ID:

dwi_477

 Coordinate:

scf2_1100000004511:962467-962631 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0 -39.9 -39.9

Flybase annnotation

CDS [Dwil\GK17117-cds]; exon [dwil_GLEANR_17442:5]; exon [dwil_GLEANR_17442:4]; CDS [Dwil\GK17117-cds]; intron [Dwil\GK17117-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
GA-richLow_complexityLow_complexity+
mature
star
  1. dwi_477  scf2_1100000004511:962481-962498 +
  2. scf2_1100000004511:7943872-7943889 +
  3. scf2_1100000004511:9165811-9165828 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGTCTATTCGATGAGGAGGCAGCAGCAGCCACAGCAGCAGGATCAGCAGGTACTAACCCACTCAGACAGCAGCAGCAACAGCAACAGCCGCTGCAGCAGCTTCATCACATTCCATGCACTTGCACTGCAGGCGGCGGCAGTGTCGGAGGCGGAGAAGGAGGAGGTATAGGAATAGGAATAGGTGGTGGAAGCGGTGGAGGCGGTGGTGGTGGAGGAGGAGTAGGTGGTGCCACAACTACTAACACACTAACCACCACAGCTAGC
****************************************************************.....((....))....((....((((((.((.((.((...((..(((((((((.(((...((((...(((((....)))))...)))).....)))...)))).)))))..))..)).)).))..))))))....))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 V119
head
................................................................................................................................................................................................CGGTGGAGGCGGTGGTGGGATA................................................... 22 3 12 5.33 64 64 0 0 0
................................................................................................................................................................................................CGGTGGAGGCGCTGGTGGG...................................................... 19 2 13 3.92 51 38 12 0 1
..................................................................................................................................................................................................GTGGAGGCGGTGGTGGTGGAGGAGGA............................................. 26 0 1 3.00 3 0 3 0 0
................................................................................................................................................................................................CGGTGGAGGCGCTGGTGG....................................................... 18 1 8 2.63 21 15 6 0 0
................................................................................................................................................................................................CGGTGGAGGCGTTGGTGGGGTA................................................... 22 3 6 1.17 7 5 2 0 0
........................................................................................................................................................................................GGTGGAAGCGGTGGAGGCGTT............................................................ 21 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................GGTGGAGGCGGTGGTGGTGGAGGA................................................ 24 0 1 1.00 1 0 1 0 0
........................................................................................................................................................................................GGTGGAAGCGGTGGAGGC............................................................... 18 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................................................GAGGCGGTGGTGGTGGAGGAGG.............................................. 22 0 1 1.00 1 0 0 0 1
...................................................................................................................................................................................................TGGAGGCGGTGGTGGTGGAGGAGGAG............................................ 26 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................CGGTGGAGGCGGTGGTGGG...................................................... 19 1 9 0.89 8 8 0 0 0
........................................................................................................................................................................................................................AGGAGTAGGTGTTGCTAC............................... 18 2 7 0.86 6 0 0 6 0
................................................................................................................................................................................................CGGTGGAGGCGTTGGTGGTATA................................................... 22 3 7 0.71 5 5 0 0 0
........................................................................................................................................................................................................................AGGAGTAGGTGTTGCTACA.............................. 19 2 3 0.67 2 0 0 2 0
.......................................................................................................................................................................................CGGTGGAAGCGGTGGAGGCGT............................................................. 21 2 2 0.50 1 1 0 0 0
................................CAGCAGCAGGATCAGCAGG...................................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0
.................................................................................................................................................................................................GGTGGAGGCGTTGGTGGGGTA................................................... 21 3 20 0.45 9 7 2 0 0
................................................................................................................................................................................................CGGTGGAGGCGGTGGTGG....................................................... 18 0 5 0.40 2 2 0 0 0
...........................................................................................................................................................................................GGAAGCGGTGGAGGCGGA............................................................ 18 1 3 0.33 1 0 1 0 0
................................................................AGACAGCAGCAGCAACAG....................................................................................................................................................................................... 18 0 3 0.33 1 0 0 0 1
.............................................................................................................................................................................................................GGTGGTGGAGGAGGAGTA.......................................... 18 0 3 0.33 1 1 0 0 0
.................................................................................................................................................................................................GGTGGAGGCGTTGGTGGT...................................................... 18 1 16 0.31 5 3 2 0 0
................................................................................................................................................................................................CGGTGGAGGCGATGGTGGG...................................................... 19 2 15 0.27 4 4 0 0 0
.........................................................................................................................................................................................................................GGAGTAGGTGTTGCTACA.............................. 18 2 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................................ATGGAGGAGGAGTAGGTGCTG................................... 21 2 4 0.25 1 0 1 0 0
................................................................................................................................................................................................CGGTGGAGGCGTTGGTGGT...................................................... 19 1 5 0.20 1 0 1 0 0
.............................................................................................................................................................................................ATGCGGTGGAGGCGTTGGTGGG...................................................... 22 3 6 0.17 1 1 0 0 0
................................................................................................................................................................................................CGGTGGAGGCGTTGGTGGTA..................................................... 20 2 8 0.13 1 0 1 0 0
.......................................................................................................................................................................................CTGTGGAAGCGGTGGAGG................................................................ 18 2 11 0.09 1 1 0 0 0
.........................................................................................................................................................AGATGGAGGAGGGATCGGAA............................................................................................ 20 3 17 0.06 1 0 1 0 0
...............................................................................................................................................................................................GTGGTGGAGGCGGTGGGGGCGGAGGA................................................ 26 3 17 0.06 1 0 0 0 1
..........................................................................................................................................................GAAGGAGGAAGGATAGGA............................................................................................. 18 2 18 0.06 1 0 1 0 0
..........................................................................................................................................TAGTGCCGGAGGCGGAAAA............................................................................................................ 19 3 19 0.05 1 1 0 0 0
................................................................................................................................................................................................CGGTGGAGGCGTTGGTGGGAG.................................................... 21 3 19 0.05 1 0 1 0 0
....................................................................................................................................................................................AGGTGTTGTAAGCGGTGGAG................................................................. 20 2 20 0.05 1 0 0 0 1
....................................................................................................................................................................................AGGTAAAGGAAGCGGTGGAG................................................................. 20 3 20 0.05 1 0 1 0 0
...................................................................................................................................................AGGCGGGGAGGGAGCAGGT................................................................................................... 19 3 20 0.05 1 1 0 0 0
..........................................................................................................................................................................................................GGTGGTGGTGGAGGAGGAG............................................ 19 0 20 0.05 1 0 0 0 1
.....................AGCAGCAGCCACAGCAGC.................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 0 1 0
................................................................................................................................................................................................CGGTGGAGTCGCTGGTGG....................................................... 18 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

ATCAGATAAGCTACTCCTCCGTCGTCGTCGGTGTCGTCGTCCTAGTCGTCCATGATTGGGTGAGTCTGTCGTCGTCGTTGTCGTTGTCGGCGACGTCGTCGAAGTAGTGTAAGGTACGTGAACGTGACGTCCGCCGCCGTCACAGCCTCCGCCTCTTCCTCCTCCATATCCTTATCCTTATCCACCACCTTCGCCACCTCCGCCACCACCACCTCCTCCTCATCCACCACGGTGTTGATGATTGTGTGATTGGTGGTGTCGATCG
***************************************************************.....((....))....((....((((((.((.((.((...((..(((((((((.(((...((((...(((((....)))))...)))).....)))...)))).)))))..))..)).)).))..))))))....))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 M020
head
 V118
embryo
 V117
male body
...................................................................GTCGTCGTCGTTGTCGTTGTCGG............................................................................................................................................................................... 23 0 6 0.17 1 1 0 0 0
..........................................................................................................................CGTCACGTCCGACGCCGT............................................................................................................................. 18 2 9 0.11 1 0 1 0 0
................................................................................................................................................................................CTTGACCACCAACTTCGCCA..................................................................... 20 3 10 0.10 1 1 0 0 0
.......................................................................TCGTCGTTGTCGTTGTCGG............................................................................................................................................................................... 19 0 12 0.08 1 0 0 1 0
.............CTCCTCCCATGTCGTCGGTG........................................................................................................................................................................................................................................ 20 3 13 0.08 1 1 0 0 0
............................CGGTGACGCTGTCCTAGTCG......................................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 1
..........................................................................................GGACGTCCACGAAGTAGTG............................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:962417-962681 + dwi_477 TAGTCTATTCGAT-----------------------GAGGAGGCAGCAGC---------------------AGC------CA---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---G---ATC---AG---------------------------CA---------------------------------------------GGTACTAAC------CCA----CTCAGAC---AGCAGCA---GC---AACAGCAA---CAGCCGCTGCAGCAGCTTCAT---------------------------------------------------------------------------------CACATT------------------CCA-------------------------------------------------------------------------------------------------------------TGCACTTGCACTGCAG-GCGGCGGCAG-TGT------------------------------CGGAGGCGGAGAAGGAGGAGGTATAG-GAA------------TAGGAATAGGTGGTGGAAG---------------------------------------------------------------------------------------------------------------------------------------CGGTGG----------------------------AGGCGGTGGTGGTGGAGGAGG-------------------AGTAGGTGGTGC----------------------------------------CACAACTACTAACACACTA------ACCACCACAGCT--------AG---C
droVir3 scaffold_13049:8379164-8379392 + TGCTTCCCTCTTTGAGGAG---ACCAACGCAA--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GCAGCAGA--AA---CTA----CTAACAC---AGCATCA---GG---TACT-----------GACCACG------------------CC---CACAACC------------------------------------------------------------AATTAGCCCCGTTTACTAACAC---------------------------GGCTA-ACATTTGCAC-----------------------------------------------------------------------TTGCACGAATCGCGCAG-GAAACGC----------------------------------------------------------------------------------------------------------------------------------------CGCCAG---TTGCAGCAGCAGCAGCA--------------------------------------------GCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------CACCGCTACTAACCCACTA------ATAACCACCGCC--------AG---C
droMoj3 scaffold_6500:24350788-24351039 - TCCAATAC----------------------GG-----AAGCCGGT---GC---------------------AAC------AG---------CTGC-----------------------------------------AGGCGCT------------------------------------------------------------------------------------------------G---C---AGC---AT---------------------------CG---------------------------------------------GGTGCC---------------------------AAG------G---------------------------------------------------------------------CGCCCAGTGGAGCAGGCGGTACGGCAGCAACACGAGTGGGCGCTCAAGGAAATAATGTGCAGACCACCT--GCCCGACGTCTGCTCAAAGTGCGGTGCC----------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACATCC--------------------------------GGGAGTGGGGGA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------TGGCGG----------------------------------CGGCGGCGGTGGTGGTGGAGG-------------TGGTGGTGGTGG----------------------------------------CACCACCTCTGGCACACCA------GGCAGCA---CC--------GT---T
droGri2 scaffold_3013:3837-4055 - GGC---------------------------AG--------------CAGC---------------------AGC------AG---------CAGCAGC-----AGC------------------------------A------------------------------------------------------------------------------------------------------G---CAGCGGC---A---------------------------------------------------------------------------GCAGCA-----GC----------------AGCAGCA------GC---AGCAG------CAGCAGCAGCAGCAGCAGCAGCAGC---------ATC------------AGCAGCGGC---------------------------------------------------------AG-------------------------------------------------CAGCAG------------------CAGCAG-------------------------------------------------------------------------------------------------------CGGCAGC--AGCAG----------------------------CAGCA---------------GCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGG--------------------------------------------------------------------------CA--------------GC----------------------------------------------------------------------------AGCA----G--------CAGCGGCAGCATCAGCAGCAGCAAAAACG---G--CAGCAC-----------------CAA---CAG-CAG---CAGC--------AG---C
dp5 3:11190005-11190336 - CAGGCGGT--------------------------AATATGCAGAT---GC---------------------AAC------AG---------CTCC-----------------------------------------TGCAGCAGCAGCAGTCGGCGGCCGGCGGCAACATGATGTCCACCCAGATGCAGATGTCCAGCATGCACATGACGCAGACCCAGCAGCAGATCACTATGCAGCAG------------------------------------------------------------------------------------------------------------------------CAGCAGCAGTTT-------------------------------------------------------------------------------------------------------------------------GTCCAAAGCACCACCACGA-CCA-------------------------C-GCACCAG---CAGCAGCAGCTGTTGCAGATGCAG------GGTCAGGGCCAG--------------------------------------------------------------------------------------------------------GGAGGCGGTC----------------------------------------------CGGGATCGGC--CAGCAACA----------------------------------------------------------------------------------------ACAACGGAGGTGGCGGTGGCGGCGG----------------------------CGTCGGTGCCGGTGGGGTGGG-------------------AGCGGGTGGTGG----------------------------------------CAACGCATCCAACACGATT------GCCAGCG---CC--------AGCTCG
droPer2 scaffold_21:1446222-1446459 + GC----------------------------AG--------------CAGC---------------------AGC------AC---------CAGCGGC--------------------------------------A------------------------------------------------------------------------------------------------------G---T---GGC---AG---------------------------TG---------------------------------------------GCAGCTCCTCCACCTCAACCTC-------AGCAACA------GC---GACAG------CAGCAGCAGCAGC---------------------AGCGGCAGCGGCATCTGCCACAGC---------------------------------------------------------GG-------------------------------------------------CAACAGCA---------G-----------------------------------CGG-----------------------------------------------------------------------------CTTCAGCGGAG-----------AGTA-------C---AGCGACA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------CGGTGG----------------------------------CGGTGGCAGTGGCAGTGGCAGTGGCAGTAGTA----G------TACAACAGCAACATCTGCCACAGCAGCAGCA---G--CATCAT-----------------CAACAGCAG----CGTCAGC--------GG---T
droAna3 scaffold_13266:7205405-7205665 - TCGGCGT-----------------------GG--------------CAGC---------------------AGC------AG---------CAGCATCAGCTCAACACTAGCAGCAACAGCAGCACC---------A------------------------------------------------------------------------------------------------------A---C---AAC---AT---------------------------CG------------------------------------------GCGGCAGCA-----GC----------------AGCAGCAGCAGCAGCAACA------T---C---AGCAGCA------------------GCAGCAACAACACTCGGAGCAACTGCAGCAGGAGTAACTAGCGATACTGCAGCAGGTCTAGCGGGCGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGAGGGGAAGAGGCAGAG-AAAGGGGAGGAGTAGCA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------AGGAGG----------------------------------AGGAGGTGGAGGAGGCGGCGG-------------AG-----------------------------------------------GAG-----------------GAG---GAG-TTG---CAGC--------AA---C
droBip1 scf7180000396383:32385-32653 - TCGTCATTCCGA---GGATCTGAC------AGCCAAGGAGCA---ACAGC---------------------AAC------AG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AA---------------------------CA---------------------------------------------TC---------------------------AGCAGCAGCA---GC---AACAG------CAGCAGCAACAGAAGCAACATCATCGCC---------------------AGCAACAAC---------------------------------------------------------AA-------------------------------------------------TATCAG------------------CAGGAG-------------------------------------------------------------------------------------------------------CTGCAGC--AGCAA----------------------------CAGGA---------------GCTGCAACAGCAACAGCAGGAGCTGCAGCAGCGT--------------------------------------------------------------------------CA--------------GC----------------------------------------------------------------------------AGCAAATGGAACTGTTGAAGCAGCAGCGTCAGCAGCAGGAGATGCTACTG--CAGCAGCAAC--ATACATCACACTA------T-CAG---CAAC--------AG---C
droKik1 scf7180000302698:506815-507023 - AGGTGGC---------------------------AACGAGCAGCG---G-------------------------------AGCACCAGCAGCCGCAGCAGGCATTCAACATCACCAGCAGCAGCACCAACAGCAGCA------------------------------------------------------------------------------------------------------GCAGC---AGC---AG---------------------------CA-----------------------ACT-------------------TC---------------------------------------------------------------------------------------------------------AGCAACAGC---------------------------------------------------------AA-------------------------------------------------CAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACTCCAGCAACAGCAGCAGCACCACCAGCAACTC--CCTGGCCACATGAGC-ATGCTCAGCA--TGAAGGG----------------------------------------------------TGGAGGCGGAGGAGG-------------------TGGCGCTGGTGG-----------------------------------------------------------------------------------A-------
droFic1 scf7180000454106:590097-590304 + AGCAGTC-----------------------AG-----CAGCAGCA---GC---------------------AAC------AG---------CAGC-----------------------------------------AGCA---------------------------------------------------------------------------------------------------G---C---AGC---A------------------------------------------------------------------------------ACA-----GC----------------AGCAGCA------G----------------AGCAGCAGCAGCAGCAACAACACCGCCAGC---AGCAACAC------------------------------------------------------------CTCCGC------------------CTC-------------------------------------------------------------------------------CGCATCCGCAGCAGCCTCCGCGTCCACATC--CT-----CCAACGGACTGTTCGAG--------------------------------------GGC-------------------AC-----------CGCGCAGGCG-----TACAGCAG---------------------------------------------------------------------------------------------------------------------------------------TGG----------------------------TGCGAGTGGTGCCGGTGGAGGCGG-------------------AGGAGGCGGTG--------------------------------------------------------------------------------------------
droEle1 scf7180000490214:1581889-1582107 + AGT---------------------------AG--------------CAAT---------------------AAC------AA---------CAACA-----------------------------------------------------------------------------------------------------------------------------------------------A---T---AAC---------------------------------------------------------------TCACCGCAAAGCGATGGCAGCA-----AT-------------------------------------------GGC---AACGGCG------------------GCG-------------GTGCTGCAGCACCAGGAGTGCC---------------------------------------ATCCAGTGCACCAC----------------------------------------------CATCAG------------------CTGGAG-------------------------------------------------------------------------------------------------------GAGGAG--GAGGAG----------------------------GAGGA---------------GGCGGAGGAGGATTAGTGGGTG--GTGGCAGCAATAGCAACAGTAGCAGTAATAGCAGCAACAGCAGCAGCACCACTACCA-C-A--CCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGC--------AA---C
droRho1 scf7180000768477:1061-1198 - GC----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------TC-----------------------ACTTCC-------------GCAGCAGCA-----GC----------------AGCAGCAGCAACAGCAGCA------A---CAGCAGCTGCA------------------GC---AGCAACAC-----------------------------------------------------------GGACATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------------CACTGCAGCAACA---GGCGAGCAT-----------------TGGCAGCGG----ACTGGGC--------GG----
droBia1 scf7180000302428:9728639-9728907 + C-----------------------------AG--------CA---ACAGCAACAAGCGACTCAGCAACAGCAACTCTCGAAG---------CAGC-----------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A---------------------------------------------------------------------------GCAGCA-----ACTGCAA----CACAAGC---AGCAGCA---GC---AACAG------CAACAGCAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACCTCGGCGATAATCAGCCCTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAGCCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------
droTak1 scf7180000414670:52266-52581 - C-----------------------------AG--------CA---GCAGC---------------------AAC------AG---------CAGC-----------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AGCAGGTGCAGCAAATACCCAACGGCAAGCAGCAGCCGCAGCAGATGACGATCG------TCACCAC------------------------------------------GCAGCA---GC---AGCAGCAACAGC---AGCAGCA------------------GCAGCATCCCCAGTCGCAGTCGCCGCACC---------------------------------------------------------AG-------------------------------------------------CAGCAGCA---------G-----------------------------------TCG------------------CA-----ACAGCAG-GCCGCCGCAGCTGCCGCCGCTGCAGCCGCAGCCGCCCACCATCA--------------------------------GCAG---------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGCGGTG---GCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGG----TGG-------------------------------------TGC---AGCAGCAGCAGCAGTACCAGATCCA---C--TCGCAG-----------------CAG---CAG-TCG---CCGC--------AG---C
droEug1 scf7180000409466:659084-659329 + GC----------------------------AA--------------CAGC---------------------AACTCTCAAAG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A---------------------------------------------------------------------------GCAGCA-----ACTGCAA----CTCAAGC---AGCA------GCAACAA---------CAGCAACAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACATCGGCGATAATCAGCCGTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAACCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------
dm3 chr2R:9949861-9950025 - C-----------------------------AG--------------CAGC---------------------AAC------AG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AG---------------------------CA---------------------------------------------GCAACA-----AC----------------AGCAGCAGCAGCAACTGCA------A---CAGCAACTGCA------------------GC---AGCAACAG------------------------------------------------------------AT---G-------------------------------------------------------------CTGCA---------G-----------------------------------ATG------------------CA-----CCAGCGG-CTGTCCGGGGGCGCTGGCGCTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTGGGCACCTTGGGA-AGGG-------------------TCCGGATTGTGG---------------------------------------------------------------------G---GGCC--------AT---G
droSim2 2r:18688494-18688619 + C-----------------------------AG--------------CTGC---------------------AGA------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ACC---AC---------------------------CA---------------------------------------------GCAACA-----AC----------------AGCAGCAGCA---CC---AGCA---G---CAGCAGCAGCAGCAGCAACATCATCATCATC---AGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAGCAG-GC-------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------GG-----------------------------------------------CGCT---------------------GGAGTGGGCGGTGG--------------------------------------------CGA-----------------------------------------------------------------------------------A-------
droSec2 scaffold_7:164273-164475 - GC----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AG---------------------------CA------------------------------------------GTTGCAGCA-----GC----------------AGCAACTGCAACAGC---A------T---CAGCAACAGCAGCAGCTGCATCACGGCCACG---AGGAATT------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------AT-----------CAAGCAGGAG---------------TTGGTGGAC--------------------------------------------------------------------------------------------------------------------------T----------------ATTTCCATGGTCAGGCGGCTGCCGGTGGCGGTGGTGGTGG-------------------TGGTGTTGTTGGTCCTGC-----------------------------------ACCGCCGCCAC------------------------CACCCGAATCG---C
droYak3 3L:9003304-9003552 - GA----------------------------AG--------CA---GCAGC---------------------AGC------AG---------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----ACTGCAA----CTCAAGC---AGCAACA---GC---AACAG------CAGCAGCAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACATCGGCGATAATCAGCCGTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAACCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------
droEre2 scaffold_4690:8778847-8779065 + TCTACTCGGGCTT-----------------------CGGGCTGCAGCATC------------------------------AG---------CACCAG--------CACC---------------------------C------------------------------------------------------------------------------------------------------G---C---A---------------------------------------------------------------------------------CCAGCA-----TC----------------AGCATCAGCAGCATCACCA------A---CAGCAGCAGCA------------------GC---AGCAACAG------------------------------------------------------------CTCATG----------------------------------------------------------------------------------------GGATTGGGCCTGGGCA--------------------------------TGG--------GCGGCG---G-CGT------------------------------CGGCGTCGGCGTCGGCGGCGGTGGAG-CAG------------CAGGATCCGCCGGCGGACCA-------------------------------------------------------------------------------------GG-----------------------------------------------TGG-------------------------------------AGGCGCAGGCGGTGG-------------------CGGAGGCGTTGG-------------------------------------------------------------------------CAGCATCGGAA-------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TAGTCTATTCGAT-----------------------GAGGAGGCAGCAGC---------------------AGC------CA---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---G---ATC---AG---------------------------CA---------------------------------------------GGTACTAAC------CCA----CTCAGAC---AGCAGCA---GC---AACAGCAA---CAGCCGCTGCAGCAGCTTCAT---------------------------------------------------------------------------------CACATT------------------CCA-------------------------------------------------------------------------------------------------------------TGCACTTGCACTGCAG-GCGGCGGCAG-TGT------------------------------CGGAGGCGGAGAAGGAGGAGGTATAG-GAA------------TAGGAATAGGTGGTGGAAG---------------------------------------------------------------------------------------------------------------------------------------CGGTGG----------------------------AGGCGGTGGTGGTGGAGGAGG-------------------AGTAGGTGGTGC----------------------------------------CACAACTACTAACACACTA------ACCACCACAGCT--------AG---CSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGG----------------------------AGGCGGTGGTGGTGGAGGAGG-------------------A......................................................................................................2613.00300300
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGG----------------------------AGGCGGTGGTGGTGGAGGA............................................................................................................................2411.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAAG---------------------------------------------------------------------------------------------------------------------------------------CGGTGG----------------------------AGGC...........................................................................................................................................1811.00101000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------------AGGCGGTGGTGGTGGAGGAGG-------------------.......................................................................................................2211.00100001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----------------------------AGGCGGTGGTGGTGGAGGAGG-------------------AG.....................................................................................................2611.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGG----------------------------AGGCGGTGGTGGG..................................................................................................................................1990.89808000
...........................................................................................CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---G---ATC---AG---------------------------CA---------------------------------------------GG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.50100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGG----------------------------AGGCGGTGGTGG...................................................................................................................................1850.40202000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAAG---------------------------------------------------------------------------------------------------------------------------------------CGGTGG----------------------------AGGCGGA........................................................................................................................................1830.33100100
..................................................................................................................................................................................................................................................................................................................................................................AGAC---AGCAGCA---GC---AACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGAGGAGG-------------------AGTA...................................................................................................1830.33101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGTGGAGGAGG-------------------AG.....................................................................................................19200.05100001
............................................AGCAGC---------------------AGC------CA---------CAGCAGC--------------------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
droVir3
TGCTTCCCTCTTTGAGGAG---ACCAACGCAA--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GCAGCAGA--AA---CTA----CTAACAC---AGCATCA---GG---TACT-----------GACCACG------------------CC---CACAACC------------------------------------------------------------AATTAGCCCCGTTTACTAACAC---------------------------GGCTA-ACATTTGCAC-----------------------------------------------------------------------TTGCACGAATCGCGCAG-GAAACGC----------------------------------------------------------------------------------------------------------------------------------------CGCCAG---TTGCAGCAGCAGCAGCA--------------------------------------------GCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------CACCGCTACTAACCCACTA------ATAACCACCGCC--------AG---CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA--------------------------------------------GCAGC.......................................................................................................................................................................................................18200.95190019000000000000000000000000000000000000000000000000000000000000
.................................................................................A---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255004000000000000000000000000001000000000000000000000000000000000
.................................................C---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000000000000000000000000000000000000000002000
.......................................................................AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000000000000000002000000000000000000000000000000000000000000000
.................................................C---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000010000000000000000000000000000000000000000
................................................GC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000001000000000000000000000000000000000000
...............................................AGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000000000000000000001000000000000000000000000000000000000000000
...............................A--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
.............................CAA--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000100000000000000000000000000000000000000000
..............................AA--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000100000000000000000000000000000000000000000
........................................................................AC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051000000000000000000000000000001000000000000000000000000000000000
...............................A--------------CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
.........................................................................C------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000010000000000000000000000000000000000000000000000
.......................................................................AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000100000000000000000000000000000000000000000000
...............................................................................................AAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------CA---------------------------------------------GCAGCAGA--................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000000000100000000000000000000000000
..............................................CAGC---------------------AAC------AA---------CAACAAC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000000000000000000000000000000000001000
droMoj3
TCCAATAC----------------------GG-----AAGCCGGT---GC---------------------AAC------AG---------CTGC-----------------------------------------AGGCGCT------------------------------------------------------------------------------------------------G---C---AGC---AT---------------------------CG---------------------------------------------GGTGCC---------------------------AAG------G---------------------------------------------------------------------CGCCCAGTGGAGCAGGCGGTACGGCAGCAACACGAGTGGGCGCTCAAGGAAATAATGTGCAGACCACCT--GCCCGACGTCTGCTCAAAGTGCGGTGCC----------------------------------------------------------------------------------------------------------------------------------CAGCAGCACGACATCC--------------------------------GGGAGTGGGGGA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------TGGCGG----------------------------------CGGCGGCGGTGGTGGTGGAGG-------------TGGTGGTGGTGG----------------------------------------CACCACCTCTGGCACACCA------GGCAGCA---CC--------GT---TSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGGA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------TGGCGG----------------------------------CGGCGGC..................................................................................................................................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGTGGGGGA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------TGGCGG----------------------------------CG.......................................................................................................................................2211.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGGA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------TGGCGG----------------------------------CGGC.....................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTACGGCAGCAACAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACGAGTGGGCGCTCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACGAGTGGGCGCTCAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTCAAAGTGCGGTGCC----------------------------------------------------------------------------------------------------------------------------------.....................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.......................................................................AAC------AG---------CTGC-----------------------------------------AGGCGCT------------------------------------------------------------------------------------------------G---C---AGC---AT---------------------------CG---------------------------------------------G.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
GGC---------------------------AG--------------CAGC---------------------AGC------AG---------CAGCAGC-----AGC------------------------------A------------------------------------------------------------------------------------------------------G---CAGCGGC---A---------------------------------------------------------------------------GCAGCA-----GC----------------AGCAGCA------GC---AGCAG------CAGCAGCAGCAGCAGCAGCAGCAGC---------ATC------------AGCAGCGGC---------------------------------------------------------AG-------------------------------------------------CAGCAG------------------CAGCAG-------------------------------------------------------------------------------------------------------CGGCAGC--AGCAG----------------------------CAGCA---------------GCAGCGGCAGCAGCAGCAGCAGCAGCAGCAGCGG--------------------------------------------------------------------------CA--------------GC----------------------------------------------------------------------------AGCA----G--------CAGCGGCAGCATCAGCAGCAGCAAAAACG---G--CAGCAC-----------------CAA---CAG-CAG---CAGC--------AG---CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGC---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.25550
.........................................................................................................................................................................................................................................................................................................................................................................AGCA------GC---AGCAG------CAGCAGCAGCAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.10220
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--CAGCAC-----------------CAA---CAG-CAG---CAGC--------A.....21200.05110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------AG-------------------------------------------------CAGCAG------------------CAGCAG-------------------------------------------------------------------------------------------------------CGGCA................................................................................................................................................................................................................................................................................................................................................................................20200.05101
dp5
CAGGCGGT--------------------------AATATGCAGAT---GC---------------------AAC------AG---------CTCC-----------------------------------------TGCAGCAGCAGCAGTCGGCGGCCGGCGGCAACATGATGTCCACCCAGATGCAGATGTCCAGCATGCACATGACGCAGACCCAGCAGCAGATCACTATGCAGCAG------------------------------------------------------------------------------------------------------------------------CAGCAGCAGTTT-------------------------------------------------------------------------------------------------------------------------GTCCAAAGCACCACCACGA-CCA-------------------------C-GCACCAG---CAGCAGCAGCTGTTGCAGATGCAG------GGTCAGGGCCAG--------------------------------------------------------------------------------------------------------GGAGGCGGTC----------------------------------------------CGGGATCGGC--CAGCAACA----------------------------------------------------------------------------------------ACAACGGAGGTGGCGGTGGCGGCGG----------------------------CGTCGGTGCCGGTGGGGTGGG-------------------AGCGGGTGGTGG----------------------------------------CAACGCATCCAACACGATT------GCCAGCG---CC--------AGCTCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................TGACGCAGACCCAGCAGCAGATCACTAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCAGGGCCAG--------------------------------------------------------------------------------------------------------GGAGGCG.................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATT------GCCAGCG---CC--------AGC...1811.0010000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGATGCAG------GGTCAGGGCCAG--------------------------------------------------------------------------------------------------------GGAGG...................................................................................................................................................................................................................................................................................................................................................................2711.0010000100000
...............................................................................................................................................GCAGCAGTCGGCGGCCGGCGGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTGGG-------------------AGCGGGTGGTGG----------------------------------------...................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGGTGGG-------------------AGCGGGTGGTGG----------------------------------------CAA................................................2511.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGTGGG-------------------AGCGGGTGGC.............................................................................................1920.5010000001000
droPer2
GC----------------------------AG--------------CAGC---------------------AGC------AC---------CAGCGGC--------------------------------------A------------------------------------------------------------------------------------------------------G---T---GGC---AG---------------------------TG---------------------------------------------GCAGCTCCTCCACCTCAACCTC-------AGCAACA------GC---GACAG------CAGCAGCAGCAGC---------------------AGCGGCAGCGGCATCTGCCACAGC---------------------------------------------------------GG-------------------------------------------------CAACAGCA---------G-----------------------------------CGG-----------------------------------------------------------------------------CTTCAGCGGAG-----------AGTA-------C---AGCGACA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------CGGTGG----------------------------------CGGTGGCAGTGGCAGTGGCAGTGGCAGTAGTA----G------TACAACAGCAACATCTGCCACAGCAGCAGCA---G--CATCAT-----------------CAACAGCAG----CGTCAGC--------GG---TSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................ACCTC-------AGCAACA------GC---GACAG------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTAGTA----G------TACAACAGC.....................................................................................1911.001010000
GC----------------------------AG--------------CAGC---------------------AGC------AC---------CAGCGGC--------------------------------------A------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.402000002
...........................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAGCAGCAGC---------------------AGCGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
........................................................................................................................................................................................................................................................................................................................................................................CAACA------GC---GACAG------CAGCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................CA------GC---GACAG------CAGCAGCAGCAGC---------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
droAna3
TCGGCGT-----------------------GG--------------CAGC---------------------AGC------AG---------CAGCATCAGCTCAACACTAGCAGCAACAGCAGCACC---------A------------------------------------------------------------------------------------------------------A---C---AAC---AT---------------------------CG------------------------------------------GCGGCAGCA-----GC----------------AGCAGCAGCAGCAGCAACA------T---C---AGCAGCA------------------GCAGCAACAACACTCGGAGCAACTGCAGCAGGAGTAACTAGCGATACTGCAGCAGGTCTAGCGGGCGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGAGGGGAAGAGGCAGAG-AAAGGGGAGGAGTAGCA-------------------------------------------------------------------------------------------------------GG-----------------------------------------------AGGAGG----------------------------------AGGAGGTGGAGGAGGCGGCGG-------------AG-----------------------------------------------GAG-----------------GAG---GAG-TTG---CAGC--------AA---CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.CGGCGT-----------------------GG--------------CAGC---------------------AGC------AG---------CAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGCGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGAGG........................................................................................................................................................................................................................................................................................................................................................................1811.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGGCGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAGGGAGGG.......................................................................................................................................................................................................................................................................................................................................................................1911.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCGGCGG-------------AG-----------------------------------------------GAG-----------------GAG---G...........................1940.502000002
..............................................................................................................GCAGCAACAGCAGCACC---------A------------------------------------------------------------------------------------------------------A---C---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.331010000
.....................................................................................................................................................................................................................................................................................................................................................C----------------AGCAGCAGCAGCAGCAACA------T---C---AGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2850.201000001
.......................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA------T---C---AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2490.111100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------AGGAGG----------------------------------AGGAGGTGGAGGAG...........................................................................................................................2190.111000001
...................................................................................................................................................................................................................................................................................................................................................................................GCAACA------T---C---AGCAGCA------------------GCAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24110.091000100
..........................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAACA------T---C---AGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22160.061100000
................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------T---C---AGCAGCA------------------GCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23180.061010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------------------------------------------AGGAGG----------------------------------AGGAGGTGGAGG.............................................................................................................................19190.051100000
.......................................................................................................................................................................................................................................................................................................................................CGGCAGCA-----GC----------------AGCAGCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................GCAACA------T---C---AGCAGCA------------------GCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000010
droBip1
TCGTCATTCCGA---GGATCTGAC------AGCCAAGGAGCA---ACAGC---------------------AAC------AG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AA---------------------------CA---------------------------------------------TC---------------------------AGCAGCAGCA---GC---AACAG------CAGCAGCAACAGAAGCAACATCATCGCC---------------------AGCAACAAC---------------------------------------------------------AA-------------------------------------------------TATCAG------------------CAGGAG-------------------------------------------------------------------------------------------------------CTGCAGC--AGCAA----------------------------CAGGA---------------GCTGCAACAGCAACAGCAGGAGCTGCAGCAGCGT--------------------------------------------------------------------------CA--------------GC----------------------------------------------------------------------------AGCAAATGGAACTGTTGAAGCAGCAGCGTCAGCAGCAGGAGATGCTACTG--CAGCAGCAAC--ATACATCACACTA------T-CAG---CAAC--------AG---CSizeHit CountTotal NormTotal
No Reads
droKik1
AGGTGGC---------------------------AACGAGCAGCG---G-------------------------------AGCACCAGCAGCCGCAGCAGGCATTCAACATCACCAGCAGCAGCACCAACAGCAGCA------------------------------------------------------------------------------------------------------GCAGC---AGC---AG---------------------------CA-----------------------ACT-------------------TC---------------------------------------------------------------------------------------------------------AGCAACAGC---------------------------------------------------------AA-------------------------------------------------CAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACTCCAGCAACAGCAGCAGCACCACCAGCAACTC--CCTGGCCACATGAGC-ATGCTCAGCA--TGAAGGG----------------------------------------------------TGGAGGCGGAGGAGG-------------------TGGCGCTGGTGG-----------------------------------------------------------------------------------A-------SizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGTC-----------------------AG-----CAGCAGCA---GC---------------------AAC------AG---------CAGC-----------------------------------------AGCA---------------------------------------------------------------------------------------------------G---C---AGC---A------------------------------------------------------------------------------ACA-----GC----------------AGCAGCA------G----------------AGCAGCAGCAGCAGCAACAACACCGCCAGC---AGCAACAC------------------------------------------------------------CTCCGC------------------CTC-------------------------------------------------------------------------------CGCATCCGCAGCAGCCTCCGCGTCCACATC--CT-----CCAACGGACTGTTCGAG--------------------------------------GGC-------------------AC-----------CGCGCAGGCG-----TACAGCAG---------------------------------------------------------------------------------------------------------------------------------------TGG----------------------------TGCGAGTGGTGCCGGTGGAGGCGG-------------------AGGAGGCGGTG--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AGT---------------------------AG--------------CAAT---------------------AAC------AA---------CAACA-----------------------------------------------------------------------------------------------------------------------------------------------A---T---AAC---------------------------------------------------------------TCACCGCAAAGCGATGGCAGCA-----AT-------------------------------------------GGC---AACGGCG------------------GCG-------------GTGCTGCAGCACCAGGAGTGCC---------------------------------------ATCCAGTGCACCAC----------------------------------------------CATCAG------------------CTGGAG-------------------------------------------------------------------------------------------------------GAGGAG--GAGGAG----------------------------GAGGA---------------GGCGGAGGAGGATTAGTGGGTG--GTGGCAGCAATAGCAACAGTAGCAGTAATAGCAGCAACAGCAGCAGCACCACTACCA-C-A--CCCGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGC--------AA---CSizeHit CountTotal NormTotal
No Reads
droRho1
GC----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AG---------------------------TC-----------------------ACTTCC-------------GCAGCAGCA-----GC----------------AGCAGCAGCAACAGCAGCA------A---CAGCAGCTGCA------------------GC---AGCAACAC-----------------------------------------------------------GGACATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC-------------------------------------------------------------------------------------------------------------------------------------------------CACTGCAGCAACA---GGCGAGCAT-----------------TGGCAGCGG----ACTGGGC--------GG----SizeHit CountTotal NormTotal
No Reads
droBia1
C-----------------------------AG--------CA---ACAGCAACAAGCGACTCAGCAACAGCAACTCTCGAAG---------CAGC-----------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A---------------------------------------------------------------------------GCAGCA-----ACTGCAA----CACAAGC---AGCAGCA---GC---AACAG------CAACAGCAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACCTCGGCGATAATCAGCCCTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAGCCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
C-----------------------------AG--------CA---GCAGC---------------------AAC------AG---------CAGC-----------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---AGCAGGTGCAGCAAATACCCAACGGCAAGCAGCAGCCGCAGCAGATGACGATCG------TCACCAC------------------------------------------GCAGCA---GC---AGCAGCAACAGC---AGCAGCA------------------GCAGCATCCCCAGTCGCAGTCGCCGCACC---------------------------------------------------------AG-------------------------------------------------CAGCAGCA---------G-----------------------------------TCG------------------CA-----ACAGCAG-GCCGCCGCAGCTGCCGCCGCTGCAGCCGCAGCCGCCCACCATCA--------------------------------GCAG---------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGGCGGTG---GCCGCCGCCGTCTGTGCCGCCCAGCAGCAGGCGGTGG----TGG-------------------------------------TGC---AGCAGCAGCAGCAGTACCAGATCCA---C--TCGCAG-----------------CAG---CAG-TCG---CCGC--------AG---CSizeHit CountTotal NormTotal
No Reads
droEug1
GC----------------------------AA--------------CAGC---------------------AACTCTCAAAG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---AGC---A---------------------------------------------------------------------------GCAGCA-----ACTGCAA----CTCAAGC---AGCA------GCAACAA---------CAGCAACAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACATCGGCGATAATCAGCCGTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAACCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
C-----------------------------AG--------------CAGC---------------------AAC------AG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AG---------------------------CA---------------------------------------------GCAACA-----AC----------------AGCAGCAGCAGCAACTGCA------A---CAGCAACTGCA------------------GC---AGCAACAG------------------------------------------------------------AT---G-------------------------------------------------------------CTGCA---------G-----------------------------------ATG------------------CA-----CCAGCGG-CTGTCCGGGGGCGCTGGCGCTGGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGGTGGGCACCTTGGGA-AGGG-------------------TCCGGATTGTGG---------------------------------------------------------------------G---GGCC--------AT---GSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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droSim2
C-----------------------------AG--------------CTGC---------------------AGA------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ACC---AC---------------------------CA---------------------------------------------GCAACA-----AC----------------AGCAGCAGCA---CC---AGCA---G---CAGCAGCAGCAGCAGCAACATCATCATCATC---AGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACAGCAG-GC-------------------------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------GG-----------------------------------------------CGCT---------------------GGAGTGGGCGGTGG--------------------------------------------CGA-----------------------------------------------------------------------------------A-------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................A---CC---AGCA---G---CAGCAGCAGCAGCAGCAACAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2920.50100010000000000000
..............................................................................................................................................................................................................................................................................................................................................................................CA---CC---AGCA---G---CAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16200.15300000000003000000
.............................................................................................................................................................................................................................................................................................................................................CA-----AC----------------AGCAGCAGCA---CC---AGCA---G---CAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2470.14100000000000100000
...........................................................................................................................................................................................................................................................................................A---------------------------------------------GCAACA-----AC----------------AGCAGCAGCA---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................AGCA---CC---AGCA---G---CAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000000001000000
droSec2
GC----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---ATC---AG---------------------------CA------------------------------------------GTTGCAGCA-----GC----------------AGCAACTGCAACAGC---A------T---CAGCAACAGCAGCAGCTGCATCACGGCCACG---AGGAATT------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------AT-----------CAAGCAGGAG---------------TTGGTGGAC--------------------------------------------------------------------------------------------------------------------------T----------------ATTTCCATGGTCAGGCGGCTGCCGGTGGCGGTGGTGGTGG-------------------TGGTGTTGTTGGTCCTGC-----------------------------------ACCGCCGCCAC------------------------CACCCGAATCG---CSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................ATC---AG---------------------------CA------------------------------------------GTTGCAGCA-----GC----------------AGCAACT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTGGTCCTGC-----------------------------------ACCGC.............................................1911.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCACG---AGGAATT------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------AT-----------CA.............................................................................................................................................................................................................................................................................................................................................2311.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................AATT------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------AT-----------CAAGCAGG.......................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGGTCAGGCGGCTGCCG..........................................................................................................................................2111.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGCCGGTGGCGGTGGT...............................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAC-------------------AT-----------CAAGCAGGAG---------------TTGGT.................................................................................................................................................................................................................................................................................................................2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGGTGGCGGTGGTGGTGG-------------------TGGT...................................................................................................2711.0010010
..............................................................................................................................................................................................................................................................................................................................................................................CAACAGC---A------T---CAGCAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.5010010
GC----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24150.0710010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCGGTGGTGGTGG-------------------TGG....................................................................................................19160.0610010
.C----------------------------AG--------------CAGC---------------------AAC------TG---------CAGCAGC--------------------------------------A------------------------------------------------------------------------------------------------------G---C---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510010
droYak3
GA----------------------------AG--------CA---GCAGC---------------------AGC------AG---------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----ACTGCAA----CTCAAGC---AGCAACA---GC---AACAG------CAGCAGCAGCA------------------GC---AGCAACA------------------------------------------------------------GGACATCCTGTATCAGCAACAT---------------------------AACGAGGCAATTGCAA-----------------------------------------------------------------------TTGCACGCGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-A--CCTGCCGACATCGGCGATAATCAGCCGTACTACGATACAAGCGGTA----------------ATGTCGATTGGGAGCGGGCGATGGGAACCGGTGGAGCTGG-------------------TGCATATGGTGG-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACTGCAG-GCTGCAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C-T--................................................................................................................................................................................................................................1920.50110000000000
...............................................................................................A-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20401000030000
.............................................GCAGC---------------------AGC------AG---------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000000000
.............................................................................................GCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23160.06101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------------GC---AGCAACA------------------------------------------------------------GG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21180.06101000000000
........................................................................GC------AG---------CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010000000
....................................................................................................................................................................................................................................................................................................................................................................GC---AGCAACA---GC---AACAG------CAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................................AACA---GC---AACAG------CAGCAGCAGCA------------------GC---AG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAACA---GC---AACAG------CAGCAGCAGCA------------------GC---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
..........................................................................................................................................................................................................................................................................................................................................................................GCAACA---GC---AACAG------CAGCAGCAGCA------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.............................................................................................GCA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................ACAG------CAGCAGCAGCA------------------GC---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000
.............................................................................................................................................................................................................................................................................................................................................................................ACA---GC---AACAG------CAGCAGCAGCA------------------GC---A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
...................................................................................................................................................................................................................................................C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----AC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
..............................................................................................CA-----------------------------------------------------------------------------------------------------------------------------------------------G---C---AACATCAG---------------------------CA---------------------------------------------GCAGCA-----A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
droEre2
TCTACTCGGGCTT-----------------------CGGGCTGCAGCATC------------------------------AG---------CACCAG--------CACC---------------------------C------------------------------------------------------------------------------------------------------G---C---A---------------------------------------------------------------------------------CCAGCA-----TC----------------AGCATCAGCAGCATCACCA------A---CAGCAGCAGCA------------------GC---AGCAACAG------------------------------------------------------------CTCATG----------------------------------------------------------------------------------------GGATTGGGCCTGGGCA--------------------------------TGG--------GCGGCG---G-CGT------------------------------CGGCGTCGGCGTCGGCGGCGGTGGAG-CAG------------CAGGATCCGCCGGCGGACCA-------------------------------------------------------------------------------------GG-----------------------------------------------TGG-------------------------------------AGGCGCAGGCGGTGG-------------------CGGAGGCGTTGG-------------------------------------------------------------------------CAGCATCGGAA-------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------------------------------------------------------------CTCATG----------------------------------------------------------------------------------------GGATTGGGCCTGGGCA--------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................A------A---CAGCAGCAGCA------------------GC---AGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.2040004000
..........................................................................................................................................................................................................................................................................................................................................CAGCA-----TC----------------AGCATCAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20190.0511000000

Generated: 05/17/2015 at 11:12 PM