ID:

dwi_466

 Coordinate:

scf2_1100000004511:749393-749558 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.5

Flybase annnotation

CDS [Dwil\GK17076-cds]; exon [dwil_GLEANR_17405:7]; CDS [Dwil\GK17076-cds]; exon [dwil_GLEANR_17405:6]; intron [Dwil\GK17076-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey-
mature
star
  1. scf2_1100000003252:5048-5068 -
  2. scf2_1100000003720:17055-17075 -
  3. dwi_466  scf2_1100000004511:749393-749413 -
  4. scf2_1100000004511:4731303-4731323 -
  5. scf2_1100000004558:2095155-2095175 -
  6. scf2_1100000004577:126726-126746 -
  7. scf2_1100000004577:127626-127646 -
  8. scf2_1100000004585:4709960-4709980 -
  9. scf2_1100000004729:2575230-2575250 -
  10. scf2_1100000004768:1967509-1967529 -
  11. scf2_1100000004768:1967590-1967610 -
  12. scf2_1100000004888:1010022-1010042 -
  13. scf2_1100000004943:1418879-1418899 -
  14. scf2_1100000004943:1418900-1418920 -
  15. scf2_1100000004943:16096776-16096796 -
  16. scf2_1100000004902:965607-965627 -
  17. scf2_1100000004902:2075392-2075412 -
  18. scf2_1100000004909:1223099-1223119 -
  19. scf2_1100000004921:391743-391763 -
  20. scf2_1100000004963:4157318-4157338 -

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGCAAATTCAGCATTGCGTGCTCAGCTCAATTCCAATGTGCCAATTCTGGTAAGTCAAAATGAAGTTGTATTTATACTCCAAACTGTTCTCACTCTCGTTGTCTCTTTCCTCTCCCTCTATTTGTCTTTCTTTCTGTTAGCAATCACAGCTGAAGTCTCAGCAACAACATCAACATCAACAATTGTTGCAGAAGCAGCAGCAACAACAACAACAGCAACAACAGACAACTGCCAGCAGTAATAATAATAATAATAACAATAACAA
**********************************************************************************************************************************************.......((((..((.((.(((((((...............))))))).)).))..))))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V119
head
 M020
head
 M045
female body
..............................................................................................................................................AATCACAGCTGAAGTCTCA......................................................................................................... 19 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................................TGTTGCAGAAGATGCAGCA............................................................... 19 2 6 0.17 1 0 1 0 0
....................................................................................................................................................................ACAACATCAACATCAACA.................................................................................... 18 0 13 0.08 1 1 0 0 0
..................................................................................................................................................ACAACTGAAGGCTCATCAAC.................................................................................................... 20 3 18 0.06 1 0 0 1 0
.......................................................................................................................................................................................................AGCAACAACAACAACAGC................................................. 18 0 20 0.05 1 0 0 1 0
..........................................................................................................................................................................................................AACAACAACAACAGCAACAACAG......................................... 23 0 20 0.05 1 0 0 0 1
.............................................................................................................................................CAATCACCACTGAAGTCTG.......................................................................................................... 19 3 20 0.05 1 0 0 1 0
...................................................................................................................................................................................................CAGCAGCAACAACAACAACAG.................................................. 21 0 20 0.05 1 0 1 0 0

Anti-sense strand reads

TGCGTTTAAGTCGTAACGCACGAGTCGAGTTAAGGTTACACGGTTAAGACCATTCAGTTTTACTTCAACATAAATATGAGGTTTGACAAGAGTGAGAGCAACAGAGAAAGGAGAGGGAGATAAACAGAAAGAAAGACAATCGTTAGTGTCGACTTCAGAGTCGTTGTTGTAGTTGTAGTTGTTAACAACGTCTTCGTCGTCGTTGTTGTTGTTGTCGTTGTTGTCTGTTGACGGTCGTCATTATTATTATTATTATTGTTATTGTT
**************************************************.......((((..((.((.(((((((...............))))))).)).))..))))..............********************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
.............................................................................................................................................................................TGTAGTTGTTAACACGGTC.......................................................................... 19 2 5 0.20 1 1 0 0
...............................................................................................................................................................GTCGTTGTTGTAGTTGTAGT....................................................................................... 20 0 7 0.14 1 0 1 0
...................................................................................................................................................................TGGTCGTAGTTGAAGTTGTTAAC................................................................................ 23 3 8 0.13 1 1 0 0
..................................................................................................................................................TGTCGACTTCAGAGGCCAT..................................................................................................... 19 3 11 0.09 1 1 0 0
...............................TAGGTTACCCGGTCAAGACC....................................................................................................................................................................................................................... 20 3 13 0.08 1 1 0 0
................................................................................................AGCTAAAGAGAAAGGAGAG....................................................................................................................................................... 19 2 20 0.05 1 0 0 1
.....................................................................................................................................................................................................CGTCGTTGTTGTTGTTGTCGTTGT............................................. 24 0 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004511:749343-749608 - dwi_466 ACGCAAA---T---------------------------TC--A---GCATTGCGTGCTCAGC--TCAATTCCAATGTGCCAATTCTGGTAA-------------------------------------------------------------GTCAAA-ATG------------------A------------------------------------------------------------------------------------------AGTTGTATT-TATACTCCAAA----CTGTTCTCACT------------------------------------------------CT-------------------CGTTGTCTCTTTCCTCTCCCTCTATTTGTC--TTT------------------CTTTCTG---T------------------------------------------------------------------------TAGCAATCACAGCTGAAGTCTCAGCAA----------------------------CAACAT-CAAC------AT------CAACAATTGT-----TGC---AGAAGCAGCAGCAACAAC---AAC-----------AAC---------AG--------------CAACA--ACAGAC--AACTGCCA---G------------------------------CAGTAAT---AATAATAATAATAACAA-TAACAA
droVir3 scaffold_13049:17614512-17614783 + dvi_20299 TGC-CAA---T---------------------------TC--C---GCGTTGCGTGCCCAGC--TGAACTCCAATGTGCCAATTCTCGTAA--------------GTATTTTCAGTGTGAGCCATTTTACATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGTGT---CTGG-----------CTGATCAGA----------------------------CAGTGCTTTACGGTTCAGGGTCGTCAATACTTTACTCATATTCTAT---------T--------CCAT------TTTGCTT---T------------------------------------------------------------------------TAGCAATCACAACTGAAGGCTTCGCCGATTGTT----------------------------------------G------CCACACATCAATCACTGC---AGAAGCAACAACAG-----------------------C---------AG--------------CAGCA--ACAAAT--AACTGCCA---C------------------------------AAATA------------ACAATACCCT-CAGCAA
droMoj3 scaffold_6540:31490147-31490395 - ACG--GC---T---------------------------AC--G---GCA--------TCAGC--CGAGTAGAAATACGCGAAATTCTTT--------TG------------------------------------------------------------------------------------------------------------------------------CCTTGAACTCGAAGAGGCTGTAATCT--------------------------------------GAT---------TTTATTATAATTTTGATTTTGC--T-----------T-----------------TCTTT-----------------------------------------------------TC-----------ATAA-ATTTT---ATAAC---A---AACTCGCAGCGGGGCAGCCGCACGCACCCACGCCC-ACAGCC--------------------ACCGAGAAAAACTGAAGGGG-----------------------------------------------AAGCAA------GAAAAAACAA-----TGC---AAAGCAAA-----------------------------------------------------------------AAC--CACCGCCA---A------------------------------TAATAAT---AATAATCATAATAACAG-AAACAA
droGri2 scaffold_14853:8397944-8398207 + CGC-ATA---T-------------------------------AGCAGCAATGTGGGTGCAACACTCGACAATACGATGCTGATGCTGCCAACAG-----------------------------------------------------------CAGCAACGG------------------------------------------------------------------------------------------GAATGCATAAG--GTTGCA-------AC------------AGCAATGT---CACC-----------GCTCTTGT-----------T-----------------GCTGC-----------------------------------------------------CC-----------A--AT-GGTTATGC---GAGTCAACATGGCGGAATGTTGT--------------------------------------------------------------------CACCGCCTGCA------------GC---AATATCAACAC-CACCACCAACAA------CAACAGCTGC-----AGC---AGCAGCAACTGCCA---------C-----------AAC---------AG--------------CTACT--ACAA-CAAC------AGCAG------------------------------CTGGAAT------ATCAACAACAGCAACAAACAA
dp5 XR_group8:6933756-6933981 - C---CAA---C---------------------------TC--T---GCTCTGCGTGCCCAGC--TGAACTCCAATGTGCCAATTCTGGTGA-------------------------------------------------------------GTAATAAATG------------------------------------------------------------------------------------------CAATGTGCAAAGGATTTCA-------TT---------GA-------------------CTCT-------CA--C-----------T-----------------CTTTT-----------------------------------------------------CT-----------ATCCATTCCG---A------------------------------------------------------------------------CAGCAATCGCAGCTGAAGGCTCAGCAG-CTAATGCAAAAGCAGCAGC----------------------------AACAGCAGCAGC--------------ATCAGC---AGCAGCAAC---AGC-----------AGC---------AG--------------CAACA--ACAGAC--AACTGCCT---C------------------------------CAGTAA------------------TAA-CAATAA
droPer2 scaffold_36:373876-374112 + G------------------------------------------------------------C--TGAACTCCAATGTGCCAATTCTGGTGA-------------------------------------------------------------GTAATAAATG------------------------------------------------------------------------------------------CAATGTGCAAAGGATTTCA-------TT---------GA-------------------CTCT-------CA--C-----------T-----------------CTCTC-----------------------------------------------------CT-----------ATCCATTCCG---A------------------------------------------------------------------------CAGCAATCGCAGCTGAAGGCTCAGCAG-CTAATGCAAAAGCAGCAGC------------AA-------CAGCAG---CAGCAGCAGC--------ATCAGCAGCAGC---AGCAACAGCAG---C-----------AGCAGCAGCAACAG--------------CAACA--ACAGAC--AACTGCCT---C------------------------------CAGTAAT------AACAATAACAACAA-TAACAG
droAna3 scaffold_13337:21933885-21934076 - GC--CAA---C---------------------------TC--C---GCATTGCGTGCCCAGC--TGAACTCCAATGTGCCAATCCTGGTAA-------------------------------------------------------------GGT----------------------------------------------------------------------------------------TGAGATCTTCAGAGCGCC----------AGTCATATGTTA------TG-------------------C--------------------------------------------TTGTGCT----------------------------------------------TTT------------------TTTTGTC---A------------------------------------------------------------------------CAGCAATCGCACCTCAAAGTT-----------------------------------------------CAACAG------CAGCAACTCA-----TAC---AGAAGCAGCACCAGC--------------------ATC---------AA--------------CAGCA--ACAGAC--AACTGCCA---C----------------------------------------------------------TAACAA
droBip1 scf7180000396730:405697-405887 - TC--CAA---T---------------------------TC--C---GCATTGCGTGCCCAAC--TCAACTCCAATGTGCCAATCCTGGTAA-------------------------------------------------------------GGC----------------------------------------------------------------------------------------TGAGATCTCCAGAGTGCA----------AGTCATATGTTA------TG-------------------G--------------------------------------------TTGTGCG-----------------------------------------------TC------------------TTTTCCC---G------------------------------------------------------------------------TAGCAATCGCAGCTCAAAGTT-----------------------------------------------CAACAG------CAGCAGCTTA-----TTC---AGAAGCAACACCAGC--------------------ATC---------AG--------------CAACA--ACAGAC--AACTGCCA---C----------------------------------------------------------TAACAA
droKik1 scf7180000302808:509691-509896 - AGC-GAA---T---------------------------TC--C---GCATTGCGTGCCCAGC--TCAACTCTAGCGGGCCAATTCTGGTAG-------------------------------------------------------------GAC----------------------------------------------------------------------------------------CACGACCTTG-ATATGCA----------AGACTTGTTTAC------TA-------------------A--------------------------------------------TTATATT----------------------------------------------ATC------------------CTGTTTT---T------------------------------------------------------------------------TAGCAATCGCAGCTGAAAGTT-----------------------------------------------CAGCAGCCGCAGCAGCAGATCA-----TGC---CGAAGCAACAT----------------------------------------------------CAGCA--ACAGAC--AACTGCCA---C------------------------------TAGCAAC---------ACCAACAATAA-T-ACAA
droFic1 scf7180000454076:102835-103126 + ACA--GAGCAATCCGCAAATGAATCCTGCATATCAGTTCCAG--CAACAACAGCCGCCCGGC--CAAACCAAAATGA----ATGCC-----------------------------------------------------AACTT------------------GAATACGAACCTCAAGCAGA----------------------------AC-------------------------------C--------------------------------AGGCAAC------GA-------------------------------------------------ATCAGAATCAGA---CACA----------------------------------------ATTGCCCTTTGGCGCCGGCACCAATCAGC-CGACGTC---G------------------------------------------------------------------------CAGCAACAACAGCAACAGCAG----------------------CATCAGCAGCA---ACT-CCTG---CAGCAG---CAGCAGCAAC--------TCCAGCAGCAGC---AGCAACAACAG---C-----------AGC---------AG--------------CA-----ACTG-CTGC------AG---------------------------------CAACAGC---AGCAACAACAGCAACTG-TTGCAA
droEle1 scf7180000491255:1952399-1952598 + GC--CAA---T---------------------------TC--G---GCGTTGCGTGCTCAGC--TGAACTCTAATGTGCCAATTCTGGTAG-------------------------------------------------------------GTTAAACATG------------------ATCAATTTTGCTTTCAAAGTTTGTGTTTAA---------------------------------------------------------------------------------------------------------A---------------------------------------TAGTGCT-------------------------------------------------------------------CTATTCC---A------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTT-----------------------------------------------CAGCAG------CAACAAATCA-----TGC---AAAAGCAACATCAAC--------------------------------AG--------------CAACA--ACAGCA--AACTGCCA---C------------------------------TAGTA------------------ACAA-CAACAA
droRho1 scf7180000779699:8548-8786 + CAA-CA--------------------------------GC--A---GCAGCAACTGCTCAATAATCTAAGCAATGGCAATAATGTCACCAATGG------------------------------AAGTTTA---CCGCCACCCACGCAATTGTTGCAG----------------------------------------CATCATCTGCA--------------------------------------------------------ACATCT-GGCACATGTGA------------------------------------------------------------------ATGTGAATGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTGCTGTGGTGG-------------------CAGTTGC---AGC--CAACAACCTG---CAGCAGCAACAGCAGCA-----------------------ACA---------------------TGCCAAC---------AG--------------CAACA--ACAG-CACG------GGCAA------------------------------CAGTCCT---GGCAGCAATAATAATAA-TAACAT
droBia1 scf7180000302428:1288826-1289044 - GGC-CAA---T---------------------------TC--C---GCATTGCGTGCCCAGC--TCAACTCAAATGTGCCAATTCTGGTAA-------------------------------------------------------------GA-------G------------------GTCAACATATCACTGCAAGTTTATGATTAA---------------------------------------------------------------------------------------------------------A---------------------------------------ATGTATT----------------------------------------------CCT------------------TT--GTCCAAG------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTT-----------------------------------------------CAGCAG------CAACAGATTC-----TGC---AGAAGCAACATCAACAGC-----------------AAC---------AA--------------CAACA--ACAGAC--AACTGCCA---C------------------------------AAGTAAT---AACAACAACAACAACAA-CAGTAA
droTak1 scf7180000415878:580720-580983 + GCA--AC---A---------------------------TC--A---GCC-TGCG----CAGA--CGATCATC--------------------------------------ATCGATGAGAGCGACAATG----------AGCTG------------------GAGGACGAGCAGCAGATGAG----------------------------GC-------------------------------T--------------------------------GAATTTC------GA-----------------------------------GCGATAT-------------ATGGAGCAGCTGAA-------------------------------------------------------------------------------G----------------------------------CAGCTGGCGCCCTACGATCCCCAAGAAACTTTGTGCAATAG-------------------------------------CAATAGC---GACACCAACAT-TAAC--------------------------------------------ATTAACATGAAC---AGCAGCAA-----C---------AG--------------CAGCG--GCGAG----------C---CCAAAAATGCCAATCAAATGGAAGCTACTACAACTACT---ACTAATAGTAATAATAA-TAATAA
droEug1 scf7180000409121:45179-45390 + GGC-CAA---T---------------------------TC--A---GCATTGCGTGCCCAGC--TCAACTCAAATGTTCCAATTTTGGTAA-------------------------------------------------------------GTGAAACATT-------------A----ATCAATTTATCATTACACCTTTATAATTGT---------------------------------------------------------------------------------------------------------A---------------------------------------TCGTACT----------------------------------------------CTT------------------CT--GTCACGG------------------------------------------------------------------------CAGCAAACGCAGCTGAAGGTT-----------------------------------------------CAACAG------CAACAGACCA-----TGC---AGAAGCAACATCAACAGC-----------------AAC---------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TAGTA------------------ACAA-CAACAA
dm3 chr3L:13499622-13499813 + GGC-CAA---T---------------------------TC--A---GCGCTGCGTGCCCAGC--TCAACTCAAATGTGCCAATACTGGTTA-------------------------------------------------------------GTAGAACATG------------------GTCAATTAAGCATTGCTAGTTTGTCAATA--------------------------------------------------------ACTTTA-------------------------------------------------------------------------------------TGTACT----------------------------------------------CTC------------------CTATTCC---G------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTG-----------------------------------------------CAGCAG------CAACAGATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TA----------------------------GTAA
droSim2 x:9977101-9977365 - GCGGTAA---T---------------------------CCAG--CAGCAG--CAGGTGCAACA-----------------AATGCCGCGAATGCCGCTGATTTCAGTGCTTTCGATTTTAACGATAGTTCCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGA---CACG-----------CCCCTCGTGCCACGCCCACCGTTCCTGAGTCGCGCCGCTGCA-------------------------------------------------------------------------------A------------------------------------------------------------------------CGGCCGCCGCAGCAG-------------------------CAGCTGC---AGCAGCAGCGCTCAGCAT---CAGCAACAAC--------------------------------------------AGCAACAATTCGGC---------GGGATCAGCGGGTCAGCTGCCGCACAG-CACG------AG---------------------------------CAGCAGC---AGCAACAACAATAACAA-CAACAA
droSec2 scaffold_15:1216548-1216813 - GCGGTAA---T---------------------------CCAG--CAGCAG--CAGGTGCAACA-----------------AATGCCGCGAATGCCGCTGATTTCAGTGCTTTCGATTTTAACGATAGTTCCGAT-------------------------------------------------------------------------------------------------------------------------------------------------T------------AACTCCGA---CACG-----------CCCCTCGTGCCACGCCCACCGTTCCTGAGTCGCGCCGCTGCA-------------------------------------------------------------------------------A------------------------------------------------------------------------CGGCCGCCGCAGCAG-------------------------CAGCTGC---AGCAGCAGCGCTCAGCAT---CAGCAACAAC--------------------------------------------AGCAACAATTCGGC---------GGGATCAGCGGGTCAGCTGCCGCACAG-CACG------AG---------------------------------CAGCAGC---AGCAACAACAATAACAA-CAACAA
droYak3 3L:13602666-13602854 + GGC-CAA---C---------------------------TC--C---GCATTGCGTGCTCAGC--TCAACTCAAATGTGCCAATTTTGGTGA-------------------------------------------------------------GTAGAACATG------------------GTCTTTTAGGCATTTCAAGTCTTTCAATAC---------------------------------------------------------------------------------------------------------A---------------------------------------TTTTACT----------------------------------------------TTC------------------CTATTTT---G------------------------------------------------------------------------TAGCAAACGCAGCTGAAAGTG-----------------------------------------------CAGCAG------CAACAGATCA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TA----------------------------GTAA
droEre2 scaffold_4845:6813783-6814047 + ACGGCAA-CAA---------------------------TC--T---GCACTGGAACCTGACC--ACAAATCA-----------TCTGGTGG-------------------------------------------------------------GTAAAGCAAG------------------AA----------------------------GCCTACTTTGAAATACTTCGAAATTA-----------------AATATGCAT----------------------ATATCGAA---------CTTCTTACGGCAATGGCTTTTT--T-----------T-----------------TA-----------------------------------AC-------------------CCAAAACCCT------TCATCTT---A------------------------------------------------------------------------CAGCACAACCAGCATACGCTT-----------------------------------------------CACCAG------CAGCAGCAAC-----TTC---AGCAGCAGCAGCAGCAGCAG---C-----------AGC---------AG--------------CAGTA--CGACAA--CAATGCGC---C------------------------------CAGCAATAACAATCCCAACAACGGCAA-TGCCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACGCAAA---T---------------------------TC--A---GCATTGCGTGCTCAGC--TCAATTCCAATGTGCCAATTCTGGTAA-------------------------------------------------------------GTCAAA-ATG------------------A------------------------------------------------------------------------------------------AGTTGTATT-TATACTCCAAA----CTGTTCTCACT------------------------------------------------CT-------------------CGTTGTCTCTTTCCTCTCCCTCTATTTGTC--TTT------------------CTTTCTG---T------------------------------------------------------------------------TAGCAATCACAGCTGAAGTCTCAGCAA----------------------------CAACAT-CAAC------AT------CAACAATTGT-----TGC---AGAAGCAGCAGCAACAAC---AAC-----------AAC---------AG--------------CAACA--ACAGAC--AACTGCCA---G------------------------------CAGTAAT---AATAATAATAATAACAA-TAACAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACAGCTGAAGTCTCA........................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------CAACAT-CAAC------AT------CAACA..........................................................................................................................................................................18130.08100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---AAC-----------AAC---------AG--------------C..........................................................................................18200.05110000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC---AAC-----------AAC---------AG--------------CAACA--ACAG................................................................................23200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAAC---AAC-----------AAC---------AG--------------...........................................................................................21200.05100001
droVir3
TGC-CAA---T---------------------------TC--C---GCGTTGCGTGCCCAGC--TGAACTCCAATGTGCCAATTCTCGTAA--------------GTATTTTCAGTGTGAGCCATTTTACATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------TAATGTGT---CTGG-----------CTGATCAGA----------------------------CAGTGCTTTACGGTTCAGGGTCGTCAATACTTTACTCATATTCTAT---------T--------CCAT------TTTGCTT---T------------------------------------------------------------------------TAGCAATCACAACTGAAGGCTTCGCCGATTGTT----------------------------------------G------CCACACATCAATCACTGC---AGAAGCAACAACAG-----------------------C---------AG--------------CAGCA--ACAAAT--AACTGCCA---C------------------------------AAATA------------ACAATACCCT-CAGCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC---AGAAGCAACAACAG-----------------------C---------A..........................................................................................................2011.001000000000000000000000000000000000000010000000000000000000000000
....CAA---T---------------------------TC--C---GCGTTGCGTGCCCAGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAACTGAAGGCTTCGCCGATTGTT----------------------------------------......................................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
..............................................GCGTTGCGTGCCCAGC--TGAACTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---AGAAGCAACAACAG-----------------------C---------AG--------------CAG........................................................................................2120.501000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG-----------------------C---------AG--------------CAGCA--ACAAAT--............................................................................2260.171001000000000000000000000000000000000000000000000000000000000000
droMoj3
ACG--GC---T---------------------------AC--G---GCA--------TCAGC--CGAGTAGAAATACGCGAAATTCTTT--------TG------------------------------------------------------------------------------------------------------------------------------CCTTGAACTCGAAGAGGCTGTAATCT--------------------------------------GAT---------TTTATTATAATTTTGATTTTGC--T-----------T-----------------TCTTT-----------------------------------------------------TC-----------ATAA-ATTTT---ATAAC---A---AACTCGCAGCGGGGCAGCCGCACGCACCCACGCCC-ACAGCC--------------------ACCGAGAAAAACTGAAGGGG-----------------------------------------------AAGCAA------GAAAAAACAA-----TGC---AAAGCAAA-----------------------------------------------------------------AAC--CACCGCCA---A------------------------------TAATAAT---AATAATCATAATAACAG-AAACAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
CGC-ATA---T-------------------------------AGCAGCAATGTGGGTGCAACACTCGACAATACGATGCTGATGCTGCCAACAG-----------------------------------------------------------CAGCAACGG------------------------------------------------------------------------------------------GAATGCATAAG--GTTGCA-------AC------------AGCAATGT---CACC-----------GCTCTTGT-----------T-----------------GCTGC-----------------------------------------------------CC-----------A--AT-GGTTATGC---GAGTCAACATGGCGGAATGTTGT--------------------------------------------------------------------CACCGCCTGCA------------GC---AATATCAACAC-CACCACCAACAA------CAACAGCTGC-----AGC---AGCAGCAACTGCCA---------C-----------AAC---------AG--------------CTACT--ACAA-CAAC------AGCAG------------------------------CTGGAAT------ATCAACAACAGCAACAAACAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------AGCAG------------------------------CTGGAAT------ATCAACA..............2011.00110
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GAGTCAACATGGCGGAATGTTG..............................................................................................................................................................................................................................................................................................................2311.00101
.....................................................................................TGCCAACAG-----------------------------------------------------------CAGCAACGG------------------------------------------------------------------------------------------GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
.....................................................................AATACGATGCTGATGCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.50101
dp5
C---CAA---C---------------------------TC--T---GCTCTGCGTGCCCAGC--TGAACTCCAATGTGCCAATTCTGGTGA-------------------------------------------------------------GTAATAAATG------------------------------------------------------------------------------------------CAATGTGCAAAGGATTTCA-------TT---------GA-------------------CTCT-------CA--C-----------T-----------------CTTTT-----------------------------------------------------CT-----------ATCCATTCCG---A------------------------------------------------------------------------CAGCAATCGCAGCTGAAGGCTCAGCAG-CTAATGCAAAAGCAGCAGC----------------------------AACAGCAGCAGC--------------ATCAGC---AGCAGCAAC---AGC-----------AGC---------AG--------------CAACA--ACAGAC--AACTGCCT---C------------------------------CAGTAA------------------TAA-CAATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGGCTCAGCAG-CTAATGC............................................................................................................................................................................................................................2011.0010100000000
C---CAA---C---------------------------TC--T---GCTCTGCGTGCCCAGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCAAAAGCAGCAGC----------------------------AACAGC..............................................................................................................................................................................2211.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------AG--------------CAACA--ACAGAC--AACTGCCT---C------------------------------CA................................2511.0010010000000
..........C---------------------------TC--T---GCTCTGCGTGCCCAGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC--------------ATCAGC---AGCA.............................................................................................................................................2190.1110100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------AACAGCAGCAGC--------------ATCAGC---.................................................................................................................................................19200.0510100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC----------------------------AACAGCAGCAGC--------------ATC.......................................................................................................................................................20200.0510100000000
droPer2
G------------------------------------------------------------C--TGAACTCCAATGTGCCAATTCTGGTGA-------------------------------------------------------------GTAATAAATG------------------------------------------------------------------------------------------CAATGTGCAAAGGATTTCA-------TT---------GA-------------------CTCT-------CA--C-----------T-----------------CTCTC-----------------------------------------------------CT-----------ATCCATTCCG---A------------------------------------------------------------------------CAGCAATCGCAGCTGAAGGCTCAGCAG-CTAATGCAAAAGCAGCAGC------------AA-------CAGCAG---CAGCAGCAGC--------ATCAGCAGCAGC---AGCAACAGCAG---C-----------AGCAGCAGCAACAG--------------CAACA--ACAGAC--AACTGCCT---C------------------------------CAGTAAT------AACAATAACAACAA-TAACAGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................CAATGTGCAAAGGATTTCA-------TT---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGCAGC---AGCAACAGCAG---C-----------.......................................................................................................................2440.251010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC------------AA-------CAGCAG---CA................................................................................................................................................................................19200.102002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAG---C-----------AGCAGC.................................................................................................................20200.051010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG---C-----------AGCAGCAGCAACAG--------------CAAC.......................................................................................25200.051010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------AA-------CAGCAG---CAGCAGC...........................................................................................................................................................................19200.051000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCAGCAGC--------ATCAGCAGCAG.....................................................................................................................................................23200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGC--------ATCAGCAGCAGC---AG...............................................................................................................................................24200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAG---C-----------AGCAGCAGCAACAG--------------...........................................................................................22200.051010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---AGCAACAGCAG---C-----------A......................................................................................................................20200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAG---C-----------AGCAGCA................................................................................................................22200.051010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---AGCAACAGCAG---C-----------AG.....................................................................................................................23200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC------------AA-------CAGCAG---CAGCAGCAGC--------................................................................................................................................................................25200.051100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------ATCAGCAGCAGC---AGCA.............................................................................................................................................18200.051010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC------------AA-------CAGCAG---CAGCA.............................................................................................................................................................................21200.051001000
droAna3
GC--CAA---C---------------------------TC--C---GCATTGCGTGCCCAGC--TGAACTCCAATGTGCCAATCCTGGTAA-------------------------------------------------------------GGT----------------------------------------------------------------------------------------TGAGATCTTCAGAGCGCC----------AGTCATATGTTA------TG-------------------C--------------------------------------------TTGTGCT----------------------------------------------TTT------------------TTTTGTC---A------------------------------------------------------------------------CAGCAATCGCACCTCAAAGTT-----------------------------------------------CAACAG------CAGCAACTCA-----TAC---AGAAGCAGCACCAGC--------------------ATC---------AA--------------CAGCA--ACAGAC--AACTGCCA---C----------------------------------------------------------TAACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................TGAACTCCAATGTGCCAATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
droBip1
TC--CAA---T---------------------------TC--C---GCATTGCGTGCCCAAC--TCAACTCCAATGTGCCAATCCTGGTAA-------------------------------------------------------------GGC----------------------------------------------------------------------------------------TGAGATCTCCAGAGTGCA----------AGTCATATGTTA------TG-------------------G--------------------------------------------TTGTGCG-----------------------------------------------TC------------------TTTTCCC---G------------------------------------------------------------------------TAGCAATCGCAGCTCAAAGTT-----------------------------------------------CAACAG------CAGCAGCTTA-----TTC---AGAAGCAACACCAGC--------------------ATC---------AG--------------CAACA--ACAGAC--AACTGCCA---C----------------------------------------------------------TAACAASizeHit CountTotal NormTotal
No Reads
droKik1
AGC-GAA---T---------------------------TC--C---GCATTGCGTGCCCAGC--TCAACTCTAGCGGGCCAATTCTGGTAG-------------------------------------------------------------GAC----------------------------------------------------------------------------------------CACGACCTTG-ATATGCA----------AGACTTGTTTAC------TA-------------------A--------------------------------------------TTATATT----------------------------------------------ATC------------------CTGTTTT---T------------------------------------------------------------------------TAGCAATCGCAGCTGAAAGTT-----------------------------------------------CAGCAGCCGCAGCAGCAGATCA-----TGC---CGAAGCAACAT----------------------------------------------------CAGCA--ACAGAC--AACTGCCA---C------------------------------TAGCAAC---------ACCAACAATAA-T-ACAASizeHit CountTotal NormTotal
No Reads
droFic1
ACA--GAGCAATCCGCAAATGAATCCTGCATATCAGTTCCAG--CAACAACAGCCGCCCGGC--CAAACCAAAATGA----ATGCC-----------------------------------------------------AACTT------------------GAATACGAACCTCAAGCAGA----------------------------AC-------------------------------C--------------------------------AGGCAAC------GA-------------------------------------------------ATCAGAATCAGA---CACA----------------------------------------ATTGCCCTTTGGCGCCGGCACCAATCAGC-CGACGTC---G------------------------------------------------------------------------CAGCAACAACAGCAACAGCAG----------------------CATCAGCAGCA---ACT-CCTG---CAGCAG---CAGCAGCAAC--------TCCAGCAGCAGC---AGCAACAACAG---C-----------AGC---------AG--------------CA-----ACTG-CTGC------AG---------------------------------CAACAGC---AGCAACAACAGCAACTG-TTGCAASizeHit CountTotal NormTotal
No Reads
droEle1
GC--CAA---T---------------------------TC--G---GCGTTGCGTGCTCAGC--TGAACTCTAATGTGCCAATTCTGGTAG-------------------------------------------------------------GTTAAACATG------------------ATCAATTTTGCTTTCAAAGTTTGTGTTTAA---------------------------------------------------------------------------------------------------------A---------------------------------------TAGTGCT-------------------------------------------------------------------CTATTCC---A------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTT-----------------------------------------------CAGCAG------CAACAAATCA-----TGC---AAAAGCAACATCAAC--------------------------------AG--------------CAACA--ACAGCA--AACTGCCA---C------------------------------TAGTA------------------ACAA-CAACAASizeHit CountTotal NormTotal
No Reads
droRho1
CAA-CA--------------------------------GC--A---GCAGCAACTGCTCAATAATCTAAGCAATGGCAATAATGTCACCAATGG------------------------------AAGTTTA---CCGCCACCCACGCAATTGTTGCAG----------------------------------------CATCATCTGCA--------------------------------------------------------ACATCT-GGCACATGTGA------------------------------------------------------------------ATGTGAATGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------GCCGCTGCTGTGGTGG-------------------CAGTTGC---AGC--CAACAACCTG---CAGCAGCAACAGCAGCA-----------------------ACA---------------------TGCCAAC---------AG--------------CAACA--ACAG-CACG------GGCAA------------------------------CAGTCCT---GGCAGCAATAATAATAA-TAACATSizeHit CountTotal NormTotal
No Reads
droBia1
GGC-CAA---T---------------------------TC--C---GCATTGCGTGCCCAGC--TCAACTCAAATGTGCCAATTCTGGTAA-------------------------------------------------------------GA-------G------------------GTCAACATATCACTGCAAGTTTATGATTAA---------------------------------------------------------------------------------------------------------A---------------------------------------ATGTATT----------------------------------------------CCT------------------TT--GTCCAAG------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTT-----------------------------------------------CAGCAG------CAACAGATTC-----TGC---AGAAGCAACATCAACAGC-----------------AAC---------AA--------------CAACA--ACAGAC--AACTGCCA---C------------------------------AAGTAAT---AACAACAACAACAACAA-CAGTAASizeHit CountTotal NormTotal
No Reads
droTak1
GCA--AC---A---------------------------TC--A---GCC-TGCG----CAGA--CGATCATC--------------------------------------ATCGATGAGAGCGACAATG----------AGCTG------------------GAGGACGAGCAGCAGATGAG----------------------------GC-------------------------------T--------------------------------GAATTTC------GA-----------------------------------GCGATAT-------------ATGGAGCAGCTGAA-------------------------------------------------------------------------------G----------------------------------CAGCTGGCGCCCTACGATCCCCAAGAAACTTTGTGCAATAG-------------------------------------CAATAGC---GACACCAACAT-TAAC--------------------------------------------ATTAACATGAAC---AGCAGCAA-----C---------AG--------------CAGCG--GCGAG----------C---CCAAAAATGCCAATCAAATGGAAGCTACTACAACTACT---ACTAATAGTAATAATAA-TAATAASizeHit CountTotal NormTotal
No Reads
droEug1
GGC-CAA---T---------------------------TC--A---GCATTGCGTGCCCAGC--TCAACTCAAATGTTCCAATTTTGGTAA-------------------------------------------------------------GTGAAACATT-------------A----ATCAATTTATCATTACACCTTTATAATTGT---------------------------------------------------------------------------------------------------------A---------------------------------------TCGTACT----------------------------------------------CTT------------------CT--GTCACGG------------------------------------------------------------------------CAGCAAACGCAGCTGAAGGTT-----------------------------------------------CAACAG------CAACAGACCA-----TGC---AGAAGCAACATCAACAGC-----------------AAC---------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TAGTA------------------ACAA-CAACAASizeHit CountTotal NormTotal
No Reads
dm3
GGC-CAA---T---------------------------TC--A---GCGCTGCGTGCCCAGC--TCAACTCAAATGTGCCAATACTGGTTA-------------------------------------------------------------GTAGAACATG------------------GTCAATTAAGCATTGCTAGTTTGTCAATA--------------------------------------------------------ACTTTA-------------------------------------------------------------------------------------TGTACT----------------------------------------------CTC------------------CTATTCC---G------------------------------------------------------------------------CAGCAAACGCAGCTGAAAGTG-----------------------------------------------CAGCAG------CAACAGATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TA----------------------------GTAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................CGCTGCGTGCCCAGC--TCAACTCAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGCCCAGC--TCAACTCAAATGTGCCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................TCAACTCAAATGTGCCAATACTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------C..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------CAACAGATTA-----TGC---AGAAGCAAC--------------------------------------A..........................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GCGCTGCGTGCCCAGC--TCAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................GTACT----------------------------------------------CTC------------------CTATTCC---G------------------------------------------------------------------------CAGCAA.........................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------...........................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAAC--------------------------------------AG--------------CAACA--ACAGAC--............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAC--AACTGCCA---C------------------------------TA----------------------------GTAA2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CAGC--TCAACTCAAATGTGCCAATAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--ACA.................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATTA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAAC.......................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTA-----TGC---AGAAGCAAC--------------------------------------A..........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AA---T---------------------------TC--A---GCGCTGCGTGCCCAGC--TCAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATTA-----TGC---AGAAGCA...................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAACAGATTA-----TGC---AGA.......................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.................................................CTGCGTGCCCAGC--TCAACTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAACAGATTA-----TGC---AGAAGCAA..................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATTA-----TGC---AGAAGCAAC--------------------------------------A..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGATTA-----TGC---AGAAGCAA..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................TC--A---GCGCTGCGTGCCCAGC--T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------CAACAGATTA-----TGC---AGAAG.....................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAAC--------------------------------------AG--------------CAACA--ACA.................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCGGTAA---T---------------------------CCAG--CAGCAG--CAGGTGCAACA-----------------AATGCCGCGAATGCCGCTGATTTCAGTGCTTTCGATTTTAACGATAGTTCCGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------AACTCCGA---CACG-----------CCCCTCGTGCCACGCCCACCGTTCCTGAGTCGCGCCGCTGCA-------------------------------------------------------------------------------A------------------------------------------------------------------------CGGCCGCCGCAGCAG-------------------------CAGCTGC---AGCAGCAGCGCTCAGCAT---CAGCAACAAC--------------------------------------------AGCAACAATTCGGC---------GGGATCAGCGGGTCAGCTGCCGCACAG-CACG------AG---------------------------------CAGCAGC---AGCAACAACAATAACAA-CAACAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-------------------------CAGCTGC---AGCAGC.......................................................................................................................................................................................................19200.05100000000001000000
droSec2
GCGGTAA---T---------------------------CCAG--CAGCAG--CAGGTGCAACA-----------------AATGCCGCGAATGCCGCTGATTTCAGTGCTTTCGATTTTAACGATAGTTCCGAT-------------------------------------------------------------------------------------------------------------------------------------------------T------------AACTCCGA---CACG-----------CCCCTCGTGCCACGCCCACCGTTCCTGAGTCGCGCCGCTGCA-------------------------------------------------------------------------------A------------------------------------------------------------------------CGGCCGCCGCAGCAG-------------------------CAGCTGC---AGCAGCAGCGCTCAGCAT---CAGCAACAAC--------------------------------------------AGCAACAATTCGGC---------GGGATCAGCGGGTCAGCTGCCGCACAG-CACG------AG---------------------------------CAGCAGC---AGCAACAACAATAACAA-CAACAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
GGC-CAA---C---------------------------TC--C---GCATTGCGTGCTCAGC--TCAACTCAAATGTGCCAATTTTGGTGA-------------------------------------------------------------GTAGAACATG------------------GTCTTTTAGGCATTTCAAGTCTTTCAATAC---------------------------------------------------------------------------------------------------------A---------------------------------------TTTTACT----------------------------------------------TTC------------------CTATTTT---G------------------------------------------------------------------------TAGCAAACGCAGCTGAAAGTG-----------------------------------------------CAGCAG------CAACAGATCA-----TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--ACAGAC--AACTGCCA---C------------------------------TA----------------------------GTAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC---AGAAGCAAC--------------------------------------AG--------------CAACA--A...................................................................................2020.50101000000000
droEre2
ACGGCAA-CAA---------------------------TC--T---GCACTGGAACCTGACC--ACAAATCA-----------TCTGGTGG-------------------------------------------------------------GTAAAGCAAG------------------AA----------------------------GCCTACTTTGAAATACTTCGAAATTA-----------------AATATGCAT----------------------ATATCGAA---------CTTCTTACGGCAATGGCTTTTT--T-----------T-----------------TA-----------------------------------AC-------------------CCAAAACCCT------TCATCTT---A------------------------------------------------------------------------CAGCACAACCAGCATACGCTT-----------------------------------------------CACCAG------CAGCAGCAAC-----TTC---AGCAGCAGCAGCAGCAGCAG---C-----------AGC---------AG--------------CAGTA--CGACAA--CAATGCGC---C------------------------------CAGCAATAACAATCCCAACAACGGCAA-TGCCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCATACGCTT-----------------------------------------------CACCAG------C..............................................................................................................................................................................2211.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTA--CGACAA--CAATGCGC---C------------------------------C.................................2011.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCCCAACAACGGCAA-TGCC..2411.0011000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACAATCCCAACAACGGCAA-T.....2211.0011000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----TTC---AGCAGCAGCAGCAGCA..........................................................................................................................................2220.5010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG------CAGCAGCAAC-----TTC---AGCAGCA...................................................................................................................................................2250.2010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAAC-----TTC---AGCAGCAGC.................................................................................................................................................2080.1311000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----TTC---AGCAGCAGCAGCAGC...........................................................................................................................................19160.1320010010

Generated: 05/17/2015 at 11:10 PM