ID:

dwi_3986

 Coordinate:

scf2_1100000004963:2418232-2418382 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-22.4 -22.3 -22.1

Flybase annnotation

exon [dwil_GLEANR_1581:1]; CDS [Dwil\GK15570-cds]; intron [Dwil\GK15570-in]

No Repeatable elements found

mature
  1. scf2_1100000004902:10762544-10762564 -
  2. dwi_3986  scf2_1100000004963:2418337-2418357 -
star
  1. scf2_1100000004902:9868020-9868041 +
  2. scf2_1100000004963:1653080-1653101 +
  3. dwi_3986  scf2_1100000004963:2418248-2418269 -

Sense Strand Reads

--------##########################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACTCACCATGGTTGAGCTAATTCAATACAGTTCGCCGCAAACAGTTACGGTGAGAGGGCAAAAAGTTACGGCGAGAGTGCAAAAAGTTACGGCGAGAGGGCAAAAAGTTACAGCGAATAATACATTTCAGGCGAATTCGGCCATGTGGTTGTTGTTGCATTTGTGAGTCGAGCGAATTGGCGGCGAATGTTTTTAGCTTCAAATATTCAAATATTTTCCGTTATTTTTTCCTCATCTTCACTATTAAATT
***************************************************************************...(((.....(((.((((......(((((..((.(((((((....(((((....(((.......)))))))).))))))).)).)))))..)))))))......)))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 V117
male body
...........................................................................GAGTGCAAAAAGTTACGGCGA........................................................................................................................................................... 21 0 2 0.50 1 1 0
...................................................................................................................................................................GTGAGTCGAGCGAATTGGCGGC.................................................................. 22 0 3 0.33 1 0 1
.........................................................................................................................................................................CGAAAGAAGTGGCGGCGAA............................................................... 19 3 20 0.05 1 0 1

Anti-sense strand reads

ATGAGTGGTACCAACTCGATTAAGTTATGTCAAGCGGCGTTTGTCAATGCCACTCTCCCGTTTTTCAATGCCGCTCTCACGTTTTTCAATGCCGCTCTCCCGTTTTTCAATGTCGCTTATTATGTAAAGTCCGCTTAAGCCGGTACACCAACAACAACGTAAACACTCAGCTCGCTTAACCGCCGCTTACAAAAATCGAAGTTTATAAGTTTATAAAAGGCAATAAAAAAGGAGTAGAAGTGATAATTTAA
******************************************************************...(((.....(((.((((......(((((..((.(((((((....(((((....(((.......)))))))).))))))).)).)))))..)))))))......)))..*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V117
male body		 M045
female body
..........................................................CGTTTTTCTATGCGGCACTC............................................................................................................................................................................. 20 3 12 0.08 1 1 0
...............................................................................CGTTTTTCTATGCGGCACTC........................................................................................................................................................ 20 3 12 0.08 1 1 0
.............ACTCGATTAAGTTAGGGTAA.......................................................................................................................................................................................................................... 20 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004963:2418182-2418432 - dwi_3986 TACTCACCATGGTTGAGCTAATTCAATACAGTTCGCCGCAAACAGTTACGGTGAGAGGGCAAAAAGTTACGGCGAGAGTGCAAAAAGTTACGGCGAGAGGGCAAAAAGTTACAGCGAATAATACATTTCAGGCGAATTCGGCCATGTGGTTGTTGTTGCATTTGTGAGTCGAGCGAATTGGCGGCGAATGTTTTTAGCTTCAAATATTCAAATATTTTCCGTTATTTTTTCCTCATCTTCACTATTAAATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TACTCACCATGGTTGAGCTAATTCAATACAGTTCGCCGCAAACAGTTACGGTGAGAGGGCAAAAAGTTACGGCGAGAGTGCAAAAAGTTACGGCGAGAGGGCAAAAAGTTACAGCGAATAATACATTTCAGGCGAATTCGGCCATGTGGTTGTTGTTGCATTTGTGAGTCGAGCGAATTGGCGGCGAATGTTTTTAGCTTCAAATATTCAAATATTTTCCGTTATTTTTTCCTCATCTTCACTATTAAATTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................GAGTGCAAAAAGTTACGGCGA...........................................................................................................................................................2120.50100010
...................................................................................................................................................................GTGAGTCGAGCGAATTGGCGGC..................................................................2230.33100100

Generated: 05/18/2015 at 09:10 AM