTGAGTC................................................... 22 1 1 36.00 36 15 15 0 0 6
...................................................................................................TGAAACCCTCCAAAACTGAGGC................................................... 22 1 1 36.00 36 9 25 2 0 0
...................................................................................................TGAAATCGTCCAAAACTGAGG.................................................... 21 1 1 35.00 35 7 27 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCCC................................................. 24 1 1 35.00 35 35 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGACG.................................................... 21 1 1 35.00 35 15 20 0 0 0
...................................................................................................TGAAACCGTCCCAAACTGAGGC................................................... 22 1 1 34.00 34 12 21 0 1 0
...................................................................................................TGAAACCGTCCAAACCTGAGG.................................................... 21 1 1 33.00 33 2 29 2 0 0
...................................................................................................TGAAACCGTCCAAAACTGTGG.................................................... 21 1 1 32.00 32 22 10 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGCGGC................................................... 22 1 1 32.00 32 12 19 1 0 0
...................................................................................................TGAAACCGTCTAAAACTGAGG.................................................... 21 1 1 31.00 31 10 19 1 0 1
...................................................................................................TGAAACTGTCCAAAACTGAGG.................................................... 21 1 1 31.00 31 9 22 0 0 0
...................................................................................................TGAAACCGACCAAAACTGAGG.................................................... 21 1 1 29.00 29 6 23 0 0 0
...................................................................................................TGAAACCGTCCCAAACTGAGG.................................................... 21 1 1 28.00 28 0 27 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGAGGAC.................................................. 23 1 1 28.00 28 28 0 0 0 0
...................................................................................................TGAAACAGTCCAAAACTGAGGC................................................... 22 1 1 27.00 27 19 7 0 0 1
...................................................................................................TGAACCCGTCCAAAACTGAGG.................................................... 21 1 1 26.00 26 2 24 0 0 0
...................................................................................................TGCAACCGTCCAAAACTGAGG.................................................... 21 1 1 26.00 26 3 22 1 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAG..................................................... 20 1 1 25.00 25 23 2 0 0 0
...................................................................................................TGAAACCGTGCAAAACTGAGGC................................................... 22 1 1 23.00 23 18 4 1 0 0
...................................................................................................TGAAACCGTCCAACACTGAGG.................................................... 21 1 1 23.00 23 0 23 0 0 0
..................................................................................................TTGAAACCGTCCAAAACTGAGGC................................................... 23 0 1 23.00 23 20 0 0 3 0
...................................................................................................TGAAACCCTCCAAAACTGAGG.................................................... 21 1 1 23.00 23 5 18 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGCT.................................................. 23 2 1 22.00 22 20 1 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGTGGC................................................... 22 1 1 22.00 22 11 11 0 0 0
...................................................................................................TGAAACCGTTCAAAACTGAGG.................................................... 21 1 1 21.00 21 1 19 1 0 0
...................................................................................................TGAAACCGTCCAAAATTGAGG.................................................... 21 1 1 21.00 21 2 19 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGAGGCT.................................................. 23 2 1 21.00 21 21 0 0 0 0
...................................................................................................TGAAACCGTCCGAAACTGAGG.................................................... 21 1 1 20.00 20 1 10 2 7 0
...................................................................................................TGAAACCGTCGAAAACTGAGGC................................................... 22 1 1 19.00 19 16 2 0 1 0
...................................................................................................TGAAACCGTCCAAAACAGAGG.................................................... 21 1 1 18.00 18 0 18 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGAA.................................................. 23 2 1 17.00 17 14 3 0 0 0
....................................................................................................GAAACCGTCCAAAACTGAGGCT.................................................. 22 1 1 17.00 17 13 0 0 4 0
...................................................................................................TGAAACCGGCCAAAACTGAGG.................................................... 21 1 1 17.00 17 13 3 0 1 0
...................................................................................................TGAAACCGTCCAAAACAGAGGC................................................... 22 1 1 16.00 16 7 9 0 0 0
.................................................................................................TCTGAAACCGTCCAAAACTGAGG.................................................... 23 2 1 15.00 15 1 13 1 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGCC.................................................. 23 1 1 15.00 15 15 0 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGAGGCC.................................................. 23 1 1 15.00 15 15 0 0 0 0
...................................................................................................TGACACCGTCCAAAACTGAGG.................................................... 21 1 1 14.00 14 0 14 0 0 0
...................................................................................................TGAAACCGTCCTAAACTGAGGC................................................... 22 1 1 14.00 14 8 6 0 0 0
...................................................................................................TGAAACCGTCCAAAACTA....................................................... 18 1 1 14.00 14 14 0 0 0 0
...................................................................................................TGTAACCGTCCAAAACTGAGGC................................................... 22 1 1 14.00 14 8 5 0 1 0
...................................................................................................TGAAACCGTCCAAAACTAGG..................................................... 20 2 1 14.00 14 0 13 1 0 0
...................................................................................................TGATACCGTCCAAAACTGAGGC................................................... 22 1 1 14.00 14 11 3 0 0 0
...................................................................................................TGAAACCGTCCAAAACTAGGC.................................................... 21 3 2 13.50 27 18 8 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCCG................................................. 24 1 1 13.00 13 13 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCTTT................................................ 25 3 1 13.00 13 11 2 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGAGGCT.................................................. 23 2 1 12.00 12 12 0 0 0 0
...................................................................................................TGAAACAGTCCAAAACTGAGG.................................................... 21 1 1 12.00 12 4 7 1 0 0
....................................................................................................GAAACCGTCCAAAACTGAGAC................................................... 21 1 1 12.00 12 11 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCTG................................................. 24 2 1 12.00 12 12 0 0 0 0
...................................................................................................TGAAACCGTCCTAAACTGAGG.................................................... 21 1 1 12.00 12 1 11 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCTC................................................. 24 2 1 12.00 12 11 0 0 1 0
...................................................................................................TGACACCGTCCAAAACTGAGGC................................................... 22 1 1 12.00 12 4 7 0 0 1
...................................................................................................TGAATCCGTCCAAAACTGAGGC................................................... 22 1 1 12.00 12 4 7 1 0 0
....................................................................................................GAAACCGTCCAAAACTGAG..................................................... 19 0 1 12.00 12 6 0 0 6 0
...................................................................................................TGAAAGCGTCCAAAACTGAGGC................................................... 22 1 1 11.00 11 10 1 0 0 0
...................................................................................................TGAAACCGTCCAAATCTGAGGC................................................... 22 1 1 11.00 11 6 5 0 0 0
...................................................................................................TGAAACCGTCCATAACTGAGG.................................................... 21 1 1 11.00 11 5 6 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGGGGCT.................................................. 23 2 1 11.00 11 11 0 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGAGAC................................................... 22 2 1 10.00 10 10 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACGGAGGC................................................... 22 1 1 10.00 10 8 2 0 0 0
....................................................................................................GAAACCGTCCAAAACTGAGGCC.................................................. 22 0 1 10.00 10 10 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCTA................................................. 24 1 1 9.00 9 7 1 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGTGAC................................................... 22 2 1 9.00 9 9 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAA..................................................... 20 1 1 9.00 9 5 4 0 0 0
...................................................................................................TGAATCCGTCCAAAACTGAGG.................................................... 21 1 1 9.00 9 0 9 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGGGGCC.................................................. 23 1 1 8.00 8 8 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGAC................................................... 22 2 1 8.00 8 8 0 0 0 0
....................................................................................................GAAACCGTCCAAAACTGAGGCA.................................................. 22 1 1 8.00 8 2 1 0 5 0
.................................................................................................TCTGAAACCGTCCAAAACTGAGGC................................................... 24 2 1 8.00 8 0 8 0 0 0
.....................................................................................................TAACCGTCCAAAACTGAGGC................................................... 20 1 1 8.00 8 6 2 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGT...................................................... 19 1 1 8.00 8 8 0 0 0 0
...................................................................................................TGAAACGGTCCAAAACTGAGGC................................................... 22 1 1 8.00 8 4 4 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGGGAC................................................... 22 2 1 8.00 8 8 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCAT................................................. 24 2 1 8.00 8 3 5 0 0 0
...................................................................................................TGAAACCGTCCAAAGCTGAGGCT.................................................. 23 2 1 8.00 8 7 1 0 0 0
..................................................................................................TGAAAACCGTCCAAAACTGAGGC................................................... 23 2 1 7.00 7 7 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCCA................................................. 24 0 1 7.00 7 3 2 1 1 0
...................................................................................................TGAAACCGTCCAGAACTGAGAC................................................... 22 2 1 7.00 7 7 0 0 0 0
...................................................................................................TGAAACCGTCCAATACTGAGGC................................................... 22 1 1 7.00 7 3 3 1 0 0
.......................................................................................................ACCGTCCAAAACTGAGGC................................................... 18 0 1 7.00 7 7 0 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGAG..................................................... 20 1 1 7.00 7 7 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGGC..................................................... 20 2 1 6.00 6 0 6 0 0 0
...................................................................................................TGAAACCTTCCAAAACTGAGGCT.................................................. 23 2 1 6.00 6 5 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACGGAGG.................................................... 21 1 1 6.00 6 2 4 0 0 0
...................................................................................................TGAAACCGTCCAAAACTAAGGCT.................................................. 23 2 1 6.00 6 5 1 0 0 0
...................................................................................................TGAAACCGCCCAAAACTGAGGCT.................................................. 23 2 1 6.00 6 6 0 0 0 0
...................................................................................................TGAAACCGTCCAAATCTGAGG.................................................... 21 1 1 6.00 6 1 5 0 0 0
...................................................................................................TGAAACCGTGCAAAACTGAGG.................................................... 21 1 1 5.00 5 0 4 1 0 0
...................................................................................................TGTAACCGTCCAAAACTGAGG.................................................... 21 1 1 5.00 5 0 5 0 0 0
...................................................................................................TGAAGCCGTCCAAGACTGAGGC................................................... 22 2 1 5.00 5 5 0 0 0 0
...................................................................................................TCAAACCGTCCAAAACTGAGGCT.................................................. 23 2 1 5.00 5 5 0 0 0 0
...................................................................................................TGAAACGGTCCAAAACTGAGG.................................................... 21 1 1 5.00 5 1 4 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGC...................................................... 19 1 1 5.00 5 4 1 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTG....................................................... 18 1 1 5.00 5 5 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGTT................................................... 22 2 1 5.00 5 3 2 0 0 0
...................................................................................................CGAAACCGTCCAAAACTGAG..................................................... 20 1 1 5.00 5 0 5 0 0 0
...................................................................................................TGAAACCGTCCACAACTGAGGCT.................................................. 23 2 1 5.00 5 5 0 0 0 0
...................................................................................................CGAAACCGTCCAAAACTGAGGCT.................................................. 23 2 1 5.00 5 4 0 1 0 0
...................................................................................................TGAGACCGTCCAAAACTGAGGCT.................................................. 23 2 1 5.00 5 4 1 0 0 0
...................................................................................................TGAAACCGTCCAAAGCTGAG..................................................... 20 1 1 5.00 5 3 0 1 1 0
....................................................................................................TAAACCGTCCAAAACTGAGG.................................................... 20 1 1 5.00 5 3 1 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGAGGTT.................................................. 23 2 1 4.00 4 2 1 0 1 0
...................................................................................................TGAAACCGTCCAAAACTGGGC.................................................... 21 2 1 4.00 4 0 4 0 0 0
...................................................................................................TGAAACCGCCCAAAACTGAGGCC.................................................. 23 1 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCGAAACTGAGGCT.................................................. 23 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGCTT................................................. 24 3 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCAAGGCTGAGGC................................................... 22 2 1 4.00 4 3 1 0 0 0
...................................................................................................TGAAATCGTCCAAAACTGAGGCT.................................................. 23 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTTAGGCC.................................................. 23 1 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGATGCT.................................................. 23 2 1 4.00 4 4 0 0 0 0
...................................................................................................TAAAACCGTCCAAAACTGAGAC................................................... 22 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGTCT.................................................. 23 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAGACCGTCCAAAACTGAG..................................................... 20 1 1 4.00 4 2 1 1 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGAA................................................... 22 2 1 4.00 4 1 3 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGA...................................................... 19 1 1 4.00 4 3 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACCGAGAC................................................... 22 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCGAAAACTGAGG.................................................... 21 1 1 4.00 4 1 2 1 0 0
..................................................................................................TTGAAACCGTCCAAAACTGAGG.................................................... 22 0 1 4.00 4 3 0 0 1 0
...................................................................................................TGAAACCGTCTAAAACTGAGGCT.................................................. 23 2 1 4.00 4 4 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCTTA................................................ 25 2 1 4.00 4 4 0 0 0 0
...................................................TTAGTTTTCGACGTGTTTTGGT................................................................................................... 22 0 1 4.00 4 0 4 0 0 0
...................................................................................................TGAAACCGTACAAAACTGAG..................................................... 20 1 1 4.00 4 0 4 0 0 0
...................................................................................................TGATACCGTCCAAAACTGAGG.................................................... 21 1 1 3.00 3 0 3 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGT................................................... 22 2 1 3.00 3 0 3 0 0 0
...................................................................................................TCAAACCGTCCAAAACTG....................................................... 18 1 1 3.00 3 3 0 0 0 0
...................................................................................................TAAAACCGTCCAAAACTGAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACTGTCCAAAACTGAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAGGACTGAGG.................................................... 21 2 1 3.00 3 2 1 0 0 0
...................................................................................................TGAAGCCGTCCAAAGCTGAGGC................................................... 22 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGGG..................................................... 20 1 1 3.00 3 2 1 0 0 0
...................................................................................................TGGAACCGTCCAAAACTGAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGAGGCC.................................................. 23 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGA...................................................... 19 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGAG..................................................... 20 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAGACTGAGGCA.................................................. 23 2 1 3.00 3 2 1 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGA...................................................... 19 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGCCCAAAACTAAGGC................................................... 22 2 1 3.00 3 1 2 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGCA.................................................. 23 2 1 3.00 3 2 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACTTAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCGAAACTGA...................................................... 19 1 1 3.00 3 2 1 0 0 0
...................................................................................................CGAAACCGTCCAAAACTGAGGA................................................... 22 2 1 3.00 3 0 3 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGA................................................... 22 2 1 3.00 3 0 3 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTAAGG.................................................... 21 2 1 3.00 3 0 3 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAT..................................................... 20 1 1 3.00 3 0 2 1 0 0
.....................................................................................................AAACCGTCCAAAACTGAG..................................................... 18 0 1 3.00 3 2 0 0 1 0
...................................................................................................TGAAACTGTCCAAAACTGAG..................................................... 20 1 1 3.00 3 1 2 0 0 0
..................................................................................................GTGAAACCGTCCAAAACTGAGGC................................................... 23 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGAT.................................................. 23 2 1 3.00 3 0 3 0 0 0
...................................................................................................TGAAACCGGCCAAAACTGAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAATCGTCCAAAACTGAG..................................................... 20 1 1 3.00 3 1 2 0 0 0
...................................................................................................TGAAACCATCCAAAACTGAGGCT.................................................. 23 2 1 3.00 3 3 0 0 0 0
...................................................................................................TAAAACCGTCCAAAACTGAG..................................................... 20 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAGGACTGAGGC................................................... 22 2 1 3.00 3 3 0 0 0 0
..................................................................................................CTGAAACCGTCCAAAACTGAG..................................................... 21 1 1 3.00 3 0 1 1 0 1
...................................................................................................CGAAACCGTCCAAAACTGAGAC................................................... 22 2 1 3.00 3 3 0 0 0 0
...................................................................................................TTAAACCGTCCAAAACTGAGAC................................................... 22 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGGCCAAAACTGAGAC................................................... 22 2 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTAAGAC................................................... 22 2 1 3.00 3 2 0 1 0 0
...................................................................................................TGAAACCGTCTAAAACTGAG..................................................... 20 1 1 3.00 3 2 1 0 0 0
...................................................................................................TGAAACCGTCCAAAAATGAGGCT.................................................. 23 2 1 3.00 3 2 1 0 0 0
...............................TCATATATCCGCAATGGAC.......................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGACC.................................................. 23 1 1 3.00 3 2 1 0 0 0
...................................................................................................TGAAACCGTCCAAAAGTGAGG.................................................... 21 1 1 3.00 3 0 3 0 0 0
...................................................................................................TTAAACCGTCCAAAACTGAGGCC.................................................. 23 1 1 3.00 3 3 0 0 0 0
..................................................................................................TGAAAACCGTCCAAAACTGAGG.................................................... 22 2 1 3.00 3 1 1 1 0 0
................................................................................................ATCTGAAACCGTCCAAAACTGAGGC................................................... 25 3 1 3.00 3 1 2 0 0 0
...................................................................................................TGAAACCGTCCAAAGCTGAGGCC.................................................. 23 1 1 3.00 3 3 0 0 0 0
...................................................................................................TGAAACCGTCAAAAACTGAG..................................................... 20 1 2 2.50 5 0 5 0 0 0
...................................................................................................TCAAACCGTCCAAAACTGAGGCC.................................................. 23 1 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGGCG.................................................. 23 2 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACCGAGGCT.................................................. 23 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGACGT................................................... 22 2 1 2.00 2 2 0 0 0 0
....................................................................................................GAAACCGTCCAAGACTGAGGC................................................... 21 1 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGCC................................................... 22 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAGGCAC................................................. 24 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCACAACTGAGGCA.................................................. 23 2 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCGAAACTG....................................................... 18 1 1 2.00 2 2 0 0 0 0
.....................................................................................................AAACCGTCCAAAACTGAGGCT.................................................. 21 1 1 2.00 2 2 0 0 0 0
..............................ATCATATATCCGCAATGGAC.......................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGATGCC.................................................. 23 1 1 2.00 2 1 1 0 0 0
......................................................................................................AACCGTCCAAAACTGAGGCC.................................................. 20 0 1 2.00 2 2 0 0 0 0
....................................................................................................GAAACCGTCCAAAACTTAGGC................................................... 21 1 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAAT.................................................... 21 2 1 2.00 2 0 2 0 0 0
...................................................................................................CGAAACCGTCCAAAACTGAGGCA.................................................. 23 2 1 2.00 2 0 2 0 0 0
...................................................................................................TGAAACCGTCCAAAACTAAGGCTT................................................. 24 3 1 2.00 2 2 0 0 0 0
...................................................................................................GGAAACCGTCCAAAACTGAG..................................................... 20 1 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCAAAACTCAGAC................................................... 22 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAGCTGAGAC................................................... 22 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTGAAA.................................................... 21 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGAGC.................................................... 21 2 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCACAACTGA...................................................... 19 1 1 2.00 2 2 0 0 0 0
...................................................................................................TTAAACCGTCCAAAACTGA...................................................... 19 1 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAAACGTCCAAAACTGAG..................................................... 20 1 1 2.00 2 0 2 0 0 0
...................................................................................................TTAAGCCGTCCAAAACTGAGGC................................................... 22 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACTTAGGCAA................................................. 24 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAGCCGTCCAAAACTGG...................................................... 19 2 1 2.00 2 2 0 0 0 0
...................................................................................................TCAAACCGTCCAAAACTGA...................................................... 19 1 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACAGTCCAAAACTGAGGCT.................................................. 23 2 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCCAAAACCGAGGCC.................................................. 23 1 1 2.00 2 2 0 0 0 0
...................................................................................................TGAAACCGTCAAAAACTGAGGA................................................... 22 2 1 2.00 2 1 1 0 0 0
...................................................................................................TGAAACCGTCCAGAACTGAGGCCT................................................. 24 2 1 2.00 2 2 0 0 0 0

Anti-sense strand reads

CATACACAAAAGATGCGTATTTAGAGAGCGTAGTATATAGGCGTTACCTGGAATCAAAAGCTGCACAAAACCACACGAATCCTTCAAAAGATAAGGCTAACTTTGGCAGGTTTTGACTCCGGTTAACAACACTATCTTCGTTGGTACTTTTGTTTTCTTCTCTGGTTTTGTT

************************************.((((((((((((.((((((((((.((((.((((((((.....(((((....))))).....)))))))))))).)))))))))))).)))).)).)))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 V117

male body
....................................AGAGCTGTTACCTGGAATC..................................................................................................................... 19 3 20 0.95 19 15 4
......................................................CGAAAGCTGCACAACACGA................................................................................................... 19 3 20 0.15 3 3 0
....................................................................................................CTTTGGGAGGTTGTGAATCC.................................................... 20 3 8 0.13 1 1 0
.............................................................................................AGGCTAAATTTGGCATGC............................................................. 18 3 20 0.10 2 2 0
....................................................................................................CTTTGGGAGGTTGTGACTCG.................................................... 20 3 13 0.08 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004511:7262456-7262627 + dwi_5 confident GT----------ATGTG-TTTTCTACGCATAAAT-------C-TCTCGCATCATA-TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAAAAGAAGAGACCAAAA----------------------CAA-----------------------------------
droVir3 scaffold_13049:17242393-17242537 + dvi-mir-957 Known_mirbase AA-----------TA---------------ATATTATTTCCTA--A-CTAG-ATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA--------AA------TACTAAA-------------------ACAA------------------------------------AA
droMoj3 scaffold_6680:22273666-22273818 + dmo_6 confident GA----------AATCG-TTTTCT-----------------TC----CCAC-AAAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAGAA----GGAAAACAG-ACAAAAG------------------ACCA------------------------------------AA
droGri2 scaffold_15110:14942020-14942125 - dgr_26 candidate-rescued A-------------------------------------------------------TACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA------------------------------------------------------------------------------------
dp5 XR_group8:186453-186581 - dps-mir-957 Known_mirbase --------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACC----AAAAAAAAATATTAATAAT----------------------A-----------------------------------
droPer2 scaffold_80:80386-80535 + dpe_9 confident --------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACC----AAAAAAAAATATTAATAATAATAAGAAAGAAACCAAAA-AAA-----------------------------------
droAna3 scaffold_13337:22247692-22247780 - dan_6 confident --------------------------------------------------------TGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------
droBip1 scf7180000396426:572739-572827 + --------------------------------------------------------TGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------
droKik1 scf7180000302808:850774-850896 - A-------------------------------------------------------TGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTACCAAACCAAGTAAAAAG-------------------------------------------------------------------
droFic1 scf7180000453830:518561-518667 + AA------------ATGT-----------------------CA--AAGTAGAGTGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CGA-TATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-----------------------------------------------------------------------------------------------------
droEle1 scf7180000491199:234579-234714 + AAGTGCCTTTCGATGTGAACATCGAAGAACAT-------CTTT--ATATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------
droRho1 scf7180000779133:19435-19594 + AG----------ATCTGATCATCAAAGAAAAT-------CTTT--AAATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAACC----AAAAAACGATACTAA--------------------------------------------------------------
droBia1 scf7180000302377:741994-742189 + GA-----------TTTGATCATCCACGAAA-T-------CCCA--GCGTAGAATGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTG-AATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTAACC----AAAATGCGATACCAACG------------------------AGCGCGTCCTTTCCGTTCGTTTTATTTGCAGTCCAC
droTak1 scf7180000415491:455677-455837 - GA-----------TTCGATCATCCACGAAAAT-------CCTA--ATGTAGCGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACC----AAA-GGCGATACCAGCG------------------------A-----------------------------------
droEug1 scf7180000409801:98877-98998 - --------------TTGTTCATCCAAGAATAC-------CCTG--ATGTGGAGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------
dm3 chr3L:22511269-22511420 - dme-mir-957 Known_mirbase -------------------CATCCAAGAATATAT-------TAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTATCC----AAAAAGCGATACCAA--------------------------------------------------------------
droSim2 3l:22030947-22031105 - dsi-mir-957 Known_mirbase A------------TCTGTTCATCCAAGAATGCAT-------TGT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAAAAGCGATACCAA--------------------------------------------------------------
droSec2 scaffold_11:2446943-2447101 - dse_9 confident A------------TCTGTTCATCCAAGAATGCAT-------TGT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAAAAGAGATACCAA--------------------------------------------------------------
droYak3 3L:22971969-22972117 - dya_2 confident G------------TCTGTTCATCCAAGAATATAT-------CAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTA-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTATCC----AAACA------------------------------------------------------------------------
droEre2 scaffold_4784:22180736-22180885 - der_4 confident GA-----------ACTGTTCATCTAAGAATGTAC-------CAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAACA------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
GT----------ATGTG-TTTTCTACGCATAAAT-------C-TCTCGCATCATA-TATCCGCAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTTAGGAAGTTTTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGTTGTGATAGAAGCAACCATGAAAACAAAAGAAGAGACCAAAA----------------------CAA-----------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................221236519.00236519209115955125585624338
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21154238.005423823886956165612127619
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................2318157.008157796130121153
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................2313320.003320325773350
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2012989.002989229664723554
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................1912269.002269219591163
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241961.0096194333111
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................181828.008288280000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231563.0056333925141184
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211552.00552452711127
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221467.00467107671346
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................241337.003373312103
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................191275.002752740001
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221270.0027018538371
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................221233.002332270006
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................231176.0017615130022
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................201149.001491414004
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201141.0014132693037
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................211110.001102500085
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23171.00715011055
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................20164.0064640000
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................19148.0048442002
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21146.00462301022
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21145.00451801026
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19143.00432400019
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCC..........................................................................................................24135.0035350000
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................23123.0023203000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................23117.0017140003
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................22117.0017134000
........................................................................................................................TGAAACCGTCCAAAACTA................................................................................................................18114.0014140000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCG..........................................................................................................24113.0013130000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................25113.0013110002
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTG..........................................................................................................24112.0012120000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTC..........................................................................................................24112.0012111000
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19112.001266000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCC...........................................................................................................22110.0010100000
........................................................................................................................TGAAACCGTCCAAAACTGAA..............................................................................................................2019.00950004
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2218.00825001
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................1918.00880000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................2418.00830005
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................2417.00731102
............................................................................................................................ACCGTCCAAAACTGAGGC............................................................................................................1817.00770000
........................................................................................................................TGAAACCGTCCAAAACTGGC..............................................................................................................2016.00600006
........................................................................................................................TGAAACCGTCCAAAACTGC...............................................................................................................1915.00540001
........................................................................................................................TGAAACCGTCCAAAACTGAGTT............................................................................................................2215.00530002
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................2314.00421001
........................................................................................................................TGAAACCGTCCAAAACTGAGAA............................................................................................................2214.00410003
.......................................................................................................................TTGAAACCGTCCAAAACTGAGG.............................................................................................................2214.00431000
.......................................................................TTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................2214.00400004
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................2013.00300102
..........................................................................................................................AAACCGTCCAAAACTGAG..............................................................................................................1813.00321000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAT...........................................................................................................2313.00300003
..................................................TCATA-TATCCGCAATGGAC....................................................................................................................................................................................1913.00330000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAC..........................................................................................................2412.00220000
..........................................................................................................................AAACCGTCCAAAACTGAGGCT...........................................................................................................2112.00220000
.................................................ATCATA-TATCCGCAATGGAC....................................................................................................................................................................................2012.00220000
...........................................................................................................................AACCGTCCAAAACTGAGGCC...........................................................................................................2012.00220000
........................................................................................................................TGAAACCGTCCAAAACTGAAT.............................................................................................................2112.00200002
........................................................................................................................TGAAACCGTCCAAAACTGAAA.............................................................................................................2112.00220000
droVir3
AA-----------TA---------------ATATTATTTCCTA--A-CTAG-ATAATGCCCACAATGGTTCTTAGTTTTAGACGTGTTTTGGTGTGCTTG-A-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCGATTGT-GAGGTAAAAGCGTCCA--------AA------TACTAAA-------------------ACAA------------------------------------AASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................221126083.0012608329943131488994538725474143122560333515024971133638137411885621314591780271391441570625435522725015183883291275151018294252566610276322877318789544595407221014281429745191957987580118043591951353471734193141585266
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21163068.00630687996421180116214929209111801540941553087623711894324601999510102516427728041428326328291641634814311717915462101255096170221245381328736817580297637523543549412981528796310566112131822128247542885748
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2013728.003728981087192214413060225211268497913065015410327147241142044025109102810000000000000000051165215700567755424441479325126264764
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................2313133.0031332211526357151708000006436223832190466458816911132010313410000000000000000022208315014302322937273510113515427286182
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................2312922.002922126425116230030227198240184422260536193252395501012616333152224100000000000000000001956013109792445546328161051393112103175255
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................1911794.00179412113801302010000000874479025131101001002000000000000000000000011009450004531123116102262152
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................2211671.001671103698261360120114312971381076272624312422012011559280010000000100000002003560523511623921026456130239142366
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAA..........................................................................................................2411619.001619005000400000552010000013321930230000280534229332500000000000000000002010010129999336121053052576777118166
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221931.009312356500005001246242220441211200001030113000000000000000000400435001717015210010041225349104140
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................231819.00819962967544201100006611423431230421120100002000000000000000000200750125618605536545621236168
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241631.006313325440000001000032223104701011000000000020001010000000000001201910105635433536122948163187
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................181395.0039529257200020000000200000000100100000000000100000000000000000030000000023242116109621210
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211304.00304269680000000000001001000200000000000010110000000000000000000006300002420252115123151238
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................191284.002842326001000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201214.0021401214410020000101200000000001000000003000000000000000000000000041000102463014042213
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................231201.002011610000000000000001101000010000000112210000000000000000000002100032182120602332282924
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................211187.00187221300000000001111010021200110000000101100000000000000000010018400018151610001051092127
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................241112.0011211170000100000000110000000000000120000000000000000000000000100200002685515251612071
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................231110.00110116300000000000131021103300101000010001000000000000000000000001000020000106410011
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTA..........................................................................................................241108.00108001000200000000000110030111300001015131000000000000000000000000025529023100213146
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................22193.0093125720000000000010011000001000000000000010000000000000000000101100001001000002163
........................................................................................................................TGAAACCGTCCAAAACTGAGGTA...........................................................................................................23174.007400003000000000000000000138310000020304331000000000000000000000000110369033210010
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................24173.0073200010200000013010040520102000001001200000000000000000000000100006411001100111252
........................................................................................................................TGAAACCGTCCAAAACTGAGGTAA..........................................................................................................24160.00600010000000000000000000023011000010330220000000000000000000000004221670101070244
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAC..........................................................................................................24160.006010000000000000000000000000000000000000100000000000000000000000000341322000194938
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................20157.005715200000000000000000000000000000000000000000000000000000000003000000100000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21148.004816011000000001020000101000100000000000000000000000000000000026200030200000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21147.0047212100010000010010020000000000001000010100000000000000000000011000013204001010001
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20145.004512150000000000010121001100000010000000000000000000000000000002000000100010330000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................24134.00340110000000001040100000001022000100020120000000000000000000001000000221300310011
........................................................................................................................TGAAACCGTCCAAAAC..................................................................................................................16132.003200000000000000000000000000000000000000000000000000011000030000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCC..........................................................................................................24130.003013100100000000000000000000000000200000000000000000000000000000000000033100600000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................25122.00222400000000000000001100000000000000000000000000000000000000001000000202503100000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................22122.002231130000000000000000000001000000000000000000000000000000000001000000200000010000
......................................................................CTTAGTTTTAGACGTGTTTTGG..............................................................................................................................................................22122.00220010100000000000010000140020000000000000000000000000000000016400100000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAA..............................................................................................................20121.002111300000000000000001000000000000000000000000000000000000000000000001100010201000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAAT.........................................................................................................25119.00190000000000000000000000000000000000100000000000000000000000000000031300000012143
........................................................................................................................TGAAACCGTCCAAAACTGAGGAAA..........................................................................................................24218.00360000000000000010000000021010000000111010000000000000000000000000063700000031025
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19117.001701160000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19116.00160290000000000100000000000000000000000000000000000000000000001000000000010011000
......................................................................CTTAGTTTTAGACGTGTTTTGGT.............................................................................................................................................................23116.00160022000000000000001000000101000000100000000000000000000000012500000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................23115.00150000001000000000000000110100000000110130000000000000000000000000100012001000000
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................19115.001511200000000000000000000000000000000000000000000000000000000002000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTC..........................................................................................................24114.00144210000000000000001000001100000000000000000000000000000000000000010000100020000
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................19113.00131611000000000000010001000000000000000000000000000000000000001000100000000000000
......................................................................CTTAGTTTTAGACGTGTTTTGGTC............................................................................................................................................................24110.00100000012000000000000000000000100010000010000000000000000000000000200000001100000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTTA..........................................................................................................24110.00100000000000200000000000000000000000010000000000000000000000000000001021000300000
........................................................................................................................TGAAACCGTCCAAAACTGAGTT............................................................................................................2219.0090000001000000000000001000010000000000000000000000000000000000000000204000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAAG.........................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000201000002012
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAAC.........................................................................................................2518.0080000000000000000000000000000000000010000000000000000000000000000001200003000001
........................................................................................................................TGAAACCGTCCAAAACTGC...............................................................................................................1918.0080800000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2318.0081200000000000010000000000010000000000000000000000000000001000000000000200000000
.............................................................................................GTGCTTG-A-AG--TTT-TGTTCCGAT..................................................................................................................................2217.0070000000000001010000000000011000000100100000000000000000000000100000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGT............................................................................................................2117.0070010000000000000000000000000000000000000000000000000000000000000000041000100000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2216.0060110000000000000000000000000000000000000000000000000000000000000000100100000101
........................................................................................................................TGAAACCGTCCAAAACTGAGGAT...........................................................................................................2316.0060100000000000000000000000000000000000000000000000000000000000000001300000010000
........................................................................................................................TGAAACCGTCCAAAACTGAAA.............................................................................................................2125.50112000000000000000000000001100000000000000000000000000000000001000000000100400100
........................................................................................................................TGAAACCGTCCAAAACTGACC.............................................................................................................2115.0051000000000000000000000000000000000000000000000000000000000003000000100000000000
......................................................................CTTAGTTTTAGACGTGTTTTGGTGT...........................................................................................................................................................2515.0050000100000010000000000000000000000010000000000000000000000000000000100000000001
.........................................................................................................................GAAACCGTCCAAAACTGAGGCC...........................................................................................................2215.0050300000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................1815.0050210000000000000000000000000000000000000000000000000000000000001000000000010000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTCC.........................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000030001010000
........................................................................................................................TGAAACCGTCCAAAACTGAGAA............................................................................................................2215.0050000000000000001000000000000000000000000000000000000000000000000000000000000013
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCG..........................................................................................................2415.0051100000000000000000000000000000000000000000000000000000000000000000010000100001
..........................................................................................................................AAACCGTCCAAAACTGAG..............................................................................................................1814.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGCT............................................................................................................2214.0040000000000000000000001000000000000000000000000000000000000003000000000000000000
......................................................................CTTAGTTTTAGACGTGTTTTG...............................................................................................................................................................2114.0040010000000000000000000000000000000000010000000000000000000002000000000000000000
droMoj3
GA----------AATCG-TTTTCT-----------------TC----CCAC-AAAATGCCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GAGGCGAAAGCATCCAGAA----GGAAAACAG-ACAAAAG------------------ACCA------------------------------------AASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22118576.0018576172525464196604682057
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21115976.00159761865237918015202283
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................201760.0076013101553511122
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231487.004871000110231343
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231296.0029652081144019
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221259.0025914057165023
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201135.00135121021002
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211129.00129116021001
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241122.001221103069012
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................19199.009980305605
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................22183.008370214915
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................23137.00371072801
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21127.00270071901
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................23127.00272081322
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21126.00264061402
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23122.00221051501
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21121.00210031701
......................................................................CTTAGTTTTAGACGTGTTTTGGT.............................................................................................................................................................23116.0016104407
......................................................................CTTAGTTTTAGACGTGTTTTGG..............................................................................................................................................................22112.0012301503
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20112.0012702210
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................24111.0011101702
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................22110.0010700210
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................1919.009502200
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2519.009102402
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................1918.008800000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................2217.007301300
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................2417.007003400
.......................................................................................................................TTGAAACCGTCCAAAACTGAGG.............................................................................................................2214.004301000
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................1814.004200200
.........................................................................................................................GAAACCGTCCAAAACTGAGGT............................................................................................................2114.004400000
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................1914.004002200
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................2413.003000300
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................1913.003100020
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2312.002000200
droGri2
A-------------------------------------------------------TACCCACAATGGATCTTAGTTTTAGACGTGTTTTGGTGTGCTTGGG-AG--TTT-TGTTCCGATTGAAACCGTCCAAAACTGAGGCCAATTGT-GTGGTAAAAGCATCCA------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................221506.00506281225
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................211261.00261135126
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................21128.0028280
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................23113.001394
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................20110.0010100
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2018.00871
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................2214.00431
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................2312.00220
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2211.00110
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................1911.00110
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2311.00110
.......................................................................TTAGTTTTAGACGTGTTTTGGT.............................................................................................................................................................2211.00110
........................................................................................................................TGAAACCGTCCAAAACTGAGGATG..........................................................................................................2411.00110
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................2111.00101
dp5
--------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACC----AAAAAAAAATATTAATAAT----------------------A-----------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22135574.0035574175354034519166967655883187433484
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21132520.0032520296290311717911727712683613386
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2011718.00171836351510048874007
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201534.0053404861320131100
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231482.004821010713000557002
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231428.0042821260151312375011
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211392.00392228626001112127
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................231252.0025211951950291002
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221235.0023512921410517202
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221129.001290251690312001
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................191119.001194530350251001
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241111.001119330430241100
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21194.0094001760143000
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19158.005805800000000
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20145.0045019014060006
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19136.003602802050001
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21135.003506022070000
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21130.003001021071000
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23126.002601256101001
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................24123.00230709070000
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................20119.001900019000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................24114.001401103000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................23112.00120206040000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................22111.001101001000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................22111.001101100000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCC...........................................................................................................2217.0070105010000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................2217.0070303010000
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................1916.0061005000000
.......................................................................................................................TTGAAACCGTCCAAAACTGAGG.............................................................................................................2216.0060600000000
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................1816.0060501000000
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................1815.0050101020001
.........................................................................................................................GAAACCGTCCAAAACTGAGGCTT..........................................................................................................2315.0050400010000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2314.0040101020000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCC..........................................................................................................2414.0040003010000
......................................................................CTTAGTTTTCGACGTGTTTTGGC.............................................................................................................................................................2313.0030003000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................2313.0030101010000
............................................................................................................................ACCGTCCAAAACTGAGGC............................................................................................................1813.0030201000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2513.0030102000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................2413.0030300000000
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................2213.0030002010000
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................1913.0030003000000
.........................................................................................................................GAAACCGTCCAAAACTGA...............................................................................................................1813.0030300000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAC..........................................................................................................2413.0030201000000
..........................................................................................................................AAACCGTCCAAAACTGAG..............................................................................................................1813.0030300000000
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................1912.0020002000000
......................................................................CTTAGTTTTCGACGTGTTTTGGTT............................................................................................................................................................2412.0020000110000
......................................................................CTTAGTTTTCGACGTGTTTTGGTGT...........................................................................................................................................................2512.0020000020000
droPer2
--------------------------------------------------------TGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTGATATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCATGAGCATCTAACC----AAAAAAAAATATTAATAATAATAAGAAAGAAACCAAAA-AAA-----------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22121405.0021405819450476611104083070
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21119541.00195412966512587390083954
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2011009.0010091441309514140
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231398.00398013013622326
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231261.00261101005715133
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221161.00161130389227
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................231101.00101740264618
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................22186.0086130353512
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................19168.0068144011381
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................21167.006744001094
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................20161.006104201063
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................24156.005621020267
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21140.004011010244
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21135.00350008216
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23126.00260109610
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21123.00230107123
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................24116.00160104101
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20112.0012020370
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................2418.008000170
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................1918.008040130
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................2316.006000060
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................2216.006220110
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................2316.006000420
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTG..........................................................................................................2415.005000140
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2514.004000040
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................1814.004000040
........................................................................................................................TGAAACCGTCCAAAACTGACC.............................................................................................................2114.004000040
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2213.003020010
..........................................................................................................................AAACCGTCCAAAACTGAG..............................................................................................................1813.003030000
droAna3
--------------------------------------------------------TGCCTACAATGGCCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21135131.00351311576263335855285324551
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22129697.00296971230960816643190518878
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2011437.00143713940441207646
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221634.006346313915570
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231483.004836657214724187
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231374.003745511011136161
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................211297.002970001631250
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221228.002289516933111
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................211226.00226110931184
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................191168.001681100492106
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201158.00158118005332
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211132.00132930014322
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241107.0010721020579
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23192.00921206578
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21191.009101028656
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23135.00351005128
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................20124.00240000222
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................22115.0015400128
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................23115.0015020526
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20114.0014810302
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19113.0013900004
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19111.0011400106
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................2419.009210321
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2318.008110015
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2517.007000214
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................2317.007000304
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................1816.006010500
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2215.005500000
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................2215.005100022
........................................................................................................................TGAAACCGTCCAAAACTGAGGCATT.........................................................................................................2514.004000103
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................1913.003300000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................2413.003000003
........................................................................................................................TGAAACCGTCCAAAACTGAGAA............................................................................................................2213.003000003
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................2213.003300000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTG..........................................................................................................2413.003000300
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................2013.003100200
........................................................................................................................TGAAACCGTCCAAAACTGAGGTA...........................................................................................................2313.003101001
........................................................................................................................TGAAACCGTCCAAAACTGAGAT............................................................................................................2213.003000021
.......................................................................................................................TTGAAACCGTCCAAAACTGAGG.............................................................................................................2213.003300000
........................................................................................................................TGAAACCGTCCAAAACTGGC..............................................................................................................2013.003000003
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2313.003300000
......................................................................CTTAGTTTTCGACGTGTTTTGGG.............................................................................................................................................................2312.002000002
droBip1
--------------------------------------------------------TGCCCACAATGGTCCTTAGTTTTCGACGTGTTTTGGTGTGCAGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
A-------------------------------------------------------TGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCGTCTACCAAACCAAGTAAAAAG-------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA------------ATGT-----------------------CA--AAGTAGAGTGTGGCCCGCAATGAACCTTAGTTTTAGACGTGTTTTGGTGTG-TGGGG-AG--CGA-TATTCCGATTGAAACCGTCCAAAACTGAGGCTAACTGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAGTGCCTTTCGATGTGAACATCGAAGAACAT-------CTTT--ATATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
AG----------ATCTGATCATCAAAGAAAAT-------CTTT--AAATAGAGTGTTGCCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCCAACC----AAAAAACGATACTAA--------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GA-----------TTTGATCATCCACGAAA-T-------CCCA--GCGTAGAATGATGTCCACAATGAACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTG-AATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GCGGCGTGAGCATCTAACC----AAAATGCGATACCAACG------------------------AGCGCGTCCTTTCCGTTCGTTTTATTTGCAGTCCACSizeHit CountTotal NormTotal
No Reads
droTak1
GA-----------TTCGATCATCCACGAAAAT-------CCTA--ATGTAGCGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTAACC----AAA-GGCGATACCAGCG------------------------A-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
--------------TTGTTCATCCAAGAATAC-------CCTG--ATGTGGAGTGTTGTCCACAATGGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-----------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-------------------CATCCAAGAATATAT-------TAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGCGAGCATCTATCC----AAAAAGCGATACCAA--------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................211182213.001822130000573000020001033128300020035444241190413801291000000020010000001000001000000000000000000000945001000115160357644013400561157900120641144013294144714661891951343769286268824123806102500000000005000110000300001000000200024763186018039517352196582600552713283435386220140038240100000202000000000000000000273311411205014500430100097023859561351151954538638940000228430000020081000000100010000003015364133391364716002423158174421652121139271252336040003144131130201010108143841190155213331181113980132100
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................221129008.0012900800006410001050019050465000300222337602197179198016100100801910012040002500000000000000000001001148000000514222111232294341751573482274800102613255113512113221921147623160114206263110788120740795000000000016010000040110040000100000302072256501896144239919956423743918753531824681404005149104100020100100040003000000314145411343607103361041600181713009812404363840825213255235954900000023082100002002723131017011002002112824588327220790773492344105014812383966120383948110115105463014230050915558940338969587461120135220
........................................................................................................................TGAAACCGTCCAAAACTGAGGCATC.........................................................................................................25153707.005370700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003599817709000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGATC..........................................................................................................24118047.00180470000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000132374810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................20112436.00124360000210000001080042000000101532161511220000000000000000000003100000000000000000000009200000000020003744001215110000101000021015315611064142411023638821050000000000000000000000000000000000002373770156011641683226630933382000000392000100000000000000000000000000300000000000021000001322070014656904000000980000000000000000001000100010676540815103301501902300102100116158000021000000010010534398123373943103000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................2313204.00320400001000000000200500000000000000000000000000000000000000000000000000000000000010430000000001601301800018310010002001012611518018441039543390000000000000000100000000000000000001241390126111109629928411867000002650000000000000000000000000000001100000010000713900000553200031310900000280000000000000000000000000000189217170197004119000000880415900000000000000004188143873002000
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................2111940.00194000000000000000000000000000020144441100000000000000000000000000000000000000000000000000000000000000000009000000000000035177030057562263379304300000000000000000000000000000000000013114408602935414809812579000002290000000000000000000000000000010000010010000000000002000013000000050000000000000000000000000000357801220000005013000000000000000011000100000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................2311772.001772000010000000003001000000000000000000000000000000000000000000000000000000000000002000000000010070500004800000000000001495030151170181242800000000000000000000000000000000000065750370046390771580104100000152000000000000000000000000000000020100000000095000008530001113503000001600000000100000000000000000008169789601119030100470202900000000000000001326252545001000
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................2211754.00175400002000000000100000000000000000000000000010000000000000000000000000000000000000000000000000002110000100000000000000014190200251986214081900000000000000000000000000000000000017290110120450260350491300000830000000000000000000000000000000000000000000282860010024400007470300001260000000000000000000000000000948610713300320100001408120000000000000000319832924001000
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................2011545.00154500000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000600000010000005475903204828772375463400000000000000000000000000000000000012216008301676726111280194900000137000000000000000000000000000000010000000000020000000300001300000001000000000000000000000000000061510900200100003023000000000000000012110000000000
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................1911242.001242000000000000000001000000000051162201000000000000000000000041000000000000000000000000000000000000400000050000000000000015204032306115180000000000000000000000000000000000003254091011261166481401200000290000000000000000000000000000000010000000000100000022200001830300000400000000000000000000000000006141811340011020000100330000000000000000336540010000000
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................2311161.0011610000000000000001200000000001000000000000010000000000000000000000000000000000000000000000012100400000090000000000000107020408020010000000000000000000000000000000000001719014431123609152218000002000000000000000000000000000000021100001000000002000100001010020000111000000000000000000000000020076896293033211100010012014330000021440000100134081341069203000
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221934.009340000100000000011000000000100000000000000000000000000000000000000000000000000000020000000000300102000017000000000000011350905614052123000000000000000000000000000000000000191701900181312301602520000031000000000000000000000000000010030110000000058110000001910009350700000110000000010000000000000000000434145540213304000014015200000000100010100720260913003000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAT...........................................................................................................231692.006920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000100000000000000000000000000000000000001100000200020200000010000000000000000000000000000000000000000000513164000000000000000000000000000000000000000000000000000100000000000000000000000000000000200000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................211500.00500000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001010206011120000000000000000000000000000000000001360200410100010000001200000000000000000000000000000000000000000000000000021000324030000010000000000000000000000000000745236107005700000016099000000000000000056341011000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCATC.........................................................................................................241456.004560000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000337119000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................211422.0042200004100000000000000000000000000000000000000000000000000000000000000000000000000200000000004000010000000000000000000810401317021200000000000000000000000000000000000008806004717060800000014000000000000000000000000000000000000000000012000001100000319040000030000000000000000000000000000222836170021020000100690000000000000000011940111000000
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................211283.0028300001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000430202010202600000000000000000000000000000000000091507004201010000000012000000000000000000000000000000000000000000000000000100002200000001000000000000000000000000000028243043004202000021068000000000000000012810120100000
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................191226.002260000000000000000000000000000001060000000000000000000000000000000000000000000000001000000000000000000001000000000000007404172503266000000000000000000000000000000000000122706007701201604620000021000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000000000000000000000000000300000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................241206.0020600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000200000000000000100000000004100000000000000000000000000000000000057030021050505000000900000000000000000000000000000000000000000008539000000200003000000000000000000000000000000000000072520000000000100000000000000000000900000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................231202.0020200000000000000300000000000000000000000000010000000000000102000000000000000000000100000000000004020000110000000000000043010208130320000000000000000000000000000000000002707005405010420000012000000000000000000000000000000110000210000001000101500003000000003000000001000000000000000000011208700310000006052000000000000000001400201001000
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................221169.001690000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000002000000000000000030000000000100000000000000000000000000000000000002101100120236016000002000000000000000000000000000000010000002000000000000000000300000000000000000000000000000000000013781100310000001010000000010000000056141001000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................241166.001660000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000070000000000000030010003140000000000000000000000000000000000000007102005503050400000060000000000000000000000000000000001000010000000000004000001000000000000000000000000000000000000012541300000000000013000000000000000025100010000000
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................191123.001230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000021000103000000000000000000000000000000000000000006501005708021600000020000000000000000000000000000000000000000000000000001000001010000010000000000000000000000000000125141500100000000000000000000000000002100000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................221118.0011800000000000000000000000000000000000000000000000000000000000000000000000000000000400000000007000000000200000000000000140301410010110000000000000000000000000000000000001102001101080710000070000000000000000000000000000000000000000000000000022000014010000040000000000000000000000000000712710000000000300300000000000000000200000000000
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................181111.001110000000000000000000000000000233200000000000000000000000010000000000000000000000000000000000000001000000000000000000030010001039210000000000000000000000000000000000000703001233260140000010000000000000000000000000000000000000000000100000012000000000000000000000000000000000000000000695150000020000200000000000000000000300000000000
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20194.009400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230202181000000000000000000000000000000000000000029040016030401000000010000000000000000000000000000000010000000000000000000200000000000001000000000000000000000000000045620010000000100000000000000000000300000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23182.008200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000100000000000000200000000001000000000000000000000000000000000000032010031020003000000600000000000000000000000000000000000000000001000000030000020000000000000000000000000000000000009101500000000005001000000000000000021410101000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGATT..........................................................................................................24178.007800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006215000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTC..........................................................................................................24168.006800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004025000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..........................................................................................................................AAACCGTCCAAAACTGAGGCATC.........................................................................................................23261.0012200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................22152.0052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000004100000003000000000000000000000000000000000000000350300530204090000008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................20149.00490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010010264000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000051130000000000000000000000000000000400000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGATC..........................................................................................................23248.009600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................23145.00450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000200000000000000000000000000000000000000000001400000101010300000050000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000235100000000000002000000000000000001100000000000
........................................................................................................................TGAAACCGTCCAAAACTGATT.............................................................................................................21143.00430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100011020000000000000000000000000000000000002101000000000000000000000000000000000000000000000000000000000000000000000100014000000000000000000000000000000000000106090001000000100000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCTC.........................................................................................................25141.004100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002714000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................23133.0033000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000100100320202031000000000000000000000000000000000000000000000000001000000100001100000000000000000000000000000000000010220000000000000100000000000000000500000000000
droSim2
A------------TCTGTTCATCCAAGAATGCAT-------TGT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAAAAGCGATACCAA--------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................221176950.00176950170635340020931697190712198110012001026
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21130364.00303642864991210725573656834111900000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................23110399.00103991008426833120000010001000
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................1916248.00624853101351511577110000000000
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2016132.0061324485120162129145620120000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................2312383.00238317804471854300000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................2411433.001433136163810000000000000
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................1811407.00140710513040232000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231672.0067263220390000220103000
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211495.0049547167100100000000000
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................192380.0076073521400000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................231268.0026825313110000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221266.002662575220000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................221223.0022320311900000000000000
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................201159.001591484610000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221113.001131082100000010100000
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................20296.501931876000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................20189.00896210250100000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21166.0066591240000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21160.0060582000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................24159.0059572000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................23159.0059572000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21139.0039381000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAA..............................................................................................................20138.0038371000000000000000
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................19137.0037360100000000000000
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19126.0026211130000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................24123.0023221000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19123.0023800101400000000000
.........................................................................................................................GAAACCGTCCAAAACTGA...............................................................................................................18120.0020800001200000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCC...........................................................................................................22115.0015400001100000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................24114.0014300001100000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTC..........................................................................................................24113.0013120100000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................22112.0012120000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAC..........................................................................................................2419.00990000000000000000
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2319.00990000000000000000
............................................................................................................................ACCGTCCAAAACTGAGGC............................................................................................................1819.00990000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................1938.0024240000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTG..........................................................................................................2417.00770000000000000000
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................1816.00660000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCC..........................................................................................................2416.00660000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................2016.00660000000000000000
........................................................................................................................TGAAACCGTCCAAAACTA................................................................................................................1826.0012111000000000000000
..........................................................................................................................AAACCGTCCAAAACTGAGGCT...........................................................................................................2115.00550000000000000000
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................2314.00410000000000300000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................2314.00440000000000000000
...........................................................................................................................AACCGTCCAAAACTGAGGCT...........................................................................................................2013.00320000000100000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2213.00310020000000000000
.............................................................................................................................CCGTCCAAAACTGAGGCT...........................................................................................................1813.00330000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAT...........................................................................................................2313.00330000000000000000
..........................................................................................................................AAACCGTCCAAAACTGAG..............................................................................................................1813.00320010000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2513.00330000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGAG............................................................................................................2212.00220000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGT............................................................................................................2112.00220000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGAA............................................................................................................2212.00220000000000000000
......................................................................CTTAGTTTTCGACGTGTTT.................................................................................................................................................................1912.00220000000000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCTT..........................................................................................................2312.00220000000000000000
........................................................................................................................TGAAACCGTCCAAAACTGAAA.............................................................................................................2171.29990000000000000000
............................................................................................................................ACCGTCCAAAACTGAGGCT...........................................................................................................1911.00110000000000000000
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................2211.00100010000000000000
droSec2
A------------TCTGTTCATCCAAGAATGCAT-------TGT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAAAAGAGATACCAA--------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21133768.0033768107433109429290
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22128451.0028451752249679924404
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2011556.00155610120121252
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221388.003886222358
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................231355.0035525410289
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231281.0028118230240
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................191160.00160620152
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221105.00105116088
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201103.00103685030
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21187.008734080
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................21165.006555118
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23157.00571111827
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................24152.005254043
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................23144.004431139
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21139.0039123024
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21133.003316026
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19128.002881019
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................22123.002316214
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20118.001830015
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................18115.001510014
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................23112.001200012
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23110.00100109
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................1917.0076001
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................2216.0064101
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................2215.0054001
.......................................................................TTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................2214.0040004
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................2414.0040004
........................................................................................................................TGAAACCGTCCAAAACTGAA..............................................................................................................2013.0030102
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................2413.0030003
........................................................................................................................TGAAACCGTCCAAAACTGAGCA............................................................................................................2212.0021001
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2312.0020200
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2312.0022000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................2212.0020002
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2512.0020101
......................................................................CTTAGTTTTCGACGTGTTTTG...............................................................................................................................................................2112.0021100
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................1911.0011000
........................................................................................................................TGAAACCGTCCAAAACTGAGGGT...........................................................................................................2311.0010001
............................................................................................................................ACCGTCCAAAACTGAGGC............................................................................................................1811.0011000
droYak3
G------------TCTGTTCATCCAAGAATATAT-------CAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTA-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCAACTATCC----AAACA------------------------------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22249250.509850181795962993413337104619062040
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21211481.5022963984310122522611833611340000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................2322394.0047884466323058217120000
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................202938.50187711845800124451600000
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................192593.0011861124900163700000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................232492.00984947220112110000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................232304.00608233220078260150000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................242268.0053650820062000000
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................182192.003843831000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................212137.0027418976105300000
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................19294.001881880000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................22268.5013757310175450000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23267.001341200105800000
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................22263.501271193003200000
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................22263.0012645650155410000
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20245.0090808001100000
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................20242.50851266001510000
........................................................................................................................TGAAACCGTCCAAAACTGAC..............................................................................................................20225.5051500001000000
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................21222.0044400033700000
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21218.00361300012200000
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21218.0036920051910000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................24214.0028250000300000
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................23213.002642327710000
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................19211.0022220000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTC..........................................................................................................2429.5019171001000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2328.0016140000200000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................2426.001242001320000
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................1925.501135000300000
........................................................................................................................TGAAACCGTCCAAAACTGAA..............................................................................................................2025.5011110000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................2224.50981000000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTTT.........................................................................................................2524.00850001200000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAC..........................................................................................................2423.50760001000000
.......................................................................................................................TTGAAACCGTCCAAAACTGAGGC............................................................................................................2323.50760001000000
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTG..........................................................................................................2423.00650001000000
........................................................................................................................TGAAACCGTCCAAAACTGC...............................................................................................................1922.50550000000000
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................2222.50510000310000
........................................................................................................................TGAAACCGTCCAAAACTGATT.............................................................................................................2122.50500000500000
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................1922.50523000000000
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................1822.50540001000000
..........................................................................................................................AAACCGTCCAAAACTGAGGCT...........................................................................................................2122.50550000000000
.........................................................................................................................GAAACCGTCCAAAACTGAGGCC...........................................................................................................2222.50550000000000
........................................................................................................................TGAAACCGTCCAAAACTGT...............................................................................................................1922.50550000000000
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................2022.00400001300000
........................................................................................................................TGAAACCGTCCAAAACTGAGGTA...........................................................................................................2322.00400001210000
droEre2
GA-----------ACTGTTCATCTAAGAATGTAC-------CAT-ATCCGTAGTGTTGTCCACAATAGACCTTAGTTTTCGACGTGTTTTGGTGTGCTGGGG-AG--TTC-TATTCCGATTGAAACCGTCCAAAACTGAGGCCAACTGT-GAGGCGTGAGCATCTATCC----AAACA------------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
........................................................................................................................TGAAACCGTCCAAAACTGAGGC............................................................................................................22161985.006198521163416010973947494740
........................................................................................................................TGAAACCGTCCAAAACTGAGG.............................................................................................................21159281.0059281229413544374009475150
........................................................................................................................TGAAACCGTCCAAAACTGAG..............................................................................................................2012015.0020151470188015815220
........................................................................................................................TGAAACCGTCCAAAACTGAGGCA...........................................................................................................2311063.0010639211700757250
........................................................................................................................TGAAACCGTCCAAAACTGAGGA............................................................................................................221651.0065160390135930
........................................................................................................................TGAAACCGTCCAAAACTGAGGCT...........................................................................................................231408.00408460440342840
.........................................................................................................................GAAACCGTCCAAAACTGAGGC............................................................................................................211282.0028215428041140
.........................................................................................................................GAAACCGTCCAAAACTGAGG.............................................................................................................201255.002551610705820
........................................................................................................................TGAAACCGTCCAAAACTGAGT.............................................................................................................211217.0021719012031830
......................................................................CTTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................231195.0019513103131650
........................................................................................................................TGAAACCGTCCAAAACTGA...............................................................................................................191140.00140608031230
........................................................................................................................TGAAACCGTCCAAAACTGAGGCC...........................................................................................................231136.001364413081070
........................................................................................................................TGAAACCGTCCAAAACTGAGGT............................................................................................................221115.00115602402830
........................................................................................................................TGAAACCGTCCAAAACTGAGA.............................................................................................................21173.0073501003550
........................................................................................................................TGAAACCGTCCAAAACTGAGC.............................................................................................................21158.005840604440
........................................................................................................................TGAAACCGTCCAAAACTGAGGCG...........................................................................................................23155.005520506420
......................................................................CTTAGTTTTCGACGTGTTTTGG..............................................................................................................................................................22146.0046501013270
..........................................................................................................................AAACCGTCCAAAACTGAGG.............................................................................................................19137.0037110202220
..........................................................................................................................AAACCGTCCAAAACTGAGGC............................................................................................................20130.0030110400150
........................................................................................................................TGAAACCGTCCAAAACTGAGGCTT..........................................................................................................24125.002510001230
........................................................................................................................TGAAACCGTCCAAAACTGAGGG............................................................................................................22115.001520201100
.........................................................................................................................GAAACCGTCCAAAACTGAG..............................................................................................................19114.00149010130
...........................................................................................................................AACCGTCCAAAACTGAGG.............................................................................................................18112.001210000110
........................................................................................................................TGAAACCGTCCAAAACTGAGGCAT..........................................................................................................24111.00110030170
.........................................................................................................................GAAACCGTCCAAAACTGAGGCA...........................................................................................................22110.00105000050
........................................................................................................................TGAAACCGTCCAAAACTGAT..............................................................................................................2019.0091000080
...........................................................................................................................AACCGTCCAAAACTGAGGC............................................................................................................1918.0082000060
........................................................................................................................TGAAACCGTCCAAAACTGAGGAA...........................................................................................................2317.0070030040
........................................................................................................................TGAAACCGTCCAAAACTGAGGTT...........................................................................................................2316.0060020040
.........................................................................................................................GAAACCGTCCAAAACTGAGGCT...........................................................................................................2215.0054000010
............................................................................................................................ACCGTCCAAAACTGAGGC............................................................................................................1815.0051000040
........................................................................................................................TGAAACCGTCCAAAACTGATT.............................................................................................................2115.0050030020
......................................................................CTTAGTTTTCGACGTGTTTTGGTA............................................................................................................................................................2414.0040010030
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCT..........................................................................................................2414.0040000130
........................................................................................................................TGAAACCGTCCAAAACTG................................................................................................................1814.0041000030
......................................................................CTTAGTTTTCGACGTGTTTTGGC.............................................................................................................................................................2313.0030000030
........................................................................................................................TGAAACCGTCCAAAACTGAGTA............................................................................................................2213.0030000030
........................................................................................................................TGAAACCGTCCAAAACTGAGGCCA..........................................................................................................2413.0030000030
......................................................................CTTAGTTTTCGACGTGTTTTG...............................................................................................................................................................2113.0031020000
.......................................................................TTAGTTTTCGACGTGTTTTGGT.............................................................................................................................................................2213.0030000030
........................................................................................................................TGAAACCGTCCAAAACTGG...............................................................................................................1913.0030000030
........................................................................................................................TGAAACCGTCCAAAACTGGC..............................................................................................................2042.2590000090

Generated: 10/20/2015 at 07:30 PM