ID:

dwi_4015

 Coordinate:

scf2_1100000004963:3815219-3815369 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-19.0 -19.0 -19.0

Flybase annnotation

CDS [Dwil\GK18346-cds]; exon [dwil_GLEANR_1873:1]; intron [Dwil\GK18346-in]

No Repeatable elements found

mature
  1. scf2_1100000006046:493-516 -
  2. scf2_1100000004585:1278911-1278934 -
  3. scf2_1100000004585:3112618-3112641 -
  4. scf2_1100000004822:1003851-1003874 +
  5. scf2_1100000004962:447615-447638 -
  6. dwi_4015  scf2_1100000004963:3815297-3815320 +
  7. scf2_1100000004967:2228517-2228540 -
  8. scf2_1100000012441:423-446 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCAGGAAGACGAGACGCAATACCAGAAACTCCTGAATGAGTTCCGGGTAGTAAGTATACCCCTTCTCATTAAAAGTCACGTTGACAACACACACATCTCATAACCCTAGGAAGTACATTGTGACCCATATTAATCCACACTATCCACTTGTTCCATTAATGACTTCCTATACCTAGAGTAAGCACTTTAACGCTTGACCCAATATTAACTTCCTATCACATAGCACTTTTCTATTCACCTTTGTAACCAA
**************************************************.........................((((((((((............(((.((....((((((((.(((((((...((.....................))...)).)))))))))))))....)))))........))))))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
................................................................................................................................TATTAATCCACACTATCCACTTGT................................................................................................... 24 0 8 7.63 61 50 11
...............................................................................................................................ATATTAATCCACACTATCCACTTGT................................................................................................... 25 0 8 0.63 5 5 0
................................................................................................................................TATTAATCCACACTATCCACTTGTTCCAT.............................................................................................. 29 0 7 0.57 4 0 4
.....................................................................................................TAACCCTAGGAAGTACATTGTGACCCA........................................................................................................................... 27 0 10 0.40 4 1 3
................................................................................................................................TATTAATCCACACTATCCACTTGTT.................................................................................................. 25 0 8 0.25 2 2 0
..............................................................................................................................CATATTAATCCACACTATCCACTTGT................................................................................................... 26 0 8 0.25 2 2 0
................................................................................................................................TATTAATCCACACTATCCACTTGTTCCA............................................................................................... 28 0 8 0.25 2 0 2
.....................................................................................................TAACCCTAGGAAGTACATTGTGACC............................................................................................................................. 25 0 12 0.17 2 2 0
......................................................................................................................................................................................................CCCAATATTAACTTCCTATCACATAGCA......................... 28 0 7 0.14 1 0 1
..................................................................................................................TACATTGTGACCCATATTAATCCACACTA............................................................................................................ 29 0 8 0.13 1 0 1
...............................................................................................................................ATATTAATCCACACTATCCACTTG.................................................................................................... 24 0 8 0.13 1 0 1
..................................................................................................................TACATTGTGACCCATATTAATCCACAC.............................................................................................................. 27 0 8 0.13 1 0 1
............................................................................................................................CCCATATTAATCCACACTATCCACTTGT................................................................................................... 28 0 8 0.13 1 1 0
..................................................................................................................................TTAATCCACACTATCCACTTGTTCCAT.............................................................................................. 27 0 9 0.11 1 0 1
.....................................................................................................................ATTGTGACCCATATTAATCCACACTA............................................................................................................ 26 0 9 0.11 1 0 1
................................................................................................................................TATTAGTCCACACTATCCACTTGT................................................................................................... 24 1 9 0.11 1 1 0
..................................................................................................................TACATTGTGACCCATATTAATCCAC................................................................................................................ 25 0 9 0.11 1 0 1
...................................................................................................................................TAATCCACACTATCCACTTGTTCCAT.............................................................................................. 26 0 9 0.11 1 0 1
........................................................................................................................GTGACCCATATTAATCCACA............................................................................................................... 20 0 10 0.10 1 0 1
.....................................................................................................TAACCCTAGGAAGTACATTGTGACCC............................................................................................................................ 26 0 10 0.10 1 0 1
.....................................................................................................................................................TGTTCCATTAATGACTTCCTATACC............................................................................. 25 0 10 0.10 1 0 1
..........................................................................................................CTAGGAAGTACAATGTGACCC............................................................................................................................ 21 1 11 0.09 1 1 0
.....................................................................................................TAGCCCTAGGAAGTACATTGTGAC.............................................................................................................................. 24 1 12 0.08 1 0 1
.....................................................................................................TAACCCTAGGAAGTACATTGTGAC.............................................................................................................................. 24 0 12 0.08 1 1 0

Anti-sense strand reads

ACGTCCTTCTGCTCTGCGTTATGGTCTTTGAGGACTTACTCAAGGCCCATCATTCATATGGGGAAGAGTAATTTTCAGTGCAACTGTTGTGTGTGTAGAGTATTGGGATCCTTCATGTAACACTGGGTATAATTAGGTGTGATAGGTGAACAAGGTAATTACTGAAGGATATGGATCTCATTCGTGAAATTGCGAACTGGGTTATAATTGAAGGATAGTGTATCGTGAAAAGATAAGTGGAAACATTGGTT
**************************************************.........................((((((((((............(((.((....((((((((.(((((((...((.....................))...)).)))))))))))))....)))))........))))))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 V117
male body		 M020
head
...................................................................................................................TGTAACACTGGGTATAATTAGGT................................................................................................................. 23 0 10 0.30 3 3 0 0 0
..................................................................................................................ATGTAACACTGGGTATAATTAGGT................................................................................................................. 24 0 10 0.20 2 2 0 0 0
..............................................................................................................................................................................................TGCGAACTGGGTTATAATTGAAGGAT................................... 26 0 12 0.17 2 2 0 0 0
.....................................................................................................................................TAGGTGTGATAGGTGAACAAGGTAAT............................................................................................ 26 0 13 0.15 2 1 1 0 0
...............................................................................................................................TATAATTAGGTGTGATAGGTGAACAA.................................................................................................. 26 0 8 0.13 1 1 0 0 0
..........................................................................................................................................GTGATAGGTGAACAAGGTAATTACTG....................................................................................... 26 0 8 0.13 1 1 0 0 0
.......................................................................................................TGGGATCCTTCATGTAACACTGGGTATA........................................................................................................................ 28 0 9 0.11 1 1 0 0 0
....................................................................................................................................................................................................CTGGGTTATAATTGAAGGATAGTGTA............................. 26 0 9 0.11 1 0 0 1 0
.......................................................................................................................ACACTGGGTATAATTAGGTGTGAT............................................................................................................ 24 0 9 0.11 1 0 1 0 0
.........................................................................................................................ACTGGGTATAATTAGGTGTGATA........................................................................................................... 23 0 9 0.11 1 1 0 0 0
............................................................GGGGAGACTAATTTTCAGT............................................................................................................................................................................ 19 2 9 0.11 1 0 0 0 1
..............................................................................................................................................................................................................................TCGTGAAAAGATAAGTGGAAACATTGGT. 28 0 10 0.10 1 1 0 0 0
..............................................................................................................................................................................................................................TCGTGAAAAGATAAGTGGAAACATTGGTT 29 0 10 0.10 1 1 0 0 0
....................................................................................................................................................................................................CTGGGTTATAATTGAAGGATAG................................. 22 0 10 0.10 1 0 1 0 0
.......................................................................................................................ACACTGGGTATAATTAGGTT................................................................................................................ 20 1 12 0.08 1 0 1 0 0
..............................................................................................................................................................................................TGCGAACTGAGTTATAATTGAAGGAT................................... 26 1 12 0.08 1 1 0 0 0
...........................................................................................................................................................................TGGATCTCATTCGTGAAATTGCGAAC...................................................... 26 0 13 0.08 1 0 1 0 0
.......................................................................................................................................GGTGTGATAGGTGAACAAGGTAAT............................................................................................ 24 0 13 0.08 1 0 1 0 0
.............................................................................GTGCAACTGTTGTGTGTGTAG......................................................................................................................................................... 21 0 14 0.07 1 0 1 0 0
.............................................................................GTGCAACTGTTGTGTGTGTA.......................................................................................................................................................... 20 0 15 0.07 1 0 1 0 0
............................................................................AGTGCAACTGTTGTGTGTGTA.......................................................................................................................................................... 21 0 15 0.07 1 0 1 0 0
...........................................................................................................................................................TTATTACTGCAGGATATGAATC.......................................................................... 22 3 16 0.06 1 1 0 0 0
..........................................................................................................................................................................ATGGATCTCATTCGTGAAAT............................................................. 20 0 17 0.06 1 1 0 0 0
................CGGTAGGGTCTTTGAGGAA........................................................................................................................................................................................................................ 19 3 18 0.06 1 0 0 1 0
.....................................................................................................................................................................AGGATATGGATCTCATTCGTG................................................................. 21 0 20 0.05 1 1 0 0 0
.................................................................GAGTATTTATCAGTGCAGC....................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004963:3815169-3815419 + dwi_4015 TGCAGGAAGACGAGACGCAATACCAGAAACTCCTGAATGAGTTCCGGGTAGTAAGTATACCCCTTCTCATTAAAAGTCACGTTGACAACACACACATCTCATAACCCTAGGAAGTACATTGTGACCCATATTAATCCACACTATCCACTTGTTCCATTAATGACTTCCTATACCTAGAGTAAGCACTTTAACGCTTGACCCAATATTAACTTCCTATCACATAGCACTTTTCTATTCACCTTTGTAACCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGCAGGAAGACGAGACGCAATACCAGAAACTCCTGAATGAGTTCCGGGTAGTAAGTATACCCCTTCTCATTAAAAGTCACGTTGACAACACACACATCTCATAACCCTAGGAAGTACATTGTGACCCATATTAATCCACACTATCCACTTGTTCCATTAATGACTTCCTATACCTAGAGTAAGCACTTTAACGCTTGACCCAATATTAACTTCCTATCACATAGCACTTTTCTATTCACCTTTGTAACCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................................................................................TATTAATCCACACTATCCACTTGT...................................................................................................2487.63610110500
...............................................................................................................................ATATTAATCCACACTATCCACTTGT...................................................................................................2580.63500050
................................................................................................................................TATTAATCCACACTATCCACTTGTTCCAT..............................................................................................2970.57404000
.....................................................................................................TAACCCTAGGAAGTACATTGTGACCCA...........................................................................................................................27100.40403010
................................................................................................................................TATTAATCCACACTATCCACTTGTT..................................................................................................2580.25200020
..............................................................................................................................CATATTAATCCACACTATCCACTTGT...................................................................................................2680.25200020
................................................................................................................................TATTAATCCACACTATCCACTTGTTCCA...............................................................................................2880.25202000
.....................................................................................................TAACCCTAGGAAGTACATTGTGACC.............................................................................................................................25120.17200020
......................................................................................................................................................................................................CCCAATATTAACTTCCTATCACATAGCA.........................2870.14101000
..................................................................................................................TACATTGTGACCCATATTAATCCACACTA............................................................................................................2980.13101000
...............................................................................................................................ATATTAATCCACACTATCCACTTG....................................................................................................2480.13101000
..................................................................................................................TACATTGTGACCCATATTAATCCACAC..............................................................................................................2780.13101000
............................................................................................................................CCCATATTAATCCACACTATCCACTTGT...................................................................................................2880.13100010
..................................................................................................................................TTAATCCACACTATCCACTTGTTCCAT..............................................................................................2790.11101000
.....................................................................................................................ATTGTGACCCATATTAATCCACACTA............................................................................................................2690.11101000
..................................................................................................................TACATTGTGACCCATATTAATCCAC................................................................................................................2590.11101000
...................................................................................................................................TAATCCACACTATCCACTTGTTCCAT..............................................................................................2690.11101000
........................................................................................................................GTGACCCATATTAATCCACA...............................................................................................................20100.10101000
.....................................................................................................TAACCCTAGGAAGTACATTGTGACCC............................................................................................................................26100.10101000
.....................................................................................................................................................TGTTCCATTAATGACTTCCTATACC.............................................................................25100.10101000
.....................................................................................................TAACCCTAGGAAGTACATTGTGAC..............................................................................................................................24120.08100010

Generated: 05/18/2015 at 09:11 AM