ID:

dwi_4149

 Coordinate:

scf2_1100000014723:722-872 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-10.4 -10.4 -10.1 -10.1

Flybase annnotation

exon [dwil_GLEANR_3004:1]; CDS [Dwil\GK20273-cds]; intron [Dwil\GK20273-in]

Repeatable elements

NameClassFamilyStrand
BEL-1_DWil-LTRLTRPao-
mature
  1. scf2_1100000001138:396-424 +
  2. scf2_1100000002726:3771-3799 +
  3. scf2_1100000001342:1574-1602 -
  4. scf2_1100000003211:952-980 +
  5. scf2_1100000006018:277-305 +
  6. scf2_1100000001107:3581-3609 +
  7. scf2_1100000002192:1266-1294 +
  8. scf2_1100000009172:661-689 +
  9. scf2_1100000004115:1134-1162 -
  10. scf2_1100000011845:132-160 +
  11. scf2_1100000004521:12534174-12534202 +
  12. dwi_4149  scf2_1100000014723:784-812 +
  13. scf2_1100000004664:18987-19015 +
  14. scf2_1100000004956:7786-7814 +
  15. scf2_1100000004956:17134-17162 +
  16. scf2_1100000004962:3629-3657 +
  17. scf2_1100000004968:2479581-2479609 +
  18. scf2_1100000004968:2488506-2488534 +
  19. scf2_1100000010024:1221-1249 +
  20. scf2_1100000010251:660-688 +
star
  1. scf2_1100000001138:458-481 +
  2. scf2_1100000002668:1338-1361 +
  3. scf2_1100000001318:2065-2088 -
  4. scf2_1100000003211:1015-1038 +
  5. scf2_1100000006018:340-363 +
  6. scf2_1100000001107:3643-3666 +
  7. scf2_1100000011551:107-130 +
  8. scf2_1100000004058:1030-1053 -
  9. scf2_1100000009172:723-746 +
  10. scf2_1100000012033:557-580 -
  11. dwi_4149  scf2_1100000014723:847-870 +
  12. scf2_1100000004664:19049-19072 +
  13. scf2_1100000004939:9043-9066 -
  14. scf2_1100000004952:525831-525854 -
  15. scf2_1100000004952:538993-539016 -
  16. scf2_1100000004962:3691-3714 +
  17. scf2_1100000004968:2479643-2479666 +
  18. scf2_1100000004968:2488568-2488591 +
  19. scf2_1100000010024:1283-1306 +
  20. scf2_1100000010251:722-745 +
  21. scf2_1100000007770:621-644 -
  22. scf2_1100000005168:749-772 -
  23. scf2_1100000002694:673-696 -
  24. scf2_1100000014510:203-226 -
  25. scf2_1100000011969:365-388 -
  26. scf2_1100000004968:1299104-1299127 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGATATATAGCAAGTGGTTGGCGGGTGCCAATATCTTCAGGGTCTCGTACGTGAGTAGAATGATTAAAACGCGCGAAAACTTCGTTTTAATTCTATGTTTGATTTATTTAATTCACAAGATATACCGACACACACACGAAATGGTTCGGTTGGAAAAAAGTGACAAATCGCAAAGTATAATATACAGGAGGTGAACGGGTGTTCGGGTGAAAATCTCGATTCAGTATAATGGCGATGCCCATTGAAAAAAA
****************************************************************************************************************............((........(((....((.....((((.......(((......)))......))))...))....)))....))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 V119
head
 M020
head
................................................................................................................TCACAAGATATACCGACACACACACGAAA.............................................................................................................. 29 0 20 0.95 19 19 0 0 0 0
................................................................................................................TCACAAGATATACCGACACACACACG................................................................................................................. 26 0 20 0.95 19 16 3 0 0 0
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGG.................................................... 24 0 20 0.85 17 3 14 0 0 0
................................................................................................................TCACAAGATATACCGACACACACACGA................................................................................................................ 27 0 20 0.70 14 14 0 0 0 0
...................................................TGAGTAGAATGATTAAAACGCGCGA............................................................................................................................................................................... 25 0 20 0.60 12 12 0 0 0 0
..................................................GTGAGTAGAATGATTAAAACGCGCGA............................................................................................................................................................................... 26 0 20 0.60 12 11 1 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTC............................................... 24 0 20 0.55 11 0 11 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTC............................................... 22 0 20 0.50 10 0 10 0 0 0
...............................................................................................................................................................................................................TGAAAATCTCGATTCAGTATAATGGCGA................ 28 0 12 0.50 6 5 1 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTG.................................................. 24 0 20 0.40 8 3 5 0 0 0
...................................................TGAGTAGAATGATTAAAACGCGCGAAA............................................................................................................................................................................. 27 0 20 0.40 8 8 0 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGT................................................. 25 0 20 0.40 8 3 5 0 0 0
.............................................................................................................................................................................AGTATAATATACAGGAGGTGAACGGG.................................................... 26 0 20 0.35 7 2 5 0 0 0
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGCG................. 25 0 12 0.33 4 2 2 0 0 0
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGGCGA................ 27 0 12 0.33 4 2 2 0 0 0
................................................................................................................TCACAAGATATACCGACACACACA................................................................................................................... 24 0 20 0.30 6 3 3 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGG............................................. 24 0 20 0.30 6 4 2 0 0 0
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGTG.................................................. 26 0 20 0.30 6 1 5 0 0 0
......ATAACAAGTGGTTGGCGAG.................................................................................................................................................................................................................................. 19 2 11 0.27 3 0 3 0 0 0
..................................................GTGAGTAGAATGATTAAAACGCGCG................................................................................................................................................................................ 25 0 20 0.25 5 0 5 0 0 0
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGTGT................................................. 27 0 20 0.25 5 2 3 0 0 0
.............................AATATCTTCAGGGTCTCGTACGTG...................................................................................................................................................................................................... 24 0 20 0.25 5 5 0 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGGG............................................ 25 0 20 0.25 5 2 3 0 0 0
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGT................................................... 25 0 20 0.25 5 0 5 0 0 0
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGCGA................ 26 0 12 0.25 3 2 1 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTT................................................ 23 0 20 0.20 4 1 3 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCG.............................................. 23 0 20 0.20 4 1 3 0 0 0
...............................................................................................................................................................................................TGAACGGGTGTTCGGGTGAAAATCTCG................................. 27 0 20 0.20 4 4 0 0 0 0
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCAT......... 29 0 12 0.17 2 2 0 0 0 0
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCA.......... 28 0 12 0.17 2 2 0 0 0 0
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATGCCCAT......... 23 0 12 0.17 2 1 1 0 0 0
..................................................................................................................................................................................................................AAATCTCGATTCAGTATAATGGCGA................ 25 0 12 0.17 2 2 0 0 0 0
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGC.................. 24 0 12 0.17 2 2 0 0 0 0
................................................................................TTCGTTTTAATTCTATGTTTGATT................................................................................................................................................... 24 0 20 0.15 3 3 0 0 0 0
................................................................................................................TCACAAGATATACCGACACACACAC.................................................................................................................. 25 0 20 0.15 3 3 0 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCGGG............................................ 27 0 20 0.15 3 3 0 0 0 0
..................................................GTGAGTAGAATGATTAAAACGCGCGAAA............................................................................................................................................................................. 28 0 20 0.15 3 3 0 0 0 0
.............................AATATCTTCAGGGTCTCGTACGT....................................................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0
...................................................................................................................................................................................ATATACAGGAGGTGAACGGGTGTTC............................................... 25 0 20 0.15 3 0 3 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCG.............................................. 25 0 20 0.15 3 0 3 0 0 0
...............................................................................................................TTCACAAGATATACCGACACACACACGA................................................................................................................ 28 0 20 0.15 3 3 0 0 0 0
........................................................................................................TATTTAATTCACAAGATATACCGACA......................................................................................................................... 26 0 20 0.15 3 3 0 0 0 0
............................................................................................................................................ATGGTTCGGTTGGAAAAAA............................................................................................ 19 0 7 0.14 1 0 0 1 0 0
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGG..................................................... 23 0 20 0.10 2 1 1 0 0 0
..................................................................................................................................................................................AATATTCAGGAGCTGATCGGG.................................................... 21 3 20 0.10 2 0 0 0 2 0
................................................................................................................TCACAAGATATACCGACACACACACGAA............................................................................................................... 28 0 20 0.10 2 0 2 0 0 0
.......................................................TAGAATGATTAAAACGCGCGAAAACT.......................................................................................................................................................................... 26 0 20 0.10 2 1 1 0 0 0
.................................................................................TCGTTTTAATTCTATGTTTGATTTATT............................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
..........CAAGTGGTTGGCGGGTGCCAATA.......................................................................................................................................................................................................................... 23 0 20 0.10 2 0 2 0 0 0
.......TAGCAAGTGGTTGGCGGGTGCCAAT........................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
...............................TATCTTCAGGGTCTCGTACGTGAGTAG................................................................................................................................................................................................. 27 0 20 0.10 2 2 0 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTT................................................ 21 0 20 0.10 2 2 0 0 0 0
........AGCAAGTGGTTGGCGGGTGCCAATA.......................................................................................................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0
............................CAATATCTTCAGGGTCTCGTACGTG...................................................................................................................................................................................................... 25 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................................................................................GGGTGAAAATCTCGATTCAGTATAAT..................... 26 0 12 0.08 1 0 0 0 0 1
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGG................... 24 0 12 0.08 1 1 0 0 0 0
...............................................................................................................................................................................................................TGAAAATCTCGATTCAGTATAATGGCG................. 27 0 12 0.08 1 1 0 0 0 0
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATG.............. 18 0 12 0.08 1 0 1 0 0 0
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGGCG................. 26 0 12 0.08 1 0 1 0 0 0
...................................................................................................................................................................................................................AATCTCGATTCAGTATAATGGCGA................ 24 0 12 0.08 1 0 1 0 0 0
...............................................................................................................................................................................................................TGAAAATCTCGGTTCAGTATAATGGCGA................ 28 1 12 0.08 1 1 0 0 0 0
............................................................................................................................................................................................................................TCAGTATAATGGCGATGCCCATTG....... 24 0 12 0.08 1 0 1 0 0 0
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATGCCCATTG....... 25 0 12 0.08 1 0 1 0 0 0
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCAC......... 29 1 12 0.08 1 1 0 0 0 0
.....................................................................................................................................................................................................................ATTCGATTCAGTATAATGGCGATGCCCAT......... 29 2 14 0.07 1 1 0 0 0 0
......ATAACAAGTGGTTGGCGAGG................................................................................................................................................................................................................................. 20 3 15 0.07 1 0 1 0 0 0
...............................................................................................................................................................................................................TGAAAATCTCGATTCAGTGTAATGGCGA................ 28 1 18 0.06 1 1 0 0 0 0
....AAATAACAAGTGGTTGGC..................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0
.......TAGCAAGTGGTTGGCGGG.................................................................................................................................................................................................................................. 18 0 20 0.05 1 0 1 0 0 0
.......................................................TAGAATGATTAAAACGCGCGAAAACTT......................................................................................................................................................................... 27 0 20 0.05 1 0 0 1 0 0
...................GGCGGGTGCCAATATCTTCAGGGTCT.............................................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
................................................................................................................TCACAAGATATACCGACACACAC.................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................AAAAGTGACAAATCGCAAAGT........................................................................... 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................GATACACCGACACACACACGAAATGC........................................................................................................... 26 2 20 0.05 1 1 0 0 0 0
.................................................................................................................CACAAGATATACCGACACACACACGAA............................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGGGT........................................... 26 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................TACCGACACACACACGAAATGGTTCGGT..................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTAAG............................................. 26 2 20 0.05 1 0 1 0 0 0
................................................................................................................................................ATCGGTTGGTAAAAAGTGG........................................................................................ 19 3 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TCTACAGGAGGTGAACGGGTGTT................................................ 23 1 20 0.05 1 0 1 0 0 0
.................................................................................................................CACAAGATATACCGACACACACAC.................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
......................................................................................................................GATATACCGACACACACACGAAATGGT.......................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCTCA............................................ 27 3 20 0.05 1 0 1 0 0 0
...................................................TGAGTAGAATGATTAAAACGCGCAAAAAC........................................................................................................................................................................... 29 1 20 0.05 1 1 0 0 0 0
..................................................................................CGTTTTAATTCTATGTTTGATTTATT............................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................................AACGGGTGTTCGGGTGAAAATCTC.................................. 24 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGCGAACGGGTG.................................................. 24 1 20 0.05 1 0 1 0 0 0
..............................................................................ACTTCGTTTTAATTCTATGTTTGATT................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.................................................................................................................CACAAGATATACCGACACACACACGA................................................................................................................ 26 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................GATAATATACAGGAGGTGAACGGG.................................................... 24 1 20 0.05 1 0 1 0 0 0
................................ATCTTCAGGGTCTCGTACGTGAG.................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
................................................................................................................TCACAAGATACACCGACACACACACG................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACTGGTG.................................................. 24 1 20 0.05 1 0 1 0 0 0
..................................CTTCAGGGTCTCGTACGTGAGTAGAA............................................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................TCGCAAAGTATAATATACAGGAGGTGA......................................................... 27 0 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................CGCAAAGTATAATATACAGGAGGTGA......................................................... 26 0 20 0.05 1 0 1 0 0 0
................................................................................................................ACACAAGATATACCGACACACACACGA................................................................................................................ 27 1 20 0.05 1 1 0 0 0 0
................................................................................................................TCACAAGATATACCGACACA....................................................................................................................... 20 0 20 0.05 1 1 0 0 0 0
................................................................................................................TCACAAGATATACCGACACACACACTA................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0
...............................................TACGTGAGTAGAATGATTAAAACG.................................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...............................................................................................................TTCACAAGATATACCGACACACAC.................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
...........................CCAATATCTTCAGGGTCTCGTACGTGA..................................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TATACAGGAGGGGAACGGGTGTTC............................................... 24 1 20 0.05 1 0 1 0 0 0
...............................TATCTTCAGGGTCTCGTACGTGAGTT.................................................................................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
....................................TCAGGGTCTCGTACGTGAGTAGAAT.............................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................CAAATCGCAAAGTATAATATACAGGA.............................................................. 26 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................ATACAGGTGGTGCACGGTT................................................... 19 3 20 0.05 1 1 0 0 0 0
..................................................................................................................ACAAGATATACCGACACACACACG................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTG.................................................. 23 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTGT................................................. 24 0 20 0.05 1 1 0 0 0 0
.............................................................................................................AATTCACAAGAGATACCGACACACAC.................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0
................................................................................................................................................................................ATAATATACAGGAGGTGAACGGG.................................................... 23 0 20 0.05 1 1 0 0 0 0
...............................................................................................................................................................................TATAATATACACGAGGTGAACGG..................................................... 23 1 20 0.05 1 0 1 0 0 0
.............................AATATCTTCAGGGTCTCGTACGTGAGT................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
............................................................................................................................................................................AAGTATAATATACAGGAGGTGAACGGG.................................................... 27 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGT................................................... 23 0 20 0.05 1 0 1 0 0 0
...............................................................................................................TTCACAAGATATACCGACACACACACG................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTTA............................................... 27 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCT.............................................. 23 1 20 0.05 1 0 1 0 0 0
.....................................................................CGCGCGAAAACTTCGTTTTAATTC.............................................................................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TATACAGGTGGTGAACGGGTGTTCGG............................................. 26 1 20 0.05 1 0 1 0 0 0
.......TAGCAAGTGGTTGGCGGGTGCCA............................................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................AGTATAATATACAGGAGGTGAACGG..................................................... 25 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................CACACACGAAATGGTTCGGTTGGA................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...............................TATCTTCAGGGTCTCGTACGTGA..................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTGA............................................... 27 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTTG............................................... 27 1 20 0.05 1 0 1 0 0 0
.......................................................................................................................ATATACCGACACACACACGAAATGGT.......................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
............................................................................................................TAATTCACAAGATATACCGACACACACA................................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTGTAA............................................... 26 2 20 0.05 1 1 0 0 0 0
........AGCAAGTGGTTGGCGGGTGCCAATATA........................................................................................................................................................................................................................ 27 1 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................................................TTCGGGTGAAAATCTCGATTCAGTTA........................ 26 2 20 0.05 1 1 0 0 0 0
................................................................................................................TCATAAGATATACCGACACACACACG................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
..........................................................AATGATTAAAACGCGCGAAAACTT......................................................................................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGGACGGGTG.................................................. 21 1 20 0.05 1 0 1 0 0 0
................................ATCTTCAGGGTCTCGTACGTGAGTA.................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
.............................AATATCTTCAGGGTCTCGTACGTGA..................................................................................................................................................................................................... 25 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................ATAATATACAGGAGGTGAACGG..................................................... 22 0 20 0.05 1 1 0 0 0 0
................................................................................................................TCACAGGATATACCGACACACACACG................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTG.................................................. 21 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................TATAATATACAGGATGTGAACGGGT................................................... 25 1 20 0.05 1 0 1 0 0 0
...................................................TGAGTAGAATGATTAAAACGCGCG................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGG.................................................... 22 0 20 0.05 1 0 1 0 0 0

Anti-sense strand reads

GCTATATATCGTTCACCAACCGCCCACGGTTATAGAAGTCCCAGAGCATGCACTCATCTTACTAATTTTGCGCGCTTTTGAAGCAAAATTAAGATACAAACTAAATAAATTAAGTGTTCTATATGGCTGTGTGTGTGCTTTACCAAGCCAACCTTTTTTCACTGTTTAGCGTTTCATATTATATGTCCTCCACTTGCCCACAAGCCCACTTTTAGAGCTAAGTCATATTACCGCTACGGGTAACTTTTTTT
****************************************************............((........(((....((.....((((.......(((......)))......))))...))....)))....))**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
.........................................................................................................................................................................................................AAGCCCACTTTTAGAGCTAAGTCATAT....................... 27 0 12 0.67 8 2 6 0 0
......................................TCCCAGAGCATGCACTCATCTTACT............................................................................................................................................................................................ 25 0 20 0.35 7 7 0 0 0
........................................................................................................................................................CTTTTTTCACTGTTTAGCGTTTCATAT........................................................................ 27 0 4 0.25 1 1 0 0 0
.......................................CCCAGAGCATGCACTCATCTTA.............................................................................................................................................................................................. 22 0 20 0.25 5 5 0 0 0
........................................CCAGAGCATGCACTCATCTTACTAAT......................................................................................................................................................................................... 26 0 20 0.25 5 5 0 0 0
........................................................................................................................................................................................GTCCTCCACTTGCCCACAAGCCCACTTT....................................... 28 0 20 0.25 5 5 0 0 0
.....................................................................................................................................................................................................................AGAGCTAAGTCATATTACCGCTACGGGT.......... 28 0 12 0.17 2 1 1 0 0
......................................................................................................................................GTGCTTTACCAAGCCAACCTTTTTT............................................................................................ 25 0 7 0.14 1 1 0 0 0
.......................................CCCAGAGCATTCACTCATCTTACTAAT......................................................................................................................................................................................... 27 1 20 0.10 2 2 0 0 0
..........................................................................................................................................................................................................AGCCCACTTTTAGAGCTAAGTCATAT....................... 26 0 12 0.08 1 0 1 0 0
...............................................................................................ACAAACTAAATAAATTAAGTGTTCTAT................................................................................................................................. 27 0 12 0.08 1 1 0 0 0
...................................................................................................................................................................................................................TTAGAGCTAAGTCATATTACCGCT................ 24 0 12 0.08 1 1 0 0 0
..........................................................................................................................................................................................................................AAAGTCATATTACCGCTACGGGT.......... 23 1 12 0.08 1 1 0 0 0
...................................................................................................................................................................................................................TTAGAGCTAAGTCATATTACCGCTA............... 25 0 12 0.08 1 1 0 0 0
..................................................................................................................................................................................................................TTTAGAGCTAAGTCATATTACCGCT................ 25 0 12 0.08 1 0 1 0 0
............................................................................................................................................................................................................CCCACTTTTAGAGCTAAGTCATATT...................... 25 0 12 0.08 1 1 0 0 0
.............CACCAACCGCCCACGGTTATAGAAG..................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
............................................................................................................ATTAAGTGTTCTATATGGCTGTGTGT..................................................................................................................... 26 0 20 0.05 1 0 1 0 0
......................................................................................................AAATAAATTAAGTGTTCTAT................................................................................................................................. 20 0 20 0.05 1 1 0 0 0
............................................................................................................................................................TTTCACTGTTTAGCGTTTCATATTAT..................................................................... 26 0 20 0.05 1 1 0 0 0
............TCACCAACCGCCCACGGTTATAGAAGA.................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0
....................................................................................................................TTCTATATGGCTGTGTGTGTGCTTTA............................................................................................................. 26 0 20 0.05 1 0 1 0 0
............................................................................................................................................................TTTCACCGTTTAGCGTTTCATATTAT..................................................................... 26 1 20 0.05 1 0 1 0 0
................TAACCGCCCACGGTTATAGAAGTCCC................................................................................................................................................................................................................. 26 1 20 0.05 1 0 0 0 1
...........................................................................................................................................................................................CTCCACTTGCCCACAAGCCCACTT........................................ 24 0 20 0.05 1 1 0 0 0
..............................................................................................................................................................................................CACTTGCCCACAAGCCCACTTTTAGAGCT................................ 29 0 20 0.05 1 0 1 0 0
......................................TCCCAGAGCATGCACTCATCTTACTAA.......................................................................................................................................................................................... 27 0 20 0.05 1 1 0 0 0
..............................................................................................................TAAGTGTTCTATATGACTGTGTGTGT................................................................................................................... 26 1 20 0.05 1 0 1 0 0
.......................................................................................................................................................................................................ACAAGCCCACTTTTAGAGCTAAGTCAT......................... 27 0 20 0.05 1 1 0 0 0
............TCACCAACCGCCCACAGTTATAGAAGT.................................................................................................................................................................................................................... 27 1 20 0.05 1 0 1 0 0
.................................................................................................................................TGTGTGTGCTTTACCAAGCCAACCTTT............................................................................................... 27 0 20 0.05 1 1 0 0 0
...................................................................................................................ATTCTATATGGCTGTGTGTGTGCTTT.............................................................................................................. 26 1 20 0.05 1 1 0 0 0
.................................AGAAGTCCCAGAGCAGGCACTCATCTT............................................................................................................................................................................................... 27 1 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................ACTTGCCCACAAGCCCACTTTTAGA................................... 25 0 20 0.05 1 1 0 0 0
.........................ACGGTTATAGAAGTCCCAGAGCATGCACT..................................................................................................................................................................................................... 29 0 20 0.05 1 0 0 1 0
...........................GGTTATAGAAGTCCCAGAGCATGCACT..................................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0
..........................................................................CTTTTGAAGCAAAATTAAGAT............................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................................GACCTCCACTTGCCCACAAGCCCACTTT....................................... 28 1 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000014723:672-922 + dwi_4149 CGATATATAGCAAGTGGTTGGCGGGTGCCAATATCTTCAGGGTCTCGTACGTGAGTAGAATGATTAAAACGCGCGAAAACTTCGTTTTAATTCTATGTTTGATTTATTTAATTCACAAGATATACCGACACACACACGAAATGGTTCGGTTGGAAAAAAGTGACAAATCGCAAAGTATAATATACAGGAGGTGAACGGGTGTTCGGGTGAAAATCTCGATTCAGTATAATGGCGATGCCCATTGAAAAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CGATATATAGCAAGTGGTTGGCGGGTGCCAATATCTTCAGGGTCTCGTACGTGAGTAGAATGATTAAAACGCGCGAAAACTTCGTTTTAATTCTATGTTTGATTTATTTAATTCACAAGATATACCGACACACACACGAAATGGTTCGGTTGGAAAAAAGTGACAAATCGCAAAGTATAATATACAGGAGGTGAACGGGTGTTCGGGTGAAAATCTCGATTCAGTATAATGGCGATGCCCATTGAAAAAAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................TCACAAGATATACCGACACACACACGAAA..............................................................................................................29200.9519019000
................................................................................................................TCACAAGATATACCGACACACACACG.................................................................................................................26200.9519016030
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGG....................................................24200.8517030140
................................................................................................................TCACAAGATATACCGACACACACACGA................................................................................................................27200.7014014000
...................................................TGAGTAGAATGATTAAAACGCGCGA...............................................................................................................................................................................25200.6012012000
..................................................GTGAGTAGAATGATTAAAACGCGCGA...............................................................................................................................................................................26200.6012011010
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTC...............................................24200.5511000110
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTC...............................................22200.5010000100
...............................................................................................................................................................................................................TGAAAATCTCGATTCAGTATAATGGCGA................28120.50605010
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTG..................................................24200.40803050
...................................................TGAGTAGAATGATTAAAACGCGCGAAA.............................................................................................................................................................................27200.40808000
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGT.................................................25200.40803050
.............................................................................................................................................................................AGTATAATATACAGGAGGTGAACGGG....................................................26200.35702050
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGCG.................25120.33402020
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGGCGA................27120.33402020
................................................................................................................TCACAAGATATACCGACACACACA...................................................................................................................24200.30603030
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGG.............................................24200.30604020
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGTG..................................................26200.30601050
..................................................GTGAGTAGAATGATTAAAACGCGCG................................................................................................................................................................................25200.25500050
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGTGT.................................................27200.25502030
.............................AATATCTTCAGGGTCTCGTACGTG......................................................................................................................................................................................................24200.25505000
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGGG............................................25200.25502030
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGGGT...................................................25200.25500050
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGCGA................26120.25302010
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTT................................................23200.20401030
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCG..............................................23200.20401030
...............................................................................................................................................................................................TGAACGGGTGTTCGGGTGAAAATCTCG.................................27200.20404000
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCAT.........29120.17202000
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCA..........28120.17202000
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATGCCCAT.........23120.17201010
..................................................................................................................................................................................................................AAATCTCGATTCAGTATAATGGCGA................25120.17202000
.................................................................................................................................................................................................................AAAATCTCGATTCAGTATAATGGC..................24120.17202000
................................................................................TTCGTTTTAATTCTATGTTTGATT...................................................................................................................................................24200.15303000
................................................................................................................TCACAAGATATACCGACACACACAC..................................................................................................................25200.15303000
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCGGG............................................27200.15303000
..................................................GTGAGTAGAATGATTAAAACGCGCGAAA.............................................................................................................................................................................28200.15303000
.............................AATATCTTCAGGGTCTCGTACGT.......................................................................................................................................................................................................23200.15303000
...................................................................................................................................................................................ATATACAGGAGGTGAACGGGTGTTC...............................................25200.15300030
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCG..............................................25200.15300030
...............................................................................................................TTCACAAGATATACCGACACACACACGA................................................................................................................28200.15303000
........................................................................................................TATTTAATTCACAAGATATACCGACA.........................................................................................................................26200.15303000
............................................................................................................................................ATGGTTCGGTTGGAAAAAA............................................................................................1970.14100100
...............................................................................................................................................................................TATAATATACAGGAGGTGAACGG.....................................................23200.10201010
................................................................................................................TCACAAGATATACCGACACACACACGAA...............................................................................................................28200.10200020
.......................................................TAGAATGATTAAAACGCGCGAAAACT..........................................................................................................................................................................26200.10201010
.................................................................................TCGTTTTAATTCTATGTTTGATTTATT...............................................................................................................................................27200.10202000
..........CAAGTGGTTGGCGGGTGCCAATA..........................................................................................................................................................................................................................23200.10200020
.......TAGCAAGTGGTTGGCGGGTGCCAAT...........................................................................................................................................................................................................................25200.10200020
...............................TATCTTCAGGGTCTCGTACGTGAGTAG.................................................................................................................................................................................................27200.10202000
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTT................................................21200.10202000
........AGCAAGTGGTTGGCGGGTGCCAATA..........................................................................................................................................................................................................................25200.10200020
............................CAATATCTTCAGGGTCTCGTACGTG......................................................................................................................................................................................................25200.10202000
............................................................................................................................................................................................................GGGTGAAAATCTCGATTCAGTATAAT.....................26120.08110000
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGG...................24120.08101000
...............................................................................................................................................................................................................TGAAAATCTCGATTCAGTATAATGGCG.................27120.08101000
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATG..............18120.08100010
................................................................................................................................................................................................................GAAAATCTCGATTCAGTATAATGGCG.................26120.08100010
...................................................................................................................................................................................................................AATCTCGATTCAGTATAATGGCGA................24120.08100010
............................................................................................................................................................................................................................TCAGTATAATGGCGATGCCCATTG.......24120.08100010
...........................................................................................................................................................................................................................TTCAGTATAATGGCGATGCCCATTG.......25120.08100010
.....................................................................................................................................................................................................................TCTCGATTCAGTATAATGGCGATGCCCAC.........29120.08101000
.......TAGCAAGTGGTTGGCGGG..................................................................................................................................................................................................................................18200.05100010
.......................................................TAGAATGATTAAAACGCGCGAAAACTT.........................................................................................................................................................................27200.05100100
...................GGCGGGTGCCAATATCTTCAGGGTCT..............................................................................................................................................................................................................26200.05101000
................................................................................................................TCACAAGATATACCGACACACAC....................................................................................................................23200.05101000
...........................................................................................................................................................AAAAGTGACAAATCGCAAAGT...........................................................................21200.05100010
.................................................................................................................CACAAGATATACCGACACACACACGAA...............................................................................................................27200.05101000
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCGGGT...........................................26200.05101000
..........................................................................................................................TACCGACACACACACGAAATGGTTCGGT.....................................................................................................28200.05101000
.................................................................................................................CACAAGATATACCGACACACACAC..................................................................................................................24200.05101000
......................................................................................................................GATATACCGACACACACACGAAATGGT..........................................................................................................27200.05100010
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTGTTCTCA............................................27200.05100010
..................................................................................CGTTTTAATTCTATGTTTGATTTATT...............................................................................................................................................26200.05100010
.................................................................................................................................................................................................AACGGGTGTTCGGGTGAAAATCTC..................................24200.05100010
..............................................................................ACTTCGTTTTAATTCTATGTTTGATT...................................................................................................................................................26200.05101000
.................................................................................................................CACAAGATATACCGACACACACACGA................................................................................................................26200.05101000
................................ATCTTCAGGGTCTCGTACGTGAG....................................................................................................................................................................................................23200.05101000
..................................CTTCAGGGTCTCGTACGTGAGTAGAA...............................................................................................................................................................................................26200.05101000
.......................................................................................................................................................................TCGCAAAGTATAATATACAGGAGGTGA.........................................................27200.05100010
........................................................................................................................................................................CGCAAAGTATAATATACAGGAGGTGA.........................................................26200.05100010
................................................................................................................TCACAAGATATACCGACACA.......................................................................................................................20200.05101000
...............................................TACGTGAGTAGAATGATTAAAACG....................................................................................................................................................................................24200.05101000
...............................................................................................................TTCACAAGATATACCGACACACAC....................................................................................................................24200.05101000
...........................CCAATATCTTCAGGGTCTCGTACGTGA.....................................................................................................................................................................................................27200.05101000
...............................TATCTTCAGGGTCTCGTACGTGAGTT..................................................................................................................................................................................................26200.05100010
....................................TCAGGGTCTCGTACGTGAGTAGAAT..............................................................................................................................................................................................25200.05101000
...................................................................................................................................................................CAAATCGCAAAGTATAATATACAGGA..............................................................26200.05101000
..................................................................................................................ACAAGATATACCGACACACACACG.................................................................................................................24200.05101000
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTG..................................................23200.05101000
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTGT.................................................24200.05101000
................................................................................................................................................................................ATAATATACAGGAGGTGAACGGG....................................................23200.05101000
.............................AATATCTTCAGGGTCTCGTACGTGAGT...................................................................................................................................................................................................27200.05100010
............................................................................................................................................................................AAGTATAATATACAGGAGGTGAACGGG....................................................27200.05100010
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGT...................................................23200.05100010
...............................................................................................................TTCACAAGATATACCGACACACACACG.................................................................................................................27200.05101000
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTTA...............................................27200.05100010
......................................................................................................................................................................................TACAGGAGGTGAACGGGTGTTCT..............................................23200.05100010
.....................................................................CGCGCGAAAACTTCGTTTTAATTC..............................................................................................................................................................24200.05101000
.......TAGCAAGTGGTTGGCGGGTGCCA.............................................................................................................................................................................................................................23200.05101000
.............................................................................................................................................................................AGTATAATATACAGGAGGTGAACGG.....................................................25200.05101000
..................................................................................................................................CACACACGAAATGGTTCGGTTGGA.................................................................................................24200.05101000
...............................TATCTTCAGGGTCTCGTACGTGA.....................................................................................................................................................................................................23200.05100010
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTGA...............................................27200.05101000
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGGTGTTG...............................................27200.05100010
.......................................................................................................................ATATACCGACACACACACGAAATGGT..........................................................................................................26200.05101000
............................................................................................................TAATTCACAAGATATACCGACACACACA...................................................................................................................28200.05101000
..................................................................................................................................................................................AATATACAGGAGGTGAACGGGTGTAA...............................................26200.05101000
........AGCAAGTGGTTGGCGGGTGCCAATATA........................................................................................................................................................................................................................27200.05100010
.........................................................................................................................................................................................................TTCGGGTGAAAATCTCGATTCAGTTA........................26200.05101000
..........................................................AATGATTAAAACGCGCGAAAACTT.........................................................................................................................................................................24200.05101000
................................ATCTTCAGGGTCTCGTACGTGAGTA..................................................................................................................................................................................................25200.05101000
.............................AATATCTTCAGGGTCTCGTACGTGA.....................................................................................................................................................................................................25200.05100100
................................................................................................................................................................................ATAATATACAGGAGGTGAACGG.....................................................22200.05101000
....................................................................................................................................................................................TATACAGGAGGTGAACGGGTG..................................................21200.05100010
...................................................TGAGTAGAATGATTAAAACGCGCG................................................................................................................................................................................24200.05100010
.................................................................................................................................................................................TAATATACAGGAGGTGAACGGG....................................................22200.05100010

Generated: 05/18/2015 at 09:52 AM