dwi_4053

CDS [Dwil\GK18594-cds]; CDS [Dwil\GK18594-cds]; exon [dwil_GLEANR_19133:2]; exon [dwil_GLEANR_19133:1]; intron [Dwil\GK18594-in]

##################################################----------------------------------------------------------################################################## TTAATGTGCATTAAGACATTGGGATTGATCCAGTTAAAAGTATCGCATACGTGCCAAAATATATGTGCTGAGATTATTATATTATCAGTCTATATTGACTGATTTTAGCATATCCAGAAAGCAAATGTATACCATCACAACCGACAATGTTCGAAACA ************************************************.............................((..(((((((......)))))))..)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	V119 head
...ATGTGCATTAAGACATTGGGAT.....................................................................................................................................	22	0	9	0.56	5	1	4	0
............................................................ATTTGTGCGGAGATTATTAT..............................................................................	20	2	2	0.50	1	0	0	1
........CATTAAGACATTGGGATTGATCCA..............................................................................................................................	24	0	6	0.33	2	2	0	0
...ATGTGCATTAAGACATTGGGATTG...................................................................................................................................	24	0	9	0.22	2	1	1	0
...ATGTGCATTAAGACATTGGGATT....................................................................................................................................	23	0	9	0.22	2	2	0	0
TTAATGTGCATTAAGACATTGGGATTGA..................................................................................................................................	28	0	9	0.22	2	2	0	0
......TGCATTAAGACATTGGGATTGATCCAGT............................................................................................................................	28	0	5	0.20	1	1	0	0
........CATTAAGACATTGGGATTGATCCAGTT...........................................................................................................................	27	0	6	0.17	1	0	1	0
.........ATTAAGACATTGGGATTGATCCA..............................................................................................................................	23	0	6	0.17	1	1	0	0
........CATTAAGACATTGGGATTGATCCAGT............................................................................................................................	26	0	6	0.17	1	1	0	0
....TGTGCATTAAGACATTGGGATTGA..................................................................................................................................	24	0	9	0.11	1	0	1	0
........CATTAAGACATTGGGATTG...................................................................................................................................	19	0	10	0.10	1	1	0	0
TTAATGTGCATTAAGACATTGGG.......................................................................................................................................	23	0	10	0.10	1	1	0	0
...ATGTGCATTAAGACATTGGG.......................................................................................................................................	20	0	10	0.10	1	1	0	0

AATTACACGTAATTCTGTAACCCTAACTAGGTCAATTTTCATAGCGTATGCACGGTTTTATATACACGACTCTAATAATATAATAGTCAGATATAACTGACTAAAATCGTATAGGTCTTTCGTTTACATATGGTAGTGTTGGCTGTTACAAGCTTTGT ************************************************.............................((..(((((((......)))))))..)).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo
......................................................................................TCAGATATAACTGACTAAAATCGTAT..............................................	26	0	7	2.29	16	11	5
............................................................................................ATAACTGACTAAAATCGTATAGGTCTT.......................................	27	0	8	1.00	8	4	4
................................................................................................................AGGTCTTTCGTTTACATATGGTAGT.....................	25	0	1	1.00	1	1	0
..................................................................................................................................TGGTAGTGTTGGCTGTTACAAGCT....	24	0	1	1.00	1	0	1
.............TCTGTAACCCTAACTAGGTCAATT.........................................................................................................................	24	0	6	1.00	6	3	3
..........AATTCTGTAACCCTAACTAGGTCAATT.........................................................................................................................	27	0	6	0.83	5	5	0
.............TCTGTAACCCTAACTAGGTCAATTTT.......................................................................................................................	26	0	6	0.83	5	5	0
................................................................................................CTGACTAAAATCGTATAGGTCTTTCGT...................................	27	0	8	0.63	5	1	4
...TACACGTAATTCTGTAACCCTAACT..................................................................................................................................	25	0	9	0.56	5	5	0
.............TCTGTAACCCTAACTAGGTCAATTT........................................................................................................................	25	0	6	0.50	3	2	1
..........AATTCTGTAACCCTAACTAGGTCAAT..........................................................................................................................	26	0	6	0.50	3	2	1
...................................................................................................ACTAAAATCGTATAGGTCTTTCGT...................................	24	0	9	0.44	4	3	1
......................................................................................TCAGATATAACTGACTAAAATCGT................................................	24	0	7	0.43	3	2	1
............TTCTGTAACCCTAACTAGGTCAATT.........................................................................................................................	25	0	6	0.33	2	2	0
..................................................................................................GACTAAAATCGTATAGGTCTTTCGT...................................	25	0	9	0.33	3	2	1
.ATTACACGTAATTCTGTAACCCTAACT..................................................................................................................................	27	0	9	0.22	2	2	0
AATTACACGTAATTCTGTAACCCTAACT..................................................................................................................................	28	0	9	0.22	2	2	0
.................................................................................................TGACTAAAATCGTATAGGTCTTTCGT...................................	26	0	9	0.22	2	0	2
....ACACGTAATTCTGTAACCCTAACTAGGT..............................................................................................................................	28	0	5	0.20	1	1	0
.............TCTGTAACCCTAACTAGGTCAAT..........................................................................................................................	23	0	6	0.17	1	1	0
.............TTTGTAACCCTAACTAGGTCAATTT........................................................................................................................	25	1	6	0.17	1	1	0
........GTAATTCTGTAACCCTAACTAGGTCAAT..........................................................................................................................	28	0	6	0.17	1	1	0
............TTCTGTAACCCTAACTAGGTCAATTT........................................................................................................................	26	0	6	0.17	1	1	0
........GTAATTCTGTAACCCTAACTAGGTCAATT.........................................................................................................................	29	0	6	0.17	1	1	0
...........ATTCTGTAACCCTAACTAGGTCAA...........................................................................................................................	24	0	6	0.17	1	1	0
........GTAATTCTGTAACCCTAACTAGGTCAA...........................................................................................................................	27	0	6	0.17	1	1	0
................................................................................................CTGACTAAAATCGTATAGGTCTTTCGTT..................................	28	0	7	0.14	1	0	1
......................................................................................TCATATATAACTGACTAAAATCGTAT..............................................	26	1	7	0.14	1	1	0
......................................................................................TCAGATATAACTGACTAAAATCGTA...............................................	25	0	7	0.14	1	1	0
............................................................................................ATAACTGACTAAAATCGTATAGGTCT........................................	26	0	8	0.13	1	0	1
..............................................................................................AACTGACTAAAATCGTATAGGTCTTT......................................	26	0	8	0.13	1	0	1
...TACACGTAATTCTGTAACCCTAACTAG................................................................................................................................	27	0	8	0.13	1	1	0
............................................................................................ATAACTGACTAAAATCGTATAGGTCTTT......................................	28	0	8	0.13	1	0	1
............................................................................................ATAACTGACTAAAATCGTATAGGTCTC.......................................	27	1	8	0.13	1	0	1
......................................................................................TCAGATATAACTGACTAAAATCCTAT..............................................	26	1	8	0.13	1	0	1
............................................................................................ATAACTGACTAAAATCGTATAGGTC.........................................	25	0	8	0.13	1	1	0
..................................................................................................GACTAAAATCGTATAGGTCTTTCG....................................	24	0	9	0.11	1	1	0
...................................................................................................ACTAAAATCGTAGAGGTCTTTCGT...................................	24	1	9	0.11	1	1	0
.....CACGTAATTCTGTAACCCTAACT..................................................................................................................................	23	0	9	0.11	1	0	1
..................................................................................................................................TGGTAGTGTTGGCTGTTAC.........	19	0	10	0.10	1	0	1
...............................................................................................................................AAATGGTAGTGTTGGCTT.............	18	2	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004967:1577433-1577590 +	dwi_4053	TTAATG--------------------------TGCATTAAGACATTGGGATTGATCCAGTTAAAA-GTATCGCATACGTGC--------CAAAATATATGTGCTGAGATTATTATATTATCAGTCTATATTGACTGATTTTAGCATATCCAGAAAGCAAATGTATACCATCACAACCGACAATGTTCGAAACA
droMoj3	scaffold_6414:9935-10087 -		ATAATG---------------------CCATTGAAGTGAAGACATTGGGCATAATTGAGCTGCAG-CGCCAACACACAGGG--------CTCAATTTGAGCATAGAAATT----------GAAAATATTTTGGCAGAGTTTTCGATTTCAAAGCAGCAATTATATACAATCACTTCAGACAATGGCAGAAATG
dp5	XL_group1a:1742359-1742506 +		GCAATA--------------------------TGTGTACAAACTTTAGGCCTGATAGAGCTGAAA-AAATCGCACACATCC--------CAAAACCTCTGTACTGAAATA----------CAGTCCATATTGCATGATTTTGGCATAGCGAAACAACAAATTTATAGCATCACCACAGATAATGGTCGAAACA
droPer2	scaffold_26:1333695-1333842 +		GCAATA--------------------------TGTGTACAAACTTTAGGCCTGATAGAGCTCAAA-ACATCGCACACATCC--------CAAAACCTCTGTACTGAAATA----------CAGTCCATATTGCATGATTTTAGCATAGCGAAACAACAAATTTATAGCATCACCACAGATAATGGTCGAAACA
droAna3	scaffold_13034:368322-368432 +		TAATAAAATAAAATAATATAATCATAACTAATAAAATAAACACTCCGGGAAAGATTGAGCTAAAA-ACGTCCCATACATCG--------CAAAATTTATGCAATGAAATA----------ATGACATTAT---------------------------------------------------------------
droBip1	scf7180000395410:32620-32766 -		GTATTG---------------------------CGATAAGGACCTTGGGCCTTATTAAGTTAAAG-ATGTCGCACACGTCC--------AGAAACAGGTGCTCTGAAATT----------GAGTCACTGATGAGCCAATTCGCGATTCAGAAGCAGCAAATATACACCATAACCACGGACAGTGGACGAAATA
droKik1	scf7180000302695:112457-112606 +		TGAACT-------------------------TTGTGTAAAAACTTTGGGCTTAATAGAGATAAAAAAAATCGCACACATCG--------CAATATATTTGCAATGAAGTA----------AAACCAATATTGAGTGATTCTACCATAAGCAAGAGACGAATTTATACCGTCACGAGTGATAATGGACGAAACA
droFic1	scf7180000451609:2362-2508 +		GTATTG---------------------------CGATAAGGACCTTGGGCCTTATTGAGTTAAAG-ATGTCGCACACGTCC--------AGAAACATTTGCTCTGAAATT----------GAGTCACTGCGGAGCCAATTCGCGATTCAGAAGCAGCAAATATACACCATAACCACGGACAATGGCCGAAATA
droEle1	scf7180000490992:2120-2247 -		AAAATT--------------------------TGCGTTAAAACGTTGGGTCTGATAGAGCTGAAG-GCATCGCA----------------------------CCGAAATT----------AAGTCCAGATTGGCTGATTATTGCATGTCGATAGACAAAATTTATACCATCACGATGCACAACAGTCGAAACG
droBia1	scf7180000302467:8680-8820 +		CAAATC--------------------------GTTTTTCGGACATTGGGGCTGAAAGAGCTCAAA-CAAAGTCACACAGGTATATATAATATTATTTTTTCACAGAATTT----------TTTCCAATATTTTA---------------TGAGTCATACATTTATACTGTTACGACGGACAATGGCGCAAACA
droTak1	scf7180000414970:5073-5220 +		AGAATA--------------------------TCCATTAAAACTTTAGGCCTGATAGAGTTAAAA-AAGTCGCACACATCC--------CAAAATTTGTGCACACAAATT----------AAGTCCATCCTGCGTGATTTTGGAATATCAAAAGATCAAATTTACACCATCACGACGGACAACGGTCGTAACA
droEug1	scf7180000405855:12496-12643 +		GCCATT--------------------------GAGATCAAGACTTTAGGTGTTATTGAGCTGCAT-CAAAAACATACTGGG--------CTCAATTTGAGCAGTGAAATT----------GAAAATATTTTGGCAGATTTTTCAATTTCTAAGCAGCAAATTTATACCATCACGTCCGACAATGGCAAAAATA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TTAATG--------------------------TGCATTAAGACATTGGGATTGATCCAGTTAAAA-GTATCGCATACGTGC--------CAAAATATATGTGCTGAGATTATTATATTATCAGTCTATATTGACTGATTTTAGCATATCCAGAAAGCAAATGTATACCATCACAACCGACAATGTTCGAAACA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...ATG--------------------------TGCATTAAGACATTGGGAT..............................................................................................................................................	22	9	0.56	5	0	1	0	4	0
..................................CATTAAGACATTGGGATTGATCCA.......................................................................................................................................	24	6	0.33	2	0	2	0	0	0
...ATG--------------------------TGCATTAAGACATTGGGATTG............................................................................................................................................	24	9	0.22	2	0	1	0	1	0
...ATG--------------------------TGCATTAAGACATTGGGATT.............................................................................................................................................	23	9	0.22	2	0	2	0	0	0
TTAATG--------------------------TGCATTAAGACATTGGGATTGA...........................................................................................................................................	28	9	0.22	2	0	2	0	0	0
................................TGCATTAAGACATTGGGATTGATCCAGT.....................................................................................................................................	28	5	0.20	1	0	1	0	0	0
..................................CATTAAGACATTGGGATTGATCCAGTT....................................................................................................................................	27	6	0.17	1	0	0	0	1	0
...................................ATTAAGACATTGGGATTGATCCA.......................................................................................................................................	23	6	0.17	1	0	1	0	0	0
..................................CATTAAGACATTGGGATTGATCCAGT.....................................................................................................................................	26	6	0.17	1	0	1	0	0	0
....TG--------------------------TGCATTAAGACATTGGGATTGA...........................................................................................................................................	24	9	0.11	1	0	0	0	1	0
..................................CATTAAGACATTGGGATTG............................................................................................................................................	19	10	0.10	1	0	1	0	0	0
TTAATG--------------------------TGCATTAAGACATTGGG................................................................................................................................................	23	10	0.10	1	0	1	0	0	0
...ATG--------------------------TGCATTAAGACATTGGG................................................................................................................................................	20	10	0.10	1	0	1	0	0	0

droMoj3

ATAATG---------------------CCATTGAAGTGAAGACATTGGGCATAATTGAGCTGCAG-CGCCAACACACAGGG--------CTCAATTTGAGCATAGAAATT----------GAAAATATTTTGGCAGAGTTTTCGATTTCAAAGCAGCAATTATATACAATCACTTCAGACAATGGCAGAAATG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................GCATAATTGAGCTGCAG-CGCC...........................................................................................................................	21	3	1.33	4	0	0	0	0	4	0
.....................................GAAGACATTGGGCATAATTGAGC.....................................................................................................................................	23	2	1.00	2	1	0	0	0	1	0
.................................................................................................................................................TTTCAAAGCAGCAATTATATACAATCAC....................	28	2	1.00	2	1	0	0	0	1	0
............................................TTGGGCATAATTGAGCTGCAG-CGC............................................................................................................................	24	3	1.00	3	3	0	0	0	0	0
................................................GCATAATTGAGCTGCAG-CGCCA..........................................................................................................................	22	3	0.67	2	2	0	0	0	0	0
.............................................TGGGCATAATTGAGCTGCAG-CGCC...........................................................................................................................	24	3	0.67	2	1	0	0	0	1	0
................................................GCATAATTGAGCTGCAG-CGCCAACAC......................................................................................................................	26	3	0.67	2	2	0	0	0	0	0
.............................................TGGGCATAATTGAGCTGCAG-CGC............................................................................................................................	23	3	0.67	2	1	0	0	0	1	0
....................................TGAAGACATTGGGCATAATTGAGC.....................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1
..................................................................................................................................................TTCAAAGCAGCAATTATATACA.........................	22	2	0.50	1	1	0	0	0	0	0
.................................................................................................GAGCATAGAAATT----------GAAAATATTTTG.............................................................	25	2	0.50	1	1	0	0	0	0	0
..................................................................................................AGCATAGAAATT----------GAAAATATTTT..............................................................	23	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................TTTCAAAGCAGCAATTATATACAATCA.....................	27	2	0.50	1	0	0	0	0	0	1
..................................................................................................................................................................TATACAATCACTTCAGACAATGGC.......	24	2	0.50	1	1	0	0	0	0	0
..................................................................................................................................................TTCAAAGCAGCAATTATATACAATC......................	25	2	0.50	1	1	0	0	0	0	0
..................................................................................................AGCATAGAAATT----------GAAAATATTTTGGC...........................................................	26	2	0.50	1	0	0	0	0	1	0
....................................TGAAGACATTGGGCATAATTGAG......................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
.................................................................................................GAGCATAGAAATT----------GAAAATATTTTGG............................................................	26	2	0.50	1	1	0	0	0	0	0
..................................................................................................AGCATAGAAATT----------GAAAATATTTTG.............................................................	24	2	0.50	1	1	0	0	0	0	0
.................................................................................................GAGCATAGAAATT----------GAAAATATTTTGGC...........................................................	27	2	0.50	1	1	0	0	0	0	0
.............................................TGGGCATAATTGAGCTGCAG-CG.............................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
......................................AAGACATTGGGCATAATTGAGCTGCAG-...............................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
......................................AAGACATTGGGCATAATTGAGC.....................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0
............................................TTGGGCATAATTGAGCTGCAG-CGCCA..........................................................................................................................	26	3	0.33	1	1	0	0	0	0	0
......................................................................AACACACAGGG--------CTCAATTT................................................................................................	19	4	0.25	1	1	0	0	0	0	0

dp5

GCAATA--------------------------TGTGTACAAACTTTAGGCCTGATAGAGCTGAAA-AAATCGCACACATCC--------CAAAACCTCTGTACTGAAATA----------CAGTCCATATTGCATGATTTTGGCATAGCGAAACAACAAATTTATAGCATCACCACAGATAATGGTCGAAACA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................ACAAACTTTAGGCCTGATAGAGC.....................................................................................................................................	23	4	11.25	45	0	14	0	0	0	0	0	19	12	0
..................................................................................................................................................................TATAGCATCACCACAGATAATGG........	23	1	10.00	10	0	9	0	0	1	0	0	0	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTC....................................................................	23	4	8.50	34	0	32	1	0	0	0	0	1	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTCC...................................................................	24	4	5.25	21	0	20	1	0	0	0	0	0	0	0
....................................TACAAACTTTAGGCCTGATAGAGC.....................................................................................................................................	24	4	4.75	19	0	1	0	0	0	0	0	11	7	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTCCA..................................................................	25	4	3.50	14	0	12	0	0	0	0	0	2	0	0
......................................................................................................................................................AAACAACAAATTTATAGCATCAC....................	23	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................AAACAACAAATTTATAGCATCACC...................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................TATAGCATCACCACAGATAATGGTCGA....	27	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................TATAGCATCACCACAGATAATGGT.......	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGAG......................................................................................................................................	22	4	1.75	7	0	1	0	0	0	0	0	6	0	0
.....................................ACAAACTTTAGGCCTGATAGAGCTG...................................................................................................................................	25	4	1.50	6	0	0	0	0	0	0	0	6	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAGT.....................................................................	22	4	1.25	5	0	5	0	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGA.......................................................................................................................................	21	4	1.25	5	0	1	0	0	0	0	0	4	0	0
..................................................................................................................................................................TATAGCATCACCACAGATAATGGTC......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAACAACAAATTTATAGCATC......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................CAACAAATTTATAGCATCACCACAGA..............	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CATAGCGAAACAACAAATTTATAGC.........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................AACAACAAATTTATAGCATCACC...................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATAGCATCACCACAGATAATGG........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAACAACAAATTTATAGCATCACCA..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................AGCATCACCACAGATAATGG........	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................TTTATAGCATCACCACAGATA............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................ATTTATAGCATCACCACAGATAATGG........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AAACAACAAATTTATAGCATCA.....................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATAGCATCACCACAGATAATG.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................TATAGCATCACCACAGATAATGGTA......	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................TAGCGAAACAACAAATTTATAGCAT.......................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................TATTGCATGATTTTGGCATA..............................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................TTGCATGATTTTGGCATAGCG...........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATA.........................................................................................................................................	19	4	0.75	3	0	0	0	0	0	0	0	3	0	0
.....................................ACAAACTTTAGGCCTGATAG........................................................................................................................................	20	4	0.75	3	0	2	0	0	0	0	0	1	0	0
.....................................ACAAACTTTAGGCCTGATAGAGCTGAA.................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	0	3	0	0
................................TGTGTACAAACTTTAGGCCTGATAGAGC.....................................................................................................................................	28	4	0.75	3	0	0	0	0	0	0	0	0	3	0
......................................CAAACTTTAGGCCTGATAGAGCTGAAA-...............................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	2	0
.............................................................................................ACCTCTGTACTGAAATA----------CAGT.....................................................................	21	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.................................GTGTACAAACTTTAGGCCTGATA.........................................................................................................................................	23	4	0.50	2	0	1	1	0	0	0	0	0	0	0
.............................................................................................ACCTCTGTACTGAAATA----------CAGTCCA..................................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0
....TA--------------------------TGTGTACAAACTTTAGGCCTG............................................................................................................................................	23	4	0.50	2	0	0	0	0	0	0	0	2	0	0
................................TGTGTACAAACTTTAGGCCTG............................................................................................................................................	21	4	0.50	2	0	0	0	0	0	0	0	0	2	0
..................................TGTACAAACTTTAGGCCTGATAGAGC.....................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	2	0	0
....TA--------------------------TGTGTACAAACTTTAGGCCTGATA.........................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	2	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTCCATAT...............................................................	28	4	0.50	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................ACCTCTGTACTGAAATA----------CAGTC....................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................CATCC--------CAAAACCTCTGTACTGA.......................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGAGCTGAAA-...............................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	0	1	0
...ATA--------------------------TGTGTACAAACTTTAGGCCT.............................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................AACCTCTGTACTGAAATA----------C........................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................AAACTTTAGGCCTGATAGAGCTGA..................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
..........................................................................CACATCC--------CAAAACCTCTGTACTG........................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTCCAT.................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................AAACTTTAGGCCTGATAGAGCTGAAA-...............................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................AAACCTCTGTACTGAAATA----------CAGTCCATA................................................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0
......................................CAAACTTTAGGCCTGATAGAGCTG...................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAGTCCATA................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGAGCT....................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................ACTTTAGGCCTGATAGAGCTC...................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...................................GTACAAACTTTAGGCCTGATAG........................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	1	0	0
.....A--------------------------TGTGTACAAACTTTAGGCCTGAT..........................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.............................................................................ATCC--------CAAAACCTCTGTACTGAA......................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
....TA--------------------------TGTGTACAAACTTTAGGCCTGA...........................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	1	0	0
....................................TACAAACTTTAGGCCTGATAGAGCTC...................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGAGCTGA..................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0
........................................AACTTTAGGCCTGATAGAGC.....................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................AACCTCTGTACTGAAATA----------CAG......................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCAATA--------------------------TGTGTACAAACTTTAGGCCTGATAGAGCTCAAA-ACATCGCACACATCC--------CAAAACCTCTGTACTGAAATA----------CAGTCCATATTGCATGATTTTAGCATAGCGAAACAACAAATTTATAGCATCACCACAGATAATGGTCGAAACA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................CATAGCGAAACAACAAATTTATAG..........................	24	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CATAGCGAAACAACAAATTTATAGCAT.......................	27	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................AGCGAAACAACAAATTTATAGC.........................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................CATAGCGAAACAACAAATTTATAGC.........................	25	1	1.00	1	0	1	0	0	0	0
..........................................................................CACATCC--------CAAAACCTCTGTACTGAAAA....................................................................................	27	2	0.50	1	0	1	0	0	0	0
.....................................ACAAACTTTAGGCCTGATAGAGC.....................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0

droAna3

TAATAAAATAAAATAATATAATCATAACTAATAAAATAAACACTCCGGGAAAGATTGAGCTAAAA-ACGTCCCATACATCG--------CAAAATTTATGCAATGAAATA----------ATGACATTAT---------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

GTATTG---------------------------CGATAAGGACCTTGGGCCTTATTAAGTTAAAG-ATGTCGCACACGTCC--------AGAAACAGGTGCTCTGAAATT----------GAGTCACTGATGAGCCAATTCGCGATTCAGAAGCAGCAAATATACACCATAACCACGGACAGTGGACGAAATA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGAACT-------------------------TTGTGTAAAAACTTTGGGCTTAATAGAGATAAAAAAAATCGCACACATCG--------CAATATATTTGCAATGAAGTA----------AAACCAATATTGAGTGATTCTACCATAAGCAAGAGACGAATTTATACCGTCACGAGTGATAATGGACGAAACA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTATTG---------------------------CGATAAGGACCTTGGGCCTTATTGAGTTAAAG-ATGTCGCACACGTCC--------AGAAACATTTGCTCTGAAATT----------GAGTCACTGCGGAGCCAATTCGCGATTCAGAAGCAGCAAATATACACCATAACCACGGACAATGGCCGAAATA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAATT--------------------------TGCGTTAAAACGTTGGGTCTGATAGAGCTGAAG-GCATCGCA----------------------------CCGAAATT----------AAGTCCAGATTGGCTGATTATTGCATGTCGATAGACAAAATTTATACCATCACGATGCACAACAGTCGAAACG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAAATC--------------------------GTTTTTCGGACATTGGGGCTGAAAGAGCTCAAA-CAAAGTCACACAGGTATATATAATATTATTTTTTCACAGAATTT----------TTTCCAATATTTTA---------------TGAGTCATACATTTATACTGTTACGACGGACAATGGCGCAAACA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGAATA--------------------------TCCATTAAAACTTTAGGCCTGATAGAGTTAAAA-AAGTCGCACACATCC--------CAAAATTTGTGCACACAAATT----------AAGTCCATCCTGCGTGATTTTGGAATATCAAAAGATCAAATTTACACCATCACGACGGACAACGGTCGTAACA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCCATT--------------------------GAGATCAAGACTTTAGGTGTTATTGAGCTGCAT-CAAAAACATACTGGG--------CTCAATTTGAGCAGTGAAATT----------GAAAATATTTTGGCAGATTTTTCAATTTCTAAGCAGCAAATTTATACCATCACGTCCGACAATGGCAAAAATA	Size	Hit Count	Total Norm	Total
No Reads

dwi_4053

scf2_1100000004967:1577483-1577540 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads