ID:

dwi_480

 Coordinate:

scf2_1100000004511:1152837-1152987 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.8 -1.7

Flybase annnotation

exon [dwil_GLEANR_17458:4]; CDS [Dwil\GK17134-cds]; intron [Dwil\GK17134-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
(A)nSimple_repeatSimple_repeat+
mature
star
  1. scf2_1100000004382:845888-845911 +
  2. scf2_1100000004510:3373103-3373126 +
  3. scf2_1100000004511:18380-18403 +
  4. dwi_480  scf2_1100000004511:1152860-1152883 +
  5. scf2_1100000004515:3348083-3348106 +
  6. scf2_1100000004515:3348380-3348403 +
  7. scf2_1100000004515:4284288-4284311 +
  8. scf2_1100000004521:5960672-5960695 +
  9. scf2_1100000004577:2457576-2457599 +
  10. scf2_1100000004590:2068227-2068250 +
  11. scf2_1100000004768:2365314-2365337 +
  12. scf2_1100000004768:2365344-2365367 +
  13. scf2_1100000004943:8154302-8154325 +
  14. scf2_1100000004945:14431-14454 +
  15. scf2_1100000004902:2783536-2783559 +
  16. scf2_1100000004902:5908610-5908633 +
  17. scf2_1100000004909:5179550-5179573 +
  18. scf2_1100000004921:1178705-1178728 +
  19. scf2_1100000004921:3300206-3300229 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CTTCTGCTTTGGAGTTGGGTGCTCTACGCAAGGGCATGGCGGGAGGTGCGGTAAGTCCGTTTTCATTATAAGAACAACAACAACAAGAACAACAACAACAACAAGTGCCACACCCACCTCCGCCTACAACTCTAACCCGTAGTTGATCTACTCCTACTACTTACTACTTACTTTTTGACTAAAAAAACAAAAAAAAAAAAAGAAAAACCAAAAAAAAGAGAAAAAAAACAAAAAATTACAAAATTTTATTC
*************************************************************************..................................................((((...........))))..*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
 V118
embryo
................GGGTGCTGCACGCAAGTGCA....................................................................................................................................................................................................................... 20 3 5 5.60 28 28 0 0 0
...................................ATGGCGGCAGGTGCGGCATGT................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0
.......................................................................................................................CCGCCTACAACTCTAACCCGTAGTT........................................................................................................... 25 0 1 1.00 1 0 0 1 0
..............................AGGGCATGGCGGGAGGTGCGGT....................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
...................................................................................................................................................CTACTCCTACTACTTACTACTTACT............................................................................... 25 0 1 1.00 1 1 0 0 0
....................GCTCTACGCAAGGGCATGGCGGGA............................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0
.............................ACGGGCATGGCGGTAGGGGC.......................................................................................................................................................................................................... 20 3 2 1.00 2 2 0 0 0
.............GTTGGGTGCTGTGCGCATGGG......................................................................................................................................................................................................................... 21 3 2 0.50 1 0 1 0 0
...................................................................ATAAGAACAACAACAACC...................................................................................................................................................................... 18 1 20 0.10 2 0 0 2 0
.........................................................................................................................................................................................AACAAAAAAAAAAAAAGA................................................ 18 0 20 0.05 1 0 0 0 1
.........................................................................ACAACAACAACAAGAACAACAACA.......................................................................................................................................................... 24 0 20 0.05 1 0 0 0 1
.......................................................................................................................................................................................AAAACAAAAAAAAAAAAA.................................................. 18 0 20 0.05 1 0 0 0 1
........................................................................................................................................................................................AAACAAAAAAAAAAAAAGAAA.............................................. 21 0 20 0.05 1 0 0 0 1

Anti-sense strand reads

GAAGACGAAACCTCAACCCACGAGATGCGTTCCCGTACCGCCCTCCACGCCATTCAGGCAAAAGTAATATTCTTGTTGTTGTTGTTCTTGTTGTTGTTGTTGTTCACGGTGTGGGTGGAGGCGGATGTTGAGATTGGGCATCAACTAGATGAGGATGATGAATGATGAATGAAAAACTGATTTTTTTGTTTTTTTTTTTTTCTTTTTGGTTTTTTTTCTCTTTTTTTTGTTTTTTAATGTTTTAAAATAAG
***********************************************************************************************************..................................................((((...........))))..************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
........................................................................................................CACGGTGTAGGTGGTGGGGGA.............................................................................................................................. 21 3 8 0.13 1 1
........................................................................................................CACGGTGTAGGTGGTGGGGG............................................................................................................................... 20 3 20 0.05 1 1
.................................................................................................................................................................................................................TTTTTTTTCTCTTTTTTTGGTTTAT................. 25 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:1152787-1153037 + dwi_480 CTT--CTGCTTTGGAGTTGGGTGCTCTACGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------AACAACAA------CAACAAGAACAAC---------------------AACAACAACAAG------------------------------------------------------------------------TGCCACAC----------------------------------------------------------------------------------------CCACCTCCGCCTACAACT-CTAACCCGTAGTTGATCTACT------------CCTACT-----------------------------ACTTACTA-CTTACT------------------------------TTTT--------------GACTAAAA-AAA---CA-AAA--AAAA------------A----AAAA---GAAAAACCAA--AAAAAA--GAG-AAAA--AAA--------ACAAAA----AAT-TA--CAAA---------------ATTTTATTC
droVir3 scaffold_12932:1192967-1193184 + CGC--CCATAACGCTG----CTGGCCTAAGCAAACGCA---------------GCGGAAA-----------------------C-----------AGTTGCTAATC---------------------------------------------------------------G---AAGCGACAA---------C---AAT---------------------------------------------------------------------------------------------------------------CACAACAA---------------------CAACA-ACA-------AC------------------------A----A------AAACCCACCTAAGGAGCGGGCGGCTGGAGGGAAGGAGGCGTGGCCTAGGGCCT------------TGTA------------------------------------------------------------------------AGTTAATTAACG-------------------AAAGAAGA-G-----AAG------------G----GAAA---AAAAAACAAAAGCAA--AAACAA---AAA----A-------AAAAAC----AAC-AA--GCAA---------------A--AGTCTA
droMoj3 scaffold_6496:15170519-15170769 + CTT--TCCATTTTCAAATGCTTTTTGCTGGCATTGCAGC------CT---T--CAGTGCT-----------------------AGCCGGCAAGCTGGCCACGGCTGC---------------A----------------------------------------ACA---CCGACAAC------------------AACAACAACAGCAGCAAC------AACTGCTGCAGCAACAG------------------------------------------------------------------------------C----AAACGGCAGCAT----------------CG-----------------------------------------------ACAACGCCAGCAACAACCAGCGACAAC-TTTTCATTTCGTTTTTCACGC------------GGCG------------------------------------------------------------------------CATGCCAA-------------------AAACA-----A-AAAA--AAAAA----------------AAAA---CAAAAAAAAA--AAA--AAATAA---AAA----A-------ATAAAA----AAT-A-------------------------ATAAAA
droGri2 scaffold_15110:10688563-10688794 + CAT--CAGCATTTACAGCAACAAC---------------------------------------------AACATCTGGCGCTG--------------CTGC---------------AGCAACA----------------------------------------GGA---GCAACAGC------------------AGCAGCAGCAACAACAAC------AAC------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAACAACAGCAGCAGCAACA-GCAGCAAGTAGTTAACAT--GGCCATT------GCCACAACGGGCACAAATAATATTC-GACGTAAGTTCAA---AA------------------------------------TCGTCAA------TTCACGAA-AA-------A-------------------------G--------------------T--AAAAAA--AAG-TAAA--ATA--------GTAATA----TAT-TA--AAAT---------------AATTCATAT
dp5 2:28893425-28893630 + ATGATCCACATTTGAGTTTGAAAGTTCAT---AGGTCAA-----------G--AAAGGAGCTCCCCCGC--------------ATGCAACGGATTCATGCGCAACAAAAG-----------------------------------------------------------G---AGGCAACAA---------C---AAC---------------------------------------------------------------------------------------------------------------AACAACAA--------------AAAA-------AA---CAACA---------------------------------A------AAAA----CTT------------------------------------------------------------------------------------------------------TAGTTCTA------------------------------------------GAACAAAGCAA------ACAAAAAAAA------------ACC--ATAA---AAAAAACTAT--AAAAAA--TGAAA-G---------AAAAAA-----AAACA--AAAAAG--A---------------AAGTTAATT
droPer2 scaffold_13:40864-41156 + CAT--TTGCAATTGTGCAATAA-CTATAT----AATCAACACGACATTCAACAAC--------------AACAGCAA------C---------------------------------------AGTTGCCAAAATAGTTATCATAGTTATCACAGTTATCATAACAACA------------ACAACAACAAT---AACA------------ACAAT---------AACAATAACAACAATAA-----------------------------------------------------------------------------CAACAACAACAATAGC-------AC---CACAAACACC-----------------------------------------------------C--------------------------------------CCACCAAT-------CAAAACAACAACAGCAGCAACCAGCAG-------------------------------------------------CTGCT-----ACAACAACAACAAC----A------------------ACAACAACAACA------GCAGCAACAACAACAA--CTATTG---GCC----A-------ACAA---------------CAACAATCTAGAGGATGATGTTTATTA
droAna3 scaffold_13334:465541-465772 + TTT--CTGCCTC-------------CTCCGGAGAGGCAT-----------C--TCCGA----------------------CTG---CC-----ACCGCCATTGCTCCTGCTGCTGC-------ACCTGCCACGCCCACTGTCACTGTCAGCC-TACTGTCGCGTC----A---GAACAACAACAA------C---AACAACAAT---------------------GGCAATGAGACAAA--------------------------------------------------------------------------------------------------------------------------------------------------G------TAA-------------------------------GCCGCGTTCTCTATTTTC---------------------------------------------------------------------------------------------------------------CAGCAAAAT----A---ATAA--AAAAA----------------AATA---CAAAAACCAT--AAAAAT--TTAGA-A-CATAA--------AAAATA----CTT-TG--AAAA---------------GTATTTTTC
droBip1 scf7180000396641:500532-500733 + CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACAC--------------CACTCTCCAC-TCC-------AC------------------------TCCAATCCACAACA----ACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACT--CT------------GCCA------------------------------------------------------------------------CCTCTCCTAACCA------------------A---------------------------------------------------------------ATG-C---------AGAAAC-----CAA-T--CAAAGC-----------------GAA-CTTGTC
droKik1 scf7180000302808:102461-102662 - CTT--CCGGGATGGAGCTGAGTGCCCTGCGGAAGAGTAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACTC--------------CA-------C-T--CCACACGACA------------------------CCAAC------CAACCCACCCCCAGCATATCTCACTGGAAGC-CTAACACGTAGT-GATTCTCT------------GCCA-------------------------------ACTT--CCC------------------------------------CTCTAACCT------------------A---------------------------------------------------------------ATG-C------AGCAGAATC-----AAA----CAG-----A---------------ACCCTAACT
droFic1 scf7180000453839:1523898-1524155 - CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCAGACAG--------------CTAT---------------AGCCGCC----------------------------------------GCC---TCAGCAGC------------------AGCAGCAGCAGCAACAAC------AACTGCAACAGCAACAGTATCGA-----------------------------------------------------------------------------CAGCCGCCGCAACAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAC-------CGAGCCGGAACATTCTGTACCCGTAAGTACTTAGTAC------------------------------------CCTTCGCCGGAACATAA-AAA------------AA-A---------AATAGAAAAA------ACAACAACAAGAACAAG--AAA--ATACGG---GAA----A-------GAAAAA----GAA-AA--GAAA---------------A--AGTTTT
droEle1 scf7180000491255:2662661-2662879 + CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACAC--------------CA---------A--CCACACCACACCAACCAACCAACCAACCAACCAA----C------CAACCCTCCCCCAGCATCTCCCACTGGAAGA-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------AAG-C---------AGAATC-----AAA-T--CAGAGC-----------------GAAACTATCT
droRho1 scf7180000766945:4267-4493 + CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCACACGG--------------CTAT---------------AGC----------------------------------------------A---G---------CGGCAA------C---AACA---------------------------ACAGCAACAGTATCGACAGCAGC------------------------------------------------------------AGCAGCAA--------------CAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAA-------CGAGCCGGAACATTCTGTACCCGTAAGTACTT---AC------------------------------------CCTTCGC------ATTA-GAA-AAAGTA-----A-ACGA--AAAGA----------------AAAA---CAAGCGCAAG--AAA--ATACGG---GAA----A-------GAAAAA----GAA-AA--GAAA---------------AAGTTTTGC
droBia1 scf7180000298389:156369-156657 - CCT--CTACTATGCCAGCGAGCATTATCCAGGAGGCAAT-----------G--GCAGCA------------------------GTGCGGCCGGCGG----C---------------AAC----------------------CCGGGCTACTACTGACAGCAACACTAAG------------TGAGCAACATT---CGCA------------ACTGC---------AGCAACATCTGCAGCATCAGCAACATCAGC------------------------------------------------------AA-CTC----ATGCAGCTACTG------------------------------------------------------------------------------CAGCCCTTGCAGCT-TTAGCAACTAGC---------------------------------------------------------------A-ACCATTGCTGTTGGACAAG--------------------CAGCCCAGGCTGGGCCAGCGAAAT----A------------------TGTATAAAACAG------AAAAAGAAAAAGGCTT--TAACTA---TGG----A-------GAAAAG----AAA-AA--CAAA---------------AGCTTACAA
droTak1 scf7180000414337:173250-173507 + CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCAGACAG--------------CTGT---------------AGCCGCC----------------------------------------GCA---GCAGCAGC------------------AGCAGCAGCAGCAACAAC------AAC---AGCAGCAACAGTAT-------------------------------------------------------------------------CGC----AAGCAGCAGCAACAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAC-------CGAGCCGGAACATTCTGTACCCGTAAGTACTT--TTC------------------------------------CCTTAGCCAAAGCAAAACAAAAAAAAT----A------------------GAAAAGAAAAAG------GAAAGAAAAAAAGAAA--ATACGG---GAA----A-------GAAAAG----GAA-GA--AAAA---------------AAGTTTTGT
droEug1 scf7180000409456:1119022-1119226 - GTT--TTTC---GAGGCCAATAACTCTGTTGATGGCCAT-----------G--GCTGATG-----------------------CTGCAGCAGCAACACCAACAAC------------------------------------------------------------------------------------------AGCAACGGC---------------------AGCAGCAACACCAACCA-------------GGCCCAGCTGCCAGCAAAGCGCGTTGATGTGTGACAACAACGGCCAATAACTACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CA-A---------AATGCCAAAA------ACAACAAAAAATATTAA--AAAAAA--AGG-AAAA--GCA-----------------------------A---------------CAACAAATT
dm3 chr3L:21623891-21624082 - CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCT
droSim2 3l:21141485-21141676 - CCT--CCGGACTGGAGATGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCT
droSec2 scaffold_11:1544274-1544465 - CCT--CCGGACTGGAGATGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCT
droYak3 X:17638860-17639105 - TGA--CAGCATCAGCGGCAACAAC---------------------------------------------AACAATAACCATCA-TACCGCTGACAA-TGAA---------------AGCG-------------------------------------------GCATCAA---AAGCAACAA---------C---AACA------------ACAATAACAACAACAACAGCAATTGCAATGTCAA----------------------------------------------------------------TG---------AACAACAGCAA----------------CAAC------------------------------------------------------------------------------AAGAAGTGCA------------GCCAATCACACA-------GG----------------------TCAACA-CTCATTAATAAGAAACAAAAACACAAGCCGCATTAGTCAA-------------------AG--------------------------------------------GCAAAATTAA--AGT--GC---ACA-G---------AGAGAA-----AAATT--AGAAAG--A---------------AAAAAATTC
droEre2 scaffold_4784:21279098-21279283 - CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--ACGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------------ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTTACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGA-TC-----AAAAT--CAGAGG-----------------GAACCTATCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTT--CTGCTTTGGAGTTGGGTGCTCTACGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------AACAACAA------CAACAAGAACAAC---------------------AACAACAACAAG------------------------------------------------------------------------TGCCACAC----------------------------------------------------------------------------------------CCACCTCCGCCTACAACT-CTAACCCGTAGTTGATCTACT------------CCTACT-----------------------------ACTTACTA-CTTACT------------------------------TTTT--------------GACTAAAA-AAA---CA-AAA--AAAA------------A----AAAA---GAAAAACCAA--AAAAAA--GAG-AAAA--AAA--------ACAAAA----AAT-TA--CAAA---------------ATTTTATTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCTACAACT-CTAACCCGTAGTT................................................................................................................................................................................................................................................................2511.00110000
................................AGGGCAT-----------G--GCGGGAG-----------------------GTGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACT------------CCTACT-----------------------------ACTTACTA-CTTACT------------------------------............................................................................................................................................................2511.00101000
......................GCTCTACGCAAGGGCAT-----------G--GCGGGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.........................................................................................................ATAAG-------------------------------------------------------------------AACAACAA------CAACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.10220000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CA-AAA--AAAA------------A----AAAA---GA.....................................................................................18200.05100010
..................................................................................................................................................................................ACAACAA------CAACAAGAACAAC---------------------AACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAA---CA-AAA--AAAA------------A----AAAA---.......................................................................................18200.05100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---CA-AAA--AAAA------------A----AAAA---GAAA...................................................................................21200.05100010
droVir3
CGC--CCATAACGCTG----CTGGCCTAAGCAAACGCA---------------GCGGAAA-----------------------C-----------AGTTGCTAATC---------------------------------------------------------------G---AAGCGACAA---------C---AAT---------------------------------------------------------------------------------------------------------------CACAACAA---------------------CAACA-ACA-------AC------------------------A----A------AAACCCACCTAAGGAGCGGGCGGCTGGAGGGAAGGAGGCGTGGCCTAGGGCCT------------TGTA------------------------------------------------------------------------AGTTAATTAACG-------------------AAAGAAGA-G-----AAG------------G----GAAA---AAAAAACAAAAGCAA--AAACAA---AAA----A-------AAAAAC----AAC-AA--GCAA---------------A--AGTCTASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGCGTGGCCTAGGGCCT------------............................................................................................................................................................................................................................................2011.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------AGTTAATTAACG-------------------AAAGAA...........................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................TC---------------------------------------------------------------G---AAGCGACAA---------C---AAT---------------------------------------------------------------------------------------------------------------CACAA...........................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................ACAACAA---------------------CAACA-ACA-------AC------------------------A----A------AA...........................................................................................................................................................................................................................................................................................................21200.102002000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACAAAAGCAA--AAACA.................................................................18150.071001000000000000000000000000000000000000000000000000000000000000
droMoj3
CTT--TCCATTTTCAAATGCTTTTTGCTGGCATTGCAGC------CT---T--CAGTGCT-----------------------AGCCGGCAAGCTGGCCACGGCTGC---------------A----------------------------------------ACA---CCGACAAC------------------AACAACAACAGCAGCAAC------AACTGCTGCAGCAACAG------------------------------------------------------------------------------C----AAACGGCAGCAT----------------CG-----------------------------------------------ACAACGCCAGCAACAACCAGCGACAAC-TTTTCATTTCGTTTTTCACGC------------GGCG------------------------------------------------------------------------CATGCCAA-------------------AAACA-----A-AAAA--AAAAA----------------AAAA---CAAAAAAAAA--AAA--AAATAA---AAA----A-------ATAAAA----AAT-A-------------------------ATAAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------AAACA-----A-AAAA--AAAAA----------------AAAA---CAAAAAAAAA--AAA--AAA...................................................................3633.009090000
.....................................................................................................................................................................A---CCGACAAC------------------AACAACAACAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501100000
...................................................................................................................................................................................................AACAACAACAGCAGCAAC------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102200000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AAAA--AAAAA----------------AAAA---CAAAAA.................................................................................20200.051100000
..........................................................................................................................................................................CGACAAC------------------AACAACAACAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA--AAAAA----------------AAAA---CAAAAAAAAA--...........................................................................22200.051100000
................................................................................................................................................................................C------------------AACAACAACAGCAGCAAC------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
............................................................................................................................................................................ACAAC------------------AACAACAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAA--AAA--AAATAA---AAA----A-------AT............................................19200.051100000
droGri2
CAT--CAGCATTTACAGCAACAAC---------------------------------------------AACATCTGGCGCTG--------------CTGC---------------AGCAACA----------------------------------------GGA---GCAACAGC------------------AGCAGCAGCAACAACAAC------AAC------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAACAACAGCAGCAGCAACA-GCAGCAAGTAGTTAACAT--GGCCATT------GCCACAACGGGCACAAATAATATTC-GACGTAAGTTCAA---AA------------------------------------TCGTCAA------TTCACGAA-AA-------A-------------------------G--------------------T--AAAAAA--AAG-TAAA--ATA--------GTAATA----TAT-TA--AAAT---------------AATTCATATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
............................................................................................................................................................................ACAGC------------------AGCAGCAGCAACAACAAC------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10220
.............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAGCAGCAG...................................................................................................................................................................................................................................................................................21200.05110
............................................................................................................................................................................................................................AC------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAACAACAGCA.......................................................................................................................................................................................................................................................................................21200.05110
dp5
ATGATCCACATTTGAGTTTGAAAGTTCAT---AGGTCAA-----------G--AAAGGAGCTCCCCCGC--------------ATGCAACGGATTCATGCGCAACAAAAG-----------------------------------------------------------G---AGGCAACAA---------C---AAC---------------------------------------------------------------------------------------------------------------AACAACAA--------------AAAA-------AA---CAACA---------------------------------A------AAAA----CTT------------------------------------------------------------------------------------------------------TAGTTCTA------------------------------------------GAACAAAGCAA------ACAAAAAAAA------------ACC--ATAA---AAAAAACTAT--AAAAAA--TGAAA-G---------AAAAAA-----AAACA--AAAAAG--A---------------AAGTTAATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................AAAAG-----------------------------------------------------------G---AGGCAACAA---------C---AAC---------------------------------------------------------------------------------------------------------------AACAACAA--------------..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
...................GAAAGTTCAT---AGGTCAA-----------G--AC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............GTTTGAAAGTTCAT---AGGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
...................................................................................ATGCAACGGATTCATGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAA-----AAACA--AAAAAG--A---------------A........18200.0510010000000
droPer2
CAT--TTGCAATTGTGCAATAA-CTATAT----AATCAACACGACATTCAACAAC--------------AACAGCAA------C---------------------------------------AGTTGCCAAAATAGTTATCATAGTTATCACAGTTATCATAACAACA------------ACAACAACAAT---AACA------------ACAAT---------AACAATAACAACAATAA-----------------------------------------------------------------------------CAACAACAACAATAGC-------AC---CACAAACACC-----------------------------------------------------C--------------------------------------CCACCAAT-------CAAAACAACAACAGCAGCAACCAGCAG-------------------------------------------------CTGCT-----ACAACAACAACAAC----A------------------ACAACAACAACA------GCAGCAACAACAACAA--CTATTG---GCC----A-------ACAA---------------CAACAATCTAGAGGATGATGTTTATTASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................T----AATCAACACGACATTCAACAAC--------------AACAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
................................................CAACAAC--------------AACAGCAA------C---------------------------------------AGTTGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC----A------------------ACAACAACAACA------GCAGCA..................................................................................22200.051001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA------GCAGCAACAACAAC..........................................................................21200.051001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----A------------------ACAACAACAACA------GCAGC...................................................................................19200.051001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAC----A------------------ACAACAACAACA------GC......................................................................................26200.051010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAAC----A------------------ACAACAACAACA------GCAG....................................................................................28200.051010000
.........................................................................................................................................................................................................................................CAACAATAA-----------------------------------------------------------------------------CAACAACAACA...........................................................................................................................................................................................................................................................................................................................................................................20200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAAC----A------------------ACAACA....................................................................................................21200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA------GCAGCAACAACA............................................................................22200.051010000
droAna3
TTT--CTGCCTC-------------CTCCGGAGAGGCAT-----------C--TCCGA----------------------CTG---CC-----ACCGCCATTGCTCCTGCTGCTGC-------ACCTGCCACGCCCACTGTCACTGTCAGCC-TACTGTCGCGTC----A---GAACAACAACAA------C---AACAACAAT---------------------GGCAATGAGACAAA--------------------------------------------------------------------------------------------------------------------------------------------------G------TAA-------------------------------GCCGCGTTCTCTATTTTC---------------------------------------------------------------------------------------------------------------CAGCAAAAT----A---ATAA--AAAAA----------------AATA---CAAAAACCAT--AAAAAT--TTAGA-A-CATAA--------AAAATA----CTT-TG--AAAA---------------GTATTTTTCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................GCAT-----------C--TCCGA----------------------CTG---CC-----ACCGCCATC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...................................................................................................................................................................................CAACAA------C---AACAACAAT---------------------GGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.081010000
....................................................................................................................................................................................AACAA------C---AACAACAAT---------------------GGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
droBip1
CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACAC--------------CACTCTCCAC-TCC-------AC------------------------TCCAATCCACAACA----ACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACT--CT------------GCCA------------------------------------------------------------------------CCTCTCCTAACCA------------------A---------------------------------------------------------------ATG-C---------AGAAAC-----CAA-T--CAAAGC-----------------GAA-CTTGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CTT--CCGGGATGGAGCTGAGTGCCCTGCGGAAGAGTAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACTC--------------CA-------C-T--CCACACGACA------------------------CCAAC------CAACCCACCCCCAGCATATCTCACTGGAAGC-CTAACACGTAGT-GATTCTCT------------GCCA-------------------------------ACTT--CCC------------------------------------CTCTAACCT------------------A---------------------------------------------------------------ATG-C------AGCAGAATC-----AAA----CAG-----A---------------ACCCTAACTSizeHit CountTotal NormTotal
No Reads
droFic1
CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCAGACAG--------------CTAT---------------AGCCGCC----------------------------------------GCC---TCAGCAGC------------------AGCAGCAGCAGCAACAAC------AACTGCAACAGCAACAGTATCGA-----------------------------------------------------------------------------CAGCCGCCGCAACAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAC-------CGAGCCGGAACATTCTGTACCCGTAAGTACTTAGTAC------------------------------------CCTTCGCCGGAACATAA-AAA------------AA-A---------AATAGAAAAA------ACAACAACAAGAACAAG--AAA--ATACGG---GAA----A-------GAAAAA----GAA-AA--GAAA---------------A--AGTTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCACAC--------------CA---------A--CCACACCACACCAACCAACCAACCAACCAACCAA----C------CAACCCTCCCCCAGCATCTCCCACTGGAAGA-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------AAG-C---------AGAATC-----AAA-T--CAGAGC-----------------GAAACTATCTSizeHit CountTotal NormTotal
No Reads
droRho1
CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCACACGG--------------CTAT---------------AGC----------------------------------------------A---G---------CGGCAA------C---AACA---------------------------ACAGCAACAGTATCGACAGCAGC------------------------------------------------------------AGCAGCAA--------------CAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAA-------CGAGCCGGAACATTCTGTACCCGTAAGTACTT---AC------------------------------------CCTTCGC------ATTA-GAA-AAAGTA-----A-ACGA--AAAGA----------------AAAA---CAAGCGCAAG--AAA--ATACGG---GAA----A-------GAAAAA----GAA-AA--GAAA---------------AAGTTTTGCSizeHit CountTotal NormTotal
No Reads
droBia1
CCT--CTACTATGCCAGCGAGCATTATCCAGGAGGCAAT-----------G--GCAGCA------------------------GTGCGGCCGGCGG----C---------------AAC----------------------CCGGGCTACTACTGACAGCAACACTAAG------------TGAGCAACATT---CGCA------------ACTGC---------AGCAACATCTGCAGCATCAGCAACATCAGC------------------------------------------------------AA-CTC----ATGCAGCTACTG------------------------------------------------------------------------------CAGCCCTTGCAGCT-TTAGCAACTAGC---------------------------------------------------------------A-ACCATTGCTGTTGGACAAG--------------------CAGCCCAGGCTGGGCCAGCGAAAT----A------------------TGTATAAAACAG------AAAAAGAAAAAGGCTT--TAACTA---TGG----A-------GAAAAG----AAA-AA--CAAA---------------AGCTTACAASizeHit CountTotal NormTotal
No Reads
droTak1
CAT--CAACATCGGGCTCCACAGC---------------------------------------------AGCGGATCAGACAG--------------CTGT---------------AGCCGCC----------------------------------------GCA---GCAGCAGC------------------AGCAGCAGCAGCAACAAC------AAC---AGCAGCAACAGTAT-------------------------------------------------------------------------CGC----AAGCAGCAGCAACAGA-------AA---CAACAACACT-----------------------------------------------------T--------------------------------------TTGCCAAC-------CGAGCCGGAACATTCTGTACCCGTAAGTACTT--TTC------------------------------------CCTTAGCCAAAGCAAAACAAAAAAAAT----A------------------GAAAAGAAAAAG------GAAAGAAAAAAAGAAA--ATACGG---GAA----A-------GAAAAG----GAA-GA--AAAA---------------AAGTTTTGTSizeHit CountTotal NormTotal
No Reads
droEug1
GTT--TTTC---GAGGCCAATAACTCTGTTGATGGCCAT-----------G--GCTGATG-----------------------CTGCAGCAGCAACACCAACAAC------------------------------------------------------------------------------------------AGCAACGGC---------------------AGCAGCAACACCAACCA-------------GGCCCAGCTGCCAGCAAAGCGCGTTGATGTGTGACAACAACGGCCAATAACTACAAC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA------------CA-A---------AATGCCAAAA------ACAACAAAAAATATTAA--AAAAAA--AGG-AAAA--GCA-----------------------------A---------------CAACAAATTSizeHit CountTotal NormTotal
No Reads
dm3
CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCCACTGGAAGC-CTAACACGTAGT.................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GGAGCTGAGTGCCCTGCGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GACTGGAGCTGAGTGCCCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CT--CCGGACTGGAGCTGAGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CT--CCGGACTGGAGCTGAGTGCCCTGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACC.....2511.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAGCTGAGTGCCCTGCGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
CCT--CCGGACTGGAGCTGAGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................TCCCACTGGAAGC-CTAACACGT....................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----AAACT--CAGAGC-----------------GAACC.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CC..............................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACT--CAGAGC-----------------GAACCTATCT2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--C................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CAT-----------G--GCGGGAG-----------------------GTGCGGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................AAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TGGAGCTGAGTGCCCTGCGCAAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................AT-----------G--GCGGGAG-----------------------GTGCGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CCGGACTGGAGCTGAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CTGGAGCTGAGTGCCCTGCGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................GGGCAT-----------G--GCGGGAG-----------------------GTGCGGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................ACCCCCAGCATCTCCCAC.....................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CT--CCGGACTGGAGCTGAGTGCCCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................ACC-------AC------------------------A----C------CAACCCACCCCC.................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGA................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTGACTCTCT------------GCCT------------------------------------------------------------------------................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTC..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AAGGGCAT-----------G--GCGGGAG-----------------------GTGCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-C---------AGAATC-----AAACT--CAGAGC-----------------G.........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..T--CCGGACTGGAGCTGAGTGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
droSim2
CCT--CCGGACTGGAGATGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACT--CAGAGC-----------------GAACCTATCT2011.00100000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-----AAACT--CAGAGC-----------------GAACA.....1911.00100000001000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------G.........2811.00100000000010000000
...............GATGAGTGCCCTGCGCAAGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACC.....2811.00101000000000000000
...........................................................................................AGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC.............................................................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
CCT--CCGGACTGGAGATGAGTGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
droSec2
CCT--CCGGACTGGAGATGAGTGCCCTGCGCAAGGGCAT-----------G--GCGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------TCCAC-ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTGACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGAATC-----AAACT--CAGAGC-----------------GAACCTATCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAA......................................................................................................................................................2111.0011000
.................................GGGCAT-----------G--GCGGGAG-----------------------GTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
......................................................................................................................................................................................................................................................................................................................................................................................................................CATCTCCCACTGGAAGC-CT...........................................................................................................................................................................................................................................................................1911.0010001
droYak3
TGA--CAGCATCAGCGGCAACAAC---------------------------------------------AACAATAACCATCA-TACCGCTGACAA-TGAA---------------AGCG-------------------------------------------GCATCAA---AAGCAACAA---------C---AACA------------ACAATAACAACAACAACAGCAATTGCAATGTCAA----------------------------------------------------------------TG---------AACAACAGCAA----------------CAAC------------------------------------------------------------------------------AAGAAGTGCA------------GCCAATCACACA-------GG----------------------TCAACA-CTCATTAATAAGAAACAAAAACACAAGCCGCATTAGTCAA-------------------AG--------------------------------------------GCAAAATTAA--AGT--GC---ACA-G---------AGAGAA-----AAATT--AGAAAG--A---------------AAAAAATTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................CAACAGCAA----------------CAAC------------------------------------------------------------------------------AAGAAGT.................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................GAA---------------AGCG-------------------------------------------GCATCAA---AAGCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...........................................................................................................................................................................................................................................GCAATGTCAA----------------------------------------------------------------TG---------AACAACAGC............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
............................................................................................................................................................................................................................................CAATGTCAA----------------------------------------------------------------TG---------AACAACAGC............................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.......................................................................CAATAACCATCA-TACCGCTGAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................AGCAA----------------CAAC------------------------------------------------------------------------------AAGAAGTGCA------------GC................................................................................................................................................................................................................................................2111.00100000010000
droEre2
CCT--CCGGACTGGAGCTGAGTGCCCTGCGCAAGGGCAT-----------G--ACGGGAG-----------------------GTGCGGTAAGTCCGTTTTCATTATAAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCTCCAC---------------------------ACC-------AC------------------------A----C------CAACCCACCCCCAGCATCTCCCACTGGAAGC-CTAACACGTAGTTTACTCTCT------------GCCA------------------------------------------------------------------------CCTCTCCTAACC-------------------A---------------------------------------------------------------ATG-C---------AGA-TC-----AAAAT--CAGAGG-----------------GAACCTATCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................AT-----------G--ACGGGAG-----------------------GTGCGGTAAGTCCGTTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.CT--CCGGACTGGAGCTGAGTGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----AAAAT--CAGAGG-----------------GAACCTATCT2211.0010000100
...........................GCGCAAGGGCAT-----------G--ACGGGAG-----------------------GTGCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
..................GAGTGCCCTGCGCAAGGGCAT-----------G--ACGGGAG-----------------------G.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTTACTCTCT------------GCCA------------------------------------------------------------------------CCT.............................................................................................................................................................2111.0011000000

Generated: 05/17/2015 at 11:12 PM