ID:

dwi_4096

 Coordinate:

scf2_1100000004968:1036892-1037042 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.1 -26.1 -26.0

Flybase annnotation

exon [dwil_GLEANR_7251:2]; CDS [Dwil\GK23545-cds]; intron [Dwil\GK23545-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-12_DWil-LTRLTRGypsy+
Gypsy-12_DWil-I-intLTRGypsy+
mature
  1. scf2_1100000002534:552-575 +
  2. scf2_1100000013068:603-626 +
  3. scf2_1100000013254:1053-1076 +
  4. scf2_1100000008209:14-37 +
  5. scf2_1100000001783:2335-2358 +
  6. scf2_1100000006015:327-350 +
  7. scf2_1100000002067:1077-1100 +
  8. scf2_1100000011749:256-279 +
  9. scf2_1100000014373:256-279 +
  10. scf2_1100000011926:627-650 +
  11. scf2_1100000004777:239-262 +
  12. scf2_1100000004887:310899-310922 +
  13. scf2_1100000004942:107331-107354 +
  14. scf2_1100000004943:223994-224017 +
  15. scf2_1100000004936:77034-77057 +
  16. scf2_1100000004961:504769-504792 +
  17. scf2_1100000004967:3148813-3148836 +
  18. dwi_4096  scf2_1100000004968:1036902-1036925 +
  19. scf2_1100000012659:639-662 +
  20. scf2_1100000007630:205-228 +
  21. scf2_1100000004943:7221991-7222014 +
star
  1. scf2_1100000013068:674-700 +
  2. scf2_1100000013254:1124-1150 +
  3. scf2_1100000008209:85-111 +
  4. scf2_1100000001783:2406-2432 +
  5. scf2_1100000006015:398-424 +
  6. scf2_1100000002067:1148-1174 +
  7. scf2_1100000011749:327-353 +
  8. scf2_1100000014373:327-353 +
  9. scf2_1100000011926:698-724 +
  10. scf2_1100000004602:16705-16731 +
  11. scf2_1100000004777:310-336 +
  12. scf2_1100000004942:107402-107428 +
  13. scf2_1100000004943:224065-224091 +
  14. scf2_1100000007183:1271-1297 +
  15. scf2_1100000004936:77105-77131 +
  16. scf2_1100000004961:504840-504866 +
  17. scf2_1100000004967:3148884-3148910 +
  18. dwi_4096  scf2_1100000004968:1036973-1036999 +
  19. scf2_1100000009919:1448-1474 +
  20. scf2_1100000007630:276-302 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAGCCAGAATTAAATCAGAAAAATACTAATTAATCCTTATCTTTATTATTTAAAATATAGCTATTTACAACTCAGAAGTGGGATGACCACCCGAAAAGATAAATATTTCGGGACATGGCAGGCCACACGTTCCACATCGAGAACGGCCGCCTCCACGCCCACCGCTGCTGGTGCACCCACTGCTGTGACTCCCGCTGCAGTACCGGCGGCCACTGGAGCCGCCGCTGCAGTACCGAGAGCCGCTGTGCCA
************************************************************........((.((((....)))).))....(((((((.........)))))))...(((.((((....(((((........)))))...)))))))..********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
............................................................GCTATTTACAACTCAGAAGTGGGA....................................................................................................................................................................... 24 0 20 0.35 7 5 2 0 0 0
...................................................................................................................................TCCACATCGAGAACGGCCGCCTCCACG............................................................................................. 27 0 20 0.10 2 2 0 0 0 0
...............................................................................TGGGATGACCACCCGAAAAGATAAATAT................................................................................................................................................ 28 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................GTGACTCCCGCTGCAGTACCG............................................. 21 0 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................TGCTGGTGCACCCACTGCTGT................................................................ 21 0 20 0.05 1 0 1 0 0 0
............................................................................................................................CACACGTTCCACATCGAGAACGGCCGCC................................................................................................... 28 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................GCACCCACTGCTGTGACTCCC......................................................... 21 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................TGTGACTCCCGCTGCAGTACCG............................................. 22 0 20 0.05 1 0 0 0 0 1
.........................................................ATAGCTATTTACAACTCAGAAGTG.......................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CCACATCGAGAACGGCCGCCTC................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
.............................................................................................GAAAAGATAAATATTTCG............................................................................................................................................ 18 0 20 0.05 1 0 1 0 0 0
...........................................................AGCTATTTACAACTCAGAAGTGG......................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................ATGCGGAACCGGCGGCCAC..................................... 19 3 20 0.05 1 1 0 0 0 0
.........................................................ATAGCTATTTACAACTCAGAAGT........................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CCACATCGAGAACGGCCGC.................................................................................................... 19 0 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................CTGCTGTGACTCCCGCTGCA................................................... 20 0 20 0.05 1 1 0 0 0 0
......................................................................................................................................ACATCGAGAACGGCCGCCTCC................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
.......................................................................CTCAGAAGTGGGATGACCACCCGAAA.......................................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
.................................................................TTACAACTCAGAAGTGGGATGACCA................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................TCCACATCGAGAACGGCCGCCTCC................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................ACCGCTGCTGGTGCACCCA....................................................................... 19 0 20 0.05 1 1 0 0 0 0
............................................................................................................................CACACGTTCCACATCGAGA............................................................................................................ 19 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................CTCCACGCCCACCGCTGCTGGT.............................................................................. 22 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................................................................................TGCAGTACCGGCGGCCACTG................................... 20 0 20 0.05 1 0 1 0 0 0
....................................................................CAACTCAGAAGTGGGATGACCACCCGA............................................................................................................................................................ 27 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................CCACACGTTCCACATCGAGAACGGCCG..................................................................................................... 27 0 20 0.05 1 1 0 0 0 0
..............................................................TATTTACAACTCAGAAGTGGGATGACC.................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
......................................................................ACTCAGAAGTGGGATGACCACCCGAAAA......................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................CCACACGTTCCACATCGAG............................................................................................................. 19 0 20 0.05 1 0 1 0 0 0
............................................................GCTATTTACAACTCAGAAGT........................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.....................................................................AACTCAGAAGTGGGATGACCACCCGAAA.......................................................................................................................................................... 28 0 20 0.05 1 0 0 1 0 0
.............................................................CTATTTACAACTCAGAAGTGG......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................................CGAGAACGGCCGCCTCCA............................................................................................... 18 0 20 0.05 1 0 1 0 0 0
............................................................GCTATTTACAACTCAGAAGTG.......................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
......................................................................ACTCAGAAGTGGGATGACCACC............................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0 0
............................................................GCTATTTACAACTCAGAAGTGGGATG..................................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................CTCCACGCCCACCGCCGCTGGT.............................................................................. 22 1 20 0.05 1 0 1 0 0 0
.................................................................................................................................................................................CCACTGCTGTGACTCCCGCT...................................................... 20 0 20 0.05 1 0 0 1 0 0
.........................................................ATAGCTATTTACAACTCAGAAGTGG......................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
....................................................................................................................................CTACATCGAGAACGCCCGCT................................................................................................... 20 3 20 0.05 1 0 0 0 1 0
......................................................................................................................................................................................GCTGTGACTCCCGCTGCAGT................................................. 20 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................CTCCACGCCCACCGCTGCTGG............................................................................... 21 0 20 0.05 1 0 1 0 0 0
............................................................GCTATTTACAACTCAGAAGTGGGAT...................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
.........................................................ATAGCTATTTACAACTCAGAAGTGGG........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
............................................................GCTATTTACAACTCATAAGTGGGA....................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
........................................................................................................................................................................................TGTGACTCCCGCTGCAGTACC.............................................. 21 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................CCGCCGCTGCAGTACCGAGAG........... 21 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

TGTCGGTCTTAATTTAGTCTTTTTATGATTAATTAGGAATAGAAATAATAAATTTTATATCGATAAATGTTGAGTCTTCACCCTACTGGTGGGCTTTTCTATTTATAAAGCCCTGTACCGTCCGGTGTGCAAGGTGTAGCTCTTGCCGGCGGAGGTGCGGGTGGCGACGACCACGTGGGTGACGACACTGAGGGCGACGTCATGGCCGCCGGTGACCTCGGCGGCGACGTCATGGCTCTCGGCGACACGGT
*********************************************************************************************........((.((((....)))).))....(((((((.........)))))))...(((.((((....(((((........)))))...)))))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body
....GGTCTTAATTTAGTCTTTTTATGAT.............................................................................................................................................................................................................................. 25 0 8 0.25 2 2 0 0
....................................................................................................................................GGTGTAGCTCTTGCCGGCGGAGGT............................................................................................... 24 0 20 0.05 1 1 0 0
.....................................................TTTATATCGATAAATGTTGTGTGT.............................................................................................................................................................................. 24 2 20 0.05 1 1 0 0
....................................................................................................................................................GCGGAGGTGCGGGTGGCGACGAC................................................................................ 23 0 20 0.05 1 1 0 0
.............................................................................................................................................................................................................................CGGCCACGTCATGGCTCTCGGCA....... 23 2 20 0.05 1 0 0 1
..........................................AAATAATAAATTTTATATCGATAAAT....................................................................................................................................................................................... 26 0 20 0.05 1 0 1 0
.................................................AAATTTTATATCGATAAATGTTGAGTC............................................................................................................................................................................... 27 0 20 0.05 1 0 1 0
.....................................................TTTATATCGATAAATGTTGAGTCTTC............................................................................................................................................................................ 26 0 20 0.05 1 1 0 0
............................................ATAATAAATTTCATATCGATAAATGT..................................................................................................................................................................................... 26 1 20 0.05 1 1 0 0
................................................................................................................................................................GTAGCGACGACCACGTGG......................................................................... 18 1 20 0.05 1 1 0 0
...........................TTTAAGTAGGAATAGAAAT............................................................................................................................................................................................................. 19 2 20 0.05 1 0 1 0
.....................................................TTTATATCGATAAATGTTGAGTCTT............................................................................................................................................................................. 25 0 20 0.05 1 1 0 0
......................................................................................................................CGTCCGGTGTGCAAGGTGTAG................................................................................................................ 21 0 20 0.05 1 0 0 1
.....................................................TTTATATCGATAAATGTTGAGTCTTCAC.......................................................................................................................................................................... 28 0 20 0.05 1 1 0 0
...............................................................................................................................................................................................GGGCGACGTCATGGCCGCCGTT...................................... 22 1 20 0.05 1 0 0 1
.......................................................TATATCGATAAATGTTGAGTCTTCACCC........................................................................................................................................................................ 28 0 20 0.05 1 1 0 0
.....................TTTATGATTAATTAGGAATAGAAAT............................................................................................................................................................................................................. 25 0 20 0.05 1 0 1 0
.............................................TAATAAATTTTATATCGATAAATGT..................................................................................................................................................................................... 25 0 20 0.05 1 0 1 0
.........................................................................................................................CCGGTGTGCGAGGTGTAGCTC............................................................................................................. 21 1 20 0.05 1 1 0 0
....................................................TTTTATATCGATAAATGTTG................................................................................................................................................................................... 20 0 20 0.05 1 1 0 0
........................................................................................................................................................................GGCCACGTGGGTGGCGACACT.............................................................. 21 2 20 0.05 1 1 0 0
......................................................................................................................................................................................CGACACTGAGGGCGACGTCAT................................................ 21 0 20 0.05 1 0 0 1
...........................................................................................................................................CTAGTGCCGGCGGAGCTG.............................................................................................. 18 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004968:1036842-1037092 + dwi_4096 ACAGCCAGAATTAAATCAGAAAAATACTAATTAATCCTTATCTTTATTATTTAAAATATAGCTATTTACAACTCAGAAGTGGGATGACCACCCGAAAAGATAAATATTTCGGGACATGGCAGGCC-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------ACGCCC------------ACCGCTGC---------TGGT------------GC---A--------------------------------------------------CCCACTGCT------------GTGACTCCCGCT---GCAGT-------------------ACC---------------G-GCGGCC-ACTGGAGCCGCCGCTGCA-----------GTACCGAGAGCCGCT--------------------GTGCCA
droVir3 scaffold_12963:8026097-8026249 - CCAC------------------------------------------------------------------------------------CCGAG-------------------------AAGG-------------GCAAAAAG-TTGCTCATG-----------------------------AAAGGCGAAA-------------CACTGGCGGCGGCCACCACAGCGGCCATTTGGCTTTT-------GGC------------CTGC-----T------------------------------------C-----------------------------------------------------------------TGT------------G--------GGTGACTGCGCCGCAGC---------------TGGCGGCAGACTGTTGCCAGCTGCACT-----------GGATCC--GCCAGTC--------------------ACGCCC
droMoj3 scaffold_6680:16309318-16309450 - TTTT------------------------------------------------------------------------------------GGGCC----------------------GGGGAGC-------------GGCCGACG-TTGTACCTG---------------------------------------------------------------------------------------------------------------------------A---------------------------AGT--------------T-----CGTTTACTCCCAACAACAGCAACAGCGCC------AA---------CAACACTTACTCGAGCAGCAGCGG-------------------C---------------G-GCGGCA-GCGGCAGCGGCCGCAGCA-----------GCGACAACAACAG---------------------------C
droGri2 scaffold_14853:217362-217495 - TGGT------------------------------------------------------------------------------------AGACC-------------------------ATCTT---------------------TTGC-------------------------------G-AGTC-C-AAATCGAGCAG-CTCGCC-------------------------------------------ACTG------------GCAACGGT---------TGGC---G---T---CGC---CGTC--------------GGCAA-CTC----------------------CT-----------------------CCTTGATGTA---GGGTGAG-------------------C---------------T-GGCGTA-GCCGC------TGCTGCC-----------ATACGGCGACTCTCC--------------------GTGCAC
dp5 Unknown_singleton_208:8199-8329 + CGAG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCAACGT------------CG-CTCCCCTTTGAGCAGGCTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--ACCACCGCTGCCACCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCCACCACCGCTGCC-------------------------A--------------------CCACCG
droPer2 scaffold_1514:1239-1380 + CGAG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCTACGT------------CG-CTCCACTTTAAGCAGGCTCCATGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--------------ACCA---------------------------------CCGCT----------------------------------GCCAGTACTTCTGCCGCCGC---------------T-GCCGCC-ACCGCTGCCGCCACCGCT-----------GCCGCCACCGCTGCC--------------------GCCACC
droAna3 scaffold_13082:976595-976750 + AAAA------------------------------------------------------------------------------------TATAT-------------------------ATATT---------------------TTAT-------------------------------T-GATCGGCCAATCAGGCGTTTTCTGC---------------------ACCGGCA-------AGTTCGGCACCA-------TCTTC-----TGCTGGGAG------------------TTC---AGCT-----------------------------------------------------GCTG---------CTGGTTCAGCTGCT---GCTGG-------------------TTC---------------A-GCTGCT-GCTGGTTTAGATGCGGCT-----------GGTTCAGCTACTGCT--------------------GGTCCT
droBip1 scf7180000395360:10880-11008 + CGTA------------------------------------------------------------------------------------GCGGG-----------------------------------CCT-----------------C------------------------CTTCTCGAG-TC-G-CA--------------------------------------GCTGGCGCTCCA-------GCTCCT------------GCCG-----------------------------------------------------------------------------------------CCGCTGACGCTCGATCT-GCACAGCTGCC---GCGGT---------------------T---------------T-GTTGCT-GCTGCTGGAGTTGCAGCT-----------GCTCCCGCTGGAGCT--------------------GCTCCC
droKik1 scf7180000302230:523308-523424 + CCAC------------------------------------------------------------------------------------GCTGA-------------------------GACGCCTGCGG-----CGGC-------------------------C--GCCCATCCG------------------------------------------------------------------C-------T------------------G---------------C------------ATCATCACCTGCAC-----------------------------------------------------------------CATCACCCACT---GCAGC-------------------ACC---------------T-GCAGCA-CTTGCAGCACGCGCAGCA-----------TCACCCCCCGCCGCT--------------------GCAGCA
droFic1 scf7180000453812:1112654-1112814 + TAAT------------------------------------------------------------------------------------CACCGGATAAGTGAAAAGCTCCGCAAAAGGGC---AA-------------ACGAGTTTAACCGTGAGAGAGGCCTGAA-------ACT----------------------------------------------------AGAAGGAC--------------------------------ATGGA---------ACCTGCAG---CGGCACC---AGCA--------------C-----CTG----------------------CT------------------------TCTGCCCCA---GT--------------------------------------------GGCA-ACGCCTGTGGCCCATGCA-----------GCAGCAGCTCCTCCT--------------------GTGCAA
droEle1 scf7180000491194:515664-515791 + GGCC------------------------------------------------------------------------------------AGTCG---------------------------------------------------CTTCACT--------------------------------------------------------------------------GCGTCCGGCAGCGCCTT-------GGC------------CAGC-----GCCGAGTGCTGGT---GCTGCTGGCGC---AGGA--------------A-----GTG----------------------CTGCTGCTGGAA---------------------------C--------------------------------------------TGCA-TCTGCTGCAGCTGCTGCA-----------GCTGCAAGTGCTGCT--------------------GCATCT
droRho1 scf7180000779333:292997-293119 + GCCG------------------------------------------------------------------------------------CCGCT------------------------------------------------------------------------------TCCGC-------------------------------------------------------------------------C------------------GGAGG------------------------ACC---AGCC--GCCTCCACTGCCACCA------------------------------------------------------CCGCC-------------GCCAGAGGACCAGCCGCTGCTGATCTTGCTGGGCCA-GGCGGA-GGATC------CGCCGCC-----------GGAGGACCAACCGCC--------------------GGAGCC
droBia1 scf7180000301715:109358-109469 - CATT------------------------------------------------------------------------------------GTGCC-----------------------------------CGG-----------------C------------------------CGTCGAGGA-GT-A-CA------------------------------------------------------------------------------GATCC---------TGGTGAAG---C---TGC---TGCT--------------------------------------------------------------------GCTGCTGCTGTT---GGGC----------------------C---------------A-GCGCC-----------ACATTGGCAGCGGCGCTGCTCAGTAGGGCCATCTT--------------------GCTGCC
droTak1 scf7180000415141:5646-5762 + CCGC------------------------------------------------------------------------------------CTTGA-----------------------------------AGGCCT-----------------------------------------G----------C--------------------------------------GCCAACTTGCCCTGCGC-------GGCCGCCGCCGCCGCC-----TGGCTGG---------------------------GAT--------------G-----CAG----------------------CTTCATGTCCGA---------------------------G--------------------------------------------GGCG-ACT---GCTGCGGCGGCA-----------GGACCTTCTGGTGCT--------------------GCTGCG
droEug1 scf7180000409110:929488-929586 - CCGC------------------------------------------------------------------------------------TAGCA-----------------------------------CCACCA-----------------------------------------C----------C--------------------------------------ACCGCTTGAACCACCGC-------CGCC------------------------------------G---C---CGC---TGCC--------------GCCAGC---------------------------------------------------------------------A-----------------------------------------CC-ACCACCACCGCACTCGCCGCCCC-------ATGGATCACAAGAC--------------------GCATCA
dm3 chr3R:15836215-15836363 - CGGT------------------------------------------------------------------------------------CCATA-----------------------------------TC--------------TTTTCCCTCAAGGAGGCCTGCT-------CCT----------------------------------------------------GCTGCGAATTTCCC-------T------------------G---------------C---TG---T---TGC---TGCT--------------GCGGAT--T----------------------------------------------GCCCTGCTGCT---GCGGATT-----------------------------------------CG-ACTGTTGTCCTACTTGTT-----------GTTGCTGCTGCTGCGGATTAGACATGTTGCCGGCATTGCTA
droSim2 x:8608814-8608921 - GCTG------------------------------------------------------------------------------------CTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------GCACTT------------------------------------------GGTGC---TGCT--------------G-----GTG----------------------CTTCTGCTGCTG---------TTGCACCTGCTGCA---GCACC-------------------ACC---------------G-CCGCCT-GTTGCTGCTGGTGCTGCT-----------GTTAAGGGGGCTGCT--------------------GAGCTA
droSec2 scaffold_9:2253159-2253271 + CCAC------------------------------------------------------------------------------------GTCCT-----------------------------------CCT-----------------------------------------CCGC----------C--------------------------------------GCGACCGCCGCCTCCAC-------GGCC------------------------------------G---C---CGC---CACC--------------GCGACC---------------------------T---------------------CCGCCGCCGCC---ACGTCCT-------------------C---------------C-GAAG-------GCACCACGACCGCC-----------GCCGCCACCACCACC--------------------GCGACC
droYak3 3R:570557-570676 - CACA------------------------------------------------------------------------------------GTCGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AGCC--------------GCCGCC------------------------------------------------ACCACCGACGCA---GCAGCAA-------------------C---------------A-GGAGCA-GCCGCAGACGCCAGAGCC-----------GCAACACCGAGAGAT--------------------GCCGCA
droEre2 scaffold_4690:6767596-6767693 - GCTC------------------------------------------------------------------------------------CTGTG-----------------------------------CC----------------------------------------------------------------------------------------------------CGCT----------------------------------GCTGC---------AGAT------------GC---GG-----------------------------------------------CTGC------TG---------CTGCGCTTGTTGCT---GCACCAG-------------------C-------------------TGCA-CCAGCTGCCGCCGCGGCA-----------GTGGCTGGCGGGGAT--------------------GCGG-A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
ACAGCCAGAATTAAATCAGAAAAATACTAATTAATCCTTATCTTTATTATTTAAAATATAGCTATTTACAACTCAGAAGTGGGATGACCACCCGAAAAGATAAATATTTCGGGACATGGCAGGCC-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------ACGCCC------------ACCGCTGC---------TGGT------------GC---A--------------------------------------------------CCCACTGCT------------GTGACTCCCGCT---GCAGT-------------------ACC---------------G-GCGGCC-ACTGGAGCCGCCGCTGCA-----------GTACCGAGAGCCGCT--------------------GTGCCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................GCTATTTACAACTCAGAAGTGGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.35705020
.................................................................................................................................................TCCACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------ACG.....................................................................................................................................................................................................................................................................27200.10202000
...............................................................................TGGGATGACCACCCGAAAAGATAAATAT....................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000
.......................................................................................................................................................................................................................................................................................................................................................................................GTGACTCCCGCT---GCAGT-------------------ACC---------------G-.............................................................................21200.05100010
..............................................................................................................................................................................................................................................................................TGC---------TGGT------------GC---A--------------------------------------------------CCCACTGCT------------GT......................................................................................................................................21200.05100010
............................................................................................................................C-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------AACGGCCGCC..................................................................................................................................................................................................................................................................................28200.05101000
..........................................................................................................................................................................................................................................................................................................GC---A--------------------------------------------------CCCACTGCT------------GTGACTCCC...............................................................................................................................21200.05101000
..........................................................................................................................................................................................................................................................................................................................................................................T------------GTGACTCCCGCT---GCAGT-------------------ACC---------------G-.............................................................................22200.05100001
.........................................................ATAGCTATTTACAACTCAGAAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
..................................................................................................................................................CCACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTC................................................................................................................................................................................................................................................................................22200.05101000
.............................................................................................GAAAAGATAAATATTTCG................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010
...........................................................AGCTATTTACAACTCAGAAGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.........................................................ATAGCTATTTACAACTCAGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05100010
..................................................................................................................................................CCACATC---------------------------------G-AG-------------------------------------AACGGCCGC...................................................................................................................................................................................................................................................................................19200.05100001
......................................................................................................................................................................................................................................................................................................................................................................CTGCT------------GTGACTCCCGCT---GCA......................................................................................................................20200.05101000
....................................................................................................................................................ACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------........................................................................................................................................................................................................................................................................21200.05101000
.......................................................................CTCAGAAGTGGGATGACCACCCGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................26200.05110000
.................................................................TTACAACTCAGAAGTGGGATGACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.................................................................................................................................................TCCACATC---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------........................................................................................................................................................................................................................................................................24200.05101000
.........................................................................................................................................................................................................................................................................ACCGCTGC---------TGGT------------GC---A--------------------------------------------------CCCA.........................................................................................................................................................19200.05101000
............................................................................................................................C-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------A...........................................................................................................................................................................................................................................................................................19200.05100010
............................................................................................................................................................................................................................................CTCC-------ACGCCC------------ACCGCTGC---------TGGT------------.....................................................................................................................................................................................................................22200.05100010
..................................................................................................................................................................................................................................................................................................................................................................................................T---GCAGT-------------------ACC---------------G-GCGGCC-ACTG..................................................................20200.05100010
....................................................................CAACTCAGAAGTGGGATGACCACCCGA................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05110000
...........................................................................................................................CC-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------AACGGCCG....................................................................................................................................................................................................................................................................................27200.05101000
..............................................................TATTTACAACTCAGAAGTGGGATGACC......................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
......................................................................ACTCAGAAGTGGGATGACCACCCGAAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................28200.05110000
...........................................................................................................................CC-------------ACACG-TTCCACATC---------------------------------G-AG-------------------------------------............................................................................................................................................................................................................................................................................................19200.05100010
............................................................GCTATTTACAACTCAGAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100010
.....................................................................AACTCAGAAGTGGGATGACCACCCGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................28200.05110000
.............................................................CTATTTACAACTCAGAAGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................C---------------------------------G-AG-------------------------------------AACGGCCGCCTCC-------A.......................................................................................................................................................................................................................................................................18200.05100010
............................................................GCTATTTACAACTCAGAAGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
......................................................................ACTCAGAAGTGGGATGACCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
............................................................GCTATTTACAACTCAGAAGTGGGATG.........................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
...................................................................................................................................................................................................................................................................................................................................................................CCACTGCT------------GTGACTCCCGCT---.........................................................................................................................20200.05110000
.........................................................ATAGCTATTTACAACTCAGAAGTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
........................................................................................................................................................................................................................................................................................................................................................................GCT------------GTGACTCCCGCT---GCAGT-------------------.................................................................................................20200.05101000
............................................................................................................................................................................................................................................CTCC-------ACGCCC------------ACCGCTGC---------TGG..................................................................................................................................................................................................................................21200.05100010
............................................................GCTATTTACAACTCAGAAGTGGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
.........................................................ATAGCTATTTACAACTCAGAAGTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
..........................................................................................................................................................................................................................................................................................................................................................................T------------GTGACTCCCGCT---GCAGT-------------------ACC---------------...............................................................................21200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGCTGCA-----------GTACCGAGAG...............................21200.05100100
droVir3
CCAC------------------------------------------------------------------------------------CCGAG-------------------------AAGG-------------GCAAAAAG-TTGCTCATG-----------------------------AAAGGCGAAA-------------CACTGGCGGCGGCCACCACAGCGGCCATTTGGCTTTT-------GGC------------CTGC-----T------------------------------------C-----------------------------------------------------------------TGT------------G--------GGTGACTGCGCCGCAGC---------------TGGCGGCAGACTGTTGCCAGCTGCACT-----------GGATCC--GCCAGTC--------------------ACGCCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TTTT------------------------------------------------------------------------------------GGGCC----------------------GGGGAGC-------------GGCCGACG-TTGTACCTG---------------------------------------------------------------------------------------------------------------------------A---------------------------AGT--------------T-----CGTTTACTCCCAACAACAGCAACAGCGCC------AA---------CAACACTTACTCGAGCAGCAGCGG-------------------C---------------G-GCGGCA-GCGGCAGCGGCCGCAGCA-----------GCGACAACAACAG---------------------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................................................................................................................CCTG---------------------------------------------------------------------------------------------------------------------------A---------------------------AGT--------------T-----CGTTTACTCCC.............................................................................................................................................................................2011.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGG-------------------C---------------G-GCGGCA-......................................................................19200.051000010
...................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCGG-------------------C---------------G-GCGGCA-GC....................................................................20200.051000010
droGri2
TGGT------------------------------------------------------------------------------------AGACC-------------------------ATCTT---------------------TTGC-------------------------------G-AGTC-C-AAATCGAGCAG-CTCGCC-------------------------------------------ACTG------------GCAACGGT---------TGGC---G---T---CGC---CGTC--------------GGCAA-CTC----------------------CT-----------------------CCTTGATGTA---GGGTGAG-------------------C---------------T-GGCGTA-GCCGC------TGCTGCC-----------ATACGGCGACTCTCC--------------------GTGCACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
CGAG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCAACGT------------CG-CTCCCCTTTGAGCAGGCTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--ACCACCGCTGCCACCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCCACCACCGCTGCC-------------------------A--------------------CCACCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------......................................................................................................................................................................................................................22524.00120011540100000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTG...............................................................................................................................................................................................................................................21513.806906900000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------C.....................................................................................................................................................................................................................2354.002002000000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---................................................................................................................................................................................................................2552.601301200001000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CG....................................................................................................................................................................................................................2452.401201200000000
.................................................................................................................................................................TCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------......................................................................................................................................................................................................................2151.6080800000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGC.................................................................2471.2990810000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-G.....................................................................2071.2990900000000
.................................................................................................................................................................TCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTG...............................................................................................................................................................................................................................................2051.2060600000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTG..................................................................2371.1480800000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGC........................................................................2560.8350500000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------C..........................................................................2360.8350230000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GC....................................................................2170.7150500000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------...........................................................................2260.5030300000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCT...................................................................2270.4330300000000
...........................................................................................TC-------------------------GCCGCCAACGT------------CG-CTCCCCTTTGA....................................................................................................................................................................................................................................................................................................................................................................2670.4330000000030
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCT................................................................................................................................................................................................................................................2050.4020200000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GC.................................................................................................................................................................................................................................................1950.4020200000000
.................................................................................................................................................................TCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------C.....................................................................................................................................................................................................................2250.4020200000000
...................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGC........................................................................2460.3320200000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CG.........................................................................2460.3320200000000
.............................................................................................................................................................................................................................................................................................................................TGCCACCA------------------------------------------------------CCGCT-------------GCCAGTACTTC.......................................................................................................2460.3320110000000
..............................................................................................................................................................................................................................................................................................................................................................................................CT-------------GCCAGTACTTCTGC-------------------------CGCC-......................................................................2070.2920200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTACTTCTGC-------------------------CGCC-GCTG..................................................................2270.2920200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAGTACTTCTGC-------------------------CGCC-GCTGC.................................................................2170.2920200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTACTTCTGC-------------------------CGCC-GCTGC.................................................................2370.2920200000000
......................................................................................................................GCCGCCAACGT------------CG-CTCCCCTT.......................................................................................................................................................................................................................................................................................................................................................................2170.2920110000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTT..................................................................2370.2920200000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGTT................................................................2580.2520200000000
......................................................................................................................................................................CCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--A.........................................................................................................................................................................................................2440.2510100000000
.....................................................................................................................................................................TCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--AC........................................................................................................................................................................................................2640.2510100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCTGC-------------------------CGCC-GCTGCCACCA............................................................2350.2010100000000
..................................................................................................................................................................CCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------......................................................................................................................................................................................................................2050.2010100000000
.................................................................................................................................................................TCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---................................................................................................................................................................................................................2450.2010100000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGT------------------------......................................................................................................................................................................................................................2250.2010100000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------A.....................................................................................................................................................................................................................2350.2010100000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTA...............................................................................................................................................................................................................................................2150.2010100000000
.............................................................................................................................................CG-CTCCCCTTTGAGCAGGCTCCATCCA......................................................................................................................................................................................................................................................................................................................................................2750.2010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGC-------------------------CGCC-GCTGCCACCACCGCTG......................................................2350.2010100000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TG..............................................................................................................................................................................................................2750.2010100000000
..................................................................................................................................................CCCCTTTGAGCAGGCTCCATCCACC....................................................................................................................................................................................................................................................................................................................................................2550.2010100000000
....................................................................................................................................................................ATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TG..............................................................................................................................................................................................................2350.2010100000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTG.....................................................................................................2160.1710100000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------AA.........................................................................2460.1710100000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCCA...............................................................2660.1710100000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTA.....................................................................................................2160.1710100000000
..................................................................................................................................................................................................................................................................................................................................CCA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGCC-......................................................................2660.1710100000000
...................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGCC-G.....................................................................2660.1710100000000
.............................................................................................................................................................................................................................................................................................................................TGCCACCA------------------------------------------------------CCGCT-------------GCCAGTACTT........................................................................................................2360.1710100000000
...................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------CGT........................................................................2460.1710100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCTGC-------------------------CGCC-GCTGCCAC..............................................................2160.1710100000000
................................................................................................................................................................CTCCATCCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------AA....................................................................................................................................................................................................................2460.1710100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTACTTCTGC-------------------------CGCC-GCTGCCA...............................................................2560.1710100000000
...................................................................................................................................................................................................................................................................................................................................CA------------------------------------------------------CCGCT-------------GCCAGTACTTCTGC-------------------------C..........................................................................2260.1710100000000
..............................................................................................................................CGT------------CG-CTCCCCTTTGAGCAGG...............................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
..........................................................................................................................CCAACGT------------CG-CTCCCCTTTGAGCAGG...............................................................................................................................................................................................................................................................................................................................................................2570.1410000001000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCTT...............................................................2670.1410100000000
......................................................................................................................GCCGCCAACGT------------CG-CTCCC..........................................................................................................................................................................................................................................................................................................................................................................1870.1410100000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCT-------------GCCAGTACTTCTGC-------------------------CGCC-......................................................................2170.1410100000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCT-------------GCCAGTACTTCTGC-------------------------CGCC-G.....................................................................2270.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCT................................................................2570.1410010000000
...........................................................................................TC-------------------------GCCGCCAACGT------------CG-CTCCCCTTTG.....................................................................................................................................................................................................................................................................................................................................................................2570.1410100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACTTCTGC-------------------------CGCC-GCTGC.................................................................2270.1410100000000
...........................................................................................TC-------------------------GCCGCCAACGT------------CG-CTCCCC.........................................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
...........................................................................................................................................................................................................................................................................................................................................................................................CCGCT-------------GCCAGTACTTCTGC-------------------------CGC........................................................................2270.1410100000000
CGAG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCAACGT------------C.................................................................................................................................................................................................................................................................................................................................................................................2170.1410100000000
..AG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCAACGT------------CG-CTCC...........................................................................................................................................................................................................................................................................................................................................................................2470.1410100000000
...........................................................................................TC-------------------------GCCGCCAACGT------------CG-CTCCCCT........................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
......................................................................................................................GCCGCCAACGT------------CG-CTCCCCTTT......................................................................................................................................................................................................................................................................................................................................................................2270.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCA...................................................................2270.1410100000000
...............................................................................................................................GT------------CG-CTCCCCTTTGAGCAGG...............................................................................................................................................................................................................................................................................................................................................................2070.1410100000000
............................................................................................................................................................................................................................................................................................................................................................................................CGCT-------------GCCAGTACTTCTGC-------------------------CGCC-G.....................................................................2370.1410100000000
.............................................................................................................................ACGT------------CG-CTCCCCTTTGAGCAGGC..............................................................................................................................................................................................................................................................................................................................................................2370.1410000000100
.........................................................................................GATC-------------------------GCCGCCAACGT------------CG-CT.............................................................................................................................................................................................................................................................................................................................................................................1970.1410010000000
..............................................................................................................................................................................................................................................................................................................................GCCACCA------------------------------------------------------CCGCT-------------GCCAGT............................................................................................................1870.1410100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACTTCTGC-------------------------CGCC-GCTGCC................................................................2370.1410100000000
...............................................................................................................................................................................................................................................................................................................................................................................................T-------------GCCAGTACTTCTGC-------------------------CGCC-GCTGCA................................................................2570.1410100000000
............................................................................................................................................................................................................................................................................................................................................................................................CGCT-------------GCCAGTACTTCTGC-------------------------CGC........................................................................2170.1410100000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGTACTTCTGC-------------------------CGCC-GCTGC.................................................................2070.1410100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACTTCTGC-------------------------CGCC-GCTGT.................................................................2280.1310100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CAGTACTTCTGC-------------------------CGCC-GCTG..................................................................2080.1310100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CCAGTACTTCTGC-------------------------CGCC-GCTG..................................................................2180.1310100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCTGC-------------------------CGCC-GCTGT.................................................................18100.1010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................CT-------------GCCAGTACTTCTGC-------------------------AA.........................................................................18200.1020200000000
......................................................................................................................................................................................................................................................................................................................CCACCGCTGCCACCA------------------------------------------------------CCGCT-------------GCC...............................................................................................................23170.0610010000000
......................................................................................................................................................................................................................................................................................................................CCACCGCTGCCACCA------------------------------------------------------....................................................................................................................................15200.0510000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCGCTGCC-------------------------A--------------------CCA...15200.0510000000001
..........................................................................................................................................................................CTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--A.........................................................................................................................................................................................................20200.0510100000000
droPer2
CGAG------------------------------------------------------------------------------------AGATC-------------------------GCCGCCTACGT------------CG-CTCCACTTTAAGCAGGCTCCATGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--------------ACCA---------------------------------CCGCT----------------------------------GCCAGTACTTCTGCCGCCGC---------------T-GCCGCC-ACCGCTGCCGCCACCGCT-----------GCCGCCACCGCTGCC--------------------GCCACCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GCCAGTACTTCTGCCGCCGC---------------T-GCCGCC-......................................................................2870.141010000
.....................................................................................................................................................................TGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TG..............................................................................................................................................................................................................22200.102110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCCGC---------------T-GCCGCC-ACCGCTGCC.............................................................24110.091010000
.....................................................................................................................................................................TGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGT---................................................................................................................................................................................................................20200.051010000
.....................................................................................................................................................................TGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CG....................................................................................................................................................................................................................19200.051010000
...........................................................................................................................................................................TCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TGCC--------------ACCA---------------------------------C........................................................................................................................................................23200.051010000
..........................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GCCAGTACTTCTGCCGCCGC---------------...............................................................................21200.051010000
......................................................................................................................................................................GCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---TG..............................................................................................................................................................................................................21200.051010000
....................................................................................................................................................................ATGCACCTCTGC----------C---------------------------------------------------------------------------------GCTGC------------------------CGC---................................................................................................................................................................................................................21200.051010000
................................................................................................................................................................CTCCATGCACCTCTGC----------C---------------------------------------------------------------------------------GCTT...............................................................................................................................................................................................................................................21200.051001000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACTTCTGCCGCCGC---------------T-GC...........................................................................18200.051100000
droAna3
AAAA------------------------------------------------------------------------------------TATAT-------------------------ATATT---------------------TTAT-------------------------------T-GATCGGCCAATCAGGCGTTTTCTGC---------------------ACCGGCA-------AGTTCGGCACCA-------TCTTC-----TGCTGGGAG------------------TTC---AGCT-----------------------------------------------------GCTG---------CTGGTTCAGCTGCT---GCTGG-------------------TTC---------------A-GCTGCT-GCTGGTTTAGATGCGGCT-----------GGTTCAGCTACTGCT--------------------GGTCCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................CAATCAGGCGTTTTCTGC---------------------ACC.........................................................................................................................................................................................................................................................................................21100.202020000
........................................................................................................................................................................................................TTCTGC---------------------ACCGGCA-------AGTTCGGCACC...................................................................................................................................................................................................................................................................2460.171010000
..........................................................................................................................................................................................................CTGC---------------------ACCGGCA-------AGTTCGGCAC....................................................................................................................................................................................................................................................................2170.141100000
......................................................................................................................................................................................................TTTTCTGC---------------------ACCGGCA-------AGTTCGGCAC....................................................................................................................................................................................................................................................................2570.141010000
..........................................................................................................................T---------------------TTAT-------------------------------T-GATCGGCCAATCAGG...........................................................................................................................................................................................................................................................................................................................2190.111001000
.......................................................................................................................................................................................TCGGCCAATCAGGCGTTTTCTGC---------------------ACC.........................................................................................................................................................................................................................................................................................2690.111010000
..........................................................................................................................T---------------------TTAT-------------------------------T-GATCGGCCAATCAGGC..........................................................................................................................................................................................................................................................................................................................2290.111000010
droBip1
CGTA------------------------------------------------------------------------------------GCGGG-----------------------------------CCT-----------------C------------------------CTTCTCGAG-TC-G-CA--------------------------------------GCTGGCGCTCCA-------GCTCCT------------GCCG-----------------------------------------------------------------------------------------CCGCTGACGCTCGATCT-GCACAGCTGCC---GCGGT---------------------T---------------T-GTTGCT-GCTGCTGGAGTTGCAGCT-----------GCTCCCGCTGGAGCT--------------------GCTCCCSizeHit CountTotal NormTotal
No Reads
droKik1
CCAC------------------------------------------------------------------------------------GCTGA-------------------------GACGCCTGCGG-----CGGC-------------------------C--GCCCATCCG------------------------------------------------------------------C-------T------------------G---------------C------------ATCATCACCTGCAC-----------------------------------------------------------------CATCACCCACT---GCAGC-------------------ACC---------------T-GCAGCA-CTTGCAGCACGCGCAGCA-----------TCACCCCCCGCCGCT--------------------GCAGCASizeHit CountTotal NormTotal
No Reads
droFic1
TAAT------------------------------------------------------------------------------------CACCGGATAAGTGAAAAGCTCCGCAAAAGGGC---AA-------------ACGAGTTTAACCGTGAGAGAGGCCTGAA-------ACT----------------------------------------------------AGAAGGAC--------------------------------ATGGA---------ACCTGCAG---CGGCACC---AGCA--------------C-----CTG----------------------CT------------------------TCTGCCCCA---GT--------------------------------------------GGCA-ACGCCTGTGGCCCATGCA-----------GCAGCAGCTCCTCCT--------------------GTGCAASizeHit CountTotal NormTotal
No Reads
droEle1
GGCC------------------------------------------------------------------------------------AGTCG---------------------------------------------------CTTCACT--------------------------------------------------------------------------GCGTCCGGCAGCGCCTT-------GGC------------CAGC-----GCCGAGTGCTGGT---GCTGCTGGCGC---AGGA--------------A-----GTG----------------------CTGCTGCTGGAA---------------------------C--------------------------------------------TGCA-TCTGCTGCAGCTGCTGCA-----------GCTGCAAGTGCTGCT--------------------GCATCTSizeHit CountTotal NormTotal
No Reads
droRho1
GCCG------------------------------------------------------------------------------------CCGCT------------------------------------------------------------------------------TCCGC-------------------------------------------------------------------------C------------------GGAGG------------------------ACC---AGCC--GCCTCCACTGCCACCA------------------------------------------------------CCGCC-------------GCCAGAGGACCAGCCGCTGCTGATCTTGCTGGGCCA-GGCGGA-GGATC------CGCCGCC-----------GGAGGACCAACCGCC--------------------GGAGCCSizeHit CountTotal NormTotal
No Reads
droBia1
CATT------------------------------------------------------------------------------------GTGCC-----------------------------------CGG-----------------C------------------------CGTCGAGGA-GT-A-CA------------------------------------------------------------------------------GATCC---------TGGTGAAG---C---TGC---TGCT--------------------------------------------------------------------GCTGCTGCTGTT---GGGC----------------------C---------------A-GCGCC-----------ACATTGGCAGCGGCGCTGCTCAGTAGGGCCATCTT--------------------GCTGCCSizeHit CountTotal NormTotal
No Reads
droTak1
CCGC------------------------------------------------------------------------------------CTTGA-----------------------------------AGGCCT-----------------------------------------G----------C--------------------------------------GCCAACTTGCCCTGCGC-------GGCCGCCGCCGCCGCC-----TGGCTGG---------------------------GAT--------------G-----CAG----------------------CTTCATGTCCGA---------------------------G--------------------------------------------GGCG-ACT---GCTGCGGCGGCA-----------GGACCTTCTGGTGCT--------------------GCTGCGSizeHit CountTotal NormTotal
No Reads
droEug1
CCGC------------------------------------------------------------------------------------TAGCA-----------------------------------CCACCA-----------------------------------------C----------C--------------------------------------ACCGCTTGAACCACCGC-------CGCC------------------------------------G---C---CGC---TGCC--------------GCCAGC---------------------------------------------------------------------A-----------------------------------------CC-ACCACCACCGCACTCGCCGCCCC-------ATGGATCACAAGAC--------------------GCATCASizeHit CountTotal NormTotal
No Reads
dm3
CGGT------------------------------------------------------------------------------------CCATA-----------------------------------TC--------------TTTTCCCTCAAGGAGGCCTGCT-------CCT----------------------------------------------------GCTGCGAATTTCCC-------T------------------G---------------C---TG---T---TGC---TGCT--------------GCGGAT--T----------------------------------------------GCCCTGCTGCT---GCGGATT-----------------------------------------CG-ACTGTTGTCCTACTTGTT-----------GTTGCTGCTGCTGCGGATTAGACATGTTGCCGGCATTGCTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCGGATTAGACATGTT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
GCTG------------------------------------------------------------------------------------CTGCT----------------------------------------------------------------------------------------------------------------------------------------------------------GCACTT------------------------------------------GGTGC---TGCT--------------G-----GTG----------------------CTTCTGCTGCTG---------TTGCACCTGCTGCA---GCACC-------------------ACC---------------G-CCGCCT-GTTGCTGCTGGTGCTGCT-----------GTTAAGGGGGCTGCT--------------------GAGCTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
droSec2
CCAC------------------------------------------------------------------------------------GTCCT-----------------------------------CCT-----------------------------------------CCGC----------C--------------------------------------GCGACCGCCGCCTCCAC-------GGCC------------------------------------G---C---CGC---CACC--------------GCGACC---------------------------T---------------------CCGCCGCCGCC---ACGTCCT-------------------C---------------C-GAAG-------GCACCACGACCGCC-----------GCCGCCACCACCACC--------------------GCGACCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droYak3
CACA------------------------------------------------------------------------------------GTCGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AGCC--------------GCCGCC------------------------------------------------ACCACCGACGCA---GCAGCAA-------------------C---------------A-GGAGCA-GCCGCAGACGCCAGAGCC-----------GCAACACCGAGAGAT--------------------GCCGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GCCGCAGACGCCAGAGCC-----------GCAACACC.................................2811.00101000000000
...................................................................................................................................................................C--ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AGCC--------------GC............................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACGCCAGAGCC-----------GCAACACCG................................2511.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AA-------------------C---------------A-GGAGCA-GCCGCAGACGCCAGA.......................................................2511.00101000000000
.........................................................................................TCGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACA......................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.........................................................................................TCGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACACC....................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGACGCCAGAGCC-----------GCAACACC.................................2611.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA-GCCGCAGACGCCAGAGC.....................................................2111.00100100000000
........................................................................................GTCGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACACC....................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
........................................................................................................................................AC-------------------------C--ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AG..............................................................................................................................................................................................................2411.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................CACCGACGCA---GCAGCAA-------------------C---------------A-GG...........................................................................2111.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................GCAA-------------------C---------------A-GGAGCA-GCCGCAGACGCCAG........................................................2611.00101000000000
..........................................................................................CGC------------------------------CATCGCGGCAGCCAC-------------------------C--ACACC....................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACGCCAGAGCC-----------GCAACACCGA...............................2611.00101000000000
........................................................................................................................................AC-------------------------C--ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AGC.............................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................AGCAA-------------------C---------------A-GGAGCA-GCCGCAGACGTTT.........................................................2611.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCAGAGCC-----------GCAACACCGAGAGA...........................2611.00101000000000
..................................................................................................................................................................................................................................................................................................................................CCGCC------------------------------------------------ACCACCGACGCA---GCAGC....................................................................................................................2270.14101000000000
......................................................................................................................................................................ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AGC.............................................................................................................................................................................................................22160.06101000000000
......................................................................................................................................................................ACACCACCG------------------------------------------------------------------C-------C------------------G---------------C---CG---T---CGC---AG..............................................................................................................................................................................................................21160.06101000000000
droEre2
GCTC------------------------------------------------------------------------------------CTGTG-----------------------------------CC----------------------------------------------------------------------------------------------------CGCT----------------------------------GCTGC---------AGAT------------GC---GG-----------------------------------------------CTGC------TG---------CTGCGCTTGTTGCT---GCACCAG-------------------C-------------------TGCA-CCAGCTGCCGCCGCGGCA-----------GTGGCTGGCGGGGAT--------------------GCGG-ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/18/2015 at 09:36 AM