ID:

dwi_4020

 Coordinate:

scf2_1100000004963:4094584-4094661 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dwil\GK18424-cds]; CDS [Dwil\GK18424-cds]; exon [dwil_GLEANR_1880:15]; exon [dwil_GLEANR_1880:14]; intron [Dwil\GK18424-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scf2_1100000004382:974108-974128 +
  2. scf2_1100000004511:2091280-2091300 +
  3. scf2_1100000004511:8793375-8793395 +
  4. scf2_1100000004514:710160-710180 +
  5. scf2_1100000004514:905837-905857 +
  6. scf2_1100000004516:403096-403116 +
  7. scf2_1100000004521:2352069-2352089 +
  8. scf2_1100000004558:2557447-2557467 +
  9. scf2_1100000004590:1889485-1889505 +
  10. scf2_1100000004762:1574025-1574045 +
  11. scf2_1100000004768:2246470-2246490 +
  12. scf2_1100000004822:2705291-2705311 +
  13. scf2_1100000004943:4253402-4253422 +
  14. scf2_1100000004943:9171038-9171058 +
  15. scf2_1100000004943:14639684-14639704 +
  16. scf2_1100000004909:9553082-9553102 +
  17. scf2_1100000004909:9585572-9585592 +
  18. scf2_1100000004909:11775050-11775070 +
  19. scf2_1100000004954:3631113-3631133 +
  20. dwi_4020  scf2_1100000004963:4094585-4094605 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------##################################################
CAACCACAATCAGCATGGTAACATTCAACAGCAGCAGCTACAACATCAACAACAACAACAGCAGCAGCAGCAGCAACAACAACAACCATCACAAACAATACTTCATAATCATCATCTTCATACAAATGCATCGTCCGCTAGCTTGGGCTATGGCCATTGCCGTGAGAGCGAGCCGCTA
**************************************************..........((.((....)).))......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body		 M020
head
 V119
head
 M045
female body
...................AACATTCAACAGCAGCAGC............................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
.................................................................................................................ATCTTCATACAAATGCATCGTCCACT....................................... 26 1 1 1.00 1 0 0 1 0 0
................................................................................................................................................GGGCTATGGCCATTGCCGTGAGAGCGA....... 27 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................ACCTGCATCGTCCGTTAGCT................................... 20 3 4 0.50 2 0 0 0 2 0
...................................................ACAACAACAGCAGCAGCAGCA.......................................................................................................... 21 0 20 0.40 8 8 0 0 0 0
....................................................CAACAACAGCAGCAGCAGC........................................................................................................... 19 0 20 0.35 7 7 0 0 0 0
.................................................CAACAACAACAGCAGCAGCAGC........................................................................................................... 22 0 20 0.25 5 5 0 0 0 0
...........................................CATCAACAACAACAACAGCAGCAGCAGC........................................................................................................... 28 0 5 0.20 1 0 1 0 0 0
................................................ACAACAACAACAGCAGCAGC.............................................................................................................. 20 0 20 0.15 3 2 0 0 1 0
...CCAGAATCAGCATGCTCACA........................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 1
.............................................TCAACAACAACAACAGCAGCAGCAGC........................................................................................................... 26 0 9 0.11 1 0 0 0 0 1
.............................................TCAACAACAACAACAGCAGCAGCAGTA.......................................................................................................... 27 1 12 0.08 1 1 0 0 0 0
...CCAGAATCAGCATGCTCAC............................................................................................................................................................ 19 3 16 0.06 1 0 0 0 0 1
....................................................................AGCAGCAACAACAACAACCA.......................................................................................... 20 0 20 0.05 1 1 0 0 0 0
.....................................................AACAACAGCAGCAGCAGCAGCAAC..................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
.....................................................AACAACAGCAGCAGCAGCAGCA....................................................................................................... 22 0 20 0.05 1 0 0 0 1 0
...............................................AACAACAACAACAGCAGCAGCA............................................................................................................. 22 0 20 0.05 1 0 1 0 0 0
.......................................................CAACAGCAGCAGCAGCAGCAA...................................................................................................... 21 0 20 0.05 1 0 0 0 0 1
....................................................CAACAACAGCAGCAGCAGCAGCAA...................................................................................................... 24 0 20 0.05 1 1 0 0 0 0
................................................ACAACAACAACAGCAGCAGCAGCA.......................................................................................................... 24 0 20 0.05 1 0 0 0 1 0
.................................................CAACAACAACAGCAGCAGCAGCAGC........................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
................................................ACAACAACAACAGCAGCAGCAGC........................................................................................................... 23 0 20 0.05 1 0 0 0 1 0

Anti-sense strand reads

GTTGGTGTTAGTCGTACCATTGTAAGTTGTCGTCGTCGATGTTGTAGTTGTTGTTGTTGTCGTCGTCGTCGTCGTTGTTGTTGTTGGTAGTGTTTGTTATGAAGTATTAGTAGTAGAAGTATGTTTACGTAGCAGGCGATCGAACCCGATACCGGTAACGGCACTCTCGCTCGGCGAT
**************************************************..........((.((....)).))......................................................************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 M020
head
................CCATTGTAAGTAGTCATC................................................................................................................................................ 18 2 6 5.50 33 22 8 1 2
...............GCCATTGTAAGTAGTCATC................................................................................................................................................ 19 3 20 1.75 35 9 22 4 0
..............CGCCATTGTAAGTAGTCGTC................................................................................................................................................ 20 3 5 0.20 1 0 1 0 0
........................................................TTGTCGTCGTCGTCGTCGT....................................................................................................... 19 0 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004963:4094534-4094711 + dwi_4020 CA-------------ACC-ACAATCAGCATGGTA--------A------------CATT------------------CAACAGCAGCAGCTACAACATCAACAACAACAACAGCAGCA---GCAG------------CAG------------------------------------------CAACAACAACAACC------------------------ATCA--------------------------------------------------------CAAACAATAC---------------TTC---ATAATC----------ATCATCTTCA---T-----A-CAAATGCATCGTCC------------------------------GC-------T----------------------------------------AGCTTGGGCTATGG----------------------------------------------CCATTG--CCGTGAG--AGCG-AGC-CGCTA
droVir3 scaffold_12928:5264223-5264394 + CA-------------GCA-GCAG--------------------TCGCAT---C----------------GCAGCCATCATCAGCAGCAGCAGCAACAGC---AGCAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------GCGACGGGAGAA--AACATTCAAAGTA--------------------------------------------------------------------------------------------TGA-------------------TTTTTAGAGACG----------------------------TCATAAAA----------------ATTGCCCAGCCCGC-GACA------------------------------------AGTTGGCTACAAA----------------------------------------------CACGACGAC-----GACGGC-G-GCGG-TA
droMoj3 scaffold_6498:857031-857194 - CA-------------ACA-GCAA--------------------CAGCAA---C----------------AGCAACAACAACAGCAACAACAACAGCAGC---AGCAACAACAACAGCA---GCAG------------CAA---------------------CA---------------------GCAACAGCAACAGCAACAACACCAGCA------------------------------------------------------------------------------------------------------------T---AACCACCAGCACCA----------------------------GCACCAAC----------------A--------------------CCATCATCAGCCTCTGTCGCAC---------------TTGCC----------------------------------------------------G-----TTGTTGT-------CGC-CG-CT
droGri2 scaffold_15126:2974185-2974356 - CA-------------AGCAACAA--------------------GCACAA---C----------------AGCAACATCAACATCAACATCAACAGCTA---CAACAATAGCAACAGCA---GCAG------------CAAC---------------------A---------------------GCAACAGCAACA---------------TCAACAACAACCACAACCACTCAGCTTGCAATCCGCG---------------------------------------------------------------------------------------CT--------CATCGCC------------------------------------------------------------------------------------------GGCCGCTGCGACCGCAG-------------------------------------------CCGTTA--CAATCTC--AGCC-ACT-GGCGG
dp5 XR_group8:5186394-5186566 + CTCCACAGGCCACCAC---GGAA--------------------GAGGAG---C----------------AGCAGCAGCAGCAGCAACAGCAACAGTTG---CAACAACAGCAGCAGCA---GCAG------------CATC---------------------A---------------------ACAACAACAACA-----------------------------------------------------------------GCAAC---------------------------------------AGCATTT---GC----------AACAGCAACA-------------AATGC------------------------------------------------------------------------------------------------------AACAG---CAGCAGCAGCAGGTCCAGGCAGT------------GCGCACTG--CGAGTGG--AGCC-A------GC
droPer2 scaffold_35:754245-754416 - CA-------------ACA-ACAG--------------------CAGCAA---C----A---------ACAG---------CAGCAGCAACAACAGCAG---CAGCAACAGCAGCAGCA---GCAG------------CAG------------------------------------------CAACAACAGCAGCA---------------------GCAG-----------------------------------------------------------CAAATGCCGC---------------TCC-TTT---GC----------AGCAGTCCCA--------CATCGATGGCAGCGGCC------------------------------AC-------T--------------------T------CCG--------T-CA---CGGCCAGCTCGATAGCCGCCG------G------------------------------------------AGCCCT-GGC-CGCCA
droAna3 scaffold_12916:5319816-5319992 + CA-------------ACA-ACAG--------------------CCGCAT---C----------------AGCAGCAGCAACATC---CAC------------------------AGCAGCAGCAG---CTACTACT---------ACAGCAACAACATCCACAGCAACTGCAGCAG------CATCAACAACATC-----------------------------------------TGACAGTCATGGATAATCACCAACAGCAAC---------------------------------------ATCAGCC---GC-AT---ATCCATCA----------------------------------------------------------------------------------------------------------------------GCAACAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-AACAA
droBip1 scf7180000395567:7244-7411 - CA-------------GCA-ACAA--------------------CAGCAG---C----------------AACATCAGCTGCAAC---AGCACCAGCAACAGTTACAACACCAGCAGCA---GCAG------------CAA---------------------CAGCAACAGCACCT------------------GCA---------------CCAGCAACAGCTTCAGCCG--------------------------------------------------------------------------CACCAGCA---GC-------------------A-------------AATGCAACA-CC------------------------------AC----------------------------------------------C-AGCAGCAACAACAGCAGCAG---CAA------C------------------------------------------AGCACC-AGC-AGCTG
droKik1 scf7180000302706:2290514-2290674 - CA-------------ACA-ACAT--------------------CAACAG---C----------------AGC---------AGCAGCAGCAACAACAAT---AACAACAACAATA------ACAA------TA---ATAGC---------------------C------A------------CAACAGCAACATGA------------------GCAACAA------------------------------------------------------------------------------------------------------GCACGCCACCACCACCATGCTG-----AACGCAGC------------------TCCTCTGCCGAGCGC------------------------------------------------------------CGTGA---------CCA------G-------------CTCCTCGTCGG------------C----C--AGCG-AGC-TGC--
droFic1 scf7180000454038:128794-128959 - CA-------------ACA-ACAA--------------------TGGGAC---C----------------TGCAACAGCAGCAGCAGCAACAGCAACAAC---AACAACAACAGCA------GCAA------CA---ACAGCAACAGCAGCAA---------TA---------------------CAAAC---------------------------AGCAG------------------------------------------------------------------------------------------------------AAGCAGCAGCAACATCAG------------------GC------------------------------------------------------------------------------------------------GACAA---CAACGGCAACTTGA--------------CCGCAACGTTCATTG--CTCCATT--GAAG-AAC-CCCAA
droEle1 scf7180000491193:3102704-3102874 - TA-------------CAC-ACCAGCAA----------------C---AGCAGCAA-CA---------ACAA---------CAGCAGCAGCAGCAGCAAC---AGCAACAACAGCAGCA---GCAG------------CAG------------------------------------------CAACAACACCACCAACATCAGCAGCAGCA------------------------------------------------------------------------------------------------------------T---GCACAGCAGCAACATCAT------------------GCC------------------------------GCCCAGCTGGCCCATACACT------------------------------------TTCTTCGGC----------------------------------------------CGCTGTTGC-----TGTTGC-A-GCG--GG
droRho1 scf7180000777610:20807-20980 - CC-------------ACA-ACAAGCAG----------------C---TCCCACAA-CA---------ACAG---------CAACATCCACAACAGCAAC---AGCAACATCAACAACA---ACAG------------CAG------------------------------------------CAACATCTTTATCATTA------------------TCAG--------------------------------------------------------------------------------------C---CACACCA-TCATCATCATCATCAACAACGA------------------TTT-------------------------------------------------------------------CATTAGCAACACGTGCAGCAGCAGCAGCAA-TG---CAG------C------------------------------------------AGCAGC-AGC-AACAA
droBia1 scf7180000302428:281257-281436 + CA-------------GCG-ACAA--------------------CAGCAG---C----------------AGCAACATCAGCAGCAGCAGCAACACCAG---CAGCAACATCAGCAGCA---GCAG------------CAA---------------------TA---------------------CCAGCAGCAGCA---------------------------------------------------------------------------------------------------------------------------------CTATCAGCAACATTAT----------CAGCAGCAGCACTTGTACCAGCATCATCCCAGCCTGGCGCTGCCTGGCCTGC-CACC-----------------------------------------------------------------------------------------------CGCTG--TCGAGA-TGGTGG-AGT-TGCAA
droTak1 scf7180000415352:1047759-1047943 - CC-------------AGCAGCAG--------------------CAGCAG---C----------------AGCAACATCACCAGCAGCAGCAACAGCATC---ACTTCCACCACCAGCA---ACAG------------CAGC---------------------A---------------------GCAGCAGCAACA-----------------------------------------------------------------------------------------GCCGCATCACTCGCATCACCA-T---GGCCATG-GTCATGACAACAGCAACATGTC------------------GCT------------------------------GCCC-----TC-G-----------------------------------CCAACTGCGGCTGCTGCGGCGG---CTG------C------------------------------------------TGCTGC-GGC-TGCTG
droEug1 scf7180000409209:68838-69013 + AC-------------A---ATGA--------------------GCATAG---C----------------AACAACAACAGCAGC---AGCAGCAATAACAATAAAGAAACCAGCAGCA---GCAG------------CAAC---------------------AGCAACAACAACAGCAACA------------------------------------A-----------------------------------------------------------------GCAACAC--AATAAAAATCA-CAGTAACC---GT-AG---AAGCAGCA-------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAG---CAA------CAGCAACAGCAACA------------ACACAG--------------TGA-AAG-TGATA
dm3 chrX:4960878-4961060 + CG-------------CTG-CCTACCAGCAG-------------C---A----CAACATCTATGCACAGCAGCAACAGCAGCAGC---AGCAGCAGCAT---CATCAACAGCA---------GCAA------CA---GCAGCAA------------------CA---------------------TCATCACTTC-----------------------------------------------------------CACCACCAGCAACAACAGCAGCCACAGCCACAGTCGCATCATTCGCACC---------------------------------------------------------------------------------------------------------------------------------------------ATCATGGCCATGG----------------------------------------------TCATGA--CAA-CAG--CAACATGT-CG-CT
droSim2 x:5287302-5287464 + CA-------------TTC-ACCAGCAG----------------C---ATCAGCAG-CA---------CCAG---------CAGCAGCAACACCAGCAAC---AGCAGCACCAGCAGCA---ACAG------------CAGC---------------------A---------------------GCAACACCAACA---------------TCAGCAGCAGCAACAGCAG--------------------------------------------------------------------------CACCTTCA---GC----------AGCAGCAACA-------------------------------------------------------------------------------------------------------CCACCAGCTGCAGCAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-ATCAA
droSec2 scaffold_4:4780053-4780234 + CG-------------GCA-ACCGCTAGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGCAACAGCAA---CATCACAACCAGCAGCAGCAGCAG---CAACAACA---------------------------------GCAGCAGCATCATGCACAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAACA-GCAACAGCAGCAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------TCAACTATCGCGA--------------------------------------------GGAGTCGAATG--ACACAAG--CTGCTCGC-AGCAC
droYak3 3R:20117438-20117593 - GC-------------AGG-------------GTCACCTCCAG-C---AGCAGCAG-CA---------GCAG------------CAGCAGCAACATCAG------------C---AGCA---GCATCAGCAGTTGCA---------GCAGCAA---------CA---------------------TCAGC---------------------------AACAG---------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACC----G-----AATGC--------------------------------------------------------------------------------------GAACAG-----------------------------------------CTCCTCGGCGGCATCCAGTG--GAGCGGG--AAGC-AGC-AGCGA
droEre2 scaffold_4820:2064413-2064594 - CG-------------GCA-ACCGCTAGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGCAACAGCAG---CATCACAACCAGCAGCAGCAGCAG---CAACAACA---------------------------------GCAGCAGCAACATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAACA-GCAACAGCAGCAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------TTAACTATCGCGA--------------------------------------------GGAGTCGAATG--ACACGAG--CTGCTCCC-AGCAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CA-------------ACC-ACAATCAGCATGGTA--------A------------CATT------------------CAACAGCAGCAGCTACAACATCAACAACAACAACAGCAGCA---GCAG------------CAG------------------------------------------CAACAACAACAACC------------------------ATCA--------------------------------------------------------CAAACAATAC---------------TTC---ATAATC----------ATCATCTTCA---T-----A-CAAATGCATCGTCC------------------------------GC-------T----------------------------------------AGCTTGGGCTATGG----------------------------------------------CCATTG--CCGTGAG--AGCG-AGC-CGCTASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................A--------A------------CATT------------------CAACAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTATGG----------------------------------------------CCATTG--CCGTGAG--AGCG-A........2711.00100100
.......................................................................................................ACAACAACAGCAGCA---GCAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................21200.40800080
........................................................................................................CAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................19200.35700070
.....................................................................................................CAACAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................22200.25500050
...............................................................................................CATCAACAACAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................2850.20100100
....................................................................................................ACAACAACAACAGCAGCA---GC..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.15300021
.................................................................................................TCAACAACAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................2690.11101000
...........................................................................................................................AG------------CAG------------------------------------------CAACAACAACAACC------------------------A........................................................................................................................................................................................................................................................................................................................20200.05100010
.........................................................................................................AACAACAGCAGCA---GCAG------------CAG------------------------------------------CAAC...........................................................................................................................................................................................................................................................................................................................................................24200.05100010
.........................................................................................................AACAACAGCAGCA---GCAG------------CAG------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................22200.05100001
...................................................................................................AACAACAACAACAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100100
...........................................................................................................CAACAGCAGCA---GCAG------------CAG------------------------------------------CAA............................................................................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................CAACAACAGCAGCA---GCAG------------CAG------------------------------------------CAA............................................................................................................................................................................................................................................................................................................................................................24200.05100010
....................................................................................................ACAACAACAACAGCAGCA---GCAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
.....................................................................................................CAACAACAACAGCAGCA---GCAG------------CAG------------------------------------------C..............................................................................................................................................................................................................................................................................................................................................................25200.05100010
....................................................................................................ACAACAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................23200.05100001
droVir3
CA-------------GCA-GCAG--------------------TCGCAT---C----------------GCAGCCATCATCAGCAGCAGCAGCAACAGC---AGCAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------GCGACGGGAGAA--AACATTCAAAGTA--------------------------------------------------------------------------------------------TGA-------------------TTTTTAGAGACG----------------------------TCATAAAA----------------ATTGCCCAGCCCGC-GACA------------------------------------AGTTGGCTACAAA----------------------------------------------CACGACGAC-----GACGGC-G-GCGG-TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................CATAAAA----------------ATTGCCCAGCCCGC-.................................................................................................................................2112.002000000000000000000000000000001000000100000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGGCTACAAA----------------------------------------------CACGACGA......................2111.001000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................G------------CAG---------------------CA---------------------GCGACGGGAGAA--...............................................................................................................................................................................................................................................................................................................................................1811.001000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAA----------------------------------------------CACGACGAC-----GACGGC-G-GC.....2111.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AAA----------------ATTGCCCAGCCCGC-GACA------------------------------------AGTTGG...................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................A----------------ATTGCCCAGCCCGC-GACA------------------------------------AGTT.....................................................................................2311.001000000000000000000010000000000000000000000000000000000000000000
.............................................GCAT---C----------------GCAGCCATCATCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAA----------------------------------------------CACGACGAC-----GACGGC-G-G......2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................GA-------------------TTTTTAGAGACG----------------------------TCATAAAA----------------................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................AGCAACAACAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................19200.255000000000000000000001000000030000100000000000000000000000000000
...........................................................................................................CAACAGCAGCA---GCAG------------CAG---------------------CA---------------------.............................................................................................................................................................................................................................................................................................................................................................20200.204000000000000000000000000000000000000400000000000000000000000000
................................................................................................AGC---AGCAACAACAGCAGCA---............................................................................................................................................................................................................................................................................................................................................................................................................................19200.153002000000000000000000010000000000000000000000000000000000000000
........................................................................................................CAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------GC...........................................................................................................................................................................................................................................................................................................................................................25200.102000200000000000000000000000000000000000000000000000000000000000
.................................................................................................GC---AGCAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................23200.102002000000000000000000000000000000000000000000000000000000000000
........................................................................................................CAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------.............................................................................................................................................................................................................................................................................................................................................................23200.102000000000000000000000000000000000000200000000000000000000000000
........................................................................................................CAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................19200.102000000000000000000000020000000000000000000000000000000000000000
..........................................................................CATCATCAGCAGCAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.071000000000000000000000000000000001000000000000000000000000000000
..............................................................................ATCAGCAGCAGCAGCAACAGC---AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................25170.061000000000000000000000000000000000000000000000000000000000001000
..........................................................................................AGCAACAGC---AGCAACAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000001000000000000000000000000000000000000000000000
.......................................................................................................GCAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------GC...........................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000000000000000000000000001000
................................................................................................AGC---AGCAACAACAGCAGCA---GCAG------------CAG---------------------C...................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000000100000000000000000000000000000
.............................................................................................AACAGC---AGCAACAACAGCAGCA---GCAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................28200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................ACAGC---AGCAACAACAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................26200.051000100000000000000000000000000000000000000000000000000000000000
.......................................................................................AGCAGCAACAGC---AGCAACAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................CAGC---AGCAACAACAGCAGCA---G...........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000001000000000000000000000000000000000
...........................................................................ATCATCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000000000000000000000000001000000000000000000000000
...........................................................................................GCAACAGC---AGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..........................................................................................AGCAACAGC---AGCAACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000100000000000000000000000000
..........................................................................................AGCAACAGC---AGCAACAACAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................CAGCAGCAACAGC---AGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010000000000000000000000000000000000000000000000000000000000
...................................................................................CAGCAGCAGCAACAGC---AGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000001000000000000000000000000000000
............................................................................................CAACAGC---AGCAACAACAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000010000000000000000000000000000000000000000
.......................................................................................................GCAACAACAGCAGCA---GCAG------------CAG---------------------CA---------------------.............................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................AGCAGCA---GCAG------------CAG---------------------CA---------------------GCGA.........................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000010000000000000000000000000000000000000000
...............................................................................................CAGC---AGCAACAACAGCAGCA---............................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000001000000000000000000000000000000000000
.................................................................................................GC---AGCAACAACAGCAGCA---GCAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000000010000000000000000000000000000000
............................................................................................................AACAGCAGCA---GCAG------------CAG---------------------CA---------------------.............................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000010000000000000000000000000000000
..........................................................................CATCATCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................CAACAGCAGCA---GCAG------------CAG---------------------CA---------------------G............................................................................................................................................................................................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
................................................................................................AGC---AGCAACAACAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
.................................................................................................GC---AGCAACAACAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................AGCAACAACAGCAGCA---GC..........................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000000000000000001000000000000000000000000000000000000000000000
droMoj3
CA-------------ACA-GCAA--------------------CAGCAA---C----------------AGCAACAACAACAGCAACAACAACAGCAGC---AGCAACAACAACAGCA---GCAG------------CAA---------------------CA---------------------GCAACAGCAACAGCAACAACACCAGCA------------------------------------------------------------------------------------------------------------T---AACCACCAGCACCA----------------------------GCACCAAC----------------A--------------------CCATCATCAGCCTCTGTCGCAC---------------TTGCC----------------------------------------------------G-----TTGTTGT-------CGC-CG-CTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...............................................................................................................AACAGCA---GCAG------------CAA---------------------CA---------------------GCAACA.......................................................................................................................................................................................................................................................................................................................................................22201.05212100000
...............................................................................................................AACAGCA---GCAG------------CAA---------------------CA---------------------GCAAC........................................................................................................................................................................................................................................................................................................................................................21200.306000060
..............................................CAA---C----------------AGCAACAACAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.153300000
.......................................................................................AACAACAGCAGC---AGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................19200.102200000
..........................................................................................................ACAACAACAGCA---GCAG------------CAA---------------------C...................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
..................................................................................................C---AGCAACAACAACAGCA---GCAG------------CAA---------------------C...................................................................................................................................................................................................................................................................................................................................................................................25200.102000020
.......................................................................................AACAACAGCAGC---AGCAACAACAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000010
..........................................................................................................ACAACAACAGCA---GCAG------------CAA---------------------CA---------------------GC...........................................................................................................................................................................................................................................................................................................................................................23200.051000010
...............................................................................ACAGCAACAACAACAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
...................................................................................................................GCA---GCAG------------CAA---------------------CA---------------------GCAACAGC.....................................................................................................................................................................................................................................................................................................................................................20200.051100000
......................................................................GCAACAACAACAGCAACAACAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
......................A--------------------CAGCAA---C----------------AGCAACAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
....................................................C----------------AGCAACAACAACAGCAACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
................................................................................................................ACAGCA---GCAG------------CAA---------------------CA---------------------GCAACAGCA....................................................................................................................................................................................................................................................................................................................................................24200.051000010
droGri2
CA-------------AGCAACAA--------------------GCACAA---C----------------AGCAACATCAACATCAACATCAACAGCTA---CAACAATAGCAACAGCA---GCAG------------CAAC---------------------A---------------------GCAACAGCAACA---------------TCAACAACAACCACAACCACTCAGCTTGCAATCCGCG---------------------------------------------------------------------------------------CT--------CATCGCC------------------------------------------------------------------------------------------GGCCGCTGCGACCGCAG-------------------------------------------CCGTTA--CAATCTC--AGCC-ACT-GGCGGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
..................................................................................................................................................................................................................................................TCCGCG---------------------------------------------------------------------------------------CT--------CATCGCC------------------------------------------------------------------------------------------GGCCGC.....................................................................................2120.50110
.......................................................................CAACATCAACATCAACATCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110
.........................................................................................................................................................................................CAACAGCAACA---------------TCAACAACA.........................................................................................................................................................................................................................................................................................................................20200.05110
................................................................................................................ACAGCA---GCAG------------CAAC---------------------A---------------------GCAACA.......................................................................................................................................................................................................................................................................................................................................................21200.05110
dp5
CTCCACAGGCCACCAC---GGAA--------------------GAGGAG---C----------------AGCAGCAGCAGCAGCAACAGCAACAGTTG---CAACAACAGCAGCAGCA---GCAG------------CATC---------------------A---------------------ACAACAACAACA-----------------------------------------------------------------GCAAC---------------------------------------AGCATTT---GC----------AACAGCAACA-------------AATGC------------------------------------------------------------------------------------------------------AACAG---CAGCAGCAGCAGGTCCAGGCAGT------------GCGCACTG--CGAGTGG--AGCC-A------GCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGGTCCAGGCAGT------------.................................1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................AACA-------------AATGC------------------------------------------------------------------------------------------------------AACAG---CAGCAGCAGCAGG.......................................................2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCACTG--CGAGTGG--AGCC-A------G.2111.0010100000000
................................................................................................................GCAGCA---GCAG------------CATC---------------------A---------------------ACAACA.......................................................................................................................................................................................................................................................................................................................................................2170.1410000100000
...........................................GAGGAG---C----------------AGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001000000
............................................AGGAG---C----------------AGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.........................................................................................................AACAGCAGCAGCA---GCAG------------CATC---------------------...................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.................................................................................................G---CAACAACAGCAGCAGCA---GC..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000100000
.............................................GGAG---C----------------AGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
.................................................................................................G---CAACAACAGCAGCAGCA---GCAG------------C...........................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.....................................................................................................CAACAACAGCAGCAGCA---GCAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
....................................................C----------------AGCAGCAGCAGCAGCAACAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
droPer2
CA-------------ACA-ACAG--------------------CAGCAA---C----A---------ACAG---------CAGCAGCAACAACAGCAG---CAGCAACAGCAGCAGCA---GCAG------------CAG------------------------------------------CAACAACAGCAGCA---------------------GCAG-----------------------------------------------------------CAAATGCCGC---------------TCC-TTT---GC----------AGCAGTCCCA--------CATCGATGGCAGCGGCC------------------------------AC-------T--------------------T------CCG--------T-CA---CGGCCAGCTCGATAGCCGCCG------G------------------------------------------AGCCCT-GGC-CGCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGATAGCCGCCG------G------------------------------------------AGCC............2020.501010000
.................................................................................................G---CAGCAACAGCAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................21200.102002000
.........................................................................................................................................CAG------------------------------------------CAACAACAGCAGCA---------------------GCAG-----------------------------------------------------------CA...........................................................................................................................................................................................................................................................23200.051001000
................................................................................................AG---CAGCAACAGCAGCAGCA---GCA.........................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000010
..........................................................................................................................................AG------------------------------------------CAACAACAGCAGCA---------------------GCAG-----------------------------------------------------------C............................................................................................................................................................................................................................................................21200.051010000
..........................................................................................AACAGCAG---CAGCAACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droAna3
CA-------------ACA-ACAG--------------------CCGCAT---C----------------AGCAGCAGCAACATC---CAC------------------------AGCAGCAGCAG---CTACTACT---------ACAGCAACAACATCCACAGCAACTGCAGCAG------CATCAACAACATC-----------------------------------------TGACAGTCATGGATAATCACCAACAGCAAC---------------------------------------ATCAGCC---GC-AT---ATCCATCA----------------------------------------------------------------------------------------------------------------------GCAACAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-AACAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................T---------ACAGCAACAACATCCACAGCAACTGC..........................................................................................................................................................................................................................................................................................................................................................................2711.001001000
.......................................................................................................................................................................................................................................................................................................................C---GC-AT---ATCCATCA----------------------------------------------------------------------------------------------------------------------GCAACAGCAACAG---C...................................................................2711.001010000
.......................................................................................................................................................................................................................................................GATAATCACCAACAGCAAC---------------------------------------ATC.................................................................................................................................................................................................................................2211.001010000
.............................................................................................................................................................................................AACATC-----------------------------------------TGACAGTCATGGAT...........................................................................................................................................................................................................................................................................................2011.001100000
.....................................................................................................................................................................................................................................................................................................................GCC---GC-AT---ATCCATCA----------------------------------------------------------------------------------------------------------------------GCAAC...............................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................ATCA----------------------------------------------------------------------------------------------------------------------GCAACAGCAACAG---CAG------C------------------------------------------AGCAGC-.........2740.251010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-A....25200.153000003
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAG------C------------------------------------------AGCAGC-AGC-.....18200.102020000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-.....21200.102000002
.......................................................................................................................................................................................................................................................................................................................................ATCA----------------------------------------------------------------------------------------------------------------------GCAACAGCAACAG---CAG------C------------------------------------------................21150.071010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-A....24200.051000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---CAG------C------------------------------------------AGCAGC-AGC-.....19200.051000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAG---CAG------C------------------------------------------AGCAGC-.........22200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAG---CAG------C------------------------------------------AGCAGC-.........20200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAACAG---CAG------C------------------------------------------AGCAGC-.........23200.051000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-AAC..27200.051000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAG---CAG------C------------------------------------------AGCAGC-AGC-AACA.20200.051100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---CAG------C------------------------------------------AGCAGC-AGC-AACA.22200.051000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-A....22200.051000100
droBip1
CA-------------GCA-ACAA--------------------CAGCAG---C----------------AACATCAGCTGCAAC---AGCACCAGCAACAGTTACAACACCAGCAGCA---GCAG------------CAA---------------------CAGCAACAGCACCT------------------GCA---------------CCAGCAACAGCTTCAGCCG--------------------------------------------------------------------------CACCAGCA---GC-------------------A-------------AATGCAACA-CC------------------------------AC----------------------------------------------C-AGCAGCAACAACAGCAGCAG---CAA------C------------------------------------------AGCACC-AGC-AGCTGSizeHit CountTotal NormTotal
No Reads
droKik1
CA-------------ACA-ACAT--------------------CAACAG---C----------------AGC---------AGCAGCAGCAACAACAAT---AACAACAACAATA------ACAA------TA---ATAGC---------------------C------A------------CAACAGCAACATGA------------------GCAACAA------------------------------------------------------------------------------------------------------GCACGCCACCACCACCATGCTG-----AACGCAGC------------------TCCTCTGCCGAGCGC------------------------------------------------------------CGTGA---------CCA------G-------------CTCCTCGTCGG------------C----C--AGCG-AGC-TGC--SizeHit CountTotal NormTotal
No Reads
droFic1
CA-------------ACA-ACAA--------------------TGGGAC---C----------------TGCAACAGCAGCAGCAGCAACAGCAACAAC---AACAACAACAGCA------GCAA------CA---ACAGCAACAGCAGCAA---------TA---------------------CAAAC---------------------------AGCAG------------------------------------------------------------------------------------------------------AAGCAGCAGCAACATCAG------------------GC------------------------------------------------------------------------------------------------GACAA---CAACGGCAACTTGA--------------CCGCAACGTTCATTG--CTCCATT--GAAG-AAC-CCCAASizeHit CountTotal NormTotal
No Reads
droEle1
TA-------------CAC-ACCAGCAA----------------C---AGCAGCAA-CA---------ACAA---------CAGCAGCAGCAGCAGCAAC---AGCAACAACAGCAGCA---GCAG------------CAG------------------------------------------CAACAACACCACCAACATCAGCAGCAGCA------------------------------------------------------------------------------------------------------------T---GCACAGCAGCAACATCAT------------------GCC------------------------------GCCCAGCTGGCCCATACACT------------------------------------TTCTTCGGC----------------------------------------------CGCTGTTGC-----TGTTGC-A-GCG--GGSizeHit CountTotal NormTotal
No Reads
droRho1
CC-------------ACA-ACAAGCAG----------------C---TCCCACAA-CA---------ACAG---------CAACATCCACAACAGCAAC---AGCAACATCAACAACA---ACAG------------CAG------------------------------------------CAACATCTTTATCATTA------------------TCAG--------------------------------------------------------------------------------------C---CACACCA-TCATCATCATCATCAACAACGA------------------TTT-------------------------------------------------------------------CATTAGCAACACGTGCAGCAGCAGCAGCAA-TG---CAG------C------------------------------------------AGCAGC-AGC-AACAASizeHit CountTotal NormTotal
No Reads
droBia1
CA-------------GCG-ACAA--------------------CAGCAG---C----------------AGCAACATCAGCAGCAGCAGCAACACCAG---CAGCAACATCAGCAGCA---GCAG------------CAA---------------------TA---------------------CCAGCAGCAGCA---------------------------------------------------------------------------------------------------------------------------------CTATCAGCAACATTAT----------CAGCAGCAGCACTTGTACCAGCATCATCCCAGCCTGGCGCTGCCTGGCCTGC-CACC-----------------------------------------------------------------------------------------------CGCTG--TCGAGA-TGGTGG-AGT-TGCAASizeHit CountTotal NormTotal
No Reads
droTak1
CC-------------AGCAGCAG--------------------CAGCAG---C----------------AGCAACATCACCAGCAGCAGCAACAGCATC---ACTTCCACCACCAGCA---ACAG------------CAGC---------------------A---------------------GCAGCAGCAACA-----------------------------------------------------------------------------------------GCCGCATCACTCGCATCACCA-T---GGCCATG-GTCATGACAACAGCAACATGTC------------------GCT------------------------------GCCC-----TC-G-----------------------------------CCAACTGCGGCTGCTGCGGCGG---CTG------C------------------------------------------TGCTGC-GGC-TGCTGSizeHit CountTotal NormTotal
No Reads
droEug1
AC-------------A---ATGA--------------------GCATAG---C----------------AACAACAACAGCAGC---AGCAGCAATAACAATAAAGAAACCAGCAGCA---GCAG------------CAAC---------------------AGCAACAACAACAGCAACA------------------------------------A-----------------------------------------------------------------GCAACAC--AATAAAAATCA-CAGTAACC---GT-AG---AAGCAGCA-------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAG---CAA------CAGCAACAGCAACA------------ACACAG--------------TGA-AAG-TGATASizeHit CountTotal NormTotal
No Reads
dm3
CG-------------CTG-CCTACCAGCAG-------------C---A----CAACATCTATGCACAGCAGCAACAGCAGCAGC---AGCAGCAGCAT---CATCAACAGCA---------GCAA------CA---GCAGCAA------------------CA---------------------TCATCACTTC-----------------------------------------------------------CACCACCAGCAACAACAGCAGCCACAGCCACAGTCGCATCATTCGCACC---------------------------------------------------------------------------------------------------------------------------------------------ATCATGGCCATGG----------------------------------------------TCATGA--CAA-CAG--CAACATGT-CG-CTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................CAA------CA---GCAGCAA------------------CA---------------------TCATCACTTC-----------------------------------------------------------CAC.....................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGGCCATGG----------------------------------------------TCATGA--CAA-CAG--CA............2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCACCAGCAACAACAGCAGCCACA..............................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ACC---------------------------------------------------------------------------------------------------------------------------------------------ATCATGGCCATGG----------------------------------------------TCATGA--CAA-CAG--C.............2913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CAGCAGCCACAGCCACAGTCGCAT.................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................CCACCAGCAACAACAGCAGCCAC...............................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................TATGCACAGCAGCAACAGCAGCAGC---AGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................3012.0020000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................ATCACTTC-----------------------------------------------------------CACCACCAGCAACAACAGC.....................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AG-------------C---A----CAACATCTATGCACAGCAGCAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CAGCCACAGCCACAGTCGCAT.................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCGCACC---------------------------------------------------------------------------------------------------------------------------------------------ATCATGGCCATGG----------------------------------------------TCATGA--C......................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AACAACAGCAGCCACAGCCACAGTCG....................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................ACCAGCAG-------------C---A----CAACATCTATGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG----------------------------------------------TCATGA--CAA-CAG--CAACATGT-CG-CT2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
.....................TACCAGCAG-------------C---A----CAACATC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ACAACAGCAGCCACAGCCACAGTCGCA..................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TCGCACC---------------------------------------------------------------------------------------------------------------------------------------------ATCATGGCCATGG----------------------------------------------TCATGA--.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................TCATCACTTC-----------------------------------------------------------CACCACCAGCAACAACAGC.....................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CAGCAT---CATCAACAGCA---------GCAA------CA---.............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................TCACTTC-----------------------------------------------------------CACCACCAGCAACAACAGCAGC..................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................A------------------CA---------------------TCATCACTTC-----------------------------------------------------------CACCACCAGCA.............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
CA-------------TTC-ACCAGCAG----------------C---ATCAGCAG-CA---------CCAG---------CAGCAGCAACACCAGCAAC---AGCAGCACCAGCAGCA---ACAG------------CAGC---------------------A---------------------GCAACACCAACA---------------TCAGCAGCAGCAACAGCAG--------------------------------------------------------------------------CACCTTCA---GC----------AGCAGCAACA-------------------------------------------------------------------------------------------------------CCACCAGCTGCAGCAGCAACAG---CAG------C------------------------------------------AGCAGC-AGC-ATCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCAGCAACAG---CAG------C------------------------------------------AGC.............21201.4529000002900000000000
.......................GCAG----------------C---ATCAGCAG-CA---------CCAG---------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2051.00500000500000000000
...........................................................................................................................................GC---------------------A---------------------GCAACACCAACA---------------TCA...............................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
................................................................................................................GCAGCA---ACAG------------CAGC---------------------A---------------------GCAACAC......................................................................................................................................................................................................................................................................................................................................................2290.89800008000000000000
................................................................................CAGCAGCAACACCAGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.7414000001400000000000
...............................................................................................................AGCAGCA---ACAG------------CAGC---------------------A---------------------GCA..........................................................................................................................................................................................................................................................................................................................................................19200.05100010000000000000
....................................................................................................................................................................................................................CAGCAGCAGCAACAGCA................................................................................................................................................................................................................................................................................................................17200.05100000001000000000
............................................................................................................ACCAGCAGCA---ACAG------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
droSec2
CG-------------GCA-ACCGCTAGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGCAACAGCAA---CATCACAACCAGCAGCAGCAGCAG---CAACAACA---------------------------------GCAGCAGCATCATGCACAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAACA-GCAACAGCAGCAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------TCAACTATCGCGA--------------------------------------------GGAGTCGAATG--ACACAAG--CTGCTCGC-AGCACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................AGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020020
.....................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACATCGA------------------TCC------------------------------GC-------T...................................................................................................................................2212.0021010
.....................................................................................................................................ACA---------------------------------GCAGCAGCATCATGCAC...........................................................................................................................................................................................................................................................................................................................................................2011.0010010
................................TC--------C------------CAGT------------------CATCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTATCGCGA--------------------------------------------GGAGTCGAATG--ACAC...................2511.0010100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCGA--------------------------------------------GGAGTCGAATG--ACACAAG--C.............2711.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG--ACACAAG--CTGCTCGC-A....1911.0011000
.................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACATCGA------------------TCC------------------------------.............................................................................................................................................2311.0011000
.................A-ACCGCTAGCAA--TC--------C------------CAGT------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................................................................................................ACA-GCAACAGCAGCAGCAACATCGA------------------TC............................................................................................................................................................................2711.0011000
............................................................................................................................................................................GCAGCATCATGCACAGCACCA------------------------------------------------------------------------------------------------------------------..................................................................................................................................................................................................................................2111.0010001
..........................................C------------CAGT------------------CATCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.................................................................................................A---CATCACAACCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATG--ACACAAG--CTGCTCGC-AG...2011.0010010
................CA-ACCGCTAGCAA--TC--------C------------CAGT------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.............................A--TC--------C------------CAGT------------------CATCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
..................................................................................................................................................................................................................................................................................................................................................CGA------------------TCC------------------------------GC-------TG-T-----------------------------------TCAACTATC....................................................................................2011.0010010
.........................................................................................................................................................................................................................................................................................................................................CAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------T............................................................................................2111.0010010
......................................................................................................ATCACAACCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010010
.............................................................................CATCAGCAGCAGCAACAGCAA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510010
.............................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAACA....................................................................................................................................................................................................19200.2040040
............................................................................................................ACCAGCAGCAGCAGCAG---CAACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................2470.1410010
............................................................................................................................G---CAACAACA---------------------------------GCAGCAGCATCA................................................................................................................................................................................................................................................................................................................................................................2180.1310010
...........................................................................................................................AG---CAACAACA---------------------------------GCAGCAGCATCG................................................................................................................................................................................................................................................................................................................................................................22150.0710010
.................................................................................................................................AACAACA---------------------------------GCAGCAGCATC.................................................................................................................................................................................................................................................................................................................................................................18150.0710010
...........................................................................................................AACCAGCAGCAGCAGCAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................19150.0710010
.............................................................................................................CCAGCAGCAGCAGCAG---CAACA................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010
...............................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACATC..................................................................................................................................................................................................20200.0510010
.............................................................................CATCAGCAGCAGCAACAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510010
.......................................................................................................................CAGCAG---CAACAACA---------------------------------GCAG........................................................................................................................................................................................................................................................................................................................................................................18200.0510010
................................................................................................................GCAGCAGCAGCAG---CAACAACA---------------------------------GC..........................................................................................................................................................................................................................................................................................................................................................................23200.0510010
droYak3
GC-------------AGG-------------GTCACCTCCAG-C---AGCAGCAG-CA---------GCAG------------CAGCAGCAACATCAG------------C---AGCA---GCATCAGCAGTTGCA---------GCAGCAA---------CA---------------------TCAGC---------------------------AACAG---------------------------------------------------------------------------------------------------CAACAGCAGCAGCAGCAACC----G-----AATGC--------------------------------------------------------------------------------------GAACAG-----------------------------------------CTCCTCGGCGGCATCCAGTG--GAGCGGG--AAGC-AGC-AGCGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................GCAG------------CAGCAGCAACATCAG------------C---AGCA---............................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010000000
.....................................................................................GCAGCAACATCAG------------C---AGCA---GC..........................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000010000
................................................GCAGCAG-CA---------GCAG------------CAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
droEre2
CG-------------GCA-ACCGCTAGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGCAACAGCAG---CATCACAACCAGCAGCAGCAGCAG---CAACAACA---------------------------------GCAGCAGCAACATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAACA-GCAACAGCAGCAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------TTAACTATCGCGA--------------------------------------------GGAGTCGAATG--ACACGAG--CTGCTCCC-AGCACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCGA------------------TCC------------------------------GC-------T...................................................................................................................................2013.0030100200
.................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACATCGA------------------TCC------------------------------GC-------T...................................................................................................................................2612.0021000010
.........................................................GT------------------CATCAGCAGCAGCAACAGCAG---CATCAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.................A-ACCGCTAGCAA--TC--------C------------CAGT------------------CATCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..............................................................................................GCAG---CATCACAACCAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
...............................................................................................................................................................................GCAACATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GA............................................................................................................................................................................................................................2111.0010001000
.......................................................................................................................................................................................................................................................................................................................................AGCAGCAACATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------.............................................................................................2211.0010100000
........................................................................................GCAACAGCAG---CATCACAACCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2911.0011000000
.................A-ACCGCTAGCAA--TC--------C------------CAGT------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
................................................................................................................................................................................CAACATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GAC...........................................................................................................................................................................................................................2111.0010000010
.........................AGCAA--TC--------C------------CAGT------------------CATCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTCGAATG--ACACGAG--CTGC..........2211.0010000100
.............................A--TC--------C------------CAGT------------------CATCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCGA--------------------------------------------GGAGTCGAATG--ACAC...................2311.0010000100
...........................................................................................................................................................................AGCAGCAACATCCCCAGCACC.....................................................................................................................................................................................................................................................................................................................................................2111.0010000100
............................AA--TC--------C------------CAGT------------------CATCAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCGCGA--------------------------------------------GGAGTCGAATG--ACACGAG--C.............2711.0010100000
.........................................................................................................................................................................GCAGCAGCAACATCCCCAGCA.......................................................................................................................................................................................................................................................................................................................................................2111.0010000010
......................................................................................................ATCACAACCAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................G-T-----------------------------------TTAACTATCGCGA--------------------------------------------GGAGTCGAATG--A......................2711.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--------------------------------------------GGAGTCGAATG--ACACGAG--CTGCTCC.......2611.0011000000
........................................................................................................................................................................................................................................................................................................................................GCAGCAACATCGA------------------TCC------------------------------GC-------T...................................................................................................................................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................G-T-----------------------------------TTAACTATCGCGA--------------------------------------------GGAGTC..............................2111.0011000000
...................................................................................................................................................................................CATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAAC........................................................................................................................................................................................................................2111.0010001000
.........................AGCAA--TC--------C------------CAGT------------------CATCAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...............................................................................................................................................................................................................................................................................................................................................CATCGA------------------TCC------------------------------GC-------TG-T-----------------------------------TTAACTAC.....................................................................................2211.0010100000
.............................A--TC--------C------------CAGT------------------CATCAGCAGCAGCAACAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTATCGCGA--------------------------------------------GGAGTCGAATG--ACACGA.................2811.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAATG--ACACGAG--CTGCTCCC-A....2411.0011000000
............................AA--TC--------C------------CAGT------------------CATCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
....................................................................................................................................................................................................................................................................................................................................................A------------------TCC------------------------------GC-------TG-T-----------------------------------TTAACTATCGCGA--------------------------------------------GGAGTC..............................2811.0010100000
.................................................................................................................................AACAACA---------------------------------GCAGCAGCAACATCCCCAGC........................................................................................................................................................................................................................................................................................................................................................2711.0010000010
....................................................................................................................................................................................ATCCCCAGCACCA------------------------------------------------------------------------------------------------------------------C---GACAAC........................................................................................................................................................................................................................2011.0011000000
.......................................................................................................................................................................................................................................................................................................................GACAACA-GCAACAGCAGCAGC........................................................................................................................................................................................................2120.5011000000
............................................................................................................ACCAGCAGCAGCAGCAG---CAACAACA---------------------------------GC..........................................................................................................................................................................................................................................................................................................................................................................2720.5011000000
........................................................................................................CACAACCAGCAGCAGCAGCAG---C....................................................................................................................................................................................................................................................................................................................................................................................................................2240.2510001000
..................................................................................................................................ACAACA---------------------------------GCAGCAGCAACAT...............................................................................................................................................................................................................................................................................................................................................................19100.1011000000
..............................................................................ATCAGCAGCAGCAACAGCAG---CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................22110.0910001000
..................................................................................GCAGCAGCAACAGCAG---CATC............................................................................................................................................................................................................................................................................................................................................................................................................................................20150.0710100000
...........................................................................................................................................................................................................................................................................................................................ACA-GCAACAGCAGCAGCA.......................................................................................................................................................................................................18200.0510000010
........................................................................................................................................................................................................................................................................................................................ACAACA-GCAACAGCAGCAGC........................................................................................................................................................................................................20200.0511000000
..........................................................................................................................................................................................................................................................................................................................AACA-GCAACAGCAGCAGCA.......................................................................................................................................................................................................19200.0510000100
..................................................................................................................AGCAGCAGCAG---CAACAACA---------------------------------GCAGC.......................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
...............................................................................................................AGCAGCAGCAGCAG---CAACAACA---------------------------------GCAGCA......................................................................................................................................................................................................................................................................................................................................................................28200.0511000000
.............................................................................CATCAGCAGCAGCAACAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000010

Generated: 05/18/2015 at 09:12 AM