ID:

dwi_422

 Coordinate:

scf2_1100000004510:1476691-1476841 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.3 -5.2 -5.2

Flybase annnotation

exon [dwil_GLEANR_3662:10]; CDS [Dwil\GK20897-cds]; intron [Dwil\GK20897-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAGCCGAGGAACAGCTTACGTATAGCCGCAAGGATTCGTCGATCAATCAGGTTAATACCCAAAAAGATTCTAACAAAAGAATTGCGGTAGGAGGAGCAGGAAATAGTAGTAGTAGTAGTAAGGGAGGACAGAGTCGTAATCGCAATAAGCGTAACTGTAGGGTTCGATTAAGTAGAAGTGTTAGCCATTCGAAAAAGGAATCGGCAGCAGCGTCAACAACTCAAAGTAGTCCGAAAAGAACACGTCGTAAC
*****************************************************************************************************************............((((...........(((.....)))..........)))).************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 M020
head
 V117
male body
.....................ATAGCCGCAAGGATTCGTC................................................................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0
.................................................................................................................AGTAGTAAGGGAGGACAGA....................................................................................................................... 19 0 1 1.00 1 1 0 0 0
..............................................................................................................................GACAGAGTCGTAATCGCAATAAGCGT................................................................................................... 26 0 1 1.00 1 1 0 0 0
..............................................................................................................................................CAATAAGCGTAACTGTAGGGTTCG..................................................................................... 24 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................GATTAAGTAGAAGTGTTAGC.................................................................. 20 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................GTTAGCCATTCGAAAAAG...................................................... 18 0 1 1.00 1 1 0 0 0
...................GTATAGCCGCAAGGATTCGTCGAT................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
....................................................................................................................AGTAAGGGAGGACAGAGTCGTAATC.............................................................................................................. 25 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................CATTCGAAAAAGGAATCGGC.............................................. 20 0 1 1.00 1 1 0 0 0
................................................................................................................TAGTAGTAAGGGAGGACAGAGTCG................................................................................................................... 24 0 1 1.00 1 0 1 0 0
................................................................................ATTGCGGTAGGAGGAGCAGGAAA.................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................TGTAGGGTTCGATTAAGTAGAAGT........................................................................ 24 0 1 1.00 1 1 0 0 0
..GCCGAGGAACAGCTTACGTAT.................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................GCGTAACTGTAGGGTTCG..................................................................................... 18 0 1 1.00 1 0 0 1 0
.....................................................................................................................................................................GATTAAGTAGAAGTGTTAGCCATT.............................................................. 24 0 1 1.00 1 1 0 0 0
........GAACAGCTTACGTATAGCCGCAAGGA......................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.............................AAGGATTCGTCGATCAATCAGGTGT..................................................................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0
...........................................................................................................................................................................................................................CTCAAAGTAGTCCGAAAAGA............ 20 0 1 1.00 1 1 0 0 0
..............................................................................GAATTCCGGTATGAGTAGC.......................................................................................................................................................... 19 3 10 0.40 4 0 2 0 2
.........................................................................................GGAGTCGCAGGAAACAGTA............................................................................................................................................... 19 3 20 0.15 3 2 1 0 0
..............................................................................GAATGCCGGTATGAGGAGC.......................................................................................................................................................... 19 3 7 0.14 1 0 0 0 1
..........................................................................AAAGGAAGTGCGGTAGGATG............................................................................................................................................................. 20 3 14 0.07 1 0 0 0 1
.....................................................................................................................................................................GATTAAGTGGATGAGTTAGC.................................................................. 20 3 15 0.07 1 0 1 0 0

Anti-sense strand reads

GTCGGCTCCTTGTCGAATGCATATCGGCGTTCCTAAGCAGCTAGTTAGTCCAATTATGGGTTTTTCTAAGATTGTTTTCTTAACGCCATCCTCCTCGTCCTTTATCATCATCATCATCATTCCCTCCTGTCTCAGCATTAGCGTTATTCGCATTGACATCCCAAGCTAATTCATCTTCACAATCGGTAAGCTTTTTCCTTAGCCGTCGTCGCAGTTGTTGAGTTTCATCAGGCTTTTCTTGTGCAGCATTG
*************************************************************************************............((((...........(((.....)))..........)))).***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M020
head
 M045
female body
 V119
head
...............................TCTAAGCTGCTAGTTAGTCGA....................................................................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0
...............................................................................................................................TGTCTCAGCATTAGCGTTATT....................................................................................................... 21 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................CACAGTCGGTAGGCTTTT........................................................ 18 2 5 0.60 3 0 3 0 0
...................................AGCTGCTAGTTAGTCGAAG..................................................................................................................................................................................................... 19 3 20 0.45 9 9 0 0 0
.................................................................................................................................................................................CACAGTCGGTAGGCTTTTAC...................................................... 20 3 9 0.44 4 0 1 3 0
.................................TAAGCTGCTAGTTAGTCGAAG..................................................................................................................................................................................................... 21 3 5 0.40 2 2 0 0 0
...................................................................................................................................................................................................................................TCATGCATCTCTTGTGCAGC.... 20 3 3 0.33 1 0 1 0 0
.................................TAAGCTGCTAGTTAGTCGA....................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0
..................................AAGCTGCTAGTTAGTCGAAG..................................................................................................................................................................................................... 20 3 7 0.14 1 1 0 0 0
.....................................CACCTAGTTAGTCCGATTAG.................................................................................................................................................................................................. 20 3 8 0.13 1 1 0 0 0
................................CTAAGCTGCTAGTTAGTCG........................................................................................................................................................................................................ 19 2 13 0.08 1 1 0 0 0
............................................................................................................................................................................................................................AGGTTCATCAGGCTTTAC............. 18 2 15 0.07 1 0 0 1 0
....................................TCACCTAGTTAGTCCGATTA................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1 0
..............................................................................................................................................................................CTTCACATTCGGTAAGGTC.......................................................... 19 3 20 0.05 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004510:1476641-1476891 + dwi_422 CAGCCGAGGAACAGCTTACGTATAGCCGCAAGGATTCGTCGATCAATCAGGTTAA------TACCCAAAAAGATTCT---AA------CAAAAGA------ATTGCGGTAGGAGGAGCAG---GA----------------------------------------------------------------------------AATAGTAGTAGTAGTAGTA---------------A---------GGG---A------GGACAGA---GT------CGTAATCGCAATAAGCGTAACTGTAGGGTTC--GATTAAGTAGAAGTGTTAGC------C-----A-------------TTCGAAAAAGGAATCGGCAGCAGCGTCAACAACTCAAAGTAGTCCGAAAAGAACACGTCGTAAC-----------------------------------
droVir3 scaffold_12875:18057955-18058198 - dvi_7636 -GGCCGATGAGCTACTGACCTACAGTCGCAAGGATGC---CAGTAATCAGGTTAA------TACCAAACAAGATTCC---AATCTAAGCAAACGA------ACACCGATTGTAGGGGTAG---GCATTAGGCTAACTAAGCATAATAAGCGGGATAAACGGTTTAAGCAACACGG----------------------TGTAGCCAGGG-----------------------------------------------------------------------------------------------GTCCGGGGTTAAGTAGAAGCGTAAGC------A---ACAAGTCAAGAACAAGTCTGCAGCAA---------------------------GCTAGTCCGGTGCGCACGCGTCGCAAC-----------------------------------
droMoj3 scaffold_6496:11679078-11679328 - ---CCGAGGAGCTTCTGACATACAGTCGCAAGGATGC---CAGTAACCAGGTTAA------TACCAAACAAGATTCC---AATCTAAGTAAACGA------ACATCGATTGTAGCGGTAGGAGGTATTAGGCTAACCAAGCAGAATAAGCGCGACAAACGGTTTAAGCAACACGG----------------------TATAACCAGGGGTG--------------------------------------------------------------------------------------------GTCCGGGTTTAAGTAGAAGTGTAAGT------AACCACAAGTCAAGATCCAATGTGCAGCAG---------------------------ACTAGTCCAGTACGCACGCGCCGAAAT-----------------------------------
droGri2 scaffold_15245:4186639-4186918 - -GGCGGAAGAGCTGCTCACCTACAGTCGCAAGGATGC---CAGCAATCAGGTTAATACC---ACCAAACAAGATTCC---AATCTAAGCAAACGA------ACACCAGGTGTTGGGCTAG---GCGTTAGGTTAACCAAACACAATAAGCGGGATAAAAGATTCAGACATCATGGGGTAGGTCGGGCAGCGGCAACCGCC-------GG------------------------------------------------------------------------------------------------T--GGGTTAAGTCGAAGCGTTACCAGCAACAACAACAGGCAAAGATCAAATGTGCAACAGGCTGCGGCAGCG---------------GCTAGTTCGGTGAGCTCGCATCGAAAT-----------------------------------
dp5 3:9791263-9791509 - -GGCTGAGGAACTGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAATGTCAATACCAAACAAGATTCCCATTCATCCAAAAAGCGA------GCCCCAGCCA---G------------TAGGT---CTCAGCGCAACAGGCAGGGT-------------------------------CAGCAGCACCAGCTGAGCAGGAGTGTGAGCAGC---AGCCACAGTGGCAGCAGTAACCAGAA---GAGATCAGTGCCGCCTGCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------GTCGTGTCGGCGTCGTGTC------
droPer2 scaffold_4:5106700-5106946 - -GGCTGAGGAACTGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAATGTCAATACCAAACAAGATTCCCATTCATCCAAAAAGCGA------GCCCCAGCCA---G------------TAGGT---CTCAGCGCAACAGGCAGGGT-------------------------------CAGCAGCACCAGCTGAGCAGGAGTGTGAACAGC---AGCCACAGTGGCAGCAGTAACCAGAA---GAGATCAGTGCCGCCTGCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------GTCGTGTCGGCGTCGTGTC------
droAna3 scaffold_13266:5024395-5024599 + -GGCCGAGGAGCTTCTCACCTACAGTCGCAAGGACTC---CAGCAAGCAGGTTAA------TAGCAAAAAAGATTCCTCCACTCCCTATAAGCGG------CCGCTCGTGC---GGG----------TAATG--------CGCAGCAATTCAAAT-------------------------------CA------GAAGATTAACAGGAGTATTAGTAGTAGTCATAGTGGTAGCAATAGTAACGGCAGGAAGAGATTGG------TGCGC------GGAACGC--------------------------------------------------------------------------------------------------------------------------------GTCAGAAC-----------------------------------
droBip1 scf7180000395751:833881-834085 + -GGCCGAGGAGCTTCTCACCTACAGTCGCAAGGACTC---CAGCAAGCAGGTTAA------TAGCAAAAAAGATTCCTCCACTTCCCATAAGCAA------CCACGCGTGC---GGG----------TAATG--------CGCAGCAACTCAAGT-------------------------------CA------GAAGATTAACAGGAGTATTAGTAGTAGTCATAACAGTAGCCAGGGTAACAGCAGGAAGAGATTGG------TGCGC------GGAACGC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droKik1 scf7180000302411:451628-451835 + -GGCCGAGGAGCTGCTCACCTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TACCAAACAAGATTCC---ACTTCCAATAGGCGAAAGCAACCCCTGGTGA---GGG----------TGATG--------CGCAGCAAGTCGGCT-------------------------------AA------GAAGCTAAGCAAGAGTATCAGTAGCCAGAGCAACAGTAATAGTGATAGCAAGAA---GAGATCAGCTCTGG---GT------AGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAT-----------------------------------
droFic1 scf7180000453811:46906-47104 - -AGCCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TACCAAACAAGATTCC---AATACCAATAGGCGA------CCAATGGTTA---GGG----------CAAAG--------CGAAGCGACTCAGCT-------------------------------CA------GAAGCTCAGCAGGAGTATCAGTAGT------ACTAGTAGCAACGGCAAGAACAA---GAGATCAGCACCGATGCGG------GGTACTC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droEle1 scf7180000491232:151804-152008 - -AGCCGAGGAGATGCTTACCTACAGTCGCAAGGATTC---AAGCAATCAGGTTAA------TACCAAACAAGATTCC---ACTTCCAATAAGCGA------CCAGCGGTGA---GGG----------CAAAT--------CGCAGCCGGTCAGCT-------------------------------CA------GAAGCTAAGCCGGAGTGTCAGTAGCCATAGCAACAGTAGCAACGGCAGAAGTAA---GAGATCGGCTCCGATTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------TCCAGAAC-----------------------------------
droRho1 scf7180000780265:146075-146279 - -AGCCGAGGAGATGCTCACGTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TAACAAACAAGATTCC---ACTTCAAATAAGCGA------CAGTTAGTGA---GGG----------CAAAT--------CGGAGCCGATCAGCT-------------------------------CA------GAAGTTGAGTAGGAGTGTTAGTAGCCATAGCAACAGTAGCAACAGCAGAAGTAA---GAGATCGGCTCCAAGTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAGC-----------------------------------
droBia1 scf7180000302143:1184396-1184627 - ---CCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAGCAAACAAGATTCC---TCTTCTAATAAGCGA------CCACTGGTGA---GGG----------TAAAT--------CGCAGCAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGTAGCCATAGCAACAGTAGCAACAGTAAAAGTAG---AAGATCGGCTCCGATAAGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAACAGCCTCAATTCAAGTGCTCCCGTCGGGGC------
droTak1 scf7180000415722:113101-113303 + ---CCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAACAAACAAGATTCC---ACTTCCAATAAGCGA------CCATCGGTGA---GGG----------TAAAT--------CGCAGCAACTCAGCT-------------------------------CA------GAAGCTGACCAGGAGTATCAGTAGCCATAGTAACAGTAGCAACAGCAAGAATAG---GAGATCAGCTCCGATTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droEug1 scf7180000409474:720667-720871 - -AGCCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAGCAAAAAAGATTCC---ACTTCCAATAAGCGA------CCACTGGTGA---GGG----------TGAAA--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTCAGTAGTCATAGCAACAGTAGTAACAGCAAAAATAA---GAGATCGATTCCGGTCCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
dm3 chr2R:17222052-17222256 + -AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------AAAAT--------CGCAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAACGACCCGT------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droSim2 2r:17776478-17776682 + dsi_2748 -AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TGCCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------TAAAT--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAATGACCCGA------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droSec2 scaffold_9:553435-553639 + -AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------TAAAT--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGTCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAATGACCCGA------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droYak3 2R:11966121-11966322 - -AGCGGATGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAAAAGATTCC---ACTTCCAATAAGCGA------ACACTGGTGA---GGG----------TAAAT--------CGGAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCAACGGTAGCAACAAGAA---CAG---TAAATCGGCAACGACTCGA------GGAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------
droEre2 scaffold_4845:11365852-11366091 + -AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAAAAGATTCC---ACTTCCAATAAGCGA------CCACTGGTGA---GGG----------TAAAT--------CGGAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCAACGGTAGCAACAACAAAACCAG---TAAATCGGCAACGACTCGA------GGAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGAACAGCCTCAATCAGAGTGTACCAATGGGGTCAGGAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAGCCGAGGAACAGCTTACGTATAGCCGCAAGGATTCGTCGATCAATCAGGTTAA------TACCCAAAAAGATTCT---AA------CAAAAGA------ATTGCGGTAGGAGGAGCAG---GA----------------------------------------------------------------------------AATAGTAGTAGTAGTAGTA---------------A---------GGG---A------GGACAGA---GT------CGTAATCGCAATAAGCGTAACTGTAGGGTTC--GATTAAGTAGAAGTGTTAGC------C-----A-------------TTCGAAAAAGGAATCGGCAGCAGCGTCAACAACTCAAAGTAGTCCGAAAAGAACACGTCGTAAC-----------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................ATAGCCGCAAGGATTCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.....................................................................................................................................................................................................................AGTAGTA---------------A---------GGG---A------GGACAGA---..........................................................................................................................................................................................1911.00100010
...................................................................................................................................................................................................................................................................GACAGA---GT------CGTAATCGCAATAAGCGT................................................................................................................................................................2611.00100010
............................................................................................................................................................................................................................................................................................CAATAAGCGTAACTGTAGGGTTC--G................................................................................................................................................2411.00100010
.....................................................................................................................................................................................................................................................................................................................GATTAAGTAGAAGTGTTAGC------.......................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................................GTTAGC------C-----A-------------TTCGAAAAAG.........................................................................................1811.00100010
...................GTATAGCCGCAAGGATTCGTCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................................................................................................................................AGTA---------------A---------GGG---A------GGACAGA---GT------CGTAATC...........................................................................................................................................................................2511.00100010
...............................................................................................................................................................................................................................................................................................................................................C-----A-------------TTCGAAAAAGGAATCGGC.................................................................................2011.00100010
....................................................................................................................................................................................................................TAGTAGTA---------------A---------GGG---A------GGACAGA---GT------CG................................................................................................................................................................................2411.00101000
.....................................................................................................ATTGCGGTAGGAGGAGCAG---GA----------------------------------------------------------------------------AA...........................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................................................................................................................................................................................TGTAGGGTTC--GATTAAGTAGAAGT...................................................................................................................................2411.00100010
..GCCGAGGAACAGCTTACGTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..................................................................................................................................................................................................................................................................................................GCGTAACTGTAGGGTTC--G................................................................................................................................................1811.00110000
.....................................................................................................................................................................................................................................................................................................................GATTAAGTAGAAGTGTTAGC------C-----A-------------TT.................................................................................................2411.00100010
........GAACAGCTTACGTATAGCCGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
.............................AAGGATTCGTCGATCAATCAGGTGT................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
...................................................................................................................................................................................................................................................................................................................................................................................................CTCAAAGTAGTCCGAAAAGA...............................................2011.00100010
droVir3
-GGCCGATGAGCTACTGACCTACAGTCGCAAGGATGC---CAGTAATCAGGTTAA------TACCAAACAAGATTCC---AATCTAAGCAAACGA------ACACCGATTGTAGGGGTAG---GCATTAGGCTAACTAAGCATAATAAGCGGGATAAACGGTTTAAGCAACACGG----------------------TGTAGCCAGGG-----------------------------------------------------------------------------------------------GTCCGGGGTTAAGTAGAAGCGTAAGC------A---ACAAGTCAAGAACAAGTCTGCAGCAA---------------------------GCTAGTCCGGTGCGCACGCGTCGCAAC-----------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................ATAATAAGCGGGATAAACGGT....................................................................................................................................................................................................................................................................................................2112.002000000000000010000000000000000001000000000000000000000000000000
...................CTACAGTCGCAAGGATGC---CAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AACAAGTCTGCAGCAA---------------------------GCTAGTCCGGTGC.................................................2911.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................GA------ACACCGATTGTAGGGGTAG---GCA........................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AACAAGTCTGCAGCAA---------------------------GCTAGTCCGGT...................................................2711.001000000000000000100000000000000000000000000000000000000000000000
...........................GCAAGGATGC---CAGTAATCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000001000000000000000000000000000000000000000000000000000
....................TACAGTCGCAAGGATGC---CAGTAATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000001000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................AACAAGTCTGCAGCAA---------------------------GCT...........................................................1911.001000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGTAGCCAGGG-----------------------------------------------------------------------------------------------GTCCGGG................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
.............................AAGGATGC---CAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000010000000000000000000000000
..................................................................................................................GGGTAG---GCATTAGGCTAACTAAGCA........................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.............................................................................................GA------ACACCGATTGTAGGGGT................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000010000000000000000000000000
................GACCTACAGTCGCAAGGATGC---CAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................GCGGGATAAACGGTTTAAGC..............................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................CAAACGA------ACACCGATTGTAGG...................................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
.GGCCGATGAGCTACTGACCTA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000010000000000000000000000000000
..............CTGACCTACAGTCGCAAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................CGA------ACACCGATTGTAGGGGTAG---GC.........................................................................................................................................................................................................................................................................................................................................2411.001000000000001000000000000000000000000000000000000000000000000000
..........................CGCAAGGATGC---CAGTAATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000001000000000000000000000000000000000000000000000000000
....CGATGAGCTACTGACCTACAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000010000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................GTCCGGGGTTAAGTAGAAGC...................................................................................................................................2011.001100000000000000000000000000000000000000000000000000000000000000
..............................AGGATGC---CAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................1711.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................TCTAAGCAAACGA------ACACCGATTGTAG....................................................................................................................................................................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................GG----------------------TGTAGCCAGGG-----------------------------------------------------------------------------------------------GTCCGGGGTTAAGT.........................................................................................................................................2711.001000000000000100000000000000000000000000000000000000000000000000
..................................TGC---CAGTAATCAGGTTAA------TACCAAAC.................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........GAGCTACTGACCTACAGTCGCAAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000001000000000000000000000000000
.............ACTGACCTACAGTCGCAAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000001000000000000000000000000000000
...............................................CAGGTTAA------TACCAAACAAGATTCC---A.....................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000100000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................AGCAA---------------------------GCTAGTCCGGTGC.................................................1811.001000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................GGTTAAGTAGAAGCGTAAGC------A---AC.................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
...................CTACAGTCGCAAGGATGC---CAGTAATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................GATTGTAGGGGTAG---GCATTAG....................................................................................................................................................................................................................................................................................................................................2111.001000000000000010000000000000000000000000000000000000000000000000
....................................................TAA------TACCAAACAAGATTCC---AA....................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................A------ACACCGATTGTAGGGGTAG---GC.........................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
....CGATGAGCTACTGACCTACAGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000010000000000000000000000000000000000000000000000000
.......................................................................................................ACCGATTGTAGGGGTAG---GC.........................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................CTGCAGCAA---------------------------GCTAGTCCGGTGC.................................................2211.001000000000000000000000000000000000000000000000000000000000100000
droMoj3
---CCGAGGAGCTTCTGACATACAGTCGCAAGGATGC---CAGTAACCAGGTTAA------TACCAAACAAGATTCC---AATCTAAGTAAACGA------ACATCGATTGTAGCGGTAGGAGGTATTAGGCTAACCAAGCAGAATAAGCGCGACAAACGGTTTAAGCAACACGG----------------------TATAACCAGGGGTG--------------------------------------------------------------------------------------------GTCCGGGTTTAAGTAGAAGTGTAAGT------AACCACAAGTCAAGATCCAATGTGCAGCAG---------------------------ACTAGTCCAGTACGCACGCGCCGAAAT-----------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................AGAATAAGCGCGACAAACGG.....................................................................................................................................................................................................................................................................................................2011.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................AGTCCAGTACGCACGCGCCG.......................................2011.001000001
...................................................................................CTAAGTAAACGA------ACATCGATTGTAGC...................................................................................................................................................................................................................................................................................................................................................2611.001100000
...................ATACAGTCGCAAGGATGC---CAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
-GGCGGAAGAGCTGCTCACCTACAGTCGCAAGGATGC---CAGCAATCAGGTTAATACC---ACCAAACAAGATTCC---AATCTAAGCAAACGA------ACACCAGGTGTTGGGCTAG---GCGTTAGGTTAACCAAACACAATAAGCGGGATAAAAGATTCAGACATCATGGGGTAGGTCGGGCAGCGGCAACCGCC-------GG------------------------------------------------------------------------------------------------T--GGGTTAAGTCGAAGCGTTACCAGCAACAACAACAGGCAAAGATCAAATGTGCAACAGGCTGCGGCAGCG---------------GCTAGTTCGGTGAGCTCGCATCGAAAT-----------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCG---------------GCTAGTTCGGTGAGCT..............................................2511.00101
.......................................................................................................................................CCAAACACAATAAGCGGGAT...........................................................................................................................................................................................................................................................................................................2011.00101
...........................................................................................ACGA------ACACCAGGTGTTGGGCTAG---GCG........................................................................................................................................................................................................................................................................................................................................2611.00110
......................CAGTCGCAAGGATGC---CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
................................................................................................................................................................................................................................................................................................................................................................................GCGGCAGCG---------------GCTAGTTCGGTGAGCTCG............................................2711.00101
dp5
-GGCTGAGGAACTGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAATGTCAATACCAAACAAGATTCCCATTCATCCAAAAAGCGA------GCCCCAGCCA---G------------TAGGT---CTCAGCGCAACAGGCAGGGT-------------------------------CAGCAGCACCAGCTGAGCAGGAGTGTGAGCAGC---AGCCACAGTGGCAGCAGTAACCAGAA---GAGATCAGTGCCGCCTGCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------GTCGTGTCGGCGTCGTGTC------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................CCTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...............................................................................................................................................................................................................................................TAACCAGAA---GAGATCAGG..................................................................................................................................................................................................1811.0010100000000
...................................................................................................................................................................................................................................................CAGAA---GAGATCAGTGCCGCCTG..........................................................................................................................................................................................2211.0010000001000
.................................................................................CATCCAAAAAGCGA------GCCCCAGC.........................................................................................................................................................................................................................................................................................................................................................2211.0010010000000
..............................................................................................................................................................................................................................................................................GTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------G........................2411.0010100000000
...............................................................................................................................TAGGT---CTCAGCGCAACAGGCAGGG............................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................................................................................GCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------.........................2611.0010010000000
...................................................................................................................................................GGCAGGGT-------------------------------CAGCAGCACCAGCTGAGCA.........................................................................................................................................................................................................................................................2711.0010000100000
droPer2
-GGCTGAGGAACTGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAATGTCAATACCAAACAAGATTCCCATTCATCCAAAAAGCGA------GCCCCAGCCA---G------------TAGGT---CTCAGCGCAACAGGCAGGGT-------------------------------CAGCAGCACCAGCTGAGCAGGAGTGTGAACAGC---AGCCACAGTGGCAGCAGTAACCAGAA---GAGATCAGTGCCGCCTGCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGAC--------------------GTCGTGTCGGCGTCGTGTC------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................CACCTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2513.003300000
........................GTCGCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2313.003300000
..............................................................................................................................................................................................................................................................................GTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGCGCAGA..............................................2212.002200000
.........................................................................................................................................................................................................AGCAGGAGTGTGAACAGC---........................................................................................................................................................................................................................................1811.001100000
......................................................................................................................................................AGGGT-------------------------------CAGCAGCACCAGCTGAGCA.........................................................................................................................................................................................................................................................2411.001001000
........................GTCGCAAGGATTC---GAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
................CACCTACAGTCGCAAGGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
................CACCTACAGTCGCAAGGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................................GCGGTCAGTAG--------------------------------------------------------------------------------------------------------------------TAGTCCGGC...................................................2011.001100000
..........................................................................................................................................................................................................GCAGGAGTGTGAACAGC---AGC.....................................................................................................................................................................................................................................2011.001100000
................................................................................................................................................................................................................GTGTGAACAGC---AGCCACAGT...............................................................................................................................................................................................................................2011.001001000
droAna3
-GGCCGAGGAGCTTCTCACCTACAGTCGCAAGGACTC---CAGCAAGCAGGTTAA------TAGCAAAAAAGATTCCTCCACTCCCTATAAGCGG------CCGCTCGTGC---GGG----------TAATG--------CGCAGCAATTCAAAT-------------------------------CA------GAAGATTAACAGGAGTATTAGTAGTAGTCATAGTGGTAGCAATAGTAACGGCAGGAAGAGATTGG------TGCGC------GGAACGC--------------------------------------------------------------------------------------------------------------------------------GTCAGAAC-----------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................ACCTACAGTCGCAAGGACTC---C.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................CTC---CAGCAAGCAGGTTAA------TAGC.....................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
..........GCTTCTCACCTACAGTCGCAAGGACTC---CA............................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
........................................................................................................................................................................................................................................................GAAGAGATTGG------TGCGC------GGAACG............................................................................................................................................................................2211.001000010
......................................................................................................................................................CAAAT-------------------------------CA------GAAGATTAACAGGA......................................................................................................................................................................................................................................................2111.001001000
...........................................................................................................................................................................................................................................ATAGTAACGGCAGGAAGAG........................................................................................................................................................................................................1911.001100000
......................CAGTCGCAAGGACTC---CAGCAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
................CACCTACAGTCGCAAGGACTC---C.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................................................................................................................................................................................................................................GAGATTGG------TGCGC------GGAACGC--------------------------------------------------------------------------------------------------------------------------------GTCAGAA....................................2711.001000001
................................................................................................................................................................................................................GTATTAGTAGTAGTCATAGTGGT...............................................................................................................................................................................................................................2311.001000010
.............TCTCACCTACAGTCGCAAGGACTC---CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
droBip1
-GGCCGAGGAGCTTCTCACCTACAGTCGCAAGGACTC---CAGCAAGCAGGTTAA------TAGCAAAAAAGATTCCTCCACTTCCCATAAGCAA------CCACGCGTGC---GGG----------TAATG--------CGCAGCAACTCAAGT-------------------------------CA------GAAGATTAACAGGAGTATTAGTAGTAGTCATAACAGTAGCCAGGGTAACAGCAGGAAGAGATTGG------TGCGC------GGAACGC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
-GGCCGAGGAGCTGCTCACCTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TACCAAACAAGATTCC---ACTTCCAATAGGCGAAAGCAACCCCTGGTGA---GGG----------TGATG--------CGCAGCAAGTCGGCT-------------------------------AA------GAAGCTAAGCAAGAGTATCAGTAGCCAGAGCAACAGTAATAGTGATAGCAAGAA---GAGATCAGCTCTGG---GT------AGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAT-----------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-AGCCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TACCAAACAAGATTCC---AATACCAATAGGCGA------CCAATGGTTA---GGG----------CAAAG--------CGAAGCGACTCAGCT-------------------------------CA------GAAGCTCAGCAGGAGTATCAGTAGT------ACTAGTAGCAACGGCAAGAACAA---GAGATCAGCACCGATGCGG------GGTACTC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-AGCCGAGGAGATGCTTACCTACAGTCGCAAGGATTC---AAGCAATCAGGTTAA------TACCAAACAAGATTCC---ACTTCCAATAAGCGA------CCAGCGGTGA---GGG----------CAAAT--------CGCAGCCGGTCAGCT-------------------------------CA------GAAGCTAAGCCGGAGTGTCAGTAGCCATAGCAACAGTAGCAACGGCAGAAGTAA---GAGATCGGCTCCGATTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------TCCAGAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
-AGCCGAGGAGATGCTCACGTACAGTCGCAAGGATTC---GAGCAATCAGGTTAA------TAACAAACAAGATTCC---ACTTCAAATAAGCGA------CAGTTAGTGA---GGG----------CAAAT--------CGGAGCCGATCAGCT-------------------------------CA------GAAGTTGAGTAGGAGTGTTAGTAGCCATAGCAACAGTAGCAACAGCAGAAGTAA---GAGATCGGCTCCAAGTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAGC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
---CCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAGCAAACAAGATTCC---TCTTCTAATAAGCGA------CCACTGGTGA---GGG----------TAAAT--------CGCAGCAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGTAGCCATAGCAACAGTAGCAACAGTAAAAGTAG---AAGATCGGCTCCGATAAGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAACAGCCTCAATTCAAGTGCTCCCGTCGGGGC------SizeHit CountTotal NormTotal
No Reads
droTak1
---CCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAACAAACAAGATTCC---ACTTCCAATAAGCGA------CCATCGGTGA---GGG----------TAAAT--------CGCAGCAACTCAGCT-------------------------------CA------GAAGCTGACCAGGAGTATCAGTAGCCATAGTAACAGTAGCAACAGCAAGAATAG---GAGATCAGCTCCGATTCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
-AGCCGAGGAGATGCTCACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TAGCAAAAAAGATTCC---ACTTCCAATAAGCGA------CCACTGGTGA---GGG----------TGAAA--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTCAGTAGTCATAGCAACAGTAGTAACAGCAAAAATAA---GAGATCGATTCCGGTCCGG------GGTAATC--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------AAAAT--------CGCAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAACGACCCGT------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................CTACAGTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................24136.00360000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001002020010000000000000000000000000000000000000000201000000000001000000000500000002010000000000100000000000000000000000000000000000000000000000000000000021000000010000000000000004034000000
....................TACAGTCGCAAGGATTC---GAGTAATCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................28114.00140000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001211000000001001000000000000011000000
.......................AGTCGCAAGGATTC---GAGTAATC......................................................................................................................................................................................................................................................................................................................................................................................................................22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022602000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................TCCAATAAGCGA------CGACTGGTGA---GGG----------A......................................................................................................................................................................................................................................................................................................................................26112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................................................................................................TGA---GGG----------AAAAT--------CGCAGAAACTCAGC............................................................................................................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000001000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000413000000000000000000000000
....................TACAGTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................23110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000010100000200000001000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................TTCCAATAAGCGA------CGACTGGTGA---GGG----------A......................................................................................................................................................................................................................................................................................................................................27110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TACAGTCGCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000001000000000000000100000110000000000000000000
..................CCTACAGTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010100001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000
.....................ACAGTCGCAAGGATTC---GAGTAATCAGG...................................................................................................................................................................................................................................................................................................................................................................................................................2718.0080000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000200000000000000000000100000
......................................................................................................................................................................................................................................TAGCAACAACAAGAACAG---TAAATCGGC..................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010102010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AAGCGA------CGACTGGTGA---GGG----------AAAAT--------CGC.......................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000601000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TACCTACAGTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000100000000000000000000000000000000010000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................CTACAGTCGCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000100000000000000
.................................................................................................................................AAT--------CGCAGAAACTCAGCT-------------------------------CA------GAAGC...............................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000300000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................TACAGTCGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100010000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................CGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1816.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000001010000000000000000000000000000
...................CTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000002000000000000
..........................................................................TCC---AATTCCAATAAGCGA------CGACTGGTG........................................................................................................................................................................................................................................................................................................................................................2715.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTACAGTCGCAAGGATTC---GAGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001100000000000
...........................GCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000001000000000000000
...................................................................................................................................................................................................................................CGGTAGCAACAACAAGAACAG---TAAATC.....................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GAACAG---TAAATCGGCAACGACCCGT------G.................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000
...................................................................................TCCAATAAGCGA------CGACTGGTGA---GA..................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GA------CGACTGGTGA---GGG----------AAAAT--------CGC.......................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............TTACCTACAGTCGCAAGGATTC---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001100000000
..................................................................................................................................................................................................GAAGCTGAGCAGGAGTGTTAGCAGC...........................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000000000000
...................CTACAGTCGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTACAGTCGCAAGGATTC---GAGTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................GAACAG---TAAATCGGCAAC...............................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TGCTTACCTACAGTCGCAAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................CA------GAAGCTGAGCAGGAGT....................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................CACCGGTAGCAACAACAAGAA.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...................................................................................TCCAATAAGCGA------CGACTGGTG........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAT--------CGCAGAAACTCAGCT-------------------------------CA------GAAGCT..............................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................ACAAGAACAG---TAAATCGGCAAC...............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................TTCCAATAAGCGA------CGACTGGTGA---GGG----------C......................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GCGA------CGACTGGTGA---GGG----------A......................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.....................................................................................................................................................................................................GCTGAGCAGGAGTGTTAGCAG............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................CT-------------------------------CA------GAAGCTGAGCAGGAGTGTT.................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................................................................TGGTGA---GGG----------AAAAT--------CGCAGAAACTCAGCT-------------------------------............................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCAAGGATTC---GAGTAATCAGGTTAA------TAC......................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................................................................................................................................GTTAGCAGCCATAGCACC..................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CAATAAGCGA------CGACTGGTGA---....................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................ATAAGCGA------CGACTGGTGA---GGG----------AAAAT--------..........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................TTCC---AATTCCAATAAGCGA------CGACT............................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................A---GGG----------AAAAT--------CGCAGAAACTCAGCT-------------------------------CA------....................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................ACAGTCGCAAGGATTC---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................AAT--------CGCAGAAACTCAGCT-------------------------------C...........................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................TCCAATAAGCGA------CGACTGGTGA---....................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................AAGCGA------CGACTGGTGA---GGG----------AAAAT--------C.........................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................GCGA------CGACTGGTGA---GGG----------AAAAT--------CGC.......................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................AAGGATTC---GAGTAATCAGGTTAA------TACC.....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGTCGCAAGGATTC---GAGTAATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TACCTACAGTCGCAAGGATTC---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................................................................................GAGCAGGAGTGTTAGCAGCC..........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droSim2
-AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TGCCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------TAAAT--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAATGACCCGA------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................TTCCAATAAGCGA------CGACTGGTGA---G...................................................................................................................................................................................................................................................................................................................................................2412.00200000002000000000
..........................................................................................................................................................T-------------------------------CA------GAAGCTGAGCAGGAGTGTTAG...............................................................................................................................................................................................................................................2412.00200000000000020000
..........................CGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200010010000000000
..........................................GTAATCAGGTTAA------TGCCA....................................................................................................................................................................................................................................................................................................................................................................................................1812.00202000000000000000
...................CTACAGTCGCAAGGATTC---GAGTAA........................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000002000000
.............................AAGGATTC---GAGTAATCAGGTTAA------TGC......................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000002000000
...................CTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
...........................................................................................GCGA------CGACTGGTGA---GGG----------TAAAT--------CGC.......................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.......................................................................................ATAAGCGA------CGACTGGTGA---GGG----------T......................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
...............................................CAGGTTAA------TGCCAAAACAGATTCC---......................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...........ATGCTTACCTACAGTCGCAAG......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
....................TACAGTCGCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
........................................................................................TAAGCGA------CGACTGGTGA---GGG----------T......................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................................................................................................................CAAGAACAG---TAAATCGGCAATGACC...........................................................................................................................................................................................2511.00101000000000000000
.................................................................................ATTCCAATAAGCGA------CGACTGGT.........................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
...........................GCAAGGATTC---GAGTAATCAGGT..................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
.....................................................................................CAATAAGCGA------CGACTGGTGA---GGG----------TAAA...................................................................................................................................................................................................................................................................................................................................2711.00100000000000001000
.......................................................................................................................................................................................................................................................................GACCCGA------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCC........................................1711.00100000001000000000
...................CTACAGTCGCAAGGATTC---GAGTAATCAG....................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100000000000000
....................................................................................CCAATAAGCGA------CGACTGGT.........................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
............TGCTTACCTACAGTCGCAAGGATTC---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
....................................................................................................................G----------TAAAT--------CGCAGAAATTCAGCT-------------------------------CA------....................................................................................................................................................................................................................................................................2311.00100010000000000000
droSec2
-AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAACAGATTCC---AATTCCAATAAGCGA------CGACTGGTGA---GGG----------TAAAT--------CGCAGAAATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGTCATAGCACCGGTAGCAACAACAAGAACAG---TAAATCGGCAATGACCCGA------GGAAATA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................AATTCCAATAAGCGA------CGACTG...........................................................................................................................................................................................................................................................................................................................................................2111.0010010
.......................AGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................CGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
...........................................................................................................................................................................................................................CATAGCACCGGTAGCAACAAC......................................................................................................................................................................................................................2111.0010010
............................................................................................................TGA---GGG----------TAAAT--------CGCAGAAATTCAGCT-------------------------------............................................................................................................................................................................................................................................................................2611.0010010
.......................................................................................................................................................AGCT-------------------------------CA------GAAGCTGAGCAGGAGTG...................................................................................................................................................................................................................................................2311.0010010
...................................................................................................................................................ATTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGG....................................................................................................................................................................................................................................................2611.0010010
...........................................................................CC---AATTCCAATAAGCGA------CGACTGG..........................................................................................................................................................................................................................................................................................................................................................2411.0011000
droYak3
-AGCGGATGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAAAAGATTCC---ACTTCCAATAAGCGA------ACACTGGTGA---GGG----------TAAAT--------CGGAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCAACGGTAGCAACAAGAA---CAG---TAAATCGGCAACGACTCGA------GGAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGAAC-----------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................TACCTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................25114.0014000000100013
................TACCTACAGTCGCAAGGATTC---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.00201010000000
...................CTACAGTCGCAAGGATTC---GAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................................................................................................................AATCGGCAACGACTCGA------GGAAGC............................................................................................................................................................................2311.00100100000000
.......................................................................................................................................................................................................................................................................GACTCGA------GGAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGA.....................................2011.00100010000000
.......................................................................................................................................................................................................TGAGCAGGAGTGTTAGCAGCCATAGCAAC..................................................................................................................................................................................................................................2911.00100000010000
......................CAGTCGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
................TACCTACAGTCGCAAGGATTC---..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000
..................................TTC---GAGTAATCAGGTTAA------TA.......................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................GAGCAGGAGTGTTAGCAGC...........................................................................................................................................................................................................................................1911.00100000010000
droEre2
-AGCGGAGGAGATGCTTACCTACAGTCGCAAGGATTC---GAGTAATCAGGTTAA------TACCAAAAAAGATTCC---ACTTCCAATAAGCGA------CCACTGGTGA---GGG----------TAAAT--------CGGAGAAACTCAGCT-------------------------------CA------GAAGCTGAGCAGGAGTGTTAGCAGCCATAGCAACGGTAGCAACAACAAAACCAG---TAAATCGGCAACGACTCGA------GGAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGAACAGCCTCAATCAGAGTGTACCAATGGGGTCAGGAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................CTTCCAATAAGCGA------CCACTGGTGA---GGG----------.......................................................................................................................................................................................................................................................................................................................................27115.001500000015
..........................CGCAAGGATTC---GAGTAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000
.....................................................................................................................................................................................................................................................................................GAAGTA--------------------------------------------------------------------------------------------------------------------------------GCCAGAACAGCCTC.............................2011.0010100000
.............................................................................................................GA---GGG----------TAAAT--------CGGAGAAACTC...............................................................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................................................................................CATAGCAACGGTAGCAACAACAAAACCA...............................................................................................................................................................................................................2811.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCTCAATCAGAGTGTACCAAT............2611.0010000100
.........................................................................................................................................................................................................................GCCATAGCAACGGTAGCAACAACAA....................................................................................................................................................................................................................2511.0010001000
..................................................................................................................................................................................................................................................AACCAG---TAAATCGGCAACGACTCGA------..................................................................................................................................................................................2511.0010000100
................TACCTACAGTCGCAAGGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.............................................................................................GA------CCACTGGTGA---GGG----------TAAAT--------CGGA......................................................................................................................................................................................................................................................................................................................2411.0010000100
...............................................CAGGTTAA------TACCAAAAAAGATTCC---AC....................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000

Generated: 05/17/2015 at 11:01 PM