ID:

dwi_497

 Coordinate:

scf2_1100000004511:1918660-1918810 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.2 -36.0

Flybase annnotation

exon [dwil_GLEANR_17489:1]; CDS [Dwil\GK17167-cds]; intron [Dwil\GK17167-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
mature
  1. scf2_1100000004401:625432-625454 +
  2. scf2_1100000004511:115315-115337 +
  3. dwi_497  scf2_1100000004511:1918768-1918790 +
  4. scf2_1100000004511:3345413-3345435 +
  5. scf2_1100000004513:1736361-1736383 +
  6. scf2_1100000004515:3179798-3179820 +
  7. scf2_1100000004515:4361364-4361386 +
  8. scf2_1100000004521:874774-874796 +
  9. scf2_1100000004540:189213-189235 +
  10. scf2_1100000004540:1709581-1709603 +
  11. scf2_1100000004558:2154922-2154944 +
  12. scf2_1100000004558:2481739-2481761 +
  13. scf2_1100000004585:3803656-3803678 +
  14. scf2_1100000004762:5782004-5782026 +
  15. scf2_1100000004768:1665748-1665770 +
  16. scf2_1100000004943:9803663-9803685 +
  17. scf2_1100000004902:2855986-2856008 +
  18. scf2_1100000004902:10022459-10022481 +
  19. scf2_1100000004909:8783610-8783632 +
  20. scf2_1100000004963:4278980-4279002 +
  21. scf2_1100000004511:5767340-5767362 +
  22. scf2_1100000004521:5541800-5541822 +
  23. scf2_1100000004822:1876805-1876827 +
  24. scf2_1100000004870:16733-16755 +
  25. scf2_1100000004909:11934706-11934728 +
  26. scf2_1100000004921:791571-791593 +
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGAGCCAGCCGGATGGCTGGCAAATGGACGGAGTAGCAGCATCAAAGCAGTTAGAGTCACAGACTCGTAGAGTAGCAGAGTACTTGCAAAAATATTATTATGATTGCCACAGCAGCAGCGGCAGCAACTGCAGCTCAGCGAAAAGTAGCCCAGGCAACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAATTCTGGGTGGCTAGAAAAGACGACGATGATGACGACGACGACGACCCAGAC
**************************************************....(((((...)))))...(((((......)))))((((..(((....)))..))))....((.((.((.((.((..((((.(((..((.....((.((....)).))....))))).))))..)).)).)).)).))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V119
head
 V117
male body
.................................................................................................................................TGAAGCTCAGAGAAAAGT........................................................................................................ 18 2 18 0.44 8 7 1 0 0
.................................................................................................................................CGCAGCTCAGCGAAAAGTG....................................................................................................... 19 2 3 0.33 1 1 0 0 0
.........................................................TCACAGCCTCCTTGAGTAGC.............................................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0
........................................................................................................................................................................................................................AAGACGAAGATGATGACTAC............... 20 2 17 0.18 3 1 2 0 0
......................................................................................................................................................................................................................AAACGACGACGAGGATGACGACGAGGA.......... 27 3 20 0.10 2 0 0 0 2
..............................................................................................................................................................CACCAGCAGCAGCAGCAGCAGCA...................................................................... 23 0 20 0.10 2 1 1 0 0
..........................................................................................................................................................................................................................GACGACGATGATGACGACG.............. 19 0 13 0.08 1 1 0 0 0
................................................................................................TCTTGTGATTGGCACAGCAGC...................................................................................................................................... 21 3 14 0.07 1 0 1 0 0
......................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCACC........................................................... 26 0 15 0.07 1 1 0 0 0
..............................................................................................................................................................................................................................ACGATGATGACGACGACGAC......... 20 0 20 0.05 1 0 1 0 0
................................................................................................................................................................................................................................GATGATGACGACGACGACGA....... 20 0 20 0.05 1 0 0 0 1
...............................................................................................................................................................................GCAGCAGCAGCAGCACCAGCA....................................................... 21 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................CAACACCAGCGGCAGCCGCAGCAGC....................................................................... 25 2 20 0.05 1 1 0 0 0
............................................................................................................................................................AACACCAGCAGCAGCAGCA............................................................................ 19 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTCTCGGTCGGCCTACCGACCGTTTACCTGCCTCATCGTCGTAGTTTCGTCAATCTCAGTGTCTGAGCATCTCATCGTCTCATGAACGTTTTTATAATAATACTAACGGTGTCGTCGTCGCCGTCGTTGACGTCGAGTCGCTTTTCATCGGGTCCGTTGTGGTCGTCGTCGTCGTCGTCGTCGTCGTCGTGGTCGTGGTTAAGACCCACCGATCTTTTCTGCTGCTACTACTGCTGCTGCTGCTGGGTCTG
**************************************************....(((((...)))))...(((((......)))))((((..(((....)))..))))....((.((.((.((.((..((((.(((..((.....((.((....)).))....))))).))))..)).)).)).)).))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
.........................ACCAGCCTCATCGTCCTA................................................................................................................................................................................................................ 18 2 1 1.00 1 1 0 0 0
....CGGTCGGCCTGCCGACGGTTTT................................................................................................................................................................................................................................. 22 3 2 0.50 1 1 0 0 0
...............................................................................................................................TGACGTCGAGTCGCTCTCCTT....................................................................................................... 21 3 10 0.10 1 0 1 0 0
.............................GCCTCACCGTCGTACTTGC........................................................................................................................................................................................................... 19 3 13 0.08 1 1 0 0 0
....................................................................................................................................................CGGGTCAATTGGGGTCGTC.................................................................................... 19 3 14 0.07 1 0 0 1 0
.....................................................................................................................................................................................CCTGGTCGTGGGCGTGGTTA.................................................. 20 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:1918610-1918860 + dwi_497 CAGAGCCAGCCGGA-TGG----CTGGCAAATGGACGGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCA--A---------------------AG--------------------------------------CAGTTAGAGTCACAGACTCGTAG----------------------------------------------------------------------------------------------AGTAGCA----GAGTACTT------------GCAAAAAT-----ATTATTAT-GATTGCCACAG------------CA---GCAGCGGCAGCAACTGCAGCTCA----------------------------------------GCGAAA--------------------------------AGTAGC------------------------------------------------------CCAGG------CAACA------------------------CCA-------------GCAGCA---GCA-GCAGCAGCAGCAGCAGCACCA-------------GCACCAA--------------------------------------------------------------------------TTCTG---------------GGTG-G-------CTAGAAAAGAC---------GACGA--TG----------------ATGA--------CGA---CGACGACGAC-CCAGAC
droVir3 scaffold_13052:1898031-1898266 - CAGCAGCAGCCGCA-GCA----GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGCAGCAGCAGCAGCA--GC------------------------AGTAGTAATTAGCTG------------------CAGC--------------------------------AGCA---------------------------------ACAGCC---------------------------------------------------------GCAGCAGCAGCAGC--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAGC----AGCAACAGC------AGCAGCAAA--------TGCAGCAACATCAAAATCAGC------------------------------------------------------TGCCG------TAAC------------AGC------------C-------------GCAGCA---GCA-GCAGCAGCAGC---AGCAGCA-------------GCAGCAG---C-----------------------------------------------AGCAGCCACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAAC
droMoj3 scaffold_6498:159923-160167 + CTGAACAAGGCCGCAAA---TGCTAGCAA---------A----CAGC------------------------------------A----------------------------------------------------ACAACAG---C---------T------------GCATATACT-----------------------------------ACAG----------------------------------CAGCAGCAGC-----------------------------AGCAGCA------------------------------------------------------------------------------------------------GCAACTACT-----ACAGCAGCAGCA---GCAGCAGCAGCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CAGCAGCAGCAGCAGC------AGCAGCAGCAGC------------AGCAGCAGC----AGCAGCA---GCAG-CA-------------------------------G------------CAGCAGCAGCA-----------------------GCAGCAGCAGCAGCAGCC------------------AATC---------------AA------------------------------GACAA--AG----------------AAGA--------GGG---CGAAGAAGAA-GACTAC
droGri2 scaffold_9241:1737-1960 - CAGCGGCAGCAGCA-GCA----GC-----------------------------------------------------------G-----------------------------------GCA-----------------------------------------------------GCAGCAGCAGCAGCAGCGGCA--GC------------------------AGC-------------------------AGCAGCAGCAGCGGC-----------------------AGCA------------------------------------GTAGCAGCA------------------------------------------------------GCAGCGGCA-----GCAGCAGCAGCA---GCAGCGGC------AGCGGC-----------------AGC------AGCAG---------------------------C---------------------------------AGCGGC----AGCAGCAGC------AGCA-----GCAGCA---------------------------------------------------------------------------------------------------------GC------------AGCAGCAGC-----------------------------------GGCA-------------GCAGCAG---C---------AGCG-----------------------G---------------------------------CAA---------------CGGCAGCAGCAGCAGCG-------G-----CAGTG---------GC-----------AGC--GG--------CAG---CATCAGCA---TCAGAA
dp5 4_group1:2702247-2702515 - CAGCGCCTGAAGAA-ACA----GC--------------------------------------------------------AGC----------------------------------------------------------------------------------------------------GACAGTA--------------------------GCAGCAGCAGCGAGAAGAAGCAGTGACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCAAAAACAGC---------------GAGAGGAGCAGCAGCGCCAGCAACAAAAGCAGAAGCAGCGCC-----------------------------AGCAGC-----------------------------------------AGCAGAG---------AC---------------------------------AGCAGA----AGCGACAGC------AGCA-----GCGAGAGG---------------------------------------------------------------------AGCAGCAGCAG------CAGCGTCAGCAGCAGCAGC-------------------------------------G-TCAGCAGCAGC------AGCG-------------TCAGCAG------------CAGCA-----------------------GCGTCAGC---AGCAGCAG------------------A-------------------------------------------------GACCA--AG----------------ACGA--------CGA---CGACGACGAC-ACTGCC
droPer2 scaffold_5:2506581-2506807 + AAGATGCAGCAGCG-ACT----GA-----------------------------------------------------------A-----------------------------------AAA-----------------------------------------------------ACAGCAGCGACAGCAGCAGCA--GC------------------------AGCGAGAAGAAGCAGCGACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCAGAAACAAC-----------------------------------------------------------GAGAGG---------AGCAGCAGCGCCAGCAGC-----------------------------------------AGCAGCG---------AC---------------------------------AGCAGA----AGCGACAGT------GGCA-----GCGAGA---------------------------------------------------------------------------------------------------------------------GGA-----------------------------------GCAGCAGCGACA-------------GCAGCAG--------------------------------------------------------------------------CAGAGA---------CCAAGACGACGGCGACGACG-------G-----CGACG---------AC-----------G--GCGA--------CGA---CGACGACGAC-ACTGCC
droAna3 scaffold_13334:1019196-1019467 - CAGTGCCCGGCCAG-C----AGGTGGC-------CGGTGTG--CCGCCACAGATGGGGATGCAGCACGGGCCGGGGGATCC-------------------------------------------------------------------------------------------------GCAAGGACCA--CCCGTTCAGATGCCACCCTACGGCCAG----------------------------------CAGCAGCAGC-----------------------------AACAGCCGCAGCCACATCCCGGCCTGCCGCCAGGCGCTC-----------------------------------------------------------------------------------------------AACAGCAATCTCAGCAAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GGC--------------------------ACAACAACAACAGCAGCAGCAGCAACAACAGGCGG------------CAGCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------GC-----------AGC----------------------AG------CAGCC
droBip1 scf7180000396409:10165-10412 - CCA-----GCAGAT-GGA----TC--------------------------------------------------------CGCAACT-----------------------------GGATCC-----------------------------------------------GTACCAGCT------------CCATCA-----------------CCAG----------------------------------CAGCAGCTGG-----------------------------AGCAAAT------------------------------------------------------------------------------------------------GCAGCAGAC-----GCAGCAGCAGCTGGAGCACCAGCAGCA-----------------------ACTGG------AGCAG------------CA---GCA------A---------------------------------------C----------------------T-----GG---------------------------------------------------------------------------AGCATCAGCAG------CATCTCGAGCAGCAGCATC------------ACCAGCAGC----AGCAGCA---ACTG-GA-------------------------------G------------CAGCAGCAGCA-----------------------GCAACAACAACAACAT------------------CAGATC---------------CTGGC-------CCAGC-----------------------------------------CGCCGGCGAAGAAGCGACGAGGAGGCG-CCACAC
droKik1 scf7180000302684:46489-46672 - CAGAGCGGAACGGAGGGC----GT-------------GGC----------------------------------------AGCTGTA-----------------------------GGAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGGCATCATCATTAAATATCATT-----------------------------AACACAGC------------------------------------------------------AAC---------------------------------------------------------------------------------------------------GAACAAGCGGCAGCAGCACCGA---CAAC-T--GA----CAGCGC--------------------------------AGCAAC------------ATCAGCAACAGCAGCAGC---------AACAG------------------------------CAGCAGCAAC---------ATCA--------------------------------GCAGCAGCAGCAGTA-------------GC--------------------------------------------------------------------------------------------------------------------------------AGCA---------AC-----------AAA-----------------------------AGCAGC
droFic1 scf7180000453955:566383-566613 - CAGAAGCAGCCGGA-TTA----TA-----------------------------------------------------------A-----------AA----------------------AGT-----------------------------------------------------CCA------------CC------------A--------TTA------------------------------AGCAGCAGCAGCAGC-----------------------------AACAGCTACAGA-------------------AGAAGCTCAAAAGTGACGGCGGTGGCAACTACAATAT---------------------------------AATC----------------------------------------------------A-----AGCAACACA------AACA---CGAGCAGCAGCAG---------C------------------------------AGGAACAG---CAACA---------------------------------------------------------------------------------AC---------AACAGCAAC---------------------------------T----------------------------------GCAGCA-GCA---GCAGCAGCAGCAGCA-------------ACAGCAA--------------------------------------------------------------------------CAGAGTGTGGCAGCTT-----------TGGC------------------TGTT---------AA-----------TC--AGA--------CGG---CGAAGG------CGACG
droEle1 scf7180000490546:1184994-1185238 + AAA-GCCGGGAAAA-T----TGCTGGC-------CAGTG----CAGCAGCAACAGCCAAAACAGTGTCGAAAAACCGGTTA--------------------------------------------------------------------GC-----------------------------AAGGGTTG--CTTATAAATGTACCA------GGACAG----------------------------------TGGCTGCAGC-----------------------------AGCAGTA------------------------------------------------------------------------------------------------GCAGTCGAC-----GCGGCAGCAGCA-GTGCAGCAGCAGCA-----------------------ACATC------AACAG------------CA---GCA------A---------------------------------------C-------------------TGCA-----GCAG-------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAGCAGCAACAGCAGAAGCA-------------GCAGCAACTGAAGTG-----------------------------------------------GCAGCAACATCTACGACAG------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAAC
droRho1 scf7180000779273:41196-41445 - CAGCAGCAGCAGCA-CTT----TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----CTGCCTGCAGCAGCGCTACGACAA--CAACTACAGCGTCAGCGTTGACTACCAGTAGAGGCCC--------------------------------------------------------------------------------------------------A------------GTGAAAAATGTGACCCATAAC-ACTAGCGACAGTAGCAGCAACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAGTAG------CAACACCAACAACAGCAGCCCCAGCAACATCA-----------------------------------GCAGCAGCAACA-------------GCAGCAG---------------CCAGACAAGCGAGATGACTACGCGGGCAACAGC---AGCAACAA------------------A-------------------------------------------------CACGA--ACAC-----------GAC----------------------GG------CAACC
droBia1 scf7180000302075:431973-432259 + CAGGAGCAGCAGGA-GCC----AG-------------GGCA----------------------------------------GCTGGACCAAAGCAACAGACGACCGCAACAAGTGGGGGACAGCTGCCAGGTGACAGCAACAATATTGTGAAGTATCCCTAAAGCGCTCAA------------AGCAACAGTGACA--------------------G----------------------------CAG---CAACAACAGCAGCAAC-----------------------AGCA---------------------------------------------------------------------------------------------------------ATA-----GCAGCAGCATCA------------------GCAGC-----------------------------------------AGCAGCA---------AC---------------------------------AACAAC----AGCAACAGC------AATA-----GTAA---------------------------------------------------------------------------TAGCAGCAGCAGCAGC------AGCAGCAGCAAC------------AGCAGCAGC----AGCAGCA---ACAG-CA-------------------------------G------------CAACAACAGCA-----------------------ACAGCAGC---------------------------------------------------------------------------------------------------------------------------AGCAACAGC-ACACAT
droTak1 scf7180000415184:12956-13183 + CGAAGAAGAGCCA-----------------------GAAGAACCTGC------TGCC------------------------GGG-----------------------------------ATA-----------------------------------------------------CCAGC---GACTGGA--------------------------GCAGCAGCAGCG--GAGCAGCAAGGACTA-----------------------------------------------CA------------------------------------AGAACTATGGCAATCTCATCTACGCCAA------------------------------------------------------------------------------------------------------------------G---------------------------C------------TGAGTGAGCAGCTGCAGCAGAAG---GATC------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCAGCGGCG-------CCAGCG-GCACAAACAGCAGCAGCAGCA-------------GCAGCAA---C---------ATCA-----------------------GCTGTTGC-------------------------------------AGGAT-----------CAGC------------------ACAA---------GG-----------AC--AAG--------GAG---CCACGACCAC-C---CA
droEug1 scf7180000409110:1021960-1022160 - AGCAGC-AGCAGC----------------------------------------AGCA------------------------GTA-----------------------------------ACA-----------------------------------------------------GCAAC---AACACT--------------------------AG----------------------------------CAGCAGCAAC-----------------------------AACAATA------------------------------------------------------------------------------------------------GTAACA-------------------------------------------------------------AC------AACAG------------CA---GCAGCAGCAACAACAACAACACA----------------------------------------CCAAAC--------------------------------GGT-GC-------------------------------------------------ACAGCAGCAG------CAACATC------------------------AGCAGCAGC----------------A-GCAGCAGCAGC------ACCA-------------TCAACAG--------------------------------------------------------CAGCAGCATCACCAACAG------------------------------------------------CAACA---------ACGTGTTGTTGCCAGC-------------------AGC---AAC-CAGCAA
dm3 chrX:7583095-7583322 - AGGAGTCGACCGGA-GGA----GC--------------------------------------------------------AGCAAGT-----------------------------GGATCG-GCAC----CAGCAGCATCAA-----------------------------------------------------------------------------------C------------------------------------------------------------------------------------TGTGTACAGC-----------------------------ACCACAACGGTGCACAAAGGAGCCAGTGGCACCACCACCGTGGTGGAGTACAAGGCC-----------------------------AGCAAA-----------------------------------------GCCA-----------------------------------------------------------------------------------------ATCAGCAGCAACAAAATTCGCCGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAAC
droSim2 x:3663597-3663828 + AACAGCCG----C--------------GAATGGAGAGAACAACCTGC----------------------------------------------------------------------------------------------------ATGCACCGCATCTGAGTCGCTTTG------------------------------------------------------------------------------------------T----GGGTCTCCAGAGT--CCGCCACAT--CAGCC-----------------------------------------------------------------------------------------------------------------------------------------------GCATCTCA-----ATCCTCAC------GGTCATCACCAGCAACAACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCAGCA-ACAACAACAGCAGCAGCAACA-------------GCAGCAA--------------------------------------------------------------------------CATAC---------------GTTGCA-------CCAGCAGAGAG---------GACCCTTCA----------------TAGA--------GGG---CAACGATGTC-CCAGAT
droSec2 scaffold_4:2744832-2745063 - AACAGCCG----C--------------GAATGGAGAGAACAACCTGC----------------------------------------------------------------------------------------------------ATGCACCGCATCTGAGTCGCTTTG------------------------------------------------------------------------------------------T----GGGTCTCCAGAGT--CCGCCACAT--CAGCC-----------------------------------------------------------------------------------------------------------------------------------------------GCATCTTA-----ATCCTCAC------GGTCATCACCAGCAACAACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCAGCA-ACAACAACAGCAGCAGCAACA-------------GCAGCAA--------------------------------------------------------------------------CATAC---------------GTTGCA-------CCAGCAGAGAG---------GACCCTTCA----------------TAGA--------GGG---CAACGATGTC-CCAGAT
droYak3 2L:4903029-4903241 + CAGAGCCAGCAGCA-ATATC--AC-----------------------------------------------------------G-----------------------------------AAA-----------------------------------------------------GCAATAATAACATCACTTATA--GTAGCCAT---AAGAATAG----------------------------------CAGCAGCAGC-----------------------------AACAACA------------------------------------------------------------------------------------------------GCAGCTTAA-----ACAGCAGCAGCA---GCAACAACAGCA-----------------------GCTTA------AACAG------------CA---GCA------G---------------------------------------C----AACAACAAC------AGCA-----GCTTA-------------------------------------------------------------------------------------------------------------------------------------------------A-ACAGCAGCAGC------CACA-------------ACAACAG---C---------AGCA-----------------------G---------------------------------CTT---------------AAACAGCAGCAGCAACA-------A-----GAACG---------AC-----------AGC-----------------------------AACAGC
droEre2 scaffold_4690:14125798-14126031 + TCGAGCAAACCAGT-----------------------------------------------------------------TA--------------------------------------------------------------------GC-----------------------------AAGGGTTG--CTTATAAATGTACCA------AGACAG----------------------------------CGGCTGCAGC-----------------------------AGCAGTA------------------------------------------------------------------------------------------------GCAGTCGAC-----GCGGCAGCAGCA-GTGCAGCAGCAGCA-----------------------ACATC------TACAG------------CA---GCA------AC---------------------------------TGCAGC----AGAAACTGC------TGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GCA--------------------------GCAGCAACAGCAGCAGCAGCAGCAACCACAAC--------------------------------------------------CAGCAGC------------------------------------------------------AGCGACGAGGAAACACTCGA-----GACTC--TG----------------ACGA--------TTA---TAACGACCACCATCACC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAGAGCCAGCCGGA-TGG----CTGGCAAATGGACGGAGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCATCA--A---------------------AG--------------------------------------CAGTTAGAGTCACAGACTCGTAG----------------------------------------------------------------------------------------------AGTAGCA----GAGTACTT------------GCAAAAAT-----ATTATTAT-GATTGCCACAG------------CA---GCAGCGGCAGCAACTGCAGCTCA----------------------------------------GCGAAA--------------------------------AGTAGC------------------------------------------------------CCAGG------CAACA------------------------CCA-------------GCAGCA---GCA-GCAGCAGCAGCAGCAGCACCA-------------GCACCAA--------------------------------------------------------------------------TTCTG---------------GGTG-G-------CTAGAAAAGAC---------GACGA--TG----------------ATGA--------CGA---CGACGACGAC-CCAGACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------------CCA-------------GCAGCA---GCA-GCAGCAGCA...........................................................................................................................................................................................................................23200.10201010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---------GACGA--TG----------------ATGA--------CGA---CG...............19130.08100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---GCA-GCAGCAGCAGCAGCAGCACC................................................................................................................................................................................................................26150.07100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGA--TG----------------ATGA--------CGA---CGACGAC..........20200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA--TG----------------ATGA--------CGA---CGACGACGA........20200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCACCA-------------GCA...............................................................................................................................................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------CCA-------------GCAGCA---GCA-GCA.................................................................................................................................................................................................................................19200.05100010
droVir3
CAGCAGCAGCCGCA-GCA----GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGCAGCAGCAGCAGCA--GC------------------------AGTAGTAATTAGCTG------------------CAGC--------------------------------AGCA---------------------------------ACAGCC---------------------------------------------------------GCAGCAGCAGCAGC--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAGC----AGCAACAGC------AGCAGCAAA--------TGCAGCAACATCAAAATCAGC------------------------------------------------------TGCCG------TAAC------------AGC------------C-------------GCAGCA---GCA-GCAGCAGCAGC---AGCAGCA-------------GCAGCAG---C-----------------------------------------------AGCAGCCACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------TGCAGCAACATCAAAATCAG................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATCAAAATCAGC------------------------------------------------------TGCCG------TAA...........................................................................................................................................................................................................................................................................................2311.001000000100000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------------------------------------------------TGCCG------TAAC------------AGC------------C-------------GCAGCA---GCA-....................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................CTG------------------CAGC--------------------------------AGCA---------------------------------ACAGCC---------------------------------------------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.201000000000000000000000000000000000010000000000000000000000000000
............CA-GCA----GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGCAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGC--A---------------------------GCCGCAG-----------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.153003000000000000000000000000000000000000000000000000000000000000
........GCCGCA-GCA----GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GCC---------------------------------------------------------GCAGCAGCAGCAGC--A---------------------------GCCGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2390.111001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------GC---------------------------------CGCAGC----AGCAACAGC------A....................................................................................................................................................................................................................................................................................................................................................................................................2190.111001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................CAGC--------------------------------AGCA---------------------------------ACAGCC---------------------------------------------------------GCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---C-----------------------------------------------AGCAGCCACAACAACA........................................................................................................................23120.081001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................AGC--------------------------------AGCA---------------------------------ACAGCC---------------------------------------------------------GCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.071000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CAGC--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------CG............................................................................................................................................................................................................................................................................................................................................................................................................................21160.061001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAGC----AGC.................................................................................................................................................................................................................................................................................................................................................................................................................22180.061000000000000000000000000000000010000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---C-----------------------------------------------AGCAGCCACAACAAC.........................................................................................................................20190.051000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG---C-----------------------------------------------AGCAGCCACAAC............................................................................................................................20200.051000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------GCAGCAG---C-----------------------------------------------AGCAGCCACA..............................................................................................................................19200.051001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGC--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000001000000000000000000000000000000000000000000
......................GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGCAGCAGCAGCAGCA--..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC--A---------------------------GCCGCAG-----------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................AGC--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A---------------------------------ACAGCC---------------------------------------------------------GCAGCAGCAGCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAACAACAACAACAA------------------------------------------------CAAC.............................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCA-------------GCAGCAG---C-----------------------------------------------AGCAGCCAC...............................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................C--A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
................CA----GC-----------------------------------------------------------A-----------------------------------GCA-----------------------------------------------------GCAGCCGCAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................A---------------------------------ACAGCC---------------------------------------------------------GCAGCAGCAGCAGC--...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGC----AGCAACAGC------AGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GCCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAGC----....................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................A-----------------------------------------------------GCAGCCGCAGCAGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
....AGCAGCCGCA-GCA----GC-----------------------------------------------------------A-----------------------------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCAG-----------------------------------------CAGCA---------GC---------------------------------CGCAGC----AG..................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
droMoj3
CTGAACAAGGCCGCAAA---TGCTAGCAA---------A----CAGC------------------------------------A----------------------------------------------------ACAACAG---C---------T------------GCATATACT-----------------------------------ACAG----------------------------------CAGCAGCAGC-----------------------------AGCAGCA------------------------------------------------------------------------------------------------GCAACTACT-----ACAGCAGCAGCA---GCAGCAGCAGCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CAGCAGCAGCAGCAGC------AGCAGCAGCAGC------------AGCAGCAGC----AGCAGCA---GCAG-CA-------------------------------G------------CAGCAGCAGCA-----------------------GCAGCAGCAGCAGCAGCC------------------AATC---------------AA------------------------------GACAA--AG----------------AAGA--------GGG---CGAAGAAGAA-GACTACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC---------------AA------------------------------GACAA--AG----------------AAGA--------GGG---CGAAG............2430.672200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---------------AA------------------------------GACAA--AG----------------AAGA--------GGG---CGAAG............2330.331100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCC------------------AATC---------------AA------------------------------GACAA--AG----------------AAGA--------.......................2830.331100000
..........................CAA---------A----CAGC------------------------------------A----------------------------------------------------ACAACAG---C---------T------------GCATATAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2640.251100000
............................................AGC------------------------------------A----------------------------------------------------ACAACAG---C---------T------------GCATATACT-----------------------------------ACAG----------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CAGCAGC......................................................................................................................................................................................................................................................................................................21200.204400000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------AGCAGCAGCAGC------------AGC............................................................................................................................................................................................................................................................19200.153300000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................23140.142200000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACT-----ACAGCAGCAGCA---GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23140.142200000
..............................................................................................................................................................................TACT-----------------------------------ACAG----------------------------------CAGCAGCAGC-----------------------------AG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----G...........................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................TACT-----ACAGCAGCAGCA---GCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------ATT..................................................................................................................................................................................................................................................................................................................................................................................................26110.091100000
......................................................................................................................................................................................................................................................................................................GCA------------------------------------------------------------------------------------------------GCAACTACT-----ACAGCAGCAGCA---TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26110.091100000
.............................................................................................................................................................................................................................................................................................................................................................................................................CTACT-----ACAGCAGCAGCA---GCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.081100000
............................................................................................................................................................................................................................................................................................................................................................................................................ACTACT-----ACAGCAGCAGCA---GCAGCAGCAGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................29120.081100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................22120.081100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CAGT.........................................................................................................................................................................................................................................................................................................29120.081100000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAACTACT-----ACAGCAGCAGCA---GCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24140.071100000
.......................................................................................................................................................................................................................................................................................................CA------------------------------------------------------------------------------------------------GCAACTACT-----ACAGCAGCAGCA---GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25140.071100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----............................................................................................................................................................................................................................................................................................................................................................................................24140.071100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----------------------ACTAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGC..................................................................................................................................................................................................................................................................................................................................................................................................25140.071100000
..............................................................................................................................................................................................................................................................................................................................................................................................................TACT-----ACAGCAGCAGCA---GTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CA...........................................................................................................................................................................................................................................................................................................23200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GCAG---------------------------------------------------------------------------CAG..........................................................................................................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................TACT-----------------------------------ACAG----------------------------------CAGCAGCAGT-----------------------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000001
..............................................................................................................................................................................TACT-----------------------------------ACAG----------------------------------CAGCAGCAGC-----------------------------AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................CT-----ACAGCAGCAGCA---GCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
..............................................................................................................................................................................................................................................................................................................................................................................................................TACT-----ACAGCAGCAGCA---GCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC------TACAG------------CA---GCA------G---------------------------------------C-------------------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.................................................................................................................................................................................T-----------------------------------ACAG----------------------------------CAGCAGCAGC-----------------------------AGCAGCA------------------------------------------------------------------------------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-----------------------GCAGCAGCAGCAGCAGCC------------------A..............................................................................................................23200.051000100
.................................................................................................................................................................................................................................................................................................................................................................................................................T-----ACAGCAGCAGCA---GCAGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
droGri2
CAGCGGCAGCAGCA-GCA----GC-----------------------------------------------------------G-----------------------------------GCA-----------------------------------------------------GCAGCAGCAGCAGCAGCGGCA--GC------------------------AGC-------------------------AGCAGCAGCAGCGGC-----------------------AGCA------------------------------------GTAGCAGCA------------------------------------------------------GCAGCGGCA-----GCAGCAGCAGCA---GCAGCGGC------AGCGGC-----------------AGC------AGCAG---------------------------C---------------------------------AGCGGC----AGCAGCAGC------AGCA-----GCAGCA---------------------------------------------------------------------------------------------------------GC------------AGCAGCAGC-----------------------------------GGCA-------------GCAGCAG---C---------AGCG-----------------------G---------------------------------CAA---------------CGGCAGCAGCAGCAGCG-------G-----CAGTG---------GC-----------AGC--GG--------CAG---CATCAGCA---TCAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GCAGCGGC------AGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20440
dp5
CAGCGCCTGAAGAA-ACA----GC--------------------------------------------------------AGC----------------------------------------------------------------------------------------------------GACAGTA--------------------------GCAGCAGCAGCGAGAAGAAGCAGTGACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCAAAAACAGC---------------GAGAGGAGCAGCAGCGCCAGCAACAAAAGCAGAAGCAGCGCC-----------------------------AGCAGC-----------------------------------------AGCAGAG---------AC---------------------------------AGCAGA----AGCGACAGC------AGCA-----GCGAGAGG---------------------------------------------------------------------AGCAGCAGCAG------CAGCGTCAGCAGCAGCAGC-------------------------------------G-TCAGCAGCAGC------AGCG-------------TCAGCAG------------CAGCA-----------------------GCGTCAGC---AGCAGCAG------------------A-------------------------------------------------GACCA--AG----------------ACGA--------CGA---CGACGACGAC-ACTGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAG------CAGCGTCAGCA...................................................................................................................................................................................................................................................................................2270.2920200000000
.................................................................................................................................................................................................................................................ACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.1310000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAG------CAGCGTCAGCAGC.................................................................................................................................................................................................................................................................................2190.1110000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------AGCG-------------TCAGCAG------------CAGCA-----------------------GC.................................................................................................................................................2290.1110000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------AGCG-------------TCAGCAG------------C..............................................................................................................................................................................2190.1110000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC-------------------------------------G-TCAGCAGC............................................................................................................................................................................................................................2190.1110000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAGCGTCAGCAGCAGCAGC-------------------------------------......................................................................................................................................................................................................................................2290.1110000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC-------------------------------------G-TCAGCAGCAGC------AGC................................................................................................................................................................................................................2290.1110000000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------CAGCA-----------------------GCGTCAGC---AGC.....................................................................................................................................2190.1110000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-----------------------GCGTCAGC---AGCAGCA.................................................................................................................................20110.0910100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------AGCG-------------TCAGCAG------------CAGCA-----------------------...................................................................................................................................................20110.0910100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAGCGTCAGCAGCAGCA.............................................................................................................................................................................................................................................................................20110.0910100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC-------------------------------------G-TCAGCAGCAGC------A..................................................................................................................................................................................................................20110.0910100000000
droPer2
AAGATGCAGCAGCG-ACT----GA-----------------------------------------------------------A-----------------------------------AAA-----------------------------------------------------ACAGCAGCGACAGCAGCAGCA--GC------------------------AGCGAGAAGAAGCAGCGACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCAGAAACAAC-----------------------------------------------------------GAGAGG---------AGCAGCAGCGCCAGCAGC-----------------------------------------AGCAGCG---------AC---------------------------------AGCAGA----AGCGACAGT------GGCA-----GCGAGA---------------------------------------------------------------------------------------------------------------------GGA-----------------------------------GCAGCAGCGACA-------------GCAGCAG--------------------------------------------------------------------------CAGAGA---------CCAAGACGACGGCGACGACG-------G-----CGACG---------AC-----------G--GCGA--------CGA---CGACGACGAC-ACTGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-----------------------------------------AGCAGCG---------AC---------------------------------AGCAGA----AGCGACA.............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
.................................................................................................................................................................................................................................................ACAG-----------------------------------------------CA------------------------------------GCAGCAAAAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.171001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------------GCAGCAGCGACA-------------GCAGC.............................................................................................................................................................................................18190.051010000
...................................................................................................................................................................................CAGCGACAGCAGCAGCA--GC------------------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droAna3
CAGTGCCCGGCCAG-C----AGGTGGC-------CGGTGTG--CCGCCACAGATGGGGATGCAGCACGGGCCGGGGGATCC-------------------------------------------------------------------------------------------------GCAAGGACCA--CCCGTTCAGATGCCACCCTACGGCCAG----------------------------------CAGCAGCAGC-----------------------------AACAGCCGCAGCCACATCCCGGCCTGCCGCCAGGCGCTC-----------------------------------------------------------------------------------------------AACAGCAATCTCAGCAAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GGC--------------------------ACAACAACAACAGCAGCAGCAGCAACAACAGGCGG------------CAGCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------GC-----------AGC----------------------AG------CAGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGC------AGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GGC--------------------------ACAACAAC............................................................................................................................................................................................................................2711.001010000
.AGTGCCCGGCCAG-C----AGGTGGC-------CGGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
CAGTGCCCGGCCAG-C----AGGTGGC-------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.................................................................ACGGGCCGGGGGATCC-------------------------------------------------------------------------------------------------GCAAGGACCA--CCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAGCAAC-----------------------------------------AGCAGCA---------GC---------------------------------AGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2120.501010000
.................................................................................................................................................................................................................ACGGCCAG----------------------------------CAGCAGCAGC-----------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG------------CAGCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------GC-----------A.....................................2220.501100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----A...................................................................................................................................................................................................................................................................................................................................................................................................................19200.459000009
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGC--------------------------ACAACAACAACAGCC.....................................................................................................................................................................................................................1850.201010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AACAA...............................................................................................................................................................................................................................................................................................................................................................................................................23200.204300001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AAC.................................................................................................................................................................................................................................................................................................................................................................................................................21200.153000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAGCA............................................................................................................................................................................................................20200.153000003
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----....................................................................................................................................................................................................................................................................................................................................................................................................................21200.102001001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------GC-----------AGC----------------------.............20140.071010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------------CAGCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------GC-----------......................................20180.061100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GCAAC.......................................................................................................................................................................................................................................................................................................................................................................................26190.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AACAACA.............................................................................................................................................................................................................................................................................................................................................................................................................24190.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAACAAC.......................................................................................................................................................................................................20200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGCAGCAACA.........................................................................................................................................................................................................24200.051000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAC-----------------------------------------AGCAGCA---------GC---------------------------------AGCAAC----AAC.................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---------GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................27200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCGGCG-----------------------GC---------------------------------------------------------------------------------AGCA---------G..................................................18200.051100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCAGCAGCAAC..........................................................................................................................................................................................................25200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCAGCAAC..........................................................................................................................................................................................................24200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---------------------------------AGCAAC----AACAACAGC------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGC------AGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------G................................................................................................................................................................................................................................................................19200.051000001
droBip1
CCA-----GCAGAT-GGA----TC--------------------------------------------------------CGCAACT-----------------------------GGATCC-----------------------------------------------GTACCAGCT------------CCATCA-----------------CCAG----------------------------------CAGCAGCTGG-----------------------------AGCAAAT------------------------------------------------------------------------------------------------GCAGCAGAC-----GCAGCAGCAGCTGGAGCACCAGCAGCA-----------------------ACTGG------AGCAG------------CA---GCA------A---------------------------------------C----------------------T-----GG---------------------------------------------------------------------------AGCATCAGCAG------CATCTCGAGCAGCAGCATC------------ACCAGCAGC----AGCAGCA---ACTG-GA-------------------------------G------------CAGCAGCAGCA-----------------------GCAACAACAACAACAT------------------CAGATC---------------CTGGC-------CCAGC-----------------------------------------CGCCGGCGAAGAAGCGACGAGGAGGCG-CCACACSizeHit CountTotal NormTotal
No Reads
droKik1
CAGAGCGGAACGGAGGGC----GT-------------GGC----------------------------------------AGCTGTA-----------------------------GGAATA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCATGGCATCATCATTAAATATCATT-----------------------------AACACAGC------------------------------------------------------AAC---------------------------------------------------------------------------------------------------GAACAAGCGGCAGCAGCACCGA---CAAC-T--GA----CAGCGC--------------------------------AGCAAC------------ATCAGCAACAGCAGCAGC---------AACAG------------------------------CAGCAGCAAC---------ATCA--------------------------------GCAGCAGCAGCAGTA-------------GC--------------------------------------------------------------------------------------------------------------------------------AGCA---------AC-----------AAA-----------------------------AGCAGCSizeHit CountTotal NormTotal
No Reads
droFic1
CAGAAGCAGCCGGA-TTA----TA-----------------------------------------------------------A-----------AA----------------------AGT-----------------------------------------------------CCA------------CC------------A--------TTA------------------------------AGCAGCAGCAGCAGC-----------------------------AACAGCTACAGA-------------------AGAAGCTCAAAAGTGACGGCGGTGGCAACTACAATAT---------------------------------AATC----------------------------------------------------A-----AGCAACACA------AACA---CGAGCAGCAGCAG---------C------------------------------AGGAACAG---CAACA---------------------------------------------------------------------------------AC---------AACAGCAAC---------------------------------T----------------------------------GCAGCA-GCA---GCAGCAGCAGCAGCA-------------ACAGCAA--------------------------------------------------------------------------CAGAGTGTGGCAGCTT-----------TGGC------------------TGTT---------AA-----------TC--AGA--------CGG---CGAAGG------CGACGSizeHit CountTotal NormTotal
No Reads
droEle1
AAA-GCCGGGAAAA-T----TGCTGGC-------CAGTG----CAGCAGCAACAGCCAAAACAGTGTCGAAAAACCGGTTA--------------------------------------------------------------------GC-----------------------------AAGGGTTG--CTTATAAATGTACCA------GGACAG----------------------------------TGGCTGCAGC-----------------------------AGCAGTA------------------------------------------------------------------------------------------------GCAGTCGAC-----GCGGCAGCAGCA-GTGCAGCAGCAGCA-----------------------ACATC------AACAG------------CA---GCA------A---------------------------------------C-------------------TGCA-----GCAG-------------------------------------------------------------------------------------------------------------------------------------------------CA-GCAGCAGCAACAGCAGAAGCA-------------GCAGCAACTGAAGTG-----------------------------------------------GCAGCAACATCTACGACAG------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAGCAGCAGCA-CTT----TG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----CTGCCTGCAGCAGCGCTACGACAA--CAACTACAGCGTCAGCGTTGACTACCAGTAGAGGCCC--------------------------------------------------------------------------------------------------A------------GTGAAAAATGTGACCCATAAC-ACTAGCGACAGTAGCAGCAACACC---------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAGTAG------CAACACCAACAACAGCAGCCCCAGCAACATCA-----------------------------------GCAGCAGCAACA-------------GCAGCAG---------------CCAGACAAGCGAGATGACTACGCGGGCAACAGC---AGCAACAA------------------A-------------------------------------------------CACGA--ACAC-----------GAC----------------------GG------CAACCSizeHit CountTotal NormTotal
No Reads
droBia1
CAGGAGCAGCAGGA-GCC----AG-------------GGCA----------------------------------------GCTGGACCAAAGCAACAGACGACCGCAACAAGTGGGGGACAGCTGCCAGGTGACAGCAACAATATTGTGAAGTATCCCTAAAGCGCTCAA------------AGCAACAGTGACA--------------------G----------------------------CAG---CAACAACAGCAGCAAC-----------------------AGCA---------------------------------------------------------------------------------------------------------ATA-----GCAGCAGCATCA------------------GCAGC-----------------------------------------AGCAGCA---------AC---------------------------------AACAAC----AGCAACAGC------AATA-----GTAA---------------------------------------------------------------------------TAGCAGCAGCAGCAGC------AGCAGCAGCAAC------------AGCAGCAGC----AGCAGCA---ACAG-CA-------------------------------G------------CAACAACAGCA-----------------------ACAGCAGC---------------------------------------------------------------------------------------------------------------------------AGCAACAGC-ACACATSizeHit CountTotal NormTotal
No Reads
droTak1
CGAAGAAGAGCCA-----------------------GAAGAACCTGC------TGCC------------------------GGG-----------------------------------ATA-----------------------------------------------------CCAGC---GACTGGA--------------------------GCAGCAGCAGCG--GAGCAGCAAGGACTA-----------------------------------------------CA------------------------------------AGAACTATGGCAATCTCATCTACGCCAA------------------------------------------------------------------------------------------------------------------G---------------------------C------------TGAGTGAGCAGCTGCAGCAGAAG---GATC------------------------------------------------------------------------------------------------------------------------------------------------------GGGAGCAGCGGCG-------CCAGCG-GCACAAACAGCAGCAGCAGCA-------------GCAGCAA---C---------ATCA-----------------------GCTGTTGC-------------------------------------AGGAT-----------CAGC------------------ACAA---------GG-----------AC--AAG--------GAG---CCACGACCAC-C---CASizeHit CountTotal NormTotal
No Reads
droEug1
AGCAGC-AGCAGC----------------------------------------AGCA------------------------GTA-----------------------------------ACA-----------------------------------------------------GCAAC---AACACT--------------------------AG----------------------------------CAGCAGCAAC-----------------------------AACAATA------------------------------------------------------------------------------------------------GTAACA-------------------------------------------------------------AC------AACAG------------CA---GCAGCAGCAACAACAACAACACA----------------------------------------CCAAAC--------------------------------GGT-GC-------------------------------------------------ACAGCAGCAG------CAACATC------------------------AGCAGCAGC----------------A-GCAGCAGCAGC------ACCA-------------TCAACAG--------------------------------------------------------CAGCAGCATCACCAACAG------------------------------------------------CAACA---------ACGTGTTGTTGCCAGC-------------------AGC---AAC-CAGCAASizeHit CountTotal NormTotal
No Reads
dm3
AGGAGTCGACCGGA-GGA----GC--------------------------------------------------------AGCAAGT-----------------------------GGATCG-GCAC----CAGCAGCATCAA-----------------------------------------------------------------------------------C------------------------------------------------------------------------------------TGTGTACAGC-----------------------------ACCACAACGGTGCACAAAGGAGCCAGTGGCACCACCACCGTGGTGGAGTACAAGGCC-----------------------------AGCAAA-----------------------------------------GCCA-----------------------------------------------------------------------------------------ATCAGCAGCAACAAAATTCGCCGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
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Ovary		SRR010953
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Ovary		SRR010957
Ovary		SRR010958
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Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
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Ovary		SRR014282
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S2		SRR023402
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S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
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gb3		SRR031692
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S2		SRR032095
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Ovary		SRR060647
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Ovary		SRR298711
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Ovary		SRR317110
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Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
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S2		SRR341117
S2		SRR341118
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OSC		T005
CME-L1		V001
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S2		V009
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ML-DmD20-C5		V011
Sg4		V012
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DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
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1182-2H		V027
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CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
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CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
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fGS/OSS		V092
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S2-R+		V096
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ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
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ML-DmD8		V135
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OSC		V145
S2		V146
S1		V147
1182-2H		V148
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------............................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AA....19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACAA------------------------------------------------CAACA---------...................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACA..................................................................................................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACAA------------------------------------------------CAACA---------...................................................26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAAC............................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------...................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAA.19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AAC...25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACAAC25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAAC......................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CA.................................................................................................................................27200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------A.....................................29200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAACAGCAGCAGCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA------------------------------------------------CAACA---------AC-----------AAC-----------------------------AACA..26200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAAC------------------------------------A---------------------------------------------------------------------------------A--------------------------------------------------------CAACAACA...........................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACAA------------------------------------------------CAACA---------AC-----------......................................25200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
AACAGCCG----C--------------GAATGGAGAGAACAACCTGC----------------------------------------------------------------------------------------------------ATGCACCGCATCTGAGTCGCTTTG------------------------------------------------------------------------------------------T----GGGTCTCCAGAGT--CCGCCACAT--CAGCC-----------------------------------------------------------------------------------------------------------------------------------------------GCATCTCA-----ATCCTCAC------GGTCATCACCAGCAACAACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCAGCA-ACAACAACAGCAGCAGCAACA-------------GCAGCAA--------------------------------------------------------------------------CATAC---------------GTTGCA-------CCAGCAGAGAG---------GACCCTTCA----------------TAGA--------GGG---CAACGATGTC-CCAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC------GGTCATCACCAGCAACAACAG---------A------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAACA-------------GCAGC.............................................................................................................................................................................................23180.06100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------------------------A----------------------------------GCAGCA-ACAACAACA...........................................................................................................................................................................................................................21200.05100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACA-------------GCAGC.............................................................................................................................................................................................15200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACA-------------GCA...............................................................................................................................................................................................19200.05100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAGCAGCAGC...................................................................................................................................................................................................................17200.05100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------........................................................................................................................................................................................................................................................................................................................21200.05100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCA........................................................................................................................................................................................................................................18200.05100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCAACA-------------GC................................................................................................................................................................................................22200.05100000000000100000
droSec2
AACAGCCG----C--------------GAATGGAGAGAACAACCTGC----------------------------------------------------------------------------------------------------ATGCACCGCATCTGAGTCGCTTTG------------------------------------------------------------------------------------------T----GGGTCTCCAGAGT--CCGCCACAT--CAGCC-----------------------------------------------------------------------------------------------------------------------------------------------GCATCTTA-----ATCCTCAC------GGTCATCACCAGCAACAACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCAGCA-ACAACAACAGCAGCAGCAACA-------------GCAGCAA--------------------------------------------------------------------------CATAC---------------GTTGCA-------CCAGCAGAGAG---------GACCCTTCA----------------TAGA--------GGG---CAACGATGTC-CCAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CCAGCAGAGAG---------GACCCTTCA----------------TAGA--------.......................2511.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------GC---------A.......................................................................................................................................................................................................................................................................................................................26170.0610010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACA-------------GCA...............................................................................................................................................................................................18200.0510010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACA-------------..................................................................................................................................................................................................19200.0510010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---------C------------------------------AGCAGCAG---CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAG---------C------------------------------AGCAGCAG---CAACA---------------------------------------------------------------------------------...................................................................................................................................................................................................................................................................................................................................18200.0510001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACA-------------GCAGCAA--------------------------------------------------------------------------C................................................................................................................19200.0510010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------------------------GC---------AACAGCAGC---------------------------------A----------------------------------GCAGCA-ACA.................................................................................................................................................................................................................................24200.0510010
droYak3
CAGAGCCAGCAGCA-ATATC--AC-----------------------------------------------------------G-----------------------------------AAA-----------------------------------------------------GCAATAATAACATCACTTATA--GTAGCCAT---AAGAATAG----------------------------------CAGCAGCAGC-----------------------------AACAACA------------------------------------------------------------------------------------------------GCAGCTTAA-----ACAGCAGCAGCA---GCAACAACAGCA-----------------------GCTTA------AACAG------------CA---GCA------G---------------------------------------C----AACAACAAC------AGCA-----GCTTA-------------------------------------------------------------------------------------------------------------------------------------------------A-ACAGCAGCAGC------CACA-------------ACAACAG---C---------AGCA-----------------------G---------------------------------CTT---------------AAACAGCAGCAGCAACA-------A-----GAACG---------AC-----------AGC-----------------------------AACAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG------------CA---GCA------G---------------------------------------C----AACAACAAC------AGCA-----............................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAACAGCA-----------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCA------G---------------------------------------C----AACAACAAC------AGCA-----GC..........................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---GCAACAACAGCA-----------------------GC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
........................................................................................................................................................................................................................G----------------------------------CAGCAGCAGC-----------------------------AACAACA------------------------------------------------------------------------------------------------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
droEre2
TCGAGCAAACCAGT-----------------------------------------------------------------TA--------------------------------------------------------------------GC-----------------------------AAGGGTTG--CTTATAAATGTACCA------AGACAG----------------------------------CGGCTGCAGC-----------------------------AGCAGTA------------------------------------------------------------------------------------------------GCAGTCGAC-----GCGGCAGCAGCA-GTGCAGCAGCAGCA-----------------------ACATC------TACAG------------CA---GCA------AC---------------------------------TGCAGC----AGAAACTGC------TGCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GCA--------------------------GCAGCAACAGCAGCAGCAGCAGCAACCACAAC--------------------------------------------------CAGCAGC------------------------------------------------------AGCGACGAGGAAACACTCGA-----GACTC--TG----------------ACGA--------TTA---TAACGACCACCATCACCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGAC-----GCGGCAGCAGCA-GTGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-GTGCAGCAGCAGCA-----------------------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAC-----GCGGCAGCAGCA-GTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAGTCGAC-----GCGGCAGCAGCA-GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..................................................................................................................................................................................................TAAATGTACCA------AGACAG----------------------------------CGGCTGCAGC-----------------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................GTCGAC-----GCGGCAGCAGCA-GTGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAC-----GCGGCAGCAGCA-GTGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
..GAGCAAACCAGT-----------------------------------------------------------------TA--------------------------------------------------------------------GC-----------------------------AAGGGTTG--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAC-----GCGGCAGCAGCA-GTGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................CGAC-----GCGGCAGCAGCA-GTGCAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-----------------------ACATC------TACAG------------CA---GCA------AC---------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................TG--CTTATAAATGTACCA------AGACAG----------------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
......................................................................................................................................................................................................................................................................................................GTA------------------------------------------------------------------------------------------------GCAGTCGAC-----GCGGCAGCAGCA-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAACACTCGA-----GACTC--TG----------------AC.................................2111.0010100000
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCGAC-----GCGGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------------------------------------------------------------------------------------------GCA--------------------------GCAGCAACAGCAGCAGCAGC................................................................................................................................................................................................................26200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------------------------------------------------------------------------------------------------------------------GCA--------------------------GCAGCAACAGC.........................................................................................................................................................................................................................19200.0510100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA-----GCAACA---------------------------------------------------------------------------------------------------------------------GCA--------------------------GCAGCAACAGCAGCAGC...................................................................................................................................................................................................................29200.0510100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACCA........................................................................................................................................................................................................19200.0511000000

Generated: 05/17/2015 at 11:15 PM