ID:

dwi_40

 Coordinate:

scf2_1100000004513:3453298-3453365 +

 Confidence:

confident

 Class:

Testes-restricted

 Genomic Locale:

3pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.0 -25.8 -25.7

Flybase annnotation

utr3 [utr3_minus_3794]

No Repeatable elements found

Sense Strand Reads

CTCAAAAAATGTACTAAATGTGACCAGAAATGGTAAAAAGTGTAATTTATAGGCTTCGGGGTTGTTGCAAAATGGTTTATTCTAATAACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACATCCCGGGTGGGGAAAAAGAAGGAGTCAATGACCA

***********************************((((((.(((((((.((((..(((((....(((((.((((.................)))).)))))....))))))))).)))))))))))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V118

embryo

 M045

female body

 M020

head

 V117

male body		 V119

head
...............................................................................................TATTGCACCTTTTCCGGCCTCT................................................... 22 0 1 4721.00 4721 2585 2089 17 17 13
...............................................................................................TATTGCACCTTTTCCGGCCTC.................................................... 21 0 1 1125.00 1125 716 381 13 11 4
...............................................................................................TATTGCACCTTTTCCGGCCT..................................................... 20 0 1 1036.00 1036 649 357 13 11 6
...............................................................................................TATTGCACCTTTTCCGGCCTCTA.................................................. 23 0 1 140.00 140 53 85 1 0 1
................................................................................................ATTGCACCTTTTCCGGCCTCT................................................... 21 0 1 131.00 131 5 126 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTC.................................................... 20 0 1 37.00 37 2 35 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCT..................................................... 19 0 1 33.00 33 1 32 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCA................................................... 22 1 1 30.00 30 15 15 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTT.................................................. 23 1 1 26.00 26 11 14 0 1 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAA................................................. 24 0 1 22.00 22 2 20 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAAA................................................ 25 0 1 20.00 20 6 13 1 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTA.................................................... 21 1 1 17.00 17 11 6 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCC...................................................... 19 0 1 16.00 16 8 5 3 0 0
..................................................AGGCTTCGGGGTTGTTGCAAAATG.............................................................................................. 24 0 1 16.00 16 5 7 3 0 1
..............................................................................................ATATTGCACCTTTTCCGGCCTC.................................................... 22 0 1 14.00 14 11 3 0 0 0
...............................................................................................TATTGCACCTTTTCCGTCCTCT................................................... 22 1 1 14.00 14 11 3 0 0 0
...............................................................................................TATTGCACCTTTTCCTGCCTCT................................................... 22 1 1 12.00 12 11 1 0 0 0
..............................................................................................ATATTGCACCTTTTCCGGCCT..................................................... 21 0 1 10.00 10 8 2 0 0 0
..............................................................................................CTATTGCACCTTTTCCGGCCTCT................................................... 23 1 1 9.00 9 7 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTT.................................................... 21 1 1 8.00 8 5 3 0 0 0
...............................................................................................TATTGCACCTTTTCCGCCCTCT................................................... 22 1 1 8.00 8 6 2 0 0 0
.................................................................................................TTGCACCTTTTCCGGCCTCT................................................... 20 0 1 8.00 8 0 7 0 1 0
...............................................................................................TATTGCACCTTTTCCGGCATCT................................................... 22 1 1 8.00 8 7 1 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCTA.................................................. 22 0 1 7.00 7 0 7 0 0 0
...............................................................................................TATTGCACCTTGTCCGGCCTCT................................................... 22 1 1 7.00 7 0 7 0 0 0
...............................................................................................TATTGCACCTTTTCAGGCCTCT................................................... 22 1 1 7.00 7 7 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCC................................................... 22 1 1 7.00 7 4 3 0 0 0
...............................................................................................TATTTCACCTTTTCCGGCCTCT................................................... 22 1 1 6.00 6 3 3 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAAAA............................................... 26 1 1 6.00 6 1 5 0 0 0
...............................................................................................TATTGCACCTCTTCCGGCCTCT................................................... 22 1 1 6.00 6 4 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCAA.................................................. 23 1 1 6.00 6 1 5 0 0 0
...............................................................................................TATTGCACCCTTTCCGGCCTCT................................................... 22 1 1 6.00 6 4 2 0 0 0
...............................................................................................TATTGCACCTTTTCCTGCCTC.................................................... 21 1 1 6.00 6 4 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGACTCT................................................... 22 1 1 5.00 5 3 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCG................................................... 22 1 1 5.00 5 0 2 0 3 0
...............................................................................................TATTGCACCTTTTCCGGCCCCT................................................... 22 1 1 5.00 5 2 3 0 0 0
...............................................................................................TATTGCACCCTTTCCGGCCTC.................................................... 21 1 1 5.00 5 4 1 0 0 0
..............................................................................................GTATTGCACCTTTTCCGGCCTCT................................................... 23 1 1 5.00 5 0 5 0 0 0
...............................................................................................TATTGCACCTTATCCGGCCTCT................................................... 22 1 1 4.00 4 0 4 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTG.................................................. 23 1 1 4.00 4 1 2 1 0 0
...................................................................................................GCACCTTTTCCGGCCTCT................................................... 18 0 1 4.00 4 0 4 0 0 0
...............................................................................................TATTGCACATTTTCCGGCCTCT................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................TATTGCACCTTTCCCGGCCTCT................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTC.................................................. 23 1 1 4.00 4 3 1 0 0 0
...............................................................................................TATTGCACCTTTTCTGGCCTCT................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................CATTGCACCTTTTCCGGCCTCT................................................... 22 1 1 4.00 4 2 2 0 0 0
...............................................................................................TATTGCACCTTTTCCAGCCTCT................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTAT................................................... 22 1 1 4.00 4 4 0 0 0 0
...............................................................................................TATTGCACCTTGTCCGGCCTC.................................................... 21 1 1 4.00 4 0 4 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCAA..................................................... 20 2 1 3.00 3 0 3 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCC..................................................... 20 1 1 3.00 3 2 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCA..................................................... 20 1 1 3.00 3 0 3 0 0 0
...............................................................................................TATTGAACCTTTTCCGGCCTCT................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................TATTGCGCCTTTTCCGGCCTCT................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCATC.................................................... 21 1 1 3.00 3 2 0 0 1 0
...............................................................................................TATTGCACCTTTTCCGTCCT..................................................... 20 1 1 3.00 3 2 1 0 0 0
...............................................................................................TATTGCACTTTTTCCGGCCTCT................................................... 22 1 1 3.00 3 3 0 0 0 0
...............................................................................................TATTGCACCTTTCCCGGCCTC.................................................... 21 1 1 3.00 3 3 0 0 0 0
...............................................................................................TATTGCACCTTATCCGGCCTC.................................................... 21 1 1 3.00 3 0 3 0 0 0
..................................................AGGCTTCGGGGTTGTTGCAAAA................................................................................................ 22 0 1 3.00 3 2 1 0 0 0
...............................................................................................TATTGCACCTTCTCCGGCCTCT................................................... 22 1 1 3.00 3 2 1 0 0 0
...............................................................................................TACTGCACCTTTTCCGGCCTCT................................................... 22 1 1 3.00 3 3 0 0 0 0
..............................................................................................TTATTGCACCTTTTCCGGCCTCT................................................... 23 1 1 3.00 3 0 3 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAAAAA.............................................. 27 2 1 2.00 2 0 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGACCTCT................................................... 22 1 1 2.00 2 2 0 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCTAAAAA.............................................. 26 2 1 2.00 2 0 2 0 0 0
...............................................................................................TATTGCACCTTTTTCGGCCTCT................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGACCTC.................................................... 21 1 1 2.00 2 2 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGACCT..................................................... 20 1 1 2.00 2 1 1 0 0 0
..................................................AGGCTTCGGGGTTGTTGCAAAAT............................................................................................... 23 0 1 2.00 2 0 2 0 0 0
...............................................................................................TGTTGCACCTTTTCCGGCCTCT................................................... 22 1 1 2.00 2 1 1 0 0 0
.................................................................................................TTGCACCTTTTCCGGCCT..................................................... 18 0 1 2.00 2 1 1 0 0 0
...............................................................................................TATTGCACCTTTTCCCGCCTCT................................................... 22 1 1 2.00 2 1 1 0 0 0
..................................................................................................TGCACCTTTTCCGGCCTCT................................................... 19 0 1 2.00 2 0 2 0 0 0
...................................................GGCTTCGGGGTTGTTGCAAAATG.............................................................................................. 23 0 1 2.00 2 0 2 0 0 0
...............................................................................................TATTTCACCTTTTCCGGCCTC.................................................... 21 1 1 2.00 2 1 0 1 0 0
...............................................................................................TATTTCACCTTTTCCGGCCT..................................................... 20 1 1 2.00 2 1 1 0 0 0
...............................................................................................TATTGTACCTTTTCCGGCCTC.................................................... 21 1 1 2.00 2 1 1 0 0 0
...............................................................................................TACTGCACCTTTTCCGGCCT..................................................... 20 1 1 2.00 2 0 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGTCTCT................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................TATTGCACCTTTTCCAGCCT..................................................... 20 1 1 2.00 2 2 0 0 0 0
...............................................................................................TATTGCACCCTTTCCGGCCT..................................................... 20 1 1 2.00 2 2 0 0 0 0
..............................................................................................ATATTGCACCTTTTCCGGCCTCT................................................... 23 0 1 2.00 2 1 1 0 0 0
...............................................................................................TATTGCACCTTTTCTGGCCT..................................................... 20 1 1 2.00 2 1 1 0 0 0
...............................................................................................TATTCCACCTTTTCCGGCCTCT................................................... 22 1 1 2.00 2 2 0 0 0 0
...............................................................................................TATTGCACATCTCCCGGCCT..................................................... 20 3 3 1.67 5 0 5 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTGT................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGCCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATCGCACCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTTCACCTTTTCCGGCCTCAA.................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTGTCCGGCCT..................................................... 20 1 1 1.00 1 0 1 0 0 0
...............................................................................................TCTTGCACCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACTTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTTCACCTTTTCCGGCCTCTA.................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGTACCTTTTCAGGCCTCT................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTCTTCCGGCCTC.................................................... 21 1 1 1.00 1 0 1 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCTAA................................................. 23 0 1 1.00 1 0 1 0 0 0
..............................................................................................ATATTGCACCTTTTCCGGCCTA.................................................... 22 1 1 1.00 1 1 0 0 0 0
........................................................................................CTCGCACTATTGCACCTTTTCCGGCCTCT................................................... 29 3 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGCCCTCTT.................................................. 23 2 1 1.00 1 0 1 0 0 0
.................................................................................................TTGCACCTTTTCCGGCCTCTT.................................................. 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCG...................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCAGGCCTCTA.................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCAACTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................TTTTGCACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTAA................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGCCCTTT................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTCTTCCGGCC...................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACATTTTCCGGCATCT................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCTGCCTAT................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATGGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACATTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATAGCACCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCGGGCCTCT................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTACGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCTCCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 0 0 0 0 1
................................................................................................ATTGCACCTTTTCCGGCCA..................................................... 19 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGTCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................AAGTATTGCACCTTTTCCGGCCTCT................................................... 25 3 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCTTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGC....................................................... 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAT................................................. 24 1 1 1.00 1 1 0 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCC................................................... 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................AATTGCACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAAAAAA............................................. 28 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTCTCCGGCCTC.................................................... 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATCGCACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGCCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................CGATTGCACCTTTTCCGGCCTCT................................................... 23 2 1 1.00 1 0 1 0 0 0
.............................................................................................TCTATTGCACCTTTTCCGGCCT..................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCATCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCTGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTTCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TCTTGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
..................................................AGGCTTCGGGGTTGTTGCAA.................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCAGCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTACACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................GATTGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 0 1 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCA................................................... 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCGCCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCATCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCTAAA................................................ 24 0 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCCCCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTTT................................................. 24 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCT...................................................... 19 1 1 1.00 1 1 0 0 0 0
.................................................................................................TTGCACCTTTTCCGGCCTCTA.................................................. 21 0 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCATCTA.................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCAGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCAGCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
..................................................................................................TGCACCTTTTCCGGCCTC.................................................... 18 0 1 1.00 1 1 0 0 0 0
..............................................................................................GTATTGCACCTTTTCCGGCCT..................................................... 21 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCGTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCTTCCTCT................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTGTCCGGCCTCTA.................................................. 23 1 1 1.00 1 0 1 0 0 0
...............................................................................................TTTTGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 0 1 0 0 0
..............................................................................................TTATTGCACCTTTTCCTGCCTC.................................................... 22 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCAT..................................................... 20 1 1 1.00 1 1 0 0 0 0
............................................................................................CAGTATTGCACCTTTTCCGGCCTCT................................................... 25 2 1 1.00 1 0 1 0 0 0
..............................................................................................TTATTGCACCTTTTCCGGCCTC.................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAGCCT.............................................. 27 3 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGAACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGACT..................................................... 20 1 1 1.00 1 0 1 0 0 0
................................................................................................ATTGCACCTCTTCCGGCCT..................................................... 19 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGGCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................................ATTGCACCTTTTCCGGCCTCTG.................................................. 22 1 1 1.00 1 0 1 0 0 0
.................................................................................................TTGCACCTTTTCCGGCCTC.................................................... 19 0 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCTTCCT..................................................... 20 2 1 1.00 1 1 0 0 0 0
...........................................................................................ACGCTATTGCACCTTTTCCGGCCTC.................................................... 25 3 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTATAA............................................... 26 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTACACCTTTTCCGGCCTCTA.................................................. 23 1 1 1.00 1 0 1 0 0 0
...............................................................................................CATTGCACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTACACCTTTTCCGGCCTTT................................................... 22 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGTCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TCTTGCACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTAAAA................................................. 24 2 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTATTCCGGCCTA.................................................... 21 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGTCCTCTT.................................................. 23 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCGT.................................................. 23 2 1 1.00 1 0 0 0 1 0
...............................................................................................TATTGGACCTTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................CATTGCACCTTTTCCGGCCT..................................................... 20 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTTG................................................. 24 2 1 1.00 1 1 0 0 0 0
..............................................................................................CTATTGCACCTTTTCCGGCCT..................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACATTTTCCGGCCTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCAACTTTTCCGGCCTCTA.................................................. 23 1 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTATAAAA............................................. 28 3 1 1.00 1 0 1 0 0 0
.............................................................................................GCTATTGCACCTTTTCCGGCCTCT................................................... 24 2 1 1.00 1 0 1 0 0 0
......................................................TTCGGGGTTGTTGCAAAATGGT............................................................................................ 22 0 1 1.00 1 1 0 0 0 0
................................................................................................ATTTCACCTTTTCCGGCCTCT................................................... 21 1 1 1.00 1 0 1 0 0 0
..........................................................GGGTTGTTGCAAAATGGT............................................................................................ 18 0 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCTCTAG................................................. 24 1 1 1.00 1 0 1 0 0 0
................................................................................................TATGCACCTTTTCCGGCCTCT................................................... 21 2 1 1.00 1 1 0 0 0 0
...............................................................................................TATTGCACCTTTTCCAGCCTC.................................................... 21 1 1 1.00 1 0 0 0 1 0
...............................................................................................TATTGCACCTTTTCCGGACTC.................................................... 21 1 1 1.00 1 1 0 0 0 0
..............................................................................................CTATTGCACCTTTTCCGGCCTC.................................................... 22 1 1 1.00 1 1 0 0 0 0
............................................................................................GGCTATTGCACCTTTTCCGGCCTCT................................................... 25 3 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCACCTTTTCCTTCCTC.................................................... 21 2 1 1.00 1 1 0 0 0 0
..................................................................................................TTCACCTTTTCCGGCCTCT................................................... 19 1 1 1.00 1 0 1 0 0 0
.................................................................................................TATCACCTTTTCCGGCCTCT................................................... 20 2 1 1.00 1 1 0 0 0 0
...............................................................................................AATTGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 0 1 0 0 0
...............................................................................................TATTGCATCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
...............................................................................................TAATGCACCTTTTCCGGCCTCT................................................... 22 1 1 1.00 1 1 0 0 0 0
................................................................................................ATTGCACCTTTGCCGGCCTC.................................................... 20 1 1 1.00 1 0 1 0 0 0
................................................................................................TATTCACCTTTTCCGGCCTCT................................................... 21 3 4 0.75 3 1 2 0 0 0
...............................................................................................TATTGCACCTTTTCCGGCCAAA................................................... 22 3 2 0.50 1 0 1 0 0 0
.................................................................................................TTGCACCTGTCCCGGCCTATAAA................................................ 23 3 2 0.50 1 0 1 0 0 0
...............................................................................................TATTGCACATTCACCGGCCT..................................................... 20 3 4 0.50 2 0 2 0 0 0
...............................GGTAACAAGTGTGATTTAAAG.................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
................................................ATGGGGTTCGGGGCTGTTGC.................................................................................................... 20 3 10 0.30 3 0 1 0 2 0
...............................................................................................TATTGCACACTTTCCGGCCTTT................................................... 22 3 5 0.20 1 0 1 0 0 0
................................................................................................TATTCACCTTTTCCGGCCTC.................................................... 20 3 6 0.17 1 0 1 0 0 0
..............................................TTATAGGTTCCGGGGTCG........................................................................................................ 18 3 20 0.15 3 0 3 0 0 0
...............................................................................................TATTGCACTTTTTCTTGCCTCT................................................... 22 3 14 0.14 2 0 1 1 0 0
..............................................TTAGAGGCTCCGGGGTCG........................................................................................................ 18 3 14 0.14 2 0 1 0 0 1
................................................................................................ATTGCACTTTTTCTTGCCTCTA.................................................. 22 3 8 0.13 1 0 1 0 0 0
....................................................................................................................................CATCACGGGTGAGGAAAA.................. 18 2 9 0.11 1 0 1 0 0 0
......................................................TTCGGGGTTGTTGCAAAATAAA............................................................................................ 22 3 9 0.11 1 1 0 0 0 0
...............................................................................................TATTGCACTTATACCGGCC...................................................... 19 3 11 0.09 1 0 0 1 0 0
.......................................................................ATGGTTTATTGTAAGAAC............................................................................... 18 2 13 0.08 1 0 0 1 0 0
...........................................................................................................................AATTATGAACATCCCGGCT.......................... 19 3 19 0.05 1 0 0 0 0 1
...........................................................................................................................................AGTGGGGAAAAAGAGGGAG.......... 19 2 20 0.05 1 0 1 0 0 0
...............................................TAGAGGTTTCGGGGTTGA....................................................................................................... 18 3 20 0.05 1 0 1 0 0 0
...............................................TATCGGGTTCGGGGCTGT....................................................................................................... 18 3 20 0.05 1 0 0 0 1 0
...................................................................................................................................................CAAAGAAGAAGTGAATGACC. 20 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

GAGTTTTTTACATGATTTACACTGGTCTTTACCATTTTTCACATTAAATATCCGAAGCCCCAACAACGTTTTACCAAATAAGATTATTGAGGGGTATAACGTGGAAAAGGCCGGAGATTTAATTGAAAACTTGTAGGGCCCACCCCTTTTTCTTCCTCAGTTACTGGT

************************************((((((.(((((((.((((..(((((....(((((.((((.................)))).)))))....))))))))).)))))))))))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total M045

female body

 M020

head
.............................................................................................GTATAACGTGGAAAAGGCCGGAG.................................................... 23 0 1 1.00 1 1 0
................................................................................................................................................CCACTTTGTTCCTCAGTTAC.... 20 3 11 0.09 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droWil2 scf2_1100000004513:3453248-3453415 + dwi_40 confident CTCAAAAAATGTACTAAATGTGACCAGAAATGGTAA-----------------------AAAGTGTAATTTATAGG--------------------------------CTTCGGGGTTGTTGCAAAATG---GTTTATTCTAAT-------AACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACATCCCG-------------------GGTGGGGAAAA--AGAAGGAGTCAATGACCA
droGri2 scaffold_15245:17564374-17564608 + dgr_43 confident AATAAA---AGTGTTAAATTTGC--AGTTC--GTGTTTAGTGTTTTTTCCCGCTTAAGCATCTTGCAATTTATATGGCTTGCAGTTATCTGCATTAACCATTTTCAGGAT-GGAAGCTGTGACAATATGTAGGT----TTTAATTAATTTATATTTCATATATTGCACACCTCCCGGCCTATAAAT-GATTCTTGAGCTCCTCGATTTTGTTTATATATCTAAAGTGTTGAAAATTGGAAAGCGTCAA------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTCAAAAAATGTACTAAATGTGACCAGAAATGGTAA-----------------------AAAGTGTAATTTATAGG--------------------------------CTTCGGGGTTGTTGCAAAATG---GTTTATTCTAAT-------AACTCCCCATATTGCACCTTTTCCGGCCTCTAAATTAACTTTTGAACATCCCG-------------------GGTGGGGAAAA--AGAAGGAGTCAATGACCASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCT........................................................................2214721.00472117208917258513
................................................................................................................................................................TATTGCACCTTTTCCGGCCTC.........................................................................2111125.00112513381117164
................................................................................................................................................................TATTGCACCTTTTCCGGCCT..........................................................................2011036.00103613357116496
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTA.......................................................................231140.001401850531
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCT........................................................................211131.001310126050
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTC.........................................................................20137.0037035020
.................................................................................................................................................................ATTGCACCTTTTCCGGCCT..........................................................................19133.0033032010
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCA........................................................................22130.00300150150
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTT.......................................................................23126.00260141110
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAA......................................................................24122.0022020020
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAAA.....................................................................25120.0020113060
................................................................................................................................................................TATTGCACCTTTTCCGGCCTA.........................................................................21117.0017060110
................................................................................................................................................................TATTGCACCTTTTCCGGCC...........................................................................19116.001635080
.........................................................................AGG--------------------------------CTTCGGGGTTGTTGCAAAATG---..........................................................................................................................24116.001637051
...............................................................................................................................................................ATATTGCACCTTTTCCGGCCTC.........................................................................22114.0014030110
...............................................................................................................................................................ATATTGCACCTTTTCCGGCCT..........................................................................21110.001002080
................................................................................................................................................................TATTGCACCTTTTCCGGCCTT.........................................................................2118.00803050
..................................................................................................................................................................TTGCACCTTTTCCGGCCTCT........................................................................2018.00807100
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCTA.......................................................................2217.00707000
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCC........................................................................2217.00703040
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAAAA....................................................................2616.00605010
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCG........................................................................2215.00502300
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTG.......................................................................2314.00412010
....................................................................................................................................................................GCACCTTTTCCGGCCTCT........................................................................1814.00404000
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTC.......................................................................2314.00401030
................................................................................................................................................................TATTGCACCTTTTCCGGCAA..........................................................................2013.00303000
................................................................................................................................................................TATTGCACCTTTTCCGGCCC..........................................................................2013.00301020
................................................................................................................................................................TATTGCACCTTTTCCGGCCA..........................................................................2013.00303000
.........................................................................AGG--------------------------------CTTCGGGGTTGTTGCAAAA...............................................................................................................................2213.00301020
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAAAAA...................................................................2712.00202000
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCTAAAAA...................................................................2612.00202000
.........................................................................AGG--------------------------------CTTCGGGGTTGTTGCAAAAT..............................................................................................................................2312.00202000
..................................................................................................................................................................TTGCACCTTTTCCGGCCT..........................................................................1812.00201010
...................................................................................................................................................................TGCACCTTTTCCGGCCTCT........................................................................1912.00202000
..........................................................................GG--------------------------------CTTCGGGGTTGTTGCAAAATG---..........................................................................................................................2312.00202000
...............................................................................................................................................................ATATTGCACCTTTTCCGGCCTCT........................................................................2312.00201010
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCTAA......................................................................2311.00101000
...............................................................................................................................................................ATATTGCACCTTTTCCGGCCTA.........................................................................2211.00100010
..................................................................................................................................................................TTGCACCTTTTCCGGCCTCTT.......................................................................2111.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGCG...........................................................................1911.00100010
................................................................................................................................................................TATTGCACCTTTTCCGGCCTAA........................................................................2211.00101000
.................................................................................................................................................................ATTGCACCTTTTCCGGCCA..........................................................................1911.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGC............................................................................1811.00100010
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAT......................................................................2411.00100010
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCC........................................................................2111.00101000
.........................................................................AGG--------------------------------CTTCGGGGTTGTTGCAA.................................................................................................................................2011.00100010
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCA........................................................................2111.00101000
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCTAAA.....................................................................2411.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTTT......................................................................2411.00100010
................................................................................................................................................................TATTGCACCTTTTCCGGCT...........................................................................1911.00100010
..................................................................................................................................................................TTGCACCTTTTCCGGCCTCTA.......................................................................2111.00101000
...................................................................................................................................................................TGCACCTTTTCCGGCCTC.........................................................................1811.00100010
.................................................................................................................................................................ATTGCACCTTTTCCGGCCTCTG.......................................................................2211.00101000
..................................................................................................................................................................TTGCACCTTTTCCGGCCTC.........................................................................1911.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCGT.......................................................................2311.00100100
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTTG......................................................................2411.00100010
.............................................................................................................TTCGGGGTTGTTGCAAAATG---GT........................................................................................................................2211.00100010
.................................................................................................................GGGTTGTTGCAAAATG---GT........................................................................................................................1811.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGCCTCTAG......................................................................2411.00101000
................................................................................................................................................................TATTGCACCTTTTCCGGCCAAA........................................................................2220.50101000
.............................................................................................................TTCGGGGTTGTTGCAAAATA---AA........................................................................................................................2290.11100010
droGri2
AATAAA---AGTGTTAAATTTGC--AGTTC--GTGTTTAGTGTTTTTTCCCGCTTAAGCATCTTGCAATTTATATGGCTTGCAGTTATCTGCATTAACCATTTTCAGGAT-GGAAGCTGTGACAATATGTAGGT----TTTAATTAATTTATATTTCATATATTGCACACCTCCCGGCCTATAAAT-GATTCTTGAGCTCCTCGATTTTGTTTATATATCTAAAGTGTTGAAAATTGGAAAGCGTCAA------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................................................................................................TATTGCACACCTCCCGGCCTAT........................................................................22120.0020200
................................................................................................................................................................TATTGCACACCTCCCGGCCT..........................................................................2019.00990
................................................................................................................................................................TATTGCACACCTCCCGGCCTA.........................................................................2115.00550
.........................................................................................................AGGAT-GGAAGCTGTGACAATAT..............................................................................................................................2215.00505
.........................................................................................................AGGAT-GGAAGCTGTGACAATATG.............................................................................................................................2314.00404
................................................................................................................................................................TATTGCACACCTCCCGGCCTT.........................................................................2113.00330
.........................................................................................................AGGAT-GGAAGCTGTGACAAT................................................................................................................................2013.00312
.........................................................................................................AGGAT-GGAAGCTGTGACAA.................................................................................................................................1912.00211
.........................................................................................................AGGAT-GGAAGCTGTGACAATA...............................................................................................................................2112.00202
.................................................................................................................................................................ATTGCACACCTCCCGGCCT..........................................................................1912.00220
.................................................................................................................................................................ATTGCACACCTCCCGGCCTAT........................................................................2111.00110
................................................................................................................................................................TATTGCACACCTCCCGGCC...........................................................................1911.00110
.........................................................................................................AGGAT-GGAAGCTGTGACAATATGT............................................................................................................................2411.00101
.................................................................................................................................................................ATTGCACACCTCCCGGCCTA.........................................................................2011.00110
.........................................................................................................AGGAT-GGAAGCTGTGACA..................................................................................................................................1811.00101

Generated: 10/20/2015 at 06:48 PM