ID:

dwi_3989

 Coordinate:

scf2_1100000004963:2531809-2531959 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.2 -11.2 -10.9

Flybase annnotation

CDS [Dwil\GK15406-cds]; exon [dwil_GLEANR_1566:6]; intron [Dwil\GK15406-in]

No Repeatable elements found

mature
star
  1. scf2_1100000004943:3676720-3676743 -
  2. scf2_1100000004909:11285104-11285127 -
  3. scf2_1100000004963:2529115-2529138 +
  4. dwi_3989  scf2_1100000004963:2531866-2531889 -
  5. scf2_1100000004963:2565514-2565537 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#############################---------------------
CTAACAGCGGCCAGAGTTACGTGGCCAAAGGTCGAGGAGTGTTTGCTGCGAATTTTCAAGCTTCTGGAACTGCAGAACTCTGATCTTAAGACGGATCTTAAGAAGAAAATAGTATCAAGTGAGAGAAAATAGTATCAAGCACACAAAATTGTTGCCTTCATAGTAAGACACAACCGGCTTAATTTGTTTCTTGTTGCCTAGACCAGCAACTTTTCTGCTATGAGATCTGAATCGGCCAACGTTACATCAGA
***************************************************************(((......)))...(((..((((((((....)))))))))))............(((...((........))...)))..*********************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M020
head
 V119
head
 M045
female body
 V118
embryo
..........................AAAGGTCGAGGAGTGTTTGCT............................................................................................................................................................................................................ 21 0 2 42.50 85 65 15 5 0 0
...................CGTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 20 0 4 22.50 90 85 4 1 0 0
...............................TCGAGGAGTGTTTGCTGCGAA....................................................................................................................................................................................................... 21 0 2 22.00 44 34 10 0 0 0
...............................................................CTGGAACTGCAGAACTCTGATC...................................................................................................................................................................... 22 0 1 20.00 20 0 19 1 0 0
.........................CAAAGGTCGAGGAGTGTTTGC............................................................................................................................................................................................................. 21 0 4 15.50 62 52 9 1 0 0
...................CGTGGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 22 0 4 13.75 55 54 0 1 0 0
....................GTGGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 21 0 4 11.50 46 43 2 1 0 0
..............................GTCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................ 21 0 2 10.50 21 17 2 2 0 0
............AGAGTTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 21 0 20 9.85 197 187 0 10 0 0
...ACAGCGGCCAGAGTTACGTGG................................................................................................................................................................................................................................... 21 0 6 8.83 53 51 0 2 0 0
..................ACGTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 21 0 4 8.75 35 34 1 0 0 0
...................CGTGGCCAAAGGTCGAGGAGT................................................................................................................................................................................................................... 21 0 4 8.75 35 34 1 0 0 0
..........................AAAGGTCGAGGAGTGTTTGCTC........................................................................................................................................................................................................... 22 1 2 8.00 16 10 6 0 0 0
........................CCAAAGGTCGAGGAGTGTTTG.............................................................................................................................................................................................................. 21 0 4 7.75 31 31 0 0 0 0
..........................AAAGGTCGAGGAGTGTTTGC............................................................................................................................................................................................................. 20 0 4 7.25 29 25 3 1 0 0
....CAGCGGCCAGAGTTACGTGGC.................................................................................................................................................................................................................................. 21 0 6 6.00 36 31 0 5 0 0
..........................AAAGGTCGAGGAGTGTTTGCTT........................................................................................................................................................................................................... 22 1 2 5.50 11 9 1 1 0 0
.....................TGGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 20 0 5 4.60 23 22 0 1 0 0
.............GAGTTACGTGGCCAAAGGTCG......................................................................................................................................................................................................................... 21 0 20 4.55 91 89 0 2 0 0
...................CGTGGCCAAAGGTCGAGGA..................................................................................................................................................................................................................... 19 0 8 4.38 35 35 0 0 0 0
..........................AAAGGTCGAGGAGTGTTTGCTG........................................................................................................................................................................................................... 22 0 2 4.00 8 8 0 0 0 0
......................................................................TGCAGAACTCTGATCTTAAGACGGATC.......................................................................................................................................................... 27 0 1 4.00 4 0 4 0 0 0
.....................TGGCCAAAGGTCGAGGAGTGT................................................................................................................................................................................................................. 21 0 4 3.50 14 14 0 0 0 0
..............AGTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................ 21 0 20 3.15 63 63 0 0 0 0
......................................GTGTTTGCTGCGAATTTTCGAG............................................................................................................................................................................................... 22 1 1 3.00 3 1 0 2 0 0
........................................GTTTGCTGCGAATTTTCGAG............................................................................................................................................................................................... 20 1 1 3.00 3 2 1 0 0 0
.....................................AGTGTTTGCTGCGAATTTTCG................................................................................................................................................................................................. 21 1 1 3.00 3 3 0 0 0 0
...............................TCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................ 20 0 2 3.00 6 6 0 0 0 0
..................ACGTGGCCAAAGGTCGAGGA..................................................................................................................................................................................................................... 20 0 8 2.88 23 22 1 0 0 0
.........................CAAAGGTCGAGGAGTGTTTG.............................................................................................................................................................................................................. 20 0 4 2.75 11 10 1 0 0 0
................................CGAGGAGTGTTTGCTGCGAA....................................................................................................................................................................................................... 20 0 2 2.50 5 4 1 0 0 0
...............................................................CTGGAACTGCAGAACTCTGATCC..................................................................................................................................................................... 23 1 4 2.50 10 0 9 1 0 0
.................................GAGGAGTGTTTGCTGCGAATT..................................................................................................................................................................................................... 21 0 2 2.00 4 4 0 0 0 0
..................................AGGAGTGTTTGCTGCGAATTT.................................................................................................................................................................................................... 21 0 2 2.00 4 4 0 0 0 0
................................CGAGGAGTGTTTGCTGCGAAT...................................................................................................................................................................................................... 21 0 2 2.00 4 3 1 0 0 0
...............................TCGAGGAGTGTTTGCTGCGAAA...................................................................................................................................................................................................... 22 1 2 2.00 4 1 3 0 0 0
....................................GAGTGTTTGCTGCGAATTTTC.................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0
................................................................CTGAACTGCAGAACTCTGATC...................................................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0
...........CAGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................ 20 0 20 1.75 35 34 0 1 0 0
.................TACGTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 22 0 4 1.75 7 6 1 0 0 0
.................TACGTGGCCAAAGGTCGAGGA..................................................................................................................................................................................................................... 21 0 8 1.63 13 13 0 0 0 0
...............................TCGAGGAGTGTTTGCTGCG......................................................................................................................................................................................................... 19 0 2 1.50 3 3 0 0 0 0
..........................AAGGGTCGAGGAGTGTTTGCT............................................................................................................................................................................................................ 21 1 2 1.50 3 3 0 0 0 0
....................GTGGCCAAAGGTCGAGGAGT................................................................................................................................................................................................................... 20 0 4 1.50 6 6 0 0 0 0
.................................GAGGAGTGTTTGCTGCGAA....................................................................................................................................................................................................... 19 0 2 1.50 3 3 0 0 0 0
..................................AGGAGTGTTTGCTGCGAATT..................................................................................................................................................................................................... 20 0 2 1.50 3 3 0 0 0 0
................................CGAGGAGTGTTTGCTGCGAATT..................................................................................................................................................................................................... 22 0 2 1.50 3 3 0 0 0 0
..............................................TGCGAATTTTCGAGCTCCTGG........................................................................................................................................................................................ 21 2 11 1.45 16 16 0 0 0 0
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACG.......... 26 0 11 1.36 15 1 0 0 12 2
CTAACAGCGGCCAGAGTTACG...................................................................................................................................................................................................................................... 21 0 6 1.33 8 7 0 1 0 0
.............................................CTGCGAATTTTCGAGCTCCTG......................................................................................................................................................................................... 21 2 11 1.27 14 13 1 0 0 0
........................................GTTTGCTGCGACTTTTCGAG............................................................................................................................................................................................... 20 2 1 1.00 1 0 0 1 0 0
..................ACGTGGCCAAAGGTCGAGGAGT................................................................................................................................................................................................................... 22 0 4 1.00 4 4 0 0 0 0
..................................AGGAGTGTTTGCTGCGAATTTT................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTT.................................................................................................................................................................................................................. 22 1 4 1.00 4 4 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................ 24 1 4 1.00 4 3 0 1 0 0
...........................AAGGTCGAGGAGTGTTTGCTG........................................................................................................................................................................................................... 21 0 2 1.00 2 2 0 0 0 0
.......................................CGTTTGCTGCGAATTTTCGAGC.............................................................................................................................................................................................. 22 2 1 1.00 1 1 0 0 0 0
.TAACAGCGGCCAGAGTTACG...................................................................................................................................................................................................................................... 20 0 6 1.00 6 4 0 2 0 0
..........................AAAGGTCGAGGAGTGTTTGCC............................................................................................................................................................................................................ 21 1 4 1.00 4 1 3 0 0 0
.......................................CGTTTGCTGCGAATTTTCGAG............................................................................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0
................................CGAGGAGTGTTTGCTGCGAATTTTCGAG............................................................................................................................................................................................... 28 1 1 1.00 1 1 0 0 0 0
..........................................................................GAACTCTGATCTTAAGACGGATCT......................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
...............................................................CTGGAACTGCAGAATTCTGATC...................................................................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0
..........................AAAGGTCGAGGAGTGTTTG.............................................................................................................................................................................................................. 19 0 4 1.00 4 4 0 0 0 0
............AGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................ 19 0 20 0.95 19 17 0 2 0 0
...............GTTACGTGGCCAAAGGTCGAG....................................................................................................................................................................................................................... 21 0 10 0.90 9 9 0 0 0 0
................TTACGTGGCCAAAGGTCGAGG...................................................................................................................................................................................................................... 21 0 7 0.86 6 6 0 0 0 0
............AGAGTTACGTGGCCAAAGGTCG......................................................................................................................................................................................................................... 22 0 20 0.85 17 17 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTC.................................................................................................................................................................................................................. 22 1 4 0.75 3 2 0 1 0 0
............AGAGTTACGTGGCCAAAGGT........................................................................................................................................................................................................................... 20 0 20 0.75 15 15 0 0 0 0
.TAACAGCGGCCAGAGTTACGT..................................................................................................................................................................................................................................... 21 0 6 0.67 4 4 0 0 0 0
..........CCAGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................ 21 0 20 0.65 13 13 0 0 0 0
..............AGTTACGTGGCCAAAGGTCG......................................................................................................................................................................................................................... 20 0 20 0.60 12 12 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTTC................................................................................................................................................................................................................. 23 2 5 0.60 3 3 0 0 0 0
.....................................................................................................................................................................................................................TCTGCTATGAGATCTGAATCGGCCAACG.......... 28 0 10 0.60 6 0 0 0 6 0
..............................GTCGAGGAGTGTTTTCTGCGA........................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
...............................TCGAGGAGTGTTTGCTGCGAG....................................................................................................................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
....CAGCGGCCAGAGTTACGTGG................................................................................................................................................................................................................................... 20 0 6 0.50 3 3 0 0 0 0
.........................CAAAGGTCGAGGAGTGTTTGCC............................................................................................................................................................................................................ 22 1 4 0.50 2 1 1 0 0 0
..................ACGTGGCCAAAGGTCGAGG...................................................................................................................................................................................................................... 19 0 8 0.50 4 2 0 2 0 0
...............................TCGAGGAGTTTTTGCTGCGAA....................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
...............................TCGAGGAGTCTTTGCTGCGAA....................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
.......................GCCAAAGGTCGAGGAGTGTTT............................................................................................................................................................................................................... 21 0 4 0.50 2 2 0 0 0 0
........................CCAAAGGTCGAGGAGTGTTTGCTGCG......................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
.................................GAGGAGTGTTTACTGCGAATT..................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..........................AAAGGTCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0 0
..........................AAAGATCGAGGAGTGTTTGCT............................................................................................................................................................................................................ 21 1 2 0.50 1 0 1 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTGT................................................................................................................................................................................................................. 23 0 4 0.50 2 2 0 0 0 0
...............................TCGAGGAGTGTTTGCTGCGAAT...................................................................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0
.....................TGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................ 22 1 4 0.50 2 1 1 0 0 0
..........................AAAGGTCGAGGAGCGTTTGCT............................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
..........................AAAGGCCGAGGAGTGTTTGCTG........................................................................................................................................................................................................... 22 1 2 0.50 1 1 0 0 0 0
...............................TCGAGGAGTGTTGGCTGCGAA....................................................................................................................................................................................................... 21 1 2 0.50 1 0 1 0 0 0
....................GTGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................ 23 1 4 0.50 2 2 0 0 0 0
...............................TCGAGGGGTGTTTGCTGCG......................................................................................................................................................................................................... 19 1 2 0.50 1 1 0 0 0 0
....................GTGGCCAAAGGTCGAGGAGTGT................................................................................................................................................................................................................. 22 0 4 0.50 2 2 0 0 0 0
................TTACGTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 23 0 4 0.50 2 2 0 0 0 0
..............................GTCGAGGAGTGTTTGCTGCAA........................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
................................CGAGGAGTCTTTGCTGCGAAT...................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..............................GTCGAGGAGTGTTTGCTGCGAA....................................................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
..........CCAGAGTTACGTGGCCAAAG............................................................................................................................................................................................................................. 20 0 20 0.50 10 9 0 1 0 0
...................................................................AACTGCAGAACTCTGATCCT.................................................................................................................................................................... 20 1 4 0.50 2 0 2 0 0 0
...............................TCGAGGAGTGTTTGCTCCGAA....................................................................................................................................................................................................... 21 1 2 0.50 1 1 0 0 0 0
..........................AAAGGTCGAGGGGTGTTTGCT............................................................................................................................................................................................................ 21 1 2 0.50 1 1 0 0 0 0
...........CAGAGTTACGTGGCCAAAGGT........................................................................................................................................................................................................................... 21 0 20 0.45 9 8 0 1 0 0
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAACG.......... 23 0 12 0.42 5 0 0 0 4 1
...............GTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................ 20 0 20 0.40 8 8 0 0 0 0
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAACGTTAC...... 27 0 5 0.40 2 1 0 0 1 0
....CAGCGGCCAGAGTTGCGTGGC.................................................................................................................................................................................................................................. 21 1 8 0.38 3 3 0 0 0 0
CTAACAGCGGCCAGAGTTAC....................................................................................................................................................................................................................................... 20 0 6 0.33 2 2 0 0 0 0
..AACAGCGGCCAGAGTTACGTG.................................................................................................................................................................................................................................... 21 0 6 0.33 2 2 0 0 0 0
...ACAGCGGCCAGAGTTACGTGGT.................................................................................................................................................................................................................................. 22 1 6 0.33 2 2 0 0 0 0
................................................CGCATTTTCAAGCTTCTGGAA...................................................................................................................................................................................... 21 1 3 0.33 1 0 0 0 0 1
............AGAGTTACGTGGCCAAAGGTCC......................................................................................................................................................................................................................... 22 1 20 0.30 6 6 0 0 0 0
...............GTTACGTGGCCAAAGGTCGAGG...................................................................................................................................................................................................................... 22 0 7 0.29 2 2 0 0 0 0
...............................................................................................................................................................................................................................GATCTGAATCGGCCAACGTTA....... 21 0 8 0.25 2 2 0 0 0 0
..........................AAAGGTCTAGGAGTGTTTG.............................................................................................................................................................................................................. 19 1 4 0.25 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGCG.................................................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0 0
..................ACGTGGCCAAAGGTCGAGGAGTTTC................................................................................................................................................................................................................ 25 2 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGTGTTTGC............................................................................................................................................................................................................. 22 0 4 0.25 1 1 0 0 0 0
....................GTGGCCAAAGGTAGAGGAGTGTCC............................................................................................................................................................................................................... 24 3 4 0.25 1 0 1 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTA.................................................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGTGTTTGTC............................................................................................................................................................................................................ 23 2 4 0.25 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGCGGAG.................................................................................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0
.......................GCCCAAGGTCGAGGAGTGTTT............................................................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0 0
....................GTGGCCACAGGTCGAGGAGTG.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGA................................................................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0 0
...................CGTGGCGAAAGGTCGAGGAG.................................................................................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0
..................ACGTGGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0 0
.........................CAAACGTCGAGGAGTGTTTGC............................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
.....................TGGCCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................ 22 0 4 0.25 1 1 0 0 0 0
...................CGTGGCCAAAGGCCGAGGAG.................................................................................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0
....................GTGGCCAAGGGTCGAGGAGTG.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
.........................CGAGGGTCGAGGAGTGTTTGC............................................................................................................................................................................................................. 21 2 4 0.25 1 1 0 0 0 0
.........................CAAAGGTCGAGGAGTGTTCG.............................................................................................................................................................................................................. 20 1 4 0.25 1 1 0 0 0 0
......................GGCCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGTGTTT............................................................................................................................................................................................................... 20 0 4 0.25 1 0 1 0 0 0
...................CGTGGCCAAAGGTTGAGGAG.................................................................................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0 0
....................GTGGCCAAAGGTCGAGGAGTA.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGCGTTTG.............................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................ 19 0 4 0.25 1 0 1 0 0 0
....................GTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 19 0 4 0.25 1 1 0 0 0 0
....................GTGGCCAAAGGTCGAGGAGTC.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
.................TACGTGGCCAAAGGTCGAGG...................................................................................................................................................................................................................... 20 0 8 0.25 2 2 0 0 0 0
........................CCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................ 19 1 4 0.25 1 1 0 0 0 0
....................GTAGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
....................GTGGCCAAAGGTCGAGGAGCG.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
........................CCAAAGGTCGAGGAGTGTTTT.............................................................................................................................................................................................................. 21 1 4 0.25 1 0 1 0 0 0
............AGAGTTACGTGGCCAAAGGTCT......................................................................................................................................................................................................................... 22 1 20 0.25 5 5 0 0 0 0
...................................................................AACTGCAGAACTCTGATCC..................................................................................................................................................................... 19 1 4 0.25 1 0 1 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTGTTC............................................................................................................................................................................................................... 25 1 4 0.25 1 1 0 0 0 0
....................GTGGCCAAAGGTCGCGGAGTG.................................................................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGAGGAGTTTC................................................................................................................................................................................................................ 24 2 4 0.25 1 1 0 0 0 0
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACGTT........ 28 0 4 0.25 1 0 0 0 0 1
...................CTTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 20 1 5 0.20 1 1 0 0 0 0
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCA............. 26 0 15 0.20 3 0 0 0 3 0
...................CCTGGCCAAAGGTCGAGGAG.................................................................................................................................................................................................................... 20 1 5 0.20 1 1 0 0 0 0
......................GGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 19 0 5 0.20 1 1 0 0 0 0
........................................................................................................................GAGAGAAAATAGTATCAAGCACAC........................................................................................................... 24 0 5 0.20 1 0 1 0 0 0
...........CAGAGTTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 22 0 20 0.20 4 4 0 0 0 0
........................CCAAAGGTCGAGGAGGGTTTT.............................................................................................................................................................................................................. 21 2 5 0.20 1 0 1 0 0 0
.....................TGGCCAAGGGTCGAGGAGTG.................................................................................................................................................................................................................. 20 1 5 0.20 1 1 0 0 0 0
................TTACGTGGCCAAAGGTCGAG....................................................................................................................................................................................................................... 20 0 10 0.20 2 1 0 1 0 0
....................CTGGCCAAAGGTCGAGGAGTG.................................................................................................................................................................................................................. 21 1 5 0.20 1 1 0 0 0 0
........................................................................................................................GAGAGAAAATAGTATCAAGCA.............................................................................................................. 21 0 5 0.20 1 1 0 0 0 0
.....................TGGCCAAAGGTCGGGGAGTG.................................................................................................................................................................................................................. 20 1 5 0.20 1 1 0 0 0 0
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACGT......... 27 0 11 0.18 2 0 1 0 1 0
........................................................................................................................................................................................................................GCTATGAGATCTGAATCGGCCAACG.......... 25 0 11 0.18 2 0 0 0 2 0
..............................................TGCGAATTTTCGAGCTCCTG......................................................................................................................................................................................... 20 2 11 0.18 2 2 0 0 0 0
.....................TGGCCAAAGGTCGATGAGT................................................................................................................................................................................................................... 19 1 6 0.17 1 1 0 0 0 0
.............................................................................................................................................................................................................................GAGATCTGAATCGGCCAACGTTACA..... 25 0 6 0.17 1 0 0 0 1 0
.TAACAGCGGCCAGAGTTACGTGG................................................................................................................................................................................................................................... 23 0 6 0.17 1 1 0 0 0 0
.TAACAGCGGCCAGAGTTACGTGGC.................................................................................................................................................................................................................................. 24 0 6 0.17 1 1 0 0 0 0
.TAACAGCGGCCAGAGTTACGTG.................................................................................................................................................................................................................................... 22 0 6 0.17 1 1 0 0 0 0
...ACAGCGGCCAGAGTTACGTGGTT................................................................................................................................................................................................................................. 23 2 6 0.17 1 1 0 0 0 0
....CAGCGGCCAGCGTTACGTGGC.................................................................................................................................................................................................................................. 21 1 6 0.17 1 1 0 0 0 0
..........CCAGAGTTACGTGGCCAAAGGT........................................................................................................................................................................................................................... 22 0 20 0.15 3 3 0 0 0 0
..........CCAGAGTTACGTGGCCAAA.............................................................................................................................................................................................................................. 19 0 20 0.15 3 3 0 0 0 0
............AGAGTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................ 23 0 20 0.15 3 3 0 0 0 0
..........CCAGAGTTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 23 0 20 0.15 3 3 0 0 0 0
...................CGTGGCCAAAGGTCGAGCAGTG.................................................................................................................................................................................................................. 22 1 7 0.14 1 1 0 0 0 0
................TTACGTGGCCAAAGGTCGAGGT..................................................................................................................................................................................................................... 22 1 7 0.14 1 1 0 0 0 0
....CGGCGGCCGGAGTTACGTGGC.................................................................................................................................................................................................................................. 21 2 7 0.14 1 1 0 0 0 0
............................................................................................................................................................................................TCTTGTTGCCTAGACCAGC............................................ 19 0 7 0.14 1 0 0 0 1 0
................TTACGTGGCCAAAGGTCGAGGA..................................................................................................................................................................................................................... 22 0 7 0.14 1 1 0 0 0 0
....CGGCGGCCAGAGTTACGTGGC.................................................................................................................................................................................................................................. 21 1 7 0.14 1 1 0 0 0 0
.....................................................................................................................................................................................................................TCTGCTATGAGATCTGAATCGGCCA............. 25 0 15 0.13 2 0 0 0 2 0
..............................................................................................................................................................................................................................AGATCTGAATCGGCCAACGTT........ 21 0 8 0.13 1 1 0 0 0 0
...................CGTGGCCAAAGGTCGAGTAGTCC................................................................................................................................................................................................................. 23 3 8 0.13 1 1 0 0 0 0
....CAGCGGCCAGCGCTACGTGGC.................................................................................................................................................................................................................................. 21 2 8 0.13 1 0 0 1 0 0
...................................................................................................................................................................................TAATTTGTTTCTTGTTGCCTAGACCA.............................................. 26 0 8 0.13 1 0 0 0 1 0
................................................................................................................................................................................................................................ATCTGAATCGGCCAACGTTACA..... 22 0 8 0.13 1 1 0 0 0 0
..................................................................................................................................................................................TTAATTTGTTTCTTGTTGCC..................................................... 20 0 8 0.13 1 1 0 0 0 0
...................CGTGGCAAAAGGTCGAGGA..................................................................................................................................................................................................................... 19 1 8 0.13 1 1 0 0 0 0
....CAGCGGCCGGAGTTGCGTGGC.................................................................................................................................................................................................................................. 21 2 8 0.13 1 1 0 0 0 0
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTACATC... 23 0 8 0.13 1 0 0 0 1 0
....................GTGGCCAAAGGCCGAGGA..................................................................................................................................................................................................................... 18 1 8 0.13 1 1 0 0 0 0
......................................................................................................................................................................................................................CTGCTATGAGATCTGAATCGG................ 21 0 17 0.12 2 0 2 0 0 0
.......CGGCCAGAGTTACGTGGCCAAAGGTCGAG....................................................................................................................................................................................................................... 29 0 9 0.11 1 1 0 0 0 0
.........................................................................................................................................................................................................................CTATGAGATCTGAATCGGCCA............. 21 0 18 0.11 2 2 0 0 0 0
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAAC........... 28 0 10 0.10 1 0 0 0 1 0
...........CAGAGTTACGTGGCCAAGGG............................................................................................................................................................................................................................ 20 1 20 0.10 2 2 0 0 0 0
...............................................................CTGGAACTGCAGAACTCTGAT....................................................................................................................................................................... 21 0 20 0.10 2 0 2 0 0 0
...........CAGAGTTACGTGCCCAAAGG............................................................................................................................................................................................................................ 20 1 20 0.10 2 2 0 0 0 0
..........................................TTGCTGCGAATTTTCGAGCTC............................................................................................................................................................................................ 21 2 20 0.10 2 1 1 0 0 0
...............GTTACGTGGCCAGAGGTCGAG....................................................................................................................................................................................................................... 21 1 10 0.10 1 1 0 0 0 0
.........................................TTTGCTGCGAATTTTCGAGCTC............................................................................................................................................................................................ 22 2 20 0.10 2 0 2 0 0 0
........................CCAAAGGTCGAGGAGTGTTTC.............................................................................................................................................................................................................. 21 1 20 0.10 2 1 0 1 0 0
.............GAGTTACGTGGCCAAAGGCCG......................................................................................................................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAACG.......... 29 0 10 0.10 1 0 0 0 1 0
............AGAGTTACGTGGCCAAAGGCC.......................................................................................................................................................................................................................... 21 1 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTACA..... 21 0 10 0.10 1 1 0 0 0 0
...............................................................CTGGAACTGCAGAACTCTGA........................................................................................................................................................................ 20 0 20 0.10 2 0 1 1 0 0
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTAC...... 20 0 10 0.10 1 1 0 0 0 0
................TTGCGTGGCCAAAGGTCGAGG...................................................................................................................................................................................................................... 21 1 11 0.09 1 1 0 0 0 0
.............................................................................................................................................................................................................................GAGATCTAAATCAGCCAACGTTACATAA.. 28 3 11 0.09 1 0 0 0 0 1
..............................................TGCGAATTTTCGAGCTCCTGGA....................................................................................................................................................................................... 22 2 11 0.09 1 1 0 0 0 0
.............................................CTGCGAATTTTCGAGCTCCTGGAAC..................................................................................................................................................................................... 25 2 11 0.09 1 1 0 0 0 0
...............GTTACGTGGCCGGGGGTCGAG....................................................................................................................................................................................................................... 21 3 11 0.09 1 1 0 0 0 0
................................................................................................................................................................................GCTTAATTTGTTTCTTGTTG....................................................... 20 0 11 0.09 1 1 0 0 0 0
.............................................CTGCGAATTTTCCAGCTCCTG......................................................................................................................................................................................... 21 2 11 0.09 1 1 0 0 0 0
.............................................CTGCGAATTTTCGAGCTCCTGG........................................................................................................................................................................................ 22 2 11 0.09 1 1 0 0 0 0
..........................................................................................................................................................................................................................TATTAGATCTGAATCGGCCAACG.......... 23 1 12 0.08 1 0 0 0 0 1
............................AGGTCGAGGAGAGTATCCT............................................................................................................................................................................................................ 19 3 13 0.08 1 0 0 1 0 0
.............................................................................................GATCTTAAGACGAAAATC............................................................................................................................................ 18 2 14 0.07 1 0 0 0 1 0
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAA............ 27 0 15 0.07 1 0 1 0 0 0
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCC.............. 25 0 15 0.07 1 0 0 0 1 0
....................................................................................................................................................................................................................ATCTGCTATGAGATCTGAATCGGC............... 24 1 15 0.07 1 0 0 0 0 1
..................................................................................................................................AGTATCAAGCACACAAAATTGTTGCC............................................................................................... 26 0 16 0.06 1 0 0 0 1 0
..................................................................................................................................AGTATCAAGCACACAAAATTGTTGC................................................................................................ 25 0 16 0.06 1 0 0 0 1 0
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGC............... 21 0 16 0.06 1 0 1 0 0 0
...............GTTACGTGGCCAAAGGTCGAGT...................................................................................................................................................................................................................... 22 1 16 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCA............. 20 0 18 0.06 1 1 0 0 0 0
......................CGCCAAAGGCCGAGGAGGG.................................................................................................................................................................................................................. 19 3 18 0.06 1 1 0 0 0 0
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAA............ 21 0 18 0.06 1 1 0 0 0 0
....................................................................................................................................TATCAAGCACACAAAATTGTTGC................................................................................................ 23 0 20 0.05 1 0 0 0 1 0
.............GAGTTACGTGGCGAAAGGTCG......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
............GGAGTTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
............AGAGTTACGTGTCCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................................................CTGAATCGGCCAACGTTACA..... 20 0 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................GGAGCTGAGTCGGCCAACGTT........ 21 3 20 0.05 1 0 0 1 0 0
.............................................CTGCGAATTCTCGAGCTCCT.......................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0
............AGAGTTACGCGGCCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
.........................CAAAGGTCGAGGAGTGTTTCC............................................................................................................................................................................................................. 21 1 20 0.05 1 1 0 0 0 0
............AGAGTTAGGTGGCCAAAGGTCG......................................................................................................................................................................................................................... 22 1 20 0.05 1 1 0 0 0 0
..........TCAGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0
............AGAATTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................ 23 1 20 0.05 1 1 0 0 0 0
..........CCAGAGTTACGTGGCCAAAGC............................................................................................................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0
...........CAGAGTTACGTGGCCAAA.............................................................................................................................................................................................................................. 18 0 20 0.05 1 1 0 0 0 0
............AGAGTTACGTGGCCAAGGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
............AGACTTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
..........................AAAGGTCGAGGAGTGTTTC.............................................................................................................................................................................................................. 19 1 20 0.05 1 1 0 0 0 0
............AGAGTTACGTGACCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
.............GAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................ 18 0 20 0.05 1 1 0 0 0 0
.............GAGTTACGTGGCCAAAGGTCGT........................................................................................................................................................................................................................ 22 1 20 0.05 1 1 0 0 0 0
..............AGTTACGTGGCCCAAGGTCGA........................................................................................................................................................................................................................ 21 1 20 0.05 1 1 0 0 0 0
...........CAGAGTTACGCGGCCAAAGGT........................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
..............AGTTACGTGGCCAGGGGTCGA........................................................................................................................................................................................................................ 21 2 20 0.05 1 1 0 0 0 0
.............GAGTTACGTCGCCAAAGGTCG......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
.........GCCAGAGTTACGTGGCCAAAGGT........................................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.............................................CTGCGAATTTTCGAGCTC............................................................................................................................................................................................ 18 2 20 0.05 1 0 1 0 0 0
............AGAATTACGTGGCCAAAGGTC.......................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0

Anti-sense strand reads

GATTGTCGCCGGTCTCAATGCACCGGTTTCCAGCTCCTCACAAACGACGCTTAAAAGTTCGAAGACCTTGACGTCTTGAGACTAGAATTCTGCCTAGAATTCTTCTTTTATCATAGTTCACTCTCTTTTATCATAGTTCGTGTGTTTTAACAACGGAAGTATCATTCTGTGTTGGCCGAATTAAACAAAGAACAACGGATCTGGTCGTTGAAAAGACGATACTCTAGACTTAGCCGGTTGCAATGTAGTCT
***********************************************************************************************************(((......)))...(((..((((((((....)))))))))))............(((...((........))...)))..*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 V117
male body		 M045
female body
 V118
embryo
 V119
head
.............................CCAGCTCCTCACAAACGTCGC......................................................................................................................................................................................................... 21 1 3 8.67 26 17 7 1 0 1
..............................CAGCTCCTCACAAACGTCGC......................................................................................................................................................................................................... 20 1 3 2.00 6 5 1 0 0 0
......................CCGGTTTCCAGCTCCTCACAA................................................................................................................................................................................................................ 21 0 4 1.25 5 1 2 0 1 1
...........................................ACGGCGCTTAAAAGTTCGAAGACCT....................................................................................................................................................................................... 25 1 1 1.00 1 0 0 0 1 0
................................GCTCCTCACAAACGTCGCTTAA..................................................................................................................................................................................................... 22 1 3 1.00 3 0 3 0 0 0
...............................AGCTCCTCACAAACGTCGCTT....................................................................................................................................................................................................... 21 1 3 0.67 2 1 1 0 0 0
.............................CCAGCTCCTCACAAACGACGC......................................................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0
............................TCCAGCTCCTCACAAACGTCGC......................................................................................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
..............................CAGCTCCTCACAAACGTCGCT........................................................................................................................................................................................................ 21 1 3 0.33 1 0 1 0 0 0
.............................ACAGCTCCTCACAAACGTCGC......................................................................................................................................................................................................... 21 2 3 0.33 1 1 0 0 0 0
................................GCTCCTCACAAACGTCGCTTA...................................................................................................................................................................................................... 21 1 3 0.33 1 0 1 0 0 0
..............................CAGCTCCTCACAAACGTCGCTT....................................................................................................................................................................................................... 22 1 3 0.33 1 1 0 0 0 0
.............................GCAGCTCCTCACAAACGTCGC......................................................................................................................................................................................................... 21 2 3 0.33 1 0 0 0 0 1
.......................CGGTTTCCAGCTCCTCACAAA............................................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0 0
........................CGGTTCCAGCTCCTCACAAA............................................................................................................................................................................................................... 20 2 4 0.25 1 0 1 0 0 0
......................CCGGTTTCCAGCTCCTCACAAA............................................................................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0 0
..TTGTCGCCGGTCTCGATGC...................................................................................................................................................................................................................................... 19 1 9 0.22 2 2 0 0 0 0
..............................................................................................................................................TGTTTTAACAACGGAAGTATC........................................................................................ 21 0 20 0.20 4 0 4 0 0 0
....................................................................................................................................................................................................................AAGACGATACTCTAGACTTAG.................. 21 0 17 0.18 3 0 3 0 0 0
...................................CCTCACAAACGTCGCTTAAG.................................................................................................................................................................................................... 20 2 6 0.17 1 0 0 0 0 1
..................................TCCTCACAAACGTCGCTTAAG.................................................................................................................................................................................................... 21 2 6 0.17 1 0 1 0 0 0
.ATTGTCGCCGGTCTCAATGC...................................................................................................................................................................................................................................... 20 0 6 0.17 1 1 0 0 0 0
.ATTGTCGCCGGTCTCAATGCA..................................................................................................................................................................................................................................... 21 0 6 0.17 1 1 0 0 0 0
................................................................AGCTTGACATCTTGAGAC......................................................................................................................................................................... 18 2 20 0.15 3 0 0 3 0 0
.................................................................................................................................................................................................................................AGACTTAGCCGGTTGCAATGTAGT.. 24 0 8 0.13 1 0 0 0 1 0
...................................................................................................................................................................................ATTAAACAAAGAACAACGGAT................................................... 21 0 8 0.13 1 0 1 0 0 0
......................................................................................................................................................................CTGTGTTGGCCGAATTAAACAAAGAAC.......................................................... 27 0 9 0.11 1 0 0 1 0 0
..TTGTCGCCGGTCTCAATGTA..................................................................................................................................................................................................................................... 20 1 9 0.11 1 0 1 0 0 0
.............................................................................................................................................................................GGCCGAATTAAACAAAGAACA......................................................... 21 0 10 0.10 1 0 1 0 0 0
......................................................................................................................................................................CTGTGTTGGCCGAATTAAACA................................................................ 21 0 20 0.10 2 0 2 0 0 0
...........................................................................................................................................................................TTGGCCGAATTAAACAAAGAA........................................................... 21 0 10 0.10 1 0 1 0 0 0
.................................................................................................................................................................................................................................AGACTTAGCCGGTTGCAATGT..... 21 0 10 0.10 1 0 1 0 0 0
..............................................................................................................................................................................................................GTTTAAGAGGCGATACTCTA......................... 20 3 13 0.08 1 0 0 1 0 0
..............................................................AGAGCCTGACATCTTGAGA.......................................................................................................................................................................... 19 3 15 0.07 1 0 0 1 0 0
....................................................................................................................................................................................................................AAGACGATACTCTAGACTTAGC................. 22 0 17 0.06 1 0 1 0 0 0
.....................................................................................................................................................................................................................AGACGATACTCTAGACTTAGCT................ 22 1 17 0.06 1 0 0 1 0 0
....................................................................................................................................................................................................................AAGACGATCCTCTAGACTTAG.................. 21 1 18 0.06 1 0 0 0 0 1
.................................................................CCTTGACGTCTTTAGGCTA....................................................................................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................................TTAGCCGGTTGCAATGTAGTC. 21 0 20 0.05 1 0 1 0 0 0
.........CGGTCTCAATGCACCGGTT............................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
...............................................................TACCCTGACATCTTGAGAC......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
................................................................AGCCTGACATCTTGAGACT........................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0
.............CTCAATGCACCGGTTTCCAGC......................................................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
...............................................................GAGCCTGACATCTTGAGAC......................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0
.....................................................................................................................................................................TCTGTGTTGGCCGAATTAAACAAA.............................................................. 24 0 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004963:2531759-2532009 - dwi_3989 CTAACAGCGGCCAGAGTTACGTGGCCAAAGGTCGAGGAGTGTTTGCTGCGAATTTTCAAGCTTCTGGAACTGCAGAACTCTGATCTTAAGACGGATCTTAAGAAGAAAATAGTATCAAGTGAGAGAAAATAGTATCAAGCACACAAAATTGTTGCCTTCATAGTAAGACACAACCGGCTTAATTTGTTTCTTGTTGCCTAGACCAGCAACTTTTCTGCTATGAGATCTGAATCGGCCAACGTTACATCAGA
droVir3 scaffold_12970:8897518-8897563 + TTGGATT-------------------------------------------------------------------------------------------------------------------------------------------------------AATAGACAGACACAACCGGATCAACTCGGTTCTTGATGC------------------------------------------------------
droMoj3 scaffold_6500:19958766-19958796 + TAACCTT--------------------------------------------------------------------------------AAGACGGAATCTGAGAAGA----------------------------------------------------------------------------------------------------------------------------------AAATA----------
dp5 XL_group3a:77346-77400 - GAAAGCT----T----------------------------------------------------------------------AGCTGCAGACGAATATAAAGAAAAAAACAGAAGAATATGGGAGAA--------------------------------------------------------------------AA------------------------------------------------------
droPer2 scaffold_11:136689-136763 - GTGAACACAGCCGAAGGCGCATTGCCGGACCCACACGAAGGCTTGCT---------------------------------------------------------------GCTTTTTTTTTTGTGTTTGGACCGGC-----------------------------------------------------------AG------------------------------------------------------
droBip1 scf7180000395061:12838-12888 - ATATTAA----A--------------------ACA---------------------------------------------------------------TGAGGAAAAGATGATATTAATGAAGAGAAAATATTATC-----------------------------------------------------------AA------------------------------------------------------
droKik1 scf7180000302468:1074139-1074183 + CAGCGG----CCAAGGCTGCGGGACCAGTGGAGGAGAAGCGTCTGTT----------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------
droEle1 scf7180000490546:725485-725550 + GTTGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTCAAAATAGCAACTCTTTTGACTTTGGGTCTTATTTTGGCAAAGTTACAACAAA
droRho1 scf7180000778015:27640-27677 - CACCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTACAATGAAACCCGAGTCGGCCAACG----------
droBia1 scf7180000302377:562457-562505 + TAAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACGCTATTATTTGTTTCATGTTACCTACAGCAGC-----------------------------AAATT----------
droTak1 scf7180000415996:26572-26624 + AAATTAA----T-----------------------------------------------------------------------------------------------------ATTTGGTAAAAGAAAATGAAACCAATCAAGTAAAGTTATAGCT---------------------------------------TT------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CTAACAGCGGCCAGAGTTACGTGGCCAAAGGTCGAGGAGTGTTTGCTGCGAATTTTCAAGCTTCTGGAACTGCAGAACTCTGATCTTAAGACGGATCTTAAGAAGAAAATAGTATCAAGTGAGAGAAAATAGTATCAAGCACACAAAATTGTTGCCTTCATAGTAAGACACAACCGGCTTAATTTGTTTCTTGTTGCCTAGACCAGCAACTTTTCTGCTATGAGATCTGAATCGGCCAACGTTACATCAGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................AAAGGTCGAGGAGTGTTTGCT............................................................................................................................................................................................................21242.50851506505
...................CGTGGCCAAAGGTCGAGGAG....................................................................................................................................................................................................................20422.5090408501
...............................TCGAGGAGTGTTTGCTGCGAA.......................................................................................................................................................................................................21222.00441003400
...............................................................CTGGAACTGCAGAACTCTGATC......................................................................................................................................................................22120.0020190001
.........................CAAAGGTCGAGGAGTGTTTGC.............................................................................................................................................................................................................21415.5062905201
...................CGTGGCCAAAGGTCGAGGAGTG..................................................................................................................................................................................................................22413.7555005401
....................GTGGCCAAAGGTCGAGGAGTG..................................................................................................................................................................................................................21411.5046204301
..............................GTCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................21210.5021201702
............AGAGTTACGTGGCCAAAGGTC..........................................................................................................................................................................................................................21209.8519700187010
...ACAGCGGCCAGAGTTACGTGG...................................................................................................................................................................................................................................2168.8353005102
..................ACGTGGCCAAAGGTCGAGGAG....................................................................................................................................................................................................................2148.7535103400
...................CGTGGCCAAAGGTCGAGGAGT...................................................................................................................................................................................................................2148.7535103400
..........................AAAGGTCGAGGAGTGTTTGCTC...........................................................................................................................................................................................................2228.0016601000
........................CCAAAGGTCGAGGAGTGTTTG..............................................................................................................................................................................................................2147.7531003100
..........................AAAGGTCGAGGAGTGTTTGC.............................................................................................................................................................................................................2047.2529302501
....CAGCGGCCAGAGTTACGTGGC..................................................................................................................................................................................................................................2166.0036003105
..........................AAAGGTCGAGGAGTGTTTGCTT...........................................................................................................................................................................................................2225.501110901
.....................TGGCCAAAGGTCGAGGAGTG..................................................................................................................................................................................................................2054.6023002201
.............GAGTTACGTGGCCAAAGGTCG.........................................................................................................................................................................................................................21204.5591008902
...................CGTGGCCAAAGGTCGAGGA.....................................................................................................................................................................................................................1984.3835003500
..........................AAAGGTCGAGGAGTGTTTGCTG...........................................................................................................................................................................................................2224.00800800
......................................................................TGCAGAACTCTGATCTTAAGACGGATC..........................................................................................................................................................2714.00440000
.....................TGGCCAAAGGTCGAGGAGTGT.................................................................................................................................................................................................................2143.5014001400
..............AGTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................21203.1563006300
.....................................AGTGTTTGCTGCGAATTTTCG.................................................................................................................................................................................................2113.00300300
...............................TCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................2023.00600600
..................ACGTGGCCAAAGGTCGAGGA.....................................................................................................................................................................................................................2082.8823102200
.........................CAAAGGTCGAGGAGTGTTTG..............................................................................................................................................................................................................2042.7511101000
................................CGAGGAGTGTTTGCTGCGAA.......................................................................................................................................................................................................2022.50510400
...............................................................CTGGAACTGCAGAACTCTGATCC.....................................................................................................................................................................2342.501090001
.................................GAGGAGTGTTTGCTGCGAATT.....................................................................................................................................................................................................2122.00400400
..................................AGGAGTGTTTGCTGCGAATTT....................................................................................................................................................................................................2122.00400400
................................CGAGGAGTGTTTGCTGCGAAT......................................................................................................................................................................................................2122.00410300
...............................TCGAGGAGTGTTTGCTGCGAAA......................................................................................................................................................................................................2222.00430100
....................................GAGTGTTTGCTGCGAATTTTC..................................................................................................................................................................................................2112.00200200
...........CAGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................20201.7535003401
.................TACGTGGCCAAAGGTCGAGGAG....................................................................................................................................................................................................................2241.75710600
.................TACGTGGCCAAAGGTCGAGGA.....................................................................................................................................................................................................................2181.6313001300
...............................TCGAGGAGTGTTTGCTGCG.........................................................................................................................................................................................................1921.50300300
....................GTGGCCAAAGGTCGAGGAGT...................................................................................................................................................................................................................2041.50600600
.................................GAGGAGTGTTTGCTGCGAA.......................................................................................................................................................................................................1921.50300300
..................................AGGAGTGTTTGCTGCGAATT.....................................................................................................................................................................................................2021.50300300
................................CGAGGAGTGTTTGCTGCGAATT.....................................................................................................................................................................................................2221.50300300
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACG..........26111.3615012120
CTAACAGCGGCCAGAGTTACG......................................................................................................................................................................................................................................2161.33800701
..................ACGTGGCCAAAGGTCGAGGAGT...................................................................................................................................................................................................................2241.00400400
..................................AGGAGTGTTTGCTGCGAATTTT...................................................................................................................................................................................................2211.00100100
...................CGTGGCCAAAGGTCGAGGAGTT..................................................................................................................................................................................................................2241.00400400
...................CGTGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................2441.00400301
...........................AAGGTCGAGGAGTGTTTGCTG...........................................................................................................................................................................................................2121.00200200
.TAACAGCGGCCAGAGTTACG......................................................................................................................................................................................................................................2061.00600402
..........................AAAGGTCGAGGAGTGTTTGCC............................................................................................................................................................................................................2141.00430100
..........................................................................GAACTCTGATCTTAAGACGGATCT.........................................................................................................................................................2411.00100100
..........................AAAGGTCGAGGAGTGTTTG..............................................................................................................................................................................................................1941.00400400
............AGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................19200.9519001702
...............GTTACGTGGCCAAAGGTCGAG.......................................................................................................................................................................................................................21100.90900900
................TTACGTGGCCAAAGGTCGAGG......................................................................................................................................................................................................................2170.86600600
............AGAGTTACGTGGCCAAAGGTCG.........................................................................................................................................................................................................................22200.8517001700
...................CGTGGCCAAAGGTCGAGGAGTC..................................................................................................................................................................................................................2240.75300201
............AGAGTTACGTGGCCAAAGGT...........................................................................................................................................................................................................................20200.7515001500
.TAACAGCGGCCAGAGTTACGT.....................................................................................................................................................................................................................................2160.67400400
..........CCAGAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................21200.6513001300
..............AGTTACGTGGCCAAAGGTCG.........................................................................................................................................................................................................................20200.6012001200
...................CGTGGCCAAAGGTCGAGGAGTTC.................................................................................................................................................................................................................2350.60300300
.....................................................................................................................................................................................................................TCTGCTATGAGATCTGAATCGGCCAACG..........28100.60606000
...............................TCGAGGAGTGTTTGCTGCGAG.......................................................................................................................................................................................................2120.50110000
....CAGCGGCCAGAGTTACGTGG...................................................................................................................................................................................................................................2060.50300300
.........................CAAAGGTCGAGGAGTGTTTGCC............................................................................................................................................................................................................2240.50210100
..................ACGTGGCCAAAGGTCGAGG......................................................................................................................................................................................................................1980.50400202
.......................GCCAAAGGTCGAGGAGTGTTT...............................................................................................................................................................................................................2140.50200200
........................CCAAAGGTCGAGGAGTGTTTGCTGCG.........................................................................................................................................................................................................2620.50100100
..........................AAAGGTCGAGGAGTGTTTGCTGCGA........................................................................................................................................................................................................2520.50100100
...................CGTGGCCAAAGGTCGAGGAGTGT.................................................................................................................................................................................................................2340.50200200
...............................TCGAGGAGTGTTTGCTGCGAAT......................................................................................................................................................................................................2220.50110000
.....................TGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................2240.50210100
....................GTGGCCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................2340.50200200
....................GTGGCCAAAGGTCGAGGAGTGT.................................................................................................................................................................................................................2240.50200200
................TTACGTGGCCAAAGGTCGAGGAG....................................................................................................................................................................................................................2340.50200200
..............................GTCGAGGAGTGTTTGCTGCGAA.......................................................................................................................................................................................................2220.50100100
..........CCAGAGTTACGTGGCCAAAG.............................................................................................................................................................................................................................20200.501000901
...........CAGAGTTACGTGGCCAAAGGT...........................................................................................................................................................................................................................21200.45900801
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAACG..........23120.42504010
...............GTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................20200.40800800
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAACGTTAC......2750.40201100
CTAACAGCGGCCAGAGTTAC.......................................................................................................................................................................................................................................2060.33200200
..AACAGCGGCCAGAGTTACGTG....................................................................................................................................................................................................................................2160.33200200
...ACAGCGGCCAGAGTTACGTGGT..................................................................................................................................................................................................................................2260.33200200
............AGAGTTACGTGGCCAAAGGTCC.........................................................................................................................................................................................................................22200.30600600
...............GTTACGTGGCCAAAGGTCGAGG......................................................................................................................................................................................................................2270.29200200
...............................................................................................................................................................................................................................GATCTGAATCGGCCAACGTTA.......2180.25200200
........................CCAAAGGTCGAGGAGTGTTTGC.............................................................................................................................................................................................................2240.25100100
...................CGTGGCCAAAGGTCGAGGAGTA..................................................................................................................................................................................................................2240.25100100
........................CCAAAGGTCGAGGAGTGTTTGTC............................................................................................................................................................................................................2340.25100100
...................CGTGGCCAAAGGTCGAGGAGA...................................................................................................................................................................................................................2140.25100100
..................ACGTGGCCAAAGGTCGAGGAGTG..................................................................................................................................................................................................................2340.25100100
.....................TGGCCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................2240.25100100
......................GGCCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................2140.25100100
........................CCAAAGGTCGAGGAGTGTTT...............................................................................................................................................................................................................2040.25110000
....................GTGGCCAAAGGTCGAGGAGTA..................................................................................................................................................................................................................2140.25100100
........................CCAAAGGTCGAGGAGTGTT................................................................................................................................................................................................................1940.25110000
....................GTGGCCAAAGGTCGAGGAG....................................................................................................................................................................................................................1940.25100100
....................GTGGCCAAAGGTCGAGGAGTC..................................................................................................................................................................................................................2140.25100100
.................TACGTGGCCAAAGGTCGAGG......................................................................................................................................................................................................................2080.25200200
........................CCAAAGGTCGAGGAGTGTC................................................................................................................................................................................................................1940.25100100
........................CCAAAGGTCGAGGAGTGTTTT..............................................................................................................................................................................................................2140.25110000
............AGAGTTACGTGGCCAAAGGTCT.........................................................................................................................................................................................................................22200.25500500
...................................................................AACTGCAGAACTCTGATCC.....................................................................................................................................................................1940.25110000
...................CGTGGCCAAAGGTCGAGGAGTGTTC...............................................................................................................................................................................................................2540.25100100
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACGTT........2840.25100010
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCA.............26150.20303000
......................GGCCAAAGGTCGAGGAGTG..................................................................................................................................................................................................................1950.20100100
........................................................................................................................GAGAGAAAATAGTATCAAGCACAC...........................................................................................................2450.20110000
...........CAGAGTTACGTGGCCAAAGGTC..........................................................................................................................................................................................................................22200.20400400
................TTACGTGGCCAAAGGTCGAG.......................................................................................................................................................................................................................20100.20200101
........................................................................................................................GAGAGAAAATAGTATCAAGCA..............................................................................................................2150.20100100
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGCCAACGT.........27110.18211000
........................................................................................................................................................................................................................GCTATGAGATCTGAATCGGCCAACG..........25110.18202000
.............................................................................................................................................................................................................................GAGATCTGAATCGGCCAACGTTACA.....2560.17101000
.TAACAGCGGCCAGAGTTACGTGG...................................................................................................................................................................................................................................2360.17100100
.TAACAGCGGCCAGAGTTACGTGGC..................................................................................................................................................................................................................................2460.17100100
.TAACAGCGGCCAGAGTTACGTG....................................................................................................................................................................................................................................2260.17100100
...ACAGCGGCCAGAGTTACGTGGTT.................................................................................................................................................................................................................................2360.17100100
..........CCAGAGTTACGTGGCCAAAGGT...........................................................................................................................................................................................................................22200.15300300
..........CCAGAGTTACGTGGCCAAA..............................................................................................................................................................................................................................19200.15300300
............AGAGTTACGTGGCCAAAGGTCGA........................................................................................................................................................................................................................23200.15300300
..........CCAGAGTTACGTGGCCAAAGGTC..........................................................................................................................................................................................................................23200.15300300
................TTACGTGGCCAAAGGTCGAGGT.....................................................................................................................................................................................................................2270.14100100
............................................................................................................................................................................................TCTTGTTGCCTAGACCAGC............................................1970.14101000
................TTACGTGGCCAAAGGTCGAGGA.....................................................................................................................................................................................................................2270.14100100
.....................................................................................................................................................................................................................TCTGCTATGAGATCTGAATCGGCCA.............25150.13202000
..............................................................................................................................................................................................................................AGATCTGAATCGGCCAACGTT........2180.13100100
...................................................................................................................................................................................TAATTTGTTTCTTGTTGCCTAGACCA..............................................2680.13101000
................................................................................................................................................................................................................................ATCTGAATCGGCCAACGTTACA.....2280.13100100
..................................................................................................................................................................................TTAATTTGTTTCTTGTTGCC.....................................................2080.13100100
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTACATC...2380.13101000
......................................................................................................................................................................................................................CTGCTATGAGATCTGAATCGG................21170.12220000
.......CGGCCAGAGTTACGTGGCCAAAGGTCGAG.......................................................................................................................................................................................................................2990.11100100
.........................................................................................................................................................................................................................CTATGAGATCTGAATCGGCCA.............21180.11200200
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAAC...........28100.10101000
...............................................................CTGGAACTGCAGAACTCTGAT.......................................................................................................................................................................21200.10220000
........................CCAAAGGTCGAGGAGTGTTTC..............................................................................................................................................................................................................21200.10200101
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAACG..........29100.10101000
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTACA.....21100.10100100
...............................................................CTGGAACTGCAGAACTCTGA........................................................................................................................................................................20200.10210001
.................................................................................................................................................................................................................................TCTGAATCGGCCAACGTTAC......20100.10100100
................................................................................................................................................................................GCTTAATTTGTTTCTTGTTG.......................................................20110.09100100
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCCAA............27150.07110000
....................................................................................................................................................................................................................TTCTGCTATGAGATCTGAATCGGCC..............25150.07101000
..................................................................................................................................AGTATCAAGCACACAAAATTGTTGCC...............................................................................................26160.06101000
..................................................................................................................................AGTATCAAGCACACAAAATTGTTGC................................................................................................25160.06101000
.......................................................................................................................................................................................................................TGCTATGAGATCTGAATCGGC...............21160.06110000
...............GTTACGTGGCCAAAGGTCGAGT......................................................................................................................................................................................................................22160.06100100
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCA.............20180.06100100
..........................................................................................................................................................................................................................TATGAGATCTGAATCGGCCAA............21180.06100100
....................................................................................................................................TATCAAGCACACAAAATTGTTGC................................................................................................23200.05101000
..................................................................................................................................................................................................................................CTGAATCGGCCAACGTTACA.....20200.05100100
..........CCAGAGTTACGTGGCCAAAGC............................................................................................................................................................................................................................21200.05100100
...........CAGAGTTACGTGGCCAAA..............................................................................................................................................................................................................................18200.05100100
..........................AAAGGTCGAGGAGTGTTTC..............................................................................................................................................................................................................19200.05100100
.............GAGTTACGTGGCCAAAGG............................................................................................................................................................................................................................18200.05100100
.............GAGTTACGTGGCCAAAGGTCGT........................................................................................................................................................................................................................22200.05100100
.........GCCAGAGTTACGTGGCCAAAGGT...........................................................................................................................................................................................................................23200.05100100
droVir3
TTGGATT-------------------------------------------------------------------------------------------------------------------------------------------------------AATAGACAGACACAACCGGATCAACTCGGTTCTTGATGC------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
TAACCTT--------------------------------------------------------------------------------AAGACGGAATCTGAGAAGA----------------------------------------------------------------------------------------------------------------------------------AAATA----------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
dp5
GAAAGCT----T----------------------------------------------------------------------AGCTGCAGACGAATATAAAGAAAAAAACAGAAGAATATGGGAGAA--------------------------------------------------------------------AA------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
GTGAACACAGCCGAAGGCGCATTGCCGGACCCACACGAAGGCTTGCT---------------------------------------------------------------GCTTTTTTTTTTGTGTTTGGACCGGC-----------------------------------------------------------AG------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droBip1
ATATTAA----A--------------------ACA---------------------------------------------------------------TGAGGAAAAGATGATATTAATGAAGAGAAAATATTATC-----------------------------------------------------------AA------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CAGCGG----CCAAGGCTGCGGGACCAGTGGAGGAGAAGCGTCTGTT----------------------------------------------------------------------------------------------------------------------------------------------------GC------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTTGCTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGTTCAAAATAGCAACTCTTTTGACTTTGGGTCTTATTTTGGCAAAGTTACAACAAASizeHit CountTotal NormTotal
No Reads
droRho1
CACCAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTGGCTACAATGAAACCCGAGTCGGCCAACG----------SizeHit CountTotal NormTotal
No Reads
droBia1
TAAATCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACGCTATTATTTGTTTCATGTTACCTACAGCAGC-----------------------------AAATT----------SizeHit CountTotal NormTotal
No Reads
droTak1
AAATTAA----T-----------------------------------------------------------------------------------------------------ATTTGGTAAAAGAAAATGAAACCAATCAAGTAAAGTTATAGCT---------------------------------------TT------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 09:07 AM