ID:

dwi_3833

 Coordinate:

scf2_1100000004958:2142654-2142804 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.3 -22.1 -21.9 -21.7

Flybase annnotation

CDS [Dwil\GK10465-cds]; exon [dwil_GLEANR_10559:1]; intron [Dwil\GK10465-in]

Repeatable elements

NameClassFamilyStrand
Gypsy-12_DWil-I-intLTRGypsy+
mature
  1. scf2_1100000001115:3106-3130 -
  2. scf2_1100000007884:408-432 -
  3. scf2_1100000001403:2062-2086 -
  4. scf2_1100000002875:7718-7742 -
  5. scf2_1100000001610:9062-9086 -
  6. scf2_1100000003352:1551-1575 -
  7. scf2_1100000008490:1178-1202 -
  8. scf2_1100000008717:1380-1404 -
  9. scf2_1100000003849:1043-1067 -
  10. scf2_1100000002268:1819-1843 -
  11. scf2_1100000002297:1582-1606 -
  12. scf2_1100000009175:1140-1164 -
  13. scf2_1100000012079:604-628 -
  14. scf2_1100000004529:21536-21560 -
  15. scf2_1100000004723:8614-8638 -
  16. scf2_1100000004888:549576-549600 -
  17. scf2_1100000004943:2481109-2481133 -
  18. scf2_1100000004936:502117-502141 -
  19. scf2_1100000004961:2717003-2717027 -
  20. scf2_1100000004968:3179237-3179261 -
  21. scf2_1100000013153:212-236 +
  22. scf2_1100000013645:190-214 +
  23. scf2_1100000011622:188-212 +
  24. scf2_1100000004381:3448-3472 +
  25. scf2_1100000004419:169-193 +
  26. scf2_1100000004620:149778-149802 +
  27. scf2_1100000009672:338-362 +
  28. scf2_1100000012283:1330-1354 +
  29. scf2_1100000004888:101428-101452 +
  30. scf2_1100000004943:229742-229766 +
  31. scf2_1100000004943:7227371-7227395 +
  32. scf2_1100000004954:2151644-2151668 +
  33. dwi_3833  scf2_1100000004958:2142688-2142712 +
  34. scf2_1100000004961:510247-510271 +
  35. scf2_1100000004961:3230685-3230709 +
  36. scf2_1100000004967:3153969-3153993 +
  37. scf2_1100000004968:1041868-1041892 +
  38. scf2_1100000004968:1283985-1284009 +
  39. scf2_1100000007515:234-258 +
  40. scf2_1100000000657:1308-1332 +
star
  1. scf2_1100000010775:118-138 +
  2. scf2_1100000013645:282-302 +
  3. scf2_1100000008566:439-459 +
  4. scf2_1100000003969:330-350 +
  5. scf2_1100000006602:216-236 +
  6. scf2_1100000004419:261-281 +
  7. scf2_1100000004620:149870-149890 +
  8. scf2_1100000012283:1422-1442 +
  9. scf2_1100000004943:229834-229854 +
  10. scf2_1100000004943:7227463-7227483 +
  11. scf2_1100000004952:273479-273499 +
  12. scf2_1100000004954:2151736-2151756 +
  13. scf2_1100000004956:361-381 +
  14. dwi_3833  scf2_1100000004958:2142780-2142800 +
  15. scf2_1100000004961:510339-510359 +
  16. scf2_1100000004967:3154061-3154081 +
  17. scf2_1100000004968:1041960-1041980 +
  18. scf2_1100000007743:215-235 +
  19. scf2_1100000000123:847-867 +
  20. scf2_1100000000657:1400-1420 +
  21. scf2_1100000009672:430-450 +
  22. scf2_1100000004961:3230777-3230797 +
  23. scf2_1100000004968:1284077-1284097 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACTAACCGAACGGTTGGGTGAGAGAACGGAGGAGGTCGATGCCTCAGAGGTAGACGTCCGGAGATTAGCCTTCCGTAACATTGTTAAGTCCCAAGAATATAATTCGGAATATTATTCGAAGCATCACCTCCCTGCCGTTAGTTTTGAGGAGGGGGATTTCGTAGTTATTAAGAATGTGGATACTTCGGCAGGCACGAACAAAAAGCTTATCAGGCGGTATCGTGGTCCGTATGTGGTTCATAAAAAACTT
************************************************************************************.....................((.........((((((.(((((((((((.((...........))))))))....................))).)).))))))......))****************************************************** 		Read size # Mismatch Hit Count Total Norm Total V118
embryo
 M045
female body
 V117
male body		 V119
head
 M020
head
....................................................................................TTAAGTCCCAAGAATATAATTCGGA.............................................................................................................................................. 25 0 20 0.35 7 7 0 0 0 0
................................................................................................................................................................................GTGGATACTTCGGCAGGCACG...................................................... 21 0 20 0.30 6 5 0 1 0 0
..............................................................................................................TATTATTCGAAGCATCACCTCCCTG.................................................................................................................... 25 0 20 0.25 5 0 5 0 0 0
.....................................................................................TAAGTCCCAAGAATATAATTCGGA.............................................................................................................................................. 24 0 20 0.20 4 0 4 0 0 0
................................................................................................................................................................................................................TATCAGGCGGTATCGTGGTCCGT.................... 23 0 20 0.20 4 4 0 0 0 0
......................................................................................................................................................................TATTAAGAATGTGGATACTTCGGC............................................................. 24 0 20 0.20 4 4 0 0 0 0
.................................................................................................................TATTCGAAGCATCACCTCCCTGCCGT................................................................................................................ 26 0 20 0.15 3 0 3 0 0 0
.................................................................................................................................TCCCTGCCGTTAGTTTTGAGG..................................................................................................... 21 0 20 0.15 3 1 1 1 0 0
..................................................................................................................ATTCGAAGCATCACCTCCCTGC................................................................................................................... 22 0 20 0.15 3 0 3 0 0 0
................................................................................................................................................................................................GCACGAACAAAAAGCTTATCAGGCGG................................. 26 0 20 0.15 3 1 2 0 0 0
....................................................................................................................TCGAAGCATCACCTCCCTGCCGTTAGTTT.......................................................................................................... 29 0 20 0.15 3 0 3 0 0 0
..................................................................................................................ATTCGAAGCATCACCTCCCTGCCGT................................................................................................................ 25 0 20 0.10 2 0 2 0 0 0
............................................................................................CAAGAATATAATTCGGAATATTATTC..................................................................................................................................... 26 0 20 0.10 2 0 2 0 0 0
..................................................................................................................................................................................................................TCAGGCGGTATCGTGGTCCGTATG................. 24 0 20 0.10 2 0 2 0 0 0
.......................................ATGCCTCAGAGGTAGACGTCC............................................................................................................................................................................................... 21 0 20 0.10 2 0 0 1 1 0
......................................................................................................................................................................TATTAAGAATGTGGATACTTCGGCA............................................................ 25 0 20 0.10 2 2 0 0 0 0
............................................................................................................................................................................................................................TCGTGGTCCGTATGTGGTTCA.......... 21 0 20 0.10 2 2 0 0 0 0
.............................................CAGAGGTAGACGTCCGGAGATTAGCCT................................................................................................................................................................................... 27 0 20 0.10 2 0 2 0 0 0
........................................................................................................................................CGTTAGTTTTGAGGAGGGGGA.............................................................................................. 21 0 20 0.10 2 0 0 0 2 0
................................................................................................................................................................................................................TATCAGGCGGTATCGTGGTCC...................... 21 0 20 0.10 2 0 2 0 0 0
...............................................................................................................................................................................................................TTATCAGGCGGTATCGTGGTCCG..................... 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................CGAAGCATCACCTCCCTGCCGTTAGTTT.......................................................................................................... 28 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................GATTTCGTAGTTATTAAGAA............................................................................ 20 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................AATGTGGATACTTCGGCAGGCACGA..................................................... 25 0 20 0.05 1 1 0 0 0 0
.......................................................................TTCCGTAACATTGTTAAGTCCCAAGA.......................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
....................GAGAGAACGGAGGAGGTCGATGC................................................................................................................................................................................................................ 23 0 20 0.05 1 0 0 0 0 1
............GGTTGGGTGAGAGAACGGAG........................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................................................................AAGCTTATCAGGCGGTATCGT........................... 21 0 20 0.05 1 1 0 0 0 0
.ACTAACCGAACGGTTGGGTG...................................................................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0
................................................................ATTAGCCTTCCGTAACATTG....................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0
.....................................CGATGCCTCAGAGGTAGACGTCC............................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................CGAAGCATCACCTCCCTGCC.................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0
.......................................ATGCCTCAGAGGTAGACGTCCG.............................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0 0
........................................TGCCTCAGAGGTAGACGTCCG.............................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1 0
........................................................................TCCGTAACATTGTTAAGTCCCAAGA.......................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................TTCGAAGCATCACCTCCCTGCCGTTAG............................................................................................................. 27 0 20 0.05 1 0 1 0 0 0
.................GGTGAGAGAACGGAGGAGGTCT.................................................................................................................................................................................................................... 22 1 20 0.05 1 0 1 0 0 0
................................................................ATTAGCCTTCCGTAACATTGTT..................................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
.........................................................................................................................................................................TAAGAATGAGGCTACTTCGGCAGA.......................................................... 24 3 20 0.05 1 1 0 0 0 0
..........................................................................................................................................TTAGTTTTGAGGAGGGGGA.............................................................................................. 19 0 20 0.05 1 0 0 0 1 0
..........................................................................CGTAACATTGTTAAGTCCCAAG........................................................................................................................................................... 22 0 20 0.05 1 0 1 0 0 0
....AACCGAACGGTTGGGTGAG.................................................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................................................ATCAGGCGGTATCGTGGTCC...................... 20 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................TAGTTTTGAGGAGGGGGATTTT.......................................................................................... 22 1 20 0.05 1 1 0 0 0 0
..............................................................AGATTAGCCTTCCGTAAC........................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0
.........................................................................................................................................................................................................................GTATCGTGGTCCGTATGTGGT............. 21 0 20 0.05 1 1 0 0 0 0
.......................................ATGCCTCAGAGGTAGACGTCCGGAGAT......................................................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................................CGTAGTTATTAAGAATGTGGA...................................................................... 21 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TGGATACTTCGGCAGGCACGA..................................................... 21 0 20 0.05 1 1 0 0 0 0
........................................................................................................................................................................................................................GGTATCGTGGTCCGTATGTGGTTC........... 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................................................ATCGTGGTCCGTATGTGGT............. 19 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................AATGTGGATACTTCGGCAGGCAC....................................................... 23 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................TGGATACTTCGGCAGGCACGAAC................................................... 23 0 20 0.05 1 0 1 0 0 0
...TAACCGAACGGTTGGGTGAGAGAACGT............................................................................................................................................................................................................................. 27 1 20 0.05 1 1 0 0 0 0
............................................................................................................................TCACCTCCCTGCCGTTAGTTTTGAGG..................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
.................................................GGTAGACGGCCGGGGATG........................................................................................................................................................................................ 18 3 20 0.05 1 0 1 0 0 0
...................................................................................................................TTCGAAGCATCACCTCCCTGCCGTTAGTT........................................................................................................... 29 0 20 0.05 1 0 1 0 0 0
...............................................................................................................................................................................TGTGGATACTTCGGCAGGCAC....................................................... 21 0 20 0.05 1 1 0 0 0 0
...................................GTCGATGCCTCAGAGGTAGACGT................................................................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................................................................AATGTGGATACTTCGGCAGGC......................................................... 21 0 20 0.05 1 0 0 1 0 0
................GGGTGAGAGAACGGAGGAGGTCG.................................................................................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................CGAAGCATCACCTCCCTG.................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................GTAGTTATTAAGAATGTGGA...................................................................... 20 0 20 0.05 1 0 1 0 0 0
..................................................................................................................................................................................................ACGAACAAAAAGCTTATCAGGCGG................................. 24 0 20 0.05 1 1 0 0 0 0
............................................................................................................................................AGTTTTGAGGAGGGGGATTTCG......................................................................................... 22 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................TAGTTTTGAGGAGGGGGATTTCGA........................................................................................ 24 1 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................AGGCGGTATCGTGGTCCGT.................... 19 0 20 0.05 1 0 0 0 1 0
................................................................................ATTGTTAAGTCCCAAGAAT........................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0
..................................................................TAGCCTTCCGTAACATTGTTAAGTC................................................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0
.......................................................................................................................................................................................................................CGGTATCGTGGTCCGTATGTGGTT............ 24 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................ATCGTGGTCCGTATGTGGTTCA.......... 22 0 20 0.05 1 1 0 0 0 0
.....................................................................................TAAGACCCAAGAATATAATTCGGA.............................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0
......................................................................................................................................................................TATTAAGAATGAGGATACTTCGGCA............................................................ 25 1 20 0.05 1 1 0 0 0 0
......................................................................CTTCCGTAACATTGTTAAGTC................................................................................................................................................................ 21 0 20 0.05 1 1 0 0 0 0
...................................................TAGACGTCCGGAGATTAGCCTTCCG............................................................................................................................................................................... 25 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................CGAAGCATCACCTCCCTGCCGT................................................................................................................ 22 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................................................TACTTCGGCAGGCACGAACAAAAAGC............................................ 26 0 20 0.05 1 0 1 0 0 0
...................TGAGAGAACGGAGGAGGTCGATGC................................................................................................................................................................................................................ 24 0 20 0.05 1 0 1 0 0 0
.............................................................................................................................................................................................................GCTTATCAGGCGGTATCGTGG......................... 21 0 20 0.05 1 0 0 1 0 0
.....................................................................................................................................TGCCGTTAGTTTTGAGAAA................................................................................................... 19 2 20 0.05 1 1 0 0 0 0
.................................................................................................................................TCCCTGCCGTTAGTTTTGAGGAGG.................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................GAACAAAAAGCTTATCAGGCGGT................................ 23 0 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................GAACAAAAAGCTTATCAGGCGGTATC............................. 26 0 20 0.05 1 1 0 0 0 0
........................................TGCCTCAGAGGTAGACGTCCGGAGG.......................................................................................................................................................................................... 25 1 20 0.05 1 0 0 0 0 1
.......................................................................TTCCGTAACATTGTTAAGTCCCAAGAA......................................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................AGAATGTGGATACTTCGGCAGG.......................................................... 22 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................................................................CTGAATGTGGATACGTCGGC............................................................. 20 3 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................................................TATCGTGGTCCGTATGTGGTTCATA........ 25 0 20 0.05 1 1 0 0 0 0
.....................AGAGAACGGAGGAGGTCGATGCCTC............................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0 0
..........................................................................................................................CATCACCTCCCTGCCGTTAGTTTTGAG...................................................................................................... 27 0 20 0.05 1 0 1 0 0 0
..CTAACCGAACGGTTGGGTGAGAGAACG.............................................................................................................................................................................................................................. 27 0 20 0.05 1 0 0 1 0 0
...................................................................................GTTAAGTCCCAAGAATATAATTCGGA.............................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0
.....................................................................................................................CGAAGCATCACCTCCCTGCCG................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0
.......................TGAACGGAGGAGTTCGATGCCTC............................................................................................................................................................................................................. 23 2 20 0.05 1 1 0 0 0 0
...TAACCGAACGGTTGGGTGAGA................................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.........................................................................................................................................................................TAAGAATGTGGATACTTCGGC............................................................. 21 0 20 0.05 1 0 1 0 0 0
....................................................................................TTAAGTCCCAAGAATATAATTCGGATAAT.......................................................................................................................................... 29 2 20 0.05 1 0 0 0 0 1
....................................................................................TTAAGTCCCAAGAATATAATTCG................................................................................................................................................ 23 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................ATTAAGAATGTGGATACTTCGGCA............................................................ 24 0 20 0.05 1 0 1 0 0 0
......................GAGAACGGAGGAGGTCGATG................................................................................................................................................................................................................. 20 0 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

TTGATTGGCTTGCCAACCCACTCTCTTGCCTCCTCCAGCTACGGAGTCTCCATCTGCAGGCCTCTAATCGGAAGGCATTGTAACAATTCAGGGTTCTTATATTAAGCCTTATAATAAGCTTCGTAGTGGAGGGACGGCAATCAAAACTCCTCCCCCTAAAGCATCAATAATTCTTACACCTATGAAGCCGTCCGTGCTTGTTTTTCGAATAGTCCGCCATAGCACCAGGCATACACCAAGTATTTTTTGAA
******************************************************.....................((.........((((((.(((((((((((.((...........))))))))....................))).)).))))))......))************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body		 V119
head
.......................................................................................................................................................................................GAAGCCGTCCGTGCTTGTTTTTCGAAT......................................... 27 0 20 1.55 31 0 31 0 0 0
...................................................................TCGGAAGGCATTGTAACAATTCAGGGT............................................................................................................................................................. 27 0 20 1.30 26 26 0 0 0 0
.........................................CGGAGTCTCCATCTGCAGGCCTCTAAT....................................................................................................................................................................................... 27 0 20 0.70 14 13 1 0 0 0
.TGATTGGCTTGCCAACCCACTCTCT................................................................................................................................................................................................................................. 25 0 20 0.45 9 9 0 0 0 0
..................................................................................................................................................................................................................AGTCCGCCATAGCACCAGGCATACAC............... 26 0 20 0.35 7 0 7 0 0 0
............................................AGTCTCCATCTGCAGGCCTCTAAT....................................................................................................................................................................................... 24 0 20 0.30 6 6 0 0 0 0
......................................................................................................................................................................................................TGTTTTTCGAATAGTCCGCCATAGCAC.......................... 27 0 20 0.25 5 5 0 0 0 0
..........................................GGAGTCTCCATCTGCAGGCCTCTAAT....................................................................................................................................................................................... 26 0 20 0.25 5 0 0 5 0 0
...........................GCCTCCTCCAGCTACGGAGTCTCCAT...................................................................................................................................................................................................... 26 0 20 0.20 4 4 0 0 0 0
.......................................................................................................................................................................................GAAGCCGTCCGTGCTTGTTTTTCGA........................................... 25 0 20 0.20 4 4 0 0 0 0
...........................................................................CATTGTAACAATTCAGGGTTCTTATAT..................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0
..........................................................................GCATTGTAACAATTCAGGGTTCTTATA...................................................................................................................................................... 27 0 20 0.20 4 4 0 0 0 0
........................................ACGGAGTCTCCATCTGCAGGCCTCTAAT....................................................................................................................................................................................... 28 0 20 0.15 3 0 0 0 3 0
...................................................................................................................................................................................CTATGAAGCCGTCCGTGCTTGTTT................................................ 24 0 20 0.15 3 0 3 0 0 0
............................................................................................................................AGTGGAGGGACGGCAATCAAAACT....................................................................................................... 24 0 20 0.15 3 0 0 0 3 0
....................................................................................................................................GACGGCAATCAAAACTCCTCCCCCT.............................................................................................. 25 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................................................GTGCTTGTTTTTCGAATAGTCCGCCA................................ 26 0 20 0.10 2 2 0 0 0 0
.................................................................................................................................................................................................GTGCTTGTTTTTCGAATAGTCCGC.................................. 24 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................CTCCTCCCCCTAAAGCATCAATAATT............................................................................... 26 0 20 0.10 2 2 0 0 0 0
...........................................................................................................................................................................................CCGTCCGTGCTTGTTTTTCGAAT......................................... 23 0 20 0.10 2 2 0 0 0 0
..................................................................................................................................................................................CCTATGAAGCCGTCCGTGCTTGTTT................................................ 25 0 20 0.10 2 2 0 0 0 0
..GATTGGCTTGCCAACCCACTCTCT................................................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
......................................................................GAAGGCATTGTAACAATTCAGGGTTCT.......................................................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................................CCATAGCACCAGGCATACACCAAGTAT........ 27 0 20 0.10 2 2 0 0 0 0
.................................................................................................TATATTAAGCCTTATAATAAGCTTCGT............................................................................................................................... 27 0 20 0.10 2 2 0 0 0 0
............................................................................................................................AGTGGAGGGACGGCAATCAAAAC........................................................................................................ 23 0 20 0.10 2 0 2 0 0 0
.TGATTGGCTTGCCAACCCACTCTC.................................................................................................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0 0
.........TTGCCAACCCACTCTCTTGCCTCCT......................................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...........................................................................................................CTTATAATAAGCTTCGTAGTGGAGGG...................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
...........................GCCTCCTCCAGCTACGGAGTCTCCA....................................................................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
........................................ACGGAGTCTCCATCTGCAGGCCT............................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0
...........................................GAGTATCCATCTGCAGGCCTC........................................................................................................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
...................................................................................................................................................................................................GCTTGTTTTTCGAATAGTCCGCCATAG............................. 27 0 20 0.05 1 1 0 0 0 0
............................................AGTCTCCATCTGCAGGCC............................................................................................................................................................................................. 18 0 20 0.05 1 0 0 1 0 0
..........................................................................................................................................................................................................................TTAGCACCAGGCATACACCAAGT.......... 23 1 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................GAAGCCGTCCGTGCTTGTTT................................................ 20 0 20 0.05 1 1 0 0 0 0
..........................TGCCTCCTCCAGCTACGGAGTCT.......................................................................................................................................................................................................... 23 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................GAAGCCGTCCGTGCTTGTTTT............................................... 21 0 20 0.05 1 1 0 0 0 0
......................................................TGCAGGCCTCTAATCGGAAGGCATT............................................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
.................................................................................................................................................................................ACCTATGAAGCCGTCCGTGCTTGT.................................................. 24 0 20 0.05 1 1 0 0 0 0
.................................................................AATCGGAAGGCATTGTAACAA..................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
............................................................CCTCTAATCGGAAGGCATTGTAACAA..................................................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................CGTGCTTGTTTTTCGAATAGTCCGCCA................................ 27 0 20 0.05 1 1 0 0 0 0
............................................AGTCTCCATCTGCAGGCCTCTAA........................................................................................................................................................................................ 23 0 20 0.05 1 0 0 1 0 0
...............................................................................................................................GGAGGGACGGCAATCAAAACC....................................................................................................... 21 1 20 0.05 1 0 1 0 0 0
................................................................................................................................................................................................CGTGCTTGTTTTTCGAATAGT...................................... 21 0 20 0.05 1 0 0 0 0 1
....................................................................................................................................................................................................................TCCGCCATAGCACCAGGCATACAC............... 24 0 20 0.05 1 1 0 0 0 0
.....................................................................GGAAGGCATTTTAACAATTCAGGGT............................................................................................................................................................. 25 1 20 0.05 1 1 0 0 0 0
................................................................................................................................GAGGGACGGCAATCAAAACTC...................................................................................................... 21 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................GCTTCGTAGTGGAGGGACGGCAAT.............................................................................................................. 24 0 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................CCGTCCGTGCTTGTTTTTCGAA.......................................... 22 0 20 0.05 1 1 0 0 0 0
.......................................................................................................AAGCCTTATAATAAGCTTCGTAGT............................................................................................................................ 24 0 20 0.05 1 1 0 0 0 0
.TGATTGGCTTGCCAACCCACTATCT................................................................................................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0
...............................CCTCCAGCTACGGAGTCTCCATCTGCA................................................................................................................................................................................................. 27 0 20 0.05 1 1 0 0 0 0
.............................................................................................................................GGGGAGGGACGGCAATCAAAACTCCT.................................................................................................... 26 1 20 0.05 1 0 1 0 0 0
.......................................................................AAGGCATTGTAACAATTCAGGGTTCT.......................................................................................................................................................... 26 0 20 0.05 1 1 0 0 0 0
..............................................................................CGTAACAATTCAGGGTTCTTATAT..................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
..............................................................................................................................................................................................................GAATAGTCCGCCATAGCACCAGGCAT................... 26 0 20 0.05 1 0 0 1 0 0
................................................................................................................................................................................CACCTACGAAGCCGTCCGTGCTTGTT................................................. 26 1 20 0.05 1 0 1 0 0 0
...............................................................CTAATCGTAAGGCATTGTAACAAT.................................................................................................................................................................... 24 1 20 0.05 1 0 1 0 0 0
........................................................................................................................TCGTAGTGGAGGGACGGCAATCA............................................................................................................ 23 0 20 0.05 1 0 0 0 1 0
..........................................GGAGTCTCCATCTGCAGGCCTCT.......................................................................................................................................................................................... 23 0 20 0.05 1 0 0 1 0 0
..................................................................................................................................................................................CCTATGAAGACGTCCGTGCTTGTT................................................. 24 1 20 0.05 1 0 1 0 0 0
...........................................................................................................................................................................................................................TAGCACCAGGCATACACCAAGTATT....... 25 0 20 0.05 1 0 1 0 0 0
..........................................................................................................................GTAGTGGAGGGACGGCAATC............................................................................................................. 20 0 20 0.05 1 1 0 0 0 0
.......................................................................................................................................................................................................GTTTTTCGAATAGTCCGCCAT............................... 21 0 20 0.05 1 0 1 0 0 0
....................................................................CGGAAGGCATGGTAACAATTCAGGGT............................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0
...................................................................TCGGAAGGCATTGTAACAATTCAGG............................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0 0
...................................................................................................................................................................................................GCTTGTTTTTCGAATAGTCCGTCAT............................... 25 1 20 0.05 1 1 0 0 0 0
..............................................................................TGTAACAATTCAGGGTTCTTAT....................................................................................................................................................... 22 0 20 0.05 1 0 0 0 1 0
.....................................................................................................................................................CTCCCCCTAAAGCATCAATAAT................................................................................ 22 0 20 0.05 1 1 0 0 0 0
....................................AGCTACGGAGTCTCCATCTGCAGGCC............................................................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0 0
.........................................CGGAGTCTCCATCAGCAGGCCTCTAATC...................................................................................................................................................................................... 28 1 20 0.05 1 1 0 0 0 0
...........GCCAACCCATTCTCTTGCCTC........................................................................................................................................................................................................................... 21 1 20 0.05 1 1 0 0 0 0
..........................................................................................GGGTTCTTATATTAAGCCTTATAAT........................................................................................................................................ 25 0 20 0.05 1 1 0 0 0 0
...............................................CTCCATCTGCAGGCCTCTAA........................................................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0 0
.....................................................................................................................................................................................................................CCGCCATAGCACCAGGCGTAC................. 21 1 20 0.05 1 1 0 0 0 0
..................................................................................................................................................................................................................AGTCCGCCATAGCACCAGGCAT................... 22 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004958:2142604-2142854 + dwi_3833 AACTAA-CCGAACGGTTGGGTGAGAGAACGGA--------G---GAGGT-CGA---TGCCTCAGAGGTAGACGTCCGGAGATTAGCCTTCCGTAAC-ATTGTTAAGTCCCAAGAATATAATTCGGAATATTATTCGAAGCATCACCTCCCTGCCGTTAGTTTTGAGGAGGGGGATTTCGTAGTTATTAAGAATGTGGATACTTCGGCAGGCACGAACAAAAAGCTTATCAGGCGGTATCGTGGTCCGTATGTGGTTCATAAAAAACTT
droVir3 scaffold_12936:259065-259315 - AATTAA-CTGAATATTTAGATGAAAACTATAT--------T---CTTGATATT---CCGGATT-TATTAAATATTCGCAAGATGTCTTCCGACAAA-AGCGAAAATGCTCAACGAAAATGTGCTTATTATTTTCAGGAAAATCATAAAAATCATATAAAATTCTCTGCAGGAGATTTTGTAGTCATGAGAAACATTGATATTACCATTGGCACAAACAAGAAATTTATTGCTAAGTACAAAGGTCCATATTGTATTAAAAAGGTGCTC
droMoj3 scaffold_6475:43466-43725 + GTTTAG-GAGAGCAATTAGAGAAAATAATAGGATTAGATATA-TGCAGTTC-A---CAGAATT-TAGAAGATATTAGAGAACAAGCGCAACATTAT-CAATCTGCAGCACAAACACGGAATGAAGAGAACTTTAATAATGCTAGGAAAGCTGCAAAAGTATACAAGCCAGGAGATTATGTAATGGTTAAGAATTTTGACAACACGGTGGGAATATCAAGGAAATTAATACCCAAATCCAAAGGACCATATGTCATAGATAAAGTACTG
dp5 Unknown_singleton_867:4952-5202 + CGTTAA-CAGAATACTTAGATGATAAACAAGA--------C---CGAACTCAA---AGCGATT-TAGAATCAGTACGTAAGAAATCTTTGGATAAA-ATCGAGCATTGTCAGCAGAAGAGTGAAGAGTATTTTGAAAGGAATCACAAAAATCATATTGAGTTCTTGGAAGGCGATTTCGTTGTAATGAGAAACATTGACACCACAATAGGTACAAATAAAAAATTTGTTCCGAAGTACAGGGGTCCGTACATCATCAAGAAGGTATTG
droPer2 scaffold_9675:695-945 - CGTTAA-CAGAATACTCAGATGATAAACAAGA--------C---CGAACTCAA---AGCGATT-TAGAATCAGTACGTAAGAAATCTTTGGATAAA-ATCGAGCATTGCCAGCAGAAGAGTGAAGAGTATTTTGAAAGGAATCACAAAAATCATATTGAGTTCTTGGAAGGCGATTTCGTTGTAATGAAAAACATTGACACCACAATAGGTACAAATAAAAAATTTGTTCCGAAGTACAGGGGTCCGTACATCATCAAAAAGGTATTG
droAna3 scaffold_13045:531005-531248 + GTCTTA-AAGAAACCTTACAAGGACACTGCGA--------AAACGA------------AAGAA-TTGAAATTATAAGAGAAGAAGCGAGAAAAAGG-GAAAAACAATTACAGAGTTATAACGAAAGAACAAAAAATGAAAAGAGAAAAAAATCGATTGTATACAAATTAGGAGATTACGTAGTTGTAAAAAACTTTGACTCTCACACAGGTATTTCAAAAAAACTGGTCCCAAGGTTTAGAGGTCCGTTTAAAGTAATAAAAGTATT-
droBip1 scf7180000396769:1209-1461 + AATTAA-GGCAAAAGTTAGAAGAATTAGATAA--------TACTGATAATGTT---AGGAATT-TAGACGAAATTAGGAAAAGAGGAACAGAGTGTACAAACAAAGTTGCAGAAAGACAATGAAAGAAATTACAATGAAAAAAGGAAAGCGAGTTCAAAATACAAGGTAGGAGATTATATCGTGGTTAAGAATTTTGATTGTACTGTAGGCGTTGCAAGAAAATTAATACCCAAACATAAAGGTCCATTTGTAATAGACAAAAT--TT
droKik1 scf7180000301584:22068-22318 - AATTAT-CTGAGTACATTGAAGACAAGTTTAA--------T---TTAGAGCAA---GAAGACT-TAGAGACTATCCGTTTGGATGCTAATAGGAAT-ATTATACGATCACAATATAAAAATGAGCAATATTATGCAAAGAAACATAAAGCCCCTTTGGAATATAAAGTTGGAGATTTTGTAGCCATACGTAATGTTGATACAACACCTGGAATTAATAAGAAATTCGCACCTAAGTATCGCGGACCTTATAAAGTAAATAGAGTATTT
droFic1 scf7180000453434:17846-18096 - AATTAA-CAGAATATATTGAGGAAAAGTTCAA--------T---TTAGAGCAA---CAAGATA-TAGGTACAATTCGTTCAGATGCCAATAAGAAT-ATTCTGCAGTCACAATATAAGAATTAAAAGTATTATAAAAAGAAACATAAAGCCCCATTAGAATATAAAGTTGGAGATTTCGTAGCTATATGTAATATTGATACAACACCTGGAATTAATAAAAAATTTGCACCTAAGTATCGTGGCCCGTATAAAGTAAAAAGAGTATTT
droEle1 scf7180000490971:383315-383563 - CATTAA-CAGAATACTTAGATGATAGAAATGA--------T---ATACCACAG---AGTGATT-TAGAAAATGTGCGTAAGAATTCTTCAGATAAA-ATAGAACAGTGCCAGAAAG--GAGCAAGAATATTTTCAGAAAAATCATAAAGATCATATAGAATTTGAGGAAGGCGATTTTGTTGTAATGCGAAACATTGACACTACAATTGGTACAAACAAAAAGTTTGTACCAAAGTACAAAGGAACATATATCATTAAAAAGATATTG
droRho1 scf7180000771362:35-285 - CATTGA-CAGAATATTTAGATGATAGAAATGA--------T---AGACCACAG---TGCGATT-TAGGAAATGTCCGTAAGAATTCTTCAGATAAA-ATAGAACAGTCTCAGAAAAGAAGCAAGGAATATTATCAGAAAAATCACAAAAGTCATGTAGAATTCGAAGAAGGCGATTTTGTTGTAATGAGAAACATTGACACCACAATTGGTACAAATAAAAAATTTGTACCGAAGTACAAAGGACCATACGTCGTTAAAAGAATTTTG
droBia1 scf7180000299158:207-447 - CATTAA-CAGAAG-CTTAGATGACAGAAATGA--------T---ATACCTCAG---TGTGATT-TAGAAAATGTCCGTAAGAACTCTTCAGATAAA-ATAGAACAGTGTCAAAAAAGAAGCAAAGAATATTTTCAGAAAAATC---------ATATAGAATTTGAGGAAGGCGATTTTGGTGTAATGCGAAACATTGACACCACAATGGTTACAAATAAAAAATTTGAGCTAAAGTACAAAGGACCATATATCGTTAAAAAGATATTG
droTak1 scf7180000415577:8325-8575 - CATTAA-CAGAATATTTTGATGATAGAAATTT--------T---AGACCACAA---TGCGATT-TAGGAAATGTCCGTAAGAACTCTTCAGATAAA-ATATAACAGTGTCAGAAAAGAAGCAAGGAACATTTTCAGAAGAATCACAAAAGCCGTGTAGAATTCGAAGAAGGTGATTTTGTTGTAATGAGAAACATTGACACCACAATTGGTACGAATAAAAAATTTGTACCGAAGTACAAAGGACCATACGTCGTTAAAATAATTTTG
droEug1 scf7180000408089:2328-2581 + AGCTCA-CCGAGTATTTGGTAGAAAAATTTGA--------T---CAGGAGAAACCGCGATGTT-TGGATACAGTAAGGGACGAAGCACTTGAGAAT-ATATGTCAATCACAGGTCCGAAATGAAACCGCATACGGCTTAAGGCATAAGGCACCTACGTTGTACAAGGTCGATGAATTTGTTGCTATTCGTAATGTGGATGTGACTTCAGGGGATTGTAAGAAGTTTGCACCCAAGTATCGTGGCCCATATAGAGTAAACCGTGTTTTT
dm3 chr2RHet:1076383-1076636 + AATTAA-AAGAAAAACTAGAGGAATTAGAAAA--------TACTGAAGAAGAT---AGGGATT-TGGTAAAAATTAGAAATGAAGTTGAAAATAAT-CAAAAAAAGGCTCAAGCGTATAATAAAACACATTATGACAAGACCGCCAGACAGCCATCAGAATACAAAAAAGGAGATTATGTGATGGTTAAAAATTTCGACAGTACAGCAGGCATCTCTAGAAAATTGATTCCAAAGTGTAAAGGCCCATATGTGATATCTAAAGTATTA
droSec2 scaffold_936:8391-8643 + AATTTAAAAGGAAAACTAGAGGAGTTAGA-AA--------TACTGAAGAAGAT---AGGGATT-TGGTAAAAATTAGAAATGAA-GTTGAAATAAT-CAAAAAAAGGCTCAAGCGTATAATAAAACACATTATCACAAGACCGCCAGACAGCCATCAGAATACAAAAAAGGAGATTATGTGATGGTTAAAAATTTCGACAGTACAGCAGGCATCTCTAGAAAATTGATTCCAAAGTGTAAAGGTCCATATGTGATATCTAAAGTATTA
droYak3 v2_chr2h_random_001:50734-50976 - CATTAA-CGGAATATTTAGATGATAGAACTGA--------T---ATGGCACAA---TGCGATT-TAGAAAACGTTCGTAAGAACTCCTTAAATAAA-ATAGAACAGTGTCAGC--------GAAGAACATTTTCAGAAAAATCATAAGAGTCACGTAGAATTTTTCGAAGGCGATTTTGTTGTGATGAGAAACATTGACACCACAATCGGCACAAATATGAAATTTGTACCTAAATATAAGGGCCCATACGTCATTAAACGAATTTTA
droEre2 scaffold_4929:24156179-24156423 - AGCTGT-CTGAGTACTTAGAGAATAAATTCAA--------T---GATGAACCT---AGAGATC-TTGTAAGCATCCGTGAGAACGCATCGGTTAAT-ATTCAAAATTCAAAGATAAGAAATGATGAGTCATATAGTAGAAAACATAGATCTCCTCGTGAATATAAAGTAGGTTATTATGTGCCTATAAGAAATGTTGATACTAGTGCAGGAATTAATAAGAAGTTTGCCCCTAAGTACCGTGGGCCTTATAGGATAAGTC------GT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
AACTAA-CCGAACGGTTGGGTGAGAGAACGGA--------G---GAGGT-CGA---TGCCTCAGAGGTAGACGTCCGGAGATTAGCCTTCCGTAAC-ATTGTTAAGTCCCAAGAATATAATTCGGAATATTATTCGAAGCATCACCTCCCTGCCGTTAGTTTTGAGGAGGGGGATTTCGTAGTTATTAAGAATGTGGATACTTCGGCAGGCACGAACAAAAAGCTTATCAGGCGGTATCGTGGTCCGTATGTGGTTCATAAAAAACTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....................................................................................................TTAAGTCCCAAGAATATAATTCGGA..............................................................................................................................................25200.35700070
.................................................................................................................................................................................................GTGGATACTTCGGCAGGCACG......................................................21200.30600150
...............................................................................................................................TATTATTCGAAGCATCACCTCCCTG....................................................................................................................25200.25505000
......................................................................................................TAAGTCCCAAGAATATAATTCGGA..............................................................................................................................................24200.20404000
.................................................................................................................................................................................................................................TATCAGGCGGTATCGTGGTCCGT....................23200.20400040
.......................................................................................................................................................................................TATTAAGAATGTGGATACTTCGGC.............................................................24200.20400040
..................................................................................................................................TATTCGAAGCATCACCTCCCTGCCGT................................................................................................................26200.15303000
..................................................................................................................................................TCCCTGCCGTTAGTTTTGAGG.....................................................................................................21200.15301110
...................................................................................................................................ATTCGAAGCATCACCTCCCTGC...................................................................................................................22200.15303000
.................................................................................................................................................................................................................GCACGAACAAAAAGCTTATCAGGCGG.................................26200.15302010
.....................................................................................................................................TCGAAGCATCACCTCCCTGCCGTTAGTTT..........................................................................................................29200.15303000
...................................................................................................................................ATTCGAAGCATCACCTCCCTGCCGT................................................................................................................25200.10202000
.............................................................................................................CAAGAATATAATTCGGAATATTATTC.....................................................................................................................................26200.10202000
...................................................................................................................................................................................................................................TCAGGCGGTATCGTGGTCCGTATG.................24200.10202000
....................................................A---TGCCTCAGAGGTAGACGTCC................................................................................................................................................................................................21200.10200101
.......................................................................................................................................................................................TATTAAGAATGTGGATACTTCGGCA............................................................25200.10200020
.............................................................................................................................................................................................................................................TCGTGGTCCGTATGTGGTTCA..........21200.10200020
.............................................................CAGAGGTAGACGTCCGGAGATTAGCCT....................................................................................................................................................................................27200.10202000
.........................................................................................................................................................CGTTAGTTTTGAGGAGGGGGA..............................................................................................21200.10200002
.................................................................................................................................................................................................................................TATCAGGCGGTATCGTGGTCC......................21200.10202000
................................................................................................................................................................................................................................TTATCAGGCGGTATCGTGGTCCG.....................23200.05100010
......................................................................................................................................CGAAGCATCACCTCCCTGCCGTTAGTTT..........................................................................................................28200.05101000
............................................................................................................................................................................GATTTCGTAGTTATTAAGAA............................................................................20200.05100010
..............................................................................................................................................................................................AATGTGGATACTTCGGCAGGCACGA.....................................................25200.05100010
.......................................................................................TTCCGTAAC-ATTGTTAAGTCCCAAGA..........................................................................................................................................................26200.05101000
.....................GAGAGAACGGA--------G---GAGGT-CGA---TGC.................................................................................................................................................................................................................23200.05110000
.............GGTTGGGTGAGAGAACGGA--------G---................................................................................................................................................................................................................................20200.05100100
............................................................................................................................................................................................................................AAGCTTATCAGGCGGTATCGT...........................21200.05100010
.ACTAA-CCGAACGGTTGGGTG......................................................................................................................................................................................................................................................20200.05100001
................................................................................ATTAGCCTTCCGTAAC-ATTG.......................................................................................................................................................................20200.05101000
..................................................CGA---TGCCTCAGAGGTAGACGTCC................................................................................................................................................................................................23200.05100010
......................................................................................................................................CGAAGCATCACCTCCCTGCC..................................................................................................................20200.05101000
....................................................A---TGCCTCAGAGGTAGACGTCCG...............................................................................................................................................................................................22200.05100010
........................................................TGCCTCAGAGGTAGACGTCCG...............................................................................................................................................................................................21200.05100001
........................................................................................TCCGTAAC-ATTGTTAAGTCCCAAGA..........................................................................................................................................................25200.05100010
....................................................................................................................................TTCGAAGCATCACCTCCCTGCCGTTAG.............................................................................................................27200.05101000
..................GGTGAGAGAACGGA--------G---GAGGT-CT........................................................................................................................................................................................................................22200.05101000
................................................................................ATTAGCCTTCCGTAAC-ATTGTT.....................................................................................................................................................................22200.05101000
...........................................................................................................................................................TTAGTTTTGAGGAGGGGGA..............................................................................................19200.05100001
..........................................................................................CGTAAC-ATTGTTAAGTCCCAAG...........................................................................................................................................................22200.05101000
....AA-CCGAACGGTTGGGTGAG....................................................................................................................................................................................................................................................19200.05100010
..................................................................................................................................................................................................................................ATCAGGCGGTATCGTGGTCC......................20200.05100010
............................................................................................................................................................TAGTTTTGAGGAGGGGGATTTT..........................................................................................22200.05100010
..............................................................................AGATTAGCCTTCCGTAAC-...........................................................................................................................................................................18200.05100010
..........................................................................................................................................................................................................................................GTATCGTGGTCCGTATGTGGT.............21200.05100010
....................................................A---TGCCTCAGAGGTAGACGTCCGGAGAT..........................................................................................................................................................................................27200.05101000
.................................................................................................................................................................................CGTAGTTATTAAGAATGTGGA......................................................................21200.05100010
..................................................................................................................................................................................................TGGATACTTCGGCAGGCACGA.....................................................21200.05100010
.........................................................................................................................................................................................................................................GGTATCGTGGTCCGTATGTGGTTC...........24200.05100010
............................................................................................................................................................................................................................................ATCGTGGTCCGTATGTGGT.............19200.05100010
..............................................................................................................................................................................................AATGTGGATACTTCGGCAGGCAC.......................................................23200.05100010
..................................................................................................................................................................................................TGGATACTTCGGCAGGCACGAAC...................................................23200.05101000
...TAA-CCGAACGGTTGGGTGAGAGAACGT.............................................................................................................................................................................................................................................27200.05100010
.............................................................................................................................................TCACCTCCCTGCCGTTAGTTTTGAGG.....................................................................................................26200.05100010
....................................................................................................................................TTCGAAGCATCACCTCCCTGCCGTTAGTT...........................................................................................................29200.05101000
................................................................................................................................................................................................TGTGGATACTTCGGCAGGCAC.......................................................21200.05100010
...............................................GT-CGA---TGCCTCAGAGGTAGACGT..................................................................................................................................................................................................23200.05100010
..............................................................................................................................................................................................AATGTGGATACTTCGGCAGGC.........................................................21200.05100100
.................GGGTGAGAGAACGGA--------G---GAGGT-CG........................................................................................................................................................................................................................23200.05101000
......................................................................................................................................CGAAGCATCACCTCCCTG....................................................................................................................18200.05100010
..................................................................................................................................................................................GTAGTTATTAAGAATGTGGA......................................................................20200.05101000
...................................................................................................................................................................................................................ACGAACAAAAAGCTTATCAGGCGG.................................24200.05100010
.............................................................................................................................................................AGTTTTGAGGAGGGGGATTTCG.........................................................................................22200.05101000
............................................................................................................................................................TAGTTTTGAGGAGGGGGATTTCGA........................................................................................24200.05100010
.....................................................................................................................................................................................................................................AGGCGGTATCGTGGTCCGT....................19200.05100001
.................................................................................................ATTGTTAAGTCCCAAGAAT........................................................................................................................................................19200.05100010
..................................................................................TAGCCTTCCGTAAC-ATTGTTAAGTC................................................................................................................................................................25200.05101000
........................................................................................................................................................................................................................................CGGTATCGTGGTCCGTATGTGGTT............24200.05101000
............................................................................................................................................................................................................................................ATCGTGGTCCGTATGTGGTTCA..........22200.05100010
......................................................................................CTTCCGTAAC-ATTGTTAAGTC................................................................................................................................................................21200.05100010
...................................................................TAGACGTCCGGAGATTAGCCTTCCG................................................................................................................................................................................25200.05101000
......................................................................................................................................CGAAGCATCACCTCCCTGCCGT................................................................................................................22200.05101000
......................................................................................................................................................................................................TACTTCGGCAGGCACGAACAAAAAGC............................................26200.05101000
....................TGAGAGAACGGA--------G---GAGGT-CGA---TGC.................................................................................................................................................................................................................24200.05101000
..............................................................................................................................................................................................................................GCTTATCAGGCGGTATCGTGG.........................21200.05100100
..................................................................................................................................................TCCCTGCCGTTAGTTTTGAGGAGG..................................................................................................24200.05100010
.....................................................................................................................................................................................................................GAACAAAAAGCTTATCAGGCGGT................................23200.05100010
.....................................................................................................................................................................................................................GAACAAAAAGCTTATCAGGCGGTATC.............................26200.05100010
........................................................TGCCTCAGAGGTAGACGTCCGGAGG...........................................................................................................................................................................................25200.05110000
.......................................................................................TTCCGTAAC-ATTGTTAAGTCCCAAGAA.........................................................................................................................................................27200.05101000
............................................................................................................................................................................................AGAATGTGGATACTTCGGCAGG..........................................................22200.05101000
...........................................................................................................................................................................................................................................TATCGTGGTCCGTATGTGGTTCATA........25200.05100010
......................AGAGAACGGA--------G---GAGGT-CGA---TGCCTC..............................................................................................................................................................................................................25200.05100010
...........................................................................................................................................CATCACCTCCCTGCCGTTAGTTTTGAG......................................................................................................27200.05101000
..CTAA-CCGAACGGTTGGGTGAGAGAACG..............................................................................................................................................................................................................................................27200.05100100
....................................................................................................GTTAAGTCCCAAGAATATAATTCGGA..............................................................................................................................................26200.05101000
......................................................................................................................................CGAAGCATCACCTCCCTGCCG.................................................................................................................21200.05101000
...TAA-CCGAACGGTTGGGTGAGA...................................................................................................................................................................................................................................................21200.05100100
..........................................................................................................................................................................................TAAGAATGTGGATACTTCGGC.............................................................21200.05101000
.....................................................................................................TTAAGTCCCAAGAATATAATTCG................................................................................................................................................23200.05100010
........................................................................................................................................................................................ATTAAGAATGTGGATACTTCGGCA............................................................24200.05101000
.......................GAGAACGGA--------G---GAGGT-CGA---TG..................................................................................................................................................................................................................20200.05100100
droVir3
AATTAA-CTGAATATTTAGATGAAAACTATAT--------T---CTTGATATT---CCGGATT-TATTAAATATTCGCAAGATGTCTTCCGACAAA-AGCGAAAATGCTCAACGAAAATGTGCTTATTATTTTCAGGAAAATCATAAAAATCATATAAAATTCTCTGCAGGAGATTTTGTAGTCATGAGAAACATTGATATTACCATTGGCACAAACAAGAAATTTATTGCTAAGTACAAAGGTCCATATTGTATTAAAAAGGTGCTCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................CTGCAGGAGATTTTGTAGTCA...................................................................................2130.331000000001000000000000000000000000000000000000000000000000000000
............................................................................................................................................................AAAATTCTCTGCAGGAGATTT...........................................................................................2130.331000000000000000000000001000000000000000000000000000000000000000
droMoj3
GTTTAG-GAGAGCAATTAGAGAAAATAATAGGATTAGATATA-TGCAGTTC-A---CAGAATT-TAGAAGATATTAGAGAACAAGCGCAACATTAT-CAATCTGCAGCACAAACACGGAATGAAGAGAACTTTAATAATGCTAGGAAAGCTGCAAAAGTATACAAGCCAGGAGATTATGTAATGGTTAAGAATTTTGACAACACGGTGGGAATATCAAGGAAATTAATACCCAAATCCAAAGGACCATATGTCATAGATAAAGTACTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................GAGAACTTTAATAATGCTAGGAAAGC......................................................................................................................26171.06181500012
..................................................................GAAGATATTAGAGAACAAGCG.....................................................................................................................................................................................2111.001100000
..................................................................GAAGATATTAGAGAACAAGCGCA...................................................................................................................................................................................2311.001100000
..................................................................GAAGATATTAGAGAACAAGCGCAA..................................................................................................................................................................................2411.001100000
............................................................................................................................GAGAACTTTAATAATGCTAGGAAA........................................................................................................................24170.244200020
.............................................................................................................................AGAACTTTAATAATGCTAGGAAAGC......................................................................................................................25170.183300000
............................................................................................................................GAGAACTTTAATAATGCTAGGAAAG.......................................................................................................................25170.183300000
.............AATTAGAGAAAATAATAGGATTAGA......................................................................................................................................................................................................................................25200.153000012
............................................................................................................................................................................GATTATGTAATGGTTAAGAATTTTGA......................................................................26200.153200010
............................................................................................................................................................................GATTATGTAATGGTTAAGAATTTTGAC.....................................................................27200.153200010
............................................................................................................................GAGAACTTTAATAATGCTAGGAA.........................................................................................................................23170.122100010
............................................................................................................................GAGAACTTTAATAATGCTAGGAAAGCT.....................................................................................................................27170.122100001
...............................................................................................T-CAATCTGCAGCACAAACACGGA.....................................................................................................................................................23180.112200000
.............AATTAGAGAAAATAATAGGATTAGAT.....................................................................................................................................................................................................................................26200.102100010
..........................................................................................................................AAGAGAACTTTAATAATGCTA.............................................................................................................................21200.102200000
............................................................................................................................................................................GATTATGTAATGGTTAAGAATTTTGACA....................................................................28200.102200000
.............................................................................................................................AGAACTTTAATAATGCTAGGAAAGCTGC...................................................................................................................28170.061100000
.............................................................................................................................AGAACTTTAATAATGCTAGGAAA........................................................................................................................23170.061100000
........................................................................................................................TGAAGAGAACTTTAATAATGCTAGGAA.........................................................................................................................27170.061100000
....................................................................................................................................TAATAATGCTAGGAAAGCTG....................................................................................................................20170.061100000
...........................................................................................................................AGAGAACTTTAATAATGCTAGGAAAGCT.....................................................................................................................28170.061000001
...................................................................................................................................................................................TAATGGTTAAGAATTTTGACAACACGGT.............................................................28180.061100000
..................................................................................................................................................................................GTAATGGTTAAGAATTTTGACAACACGG..............................................................28180.061100000
....................................................................................................TCTGCAGCACAAACACGGAATGAAGAG.............................................................................................................................................27180.061100000
................................................................................................................................................................................................................................................AGGACCATATGTCATAGATA........20200.051100000
................................ATTAGATATA-TGCAGTTC-A---CAGAAT..............................................................................................................................................................................................................25200.051100000
...........................................................................................................................................................................AGATTATGTAATGGTTAAGAATTTTG.......................................................................26200.051100000
..............................................................T-TAGAAGATATTAGAGAACAAGC......................................................................................................................................................................................23200.051100000
...............................................................................................................................................................ATACAAGCCAGGAGATTATGTAAT.....................................................................................24200.051100000
..............................................................................................................................................................................................................TGGGAATATCAAGGAAATTAATACC.....................................25200.051100000
..................................................................GAAGATATTAGAGAACAAGC......................................................................................................................................................................................20200.051000010
.............AATTAGAGAAAATAATAGGATTAGATC....................................................................................................................................................................................................................................27200.051000001
..........................................................................................................................................................................................................................................ATCCAAAGGACCATATGTCATAG...........23200.051100000
...........................................................................................................................................................................AGATTATGTAATGGTTAAGAATTTTGA......................................................................27200.051100000
..........................................................................................................................................................................................................................................ATCCAAAGGACCATATGTCATAGAT.........25200.051100000
.............AATTAGAGAAAATAATAGGATTAGATA....................................................................................................................................................................................................................................27200.051100000
..............................................................................................................................................................TATACAAGCCAGGAGATTATGTAATGGTC.................................................................................29200.051100000
...........................ATAGGATTAGATATA-TGCAG............................................................................................................................................................................................................................20200.051000001
............................................................................................................................................................................GATTATGTAATGGTTAAGAATTTTG.......................................................................25200.051100000
.......................................................................................................................ATGAAGAGAACTTTAATAATGCT..............................................................................................................................23200.051000010
..............ATTAGAGAAAATAATAGGATTAGATA....................................................................................................................................................................................................................................26200.051000010
.............AATTAGAGAAAATAATAGGATTAGATAT...................................................................................................................................................................................................................................28200.051100000
...........................................................................................................................................................................................................................................TCCAAAGGACCATATGTCATAGATAAAG.....28200.051100000
dp5
CGTTAA-CAGAATACTTAGATGATAAACAAGA--------C---CGAACTCAA---AGCGATT-TAGAATCAGTACGTAAGAAATCTTTGGATAAA-ATCGAGCATTGTCAGCAGAAGAGTGAAGAGTATTTTGAAAGGAATCACAAAAATCATATTGAGTTCTTGGAAGGCGATTTCGTTGTAATGAGAAACATTGACACCACAATAGGTACAAATAAAAAATTTGTTCCGAAGTACAGGGGTCCGTACATCATCAAGAAGGTATTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................ATGAGAAACATTGACACCACAATAGG..........................................................26119.181010314000014520
........................................................................................................................................................................................ATGAGAAACATTGACACCACAATA............................................................24114.00440140000013170
......................................................................CAGTACGTAAGAAATCTTTGGATA..............................................................................................................................................................................24113.7341126100001030
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-AT.........................................................................................................................................................................28113.183507000027190
.......................TAAACAAGA--------C---CGAACTCAA---AGCGATT-............................................................................................................................................................................................................26103.0030011100015120
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGAAG...............................................................................................................................................26122.583101000001290
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-...........................................................................................................................................................................26112.552805000006170
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-A..........................................................................................................................................................................27112.452705000001660
......................................................................CAGTACGTAAGAAATCTTTGGATAA.............................................................................................................................................................................25112.2725013000002100
.........................................................................................................................................................................................TGAGAAACATTGACACCACAATAGG..........................................................25112.182403000001200
........................................................................................................................................................................................ATGAGAAACATTGACACCACAAT.............................................................23112.002201800000040
........................................................................................................................................................................................ATGAGAAACATTGACACCACAATAG...........................................................25111.912101400000610
......................................................................CAGTACGTAAGAAATCTTTGGA................................................................................................................................................................................22111.82200700100390
......................................................................CAGTACGTAAGAAATCTTTGGAT...............................................................................................................................................................................23111.82200810000560
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTGA.................................................................................................................................................25131.542000000102170
....................TGATAAACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................25101.40140610000430
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................27121.331600000001150
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGAA................................................................................................................................................25131.311702000004110
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGA.................................................................................................................................................24131.231600000001150
........................................................................................................................................................................................................................TAAAAAATTTGTTCCGAAGTACAGGGG.........................27121.08130500000260
......................................................................CAGTACGTAAGAAATCTTTGG.................................................................................................................................................................................21111.00110500000330
........................................................................................................................................................................................ATGAGAAACATTGACACCACAA..............................................................22111.00110510000230
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTGAA................................................................................................................................................26130.92120000000570
....................TGATAAACAAGA--------C---CGAACTCAA---AGCGA...............................................................................................................................................................................................................27100.7070300000310
.......................TAAACAAGA--------C---CGAACTCAA---AGCG................................................................................................................................................................................................................23100.7070100000060
....................TGATAAACAAGA--------C---CGAACTCAA---AGCG................................................................................................................................................................................................................26100.7070300000310
........................................................................................................................................................................................ATGAGAAACATTGACACCACA...............................................................21110.6470610000000
.......................TAAACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................22100.6060200000040
...........................CAAGA--------C---CGAACTCAA---AGCGATT-TAGA........................................................................................................................................................................................................26100.6060000000240
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTTCGTTG......................................................................................26120.5870600000010
..................................................................................................TCGAGCATTGTCAGCAGAAGAGT...................................................................................................................................................23130.5470000000070
....................TGATAAACAAGA--------C---CGAACTCAA---AG..................................................................................................................................................................................................................24100.5050200000210
.......................TAAACAAGA--------C---CGAACTCAA---AG..................................................................................................................................................................................................................21100.5050000000410
....................................................................................................GAGCATTGTCAGCAGAAGAGTGAAG...............................................................................................................................................25120.5060000000060
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTGAAG...............................................................................................................................................27120.4250000000050
...................ATGATAAACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................26100.4040200000020
.......................TAAACAAGA--------C---CGAACTCAA---AGCGAT..............................................................................................................................................................................................................25100.4040100000210
...................................................................................................CGAGCATTGTCAGCAGAAGA.....................................................................................................................................................20130.3850000000050
....................................................................................................GAGCATTGTCAGCAGAAGAGTGAA................................................................................................................................................24130.3850000000050
..........................................................................................................TGTCAGCAGAAGAGTGAAGAGTATTT........................................................................................................................................26120.3340000004000
..................................................................................................................................................................................................................TACAAATAAAAAATTTGTTCCGAAG.................................25120.3340200000020
...............................A--------C---CGAACTCAA---AGCGATT-TAGAAT......................................................................................................................................................................................................24120.3340000000400
...................................................................................................CGAGCATTGTCAGCAGAAGAGTG..................................................................................................................................................23130.3140000000130
..................................................................................................TCGAGCATTGTCAGCAGAAGA.....................................................................................................................................................21130.3140000000130
...................................................................................................CGAGCATTGTCAGCAGAAGAGT...................................................................................................................................................22130.3140000000040
..........................ACAAGA--------C---CGAACTCAA---AGCGATT-............................................................................................................................................................................................................23100.3031110000000
..........................ACAAGA--------C---CGAACTCAA---AGCGATT-C...........................................................................................................................................................................................................24100.3030000000030
................TAGATGATAAACAAGA--------C---CGAACTCAA---....................................................................................................................................................................................................................26100.3030000000300
.......................TAAACAAGA--------C---CGAACTCAA---AGCGA...............................................................................................................................................................................................................24100.3030000000210
............................................................................................TAAA-ATCGAGCATTGTCAGCAGAAG......................................................................................................................................................25140.2940000000130
.......................................................................AGTACGTAAGAAATCTTTGGATA..............................................................................................................................................................................23110.2730300000000
.......................................................................................................................GTGAAGAGTATTTTGAAAGGAATCA............................................................................................................................25110.2730100002000
........................................................................................................................................................................................ATGAGAAACATTGACACCAC................................................................20110.2730210000000
......................................................................................................................................................................................TAATGAGAAACATTGACACCACA...............................................................23110.2730200000010
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-AA.........................................................................................................................................................................28110.2730100000020
.....................................................................TCAGTACGTAAGAAATCTTTGGAT...............................................................................................................................................................................24110.2730100000020
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTTCG.........................................................................................23120.2530200000010
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGCGATT............................................................................................26120.2530300000000
..............................................................................................................................................................................................AACATTGACACCACAATAGGTACAAA....................................................26120.2530100000020
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGCGAT.............................................................................................25120.2530000100200
.........................................................................................................................................................TATTGAGTTCTTGGAAGGCGATT............................................................................................23120.2530300000000
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................28120.2530100000020
...................................................................................................................................................................................................................................................TCCGTACATCATCAAGAAGGTATTT2580.2520000000020
..................................................................................................TCGAGCATTGTCAGCAGAAGAG....................................................................................................................................................22130.2330000000210
.....................................................................................CTTTGGATAAA-ATCGAGCATTG................................................................................................................................................................22130.2330000000300
...............................................................................................................................TATTTTGAAAGGAATCACAAAAA......................................................................................................................23140.2130100000200
................TAGATGATAAACAAGA--------C---CGAACTCAA---AG..................................................................................................................................................................................................................28100.2020000000020
...............TTAGATGATAAACAAGA--------C---CGAACTC.........................................................................................................................................................................................................................25100.2020100000100
...........................CAAGA--------C---CGAACTCAA---AGCGATT-TAGAA.......................................................................................................................................................................................................27100.2020100000010
...........................CAAGA--------C---CGAACTCAA---AGCGAT..............................................................................................................................................................................................................21100.2020000000200
.......................TAAACAAGA--------C---CGAACTCAA---AGA.................................................................................................................................................................................................................22100.2020000000020
........AGAATACTTAGATGATAAACAAGA--------C---C...............................................................................................................................................................................................................................26100.2020000000200
...........................CAAGA--------C---CGAACTCAA---AGCGATT-TAG.........................................................................................................................................................................................................25100.2021100000000
.....A-CAGAATACTTAGATGATAAACAAGA--------C---................................................................................................................................................................................................................................27100.2020000000020
.......................................................................................................................GTGAAGAGTATTTTGAAAGGAATC.............................................................................................................................24110.1820200000000
.........................................................................TACGTAAGAAATCTTTGGATAAA-AT.........................................................................................................................................................................25110.1820100000010
.....................................................................TCAGTACGTAAGAAATCTTTGGA................................................................................................................................................................................23110.1820200000000
.......................................................................AGTACGTAAGAAATCTTTGGA................................................................................................................................................................................21110.1820200000000
....................................................................................................................................................................................TGTAATGAGAAACATTGACACCACAA..............................................................26110.1820200000000
.........................................................................................................................................................................................TGAGAAACATTGACACCACAATAGGTAC.......................................................28110.1820001000010
.........................................................................................................................................................................................TGAGAAACATTGACACCACAA..............................................................21110.1820200000000
.......................................................................AGTACGTAAGAAATCTTTGGATAAA-...........................................................................................................................................................................25110.1820100000010
.........................................................................................................................................................................................TGAGAAACATTGACACCACAAT.............................................................22110.1820200000000
......................................................................CAGTACGTAAGAAATCTTTG..................................................................................................................................................................................20110.1820001000100
.......................................................................................................................GTGAAGAGTATTTTGAAAGGAATCAC...........................................................................................................................26110.1820000000020
....................................................................................................................................................................................TGTAATGAGAAACATTGACACCACA...............................................................25110.1820200000000
......................................................................................................................................................................................TAATGAGAAACATTGACACCACAA..............................................................24110.1820101000000
........................................................................................................................................................................................ATGAGAAACATTGACACCACAATAA...........................................................25110.1820100000100
..............................................................................................................................................................AGTTCTTGGAAGGCGATTT...........................................................................................19120.1720100001000
..............................................................................................................................................................................................AACATTGACACCACAATAGGTACA......................................................24120.1720200000000
...........................................................................................................................................................TTGAGTTCTTGGAAGGCGA..............................................................................................19120.1720200000000
............................................................................................................................................................TGAGTTCTTGGAAGGCGATT............................................................................................20120.1720200000000
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGCGA..............................................................................................24120.1720100000010
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTTC..........................................................................................22120.1720100000010
.............................AGA--------C---CGAACTCAA---AGCGATT-TAGAATC.....................................................................................................................................................................................................27120.1720000000200
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGC................................................................................................22120.1720010000010
....................................................................................................GAGCATTGTCAGCAGAAGAGTGAAGAG.............................................................................................................................................27120.1720100000010
..................................................CAA---AGCGATT-TAGAATCAGTA.................................................................................................................................................................................................21120.1720000000020
...............................A--------C---CGAACTCAA---AGCGATT-TAGAAA......................................................................................................................................................................................................24120.1720000000020
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGCG...............................................................................................23120.1720000000200
..............................................................................................................................................................................................AACATTGACACCACAATAGGTAC.......................................................23120.1720200000000
....................................................................................................GAGCATTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................26120.1720000000020
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTTCGT........................................................................................24120.1720200000000
.....................................................................................................AGCATTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................25120.1720000000200
.........................................................................................................................................................TATTGAGTTCTTGGAAGGCGA..............................................................................................21120.1720100000100
........................................................................................................................................................................................................................TAAAAAATTTGTTCCGAAGTACAGGG..........................26120.1720000000020
..................................................................................................................................................................................................................................GTTCCGAAGTACAGGGGTCC......................20130.1520200000000
...............................................................................................................................................................................................................................TTTGTTCCGAAGTACAGGGGTC.......................22130.1520000000020
...................................................................................................CGAGCATTGTCAGCAGAAGAG....................................................................................................................................................21130.1520000000020
.....................................................................................................AGCATTGTCAGCAGAAGAGTGA.................................................................................................................................................22130.1520200000000
...................................................................................................................................................................................................................................TTCCGAAGTACAGGGGTCCG.....................20130.1520200000000
............................................................................................TAAA-ATCGAGCATTGTCAGCAGAAGAG....................................................................................................................................................27130.1520000000110
...................................................................................................CGAGCATTGTCAGCAGAAGAGTC..................................................................................................................................................23130.1520000000020
...............................................................................................................................TATTTTGAAAGGAATCACAAAAATCA...................................................................................................................26140.1420000000020
........................................................................................................................................AGGAATCACAAAAATCATATTGAGT...........................................................................................................25140.1420100001000
.............................................................................................................................................................................................................................................CAGGGGTCCGTACATCATCAAGAAGG.....2680.1310000000010
...................................................................................................................................................................................................................................................TCCGTACATCATCAAGAAGGTATT.2480.1310000001000
...........................................................................................................................................................................................................................................TACAGGGGTCCGTACATCATCAAG.........2480.1310000001000
............................................................................................................................................................................................................................................ACAGGGGTCCGTACATCATCAAGA........2480.1310100000000
.......................................................................................................................................................................................................................................................TACATCATCAAGAAGGTATTG2180.1310100000000
...............................................................................................................................................................................................................................................GGGGTCCGTACATCATCAAGAAGGTA...2680.1310000000010
..................................................................................................................................................................................................................................................GTCCGTACATCATCAAGAAGGC....2280.1310010000000
................TAGATGATAAACAAGA--------C---CGAACTCAA---A...................................................................................................................................................................................................................27100.1010000000010
.........................AACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................20100.1010100000000
...........................CAAGA--------C---CGAACTCAA---AGCGATT-TAGAAT......................................................................................................................................................................................................28100.1010100000000
.......................TAAACAAGA--------C---CGAACTCAA---AGCGATG-............................................................................................................................................................................................................26100.1010100000000
................TAGATGATAAACAAGA--------C---CGAACTC.........................................................................................................................................................................................................................24100.1010100000000
...........................CAAGA--------C---CGAACTCAA---AGCGATT-TA..........................................................................................................................................................................................................24100.1010000000100
...............TTAGATGATAAACAAGA--------C---CGAAC...........................................................................................................................................................................................................................23100.1010100000000
...................ATGATAAACAAGA--------C---CGAACTC.........................................................................................................................................................................................................................21100.1010100000000
.......................TAAACAAGA--------C---CGAACTCAA---AGCGATT-CCC.........................................................................................................................................................................................................29100.1010000000010
........................AAACAAGA--------C---CGAACTCAA---AGCGATT-............................................................................................................................................................................................................25100.1010100000000
..............CTTAGATGATAAACAAGA--------C---CG..............................................................................................................................................................................................................................21100.1010100000000
..........................ACAAGA--------C---CGAACTCAA---AGCGA...............................................................................................................................................................................................................21100.1010000000100
...TAA-CAGAATACTTAGATGATAAAC................................................................................................................................................................................................................................................24100.1010100000000
...........................CAAGA--------C---CGAACTCAA---AGCGA...............................................................................................................................................................................................................20100.1010100000000
....................TGATAAACAAGA--------C---CGAACTCAA---....................................................................................................................................................................................................................22100.1010100000000
..........................ACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................19100.1010100000000
.......................TAAACAAGA--------C---CGAACTCAA---A...................................................................................................................................................................................................................20100.1010000000010
...............TTAGATGATAAACAAGA--------C---CGAACTCAA---....................................................................................................................................................................................................................27100.1010000000010
...........................CAAGA--------C---CGAACTCAA---AGCGATT-............................................................................................................................................................................................................22100.1010100000000
.................AGATGATAAACAAGA--------C---CGAACT..........................................................................................................................................................................................................................22100.1010100000000
.....................GATAAACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................24100.1010010000000
...........ATACTTAGATGATAAACAAGA--------C---C...............................................................................................................................................................................................................................23100.1010100000000
....AA-CAGAATACTTAGATGATAAACAAGA--------....................................................................................................................................................................................................................................27100.1010100000000
............TACTTAGATGATAAACAAGA--------C---CGAACT..........................................................................................................................................................................................................................27100.1010100000000
...TAA-CAGAATACTTAGATGATAAACA...............................................................................................................................................................................................................................................25100.1010100000000
..........................ACAAGA--------C---CGAACTCAA---AGCG................................................................................................................................................................................................................20100.1010000000010
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-ATT........................................................................................................................................................................29110.0911000000000
......................................................................................................................................................................................TAATGAGAAACATTGACACCACAATAGG..........................................................28110.0910000000010
................................................................................................................CAGAAGAGTGAAGAGTATTTTGAAAGG.................................................................................................................................27110.0910100000000
......................................................................................................................................................................................TAATGAGAAACATTGACACCAC................................................................22110.0910010000000
.........................................................................................................................GAAGAGTATTTTGAAAGGAATCACA..........................................................................................................................25110.0910100000000
.......................................................................AGTACGTAAGAAATCTTTGGATAAA-A..........................................................................................................................................................................26110.0910100000000
.......................................................................................................................GTGAAGAGTATTTTGAAAGGAAT..............................................................................................................................23110.0910000001000
.....................................................................................................................GAGTGAAGAGTATTTTGAAAGG.................................................................................................................................22110.0910100000000
..........................................................................................................................................................................................GAGAAACATTGACACCACAATAGG..........................................................24110.0910100000000
..........................................................................................................................AAGAGTATTTTGAAAGGA................................................................................................................................18110.0910100000000
.......................................................................................................................GTGAAGAGTATTTTGAAAGGAA...............................................................................................................................22110.0910100000000
....................................................................................................................................................................................TGTAATGAGAAACATTGACACCAC................................................................24110.0910100000000
.......................................................................AGTACGTAAGAAATCTTTGGATAAA-AA.........................................................................................................................................................................27110.0910100000000
CGTTAA-CAGAATACTTAGATGATA...................................................................................................................................................................................................................................................24110.0910100000000
.....................................................................TCAGTACGTAAGAAATCTTTGG.................................................................................................................................................................................22110.0910100000000
......................................................................CAGTACGTAAGAAATCTTTGGTA...............................................................................................................................................................................23110.0910100000000
.........................................................................................................................................................................................TGAGAAACATTGACACCACA...............................................................20110.0910100000000
......................................................................CAGTACGTAAGAAATCTTTGGATAAA-AAA........................................................................................................................................................................29110.0910100000000
..........................................................................................................................................................................................GAGAAACATTGACACCACAATAGGTA........................................................26110.0910001000000
........................................................................................................................................................................................ATGAGAAACATTGACACCACAATAGA..........................................................26110.0910100000000
.........................................................................................................................................................................................TGAGAAACATTGACACCACAATAGGTACC......................................................29110.0910000000010
...................................................................................................................................................................................................................................TTCCGAAGTACAGGGGTCCGTACATCAT.............28110.0910100000000
.........................................................................................................................................................................................TGAGAAACATTGACACCACAATA............................................................23110.0910000000010
......................................................................................................................................................................................TAATGAGAAACATTGACACCACAATA............................................................26110.0910000000010
....................................................................................................................................................................................TGTAATGAGAAACATTGACACCA.................................................................23110.0910000000010
......................................................................CAGTACGTAAGAAATCTTTGGAC...............................................................................................................................................................................23110.0910010000000
.....................................................................TCAGTACGTAAGAAATCTTTGGATAAA-AT.........................................................................................................................................................................29110.0910000000010
........................................................................................................................TGAAGAGTATTTTGAAAGGAATC.............................................................................................................................23110.0910010000000
.GTTAA-CAGAATACTTAGATGATAA..................................................................................................................................................................................................................................................24110.0910100000000
....................................................................ATCAGTACGTAAGAAATCTTTGGA................................................................................................................................................................................24110.0910000000010
............................................................................................................TCAGCAGAAGAGTGAAGAGTATTT........................................................................................................................................24120.0810000001000
.........................................................................................................................................................................................................................AAAAAATTTGTTCCGAAGTACAGGG..........................25120.0810100000000
.............................AGA--------C---CGAACTCAA---AGCGATT-TAGT........................................................................................................................................................................................................24120.0810000000010
.........................................................................................................................................................TATTGAGTTCTTGGAAGGCG...............................................................................................20120.0810000000010
............................................CGAACTCAA---AGCGATT-TAGAATCAG...................................................................................................................................................................................................25120.0810100000000
........................................................................................................ATTGTCAGCAGAAGAGTGAAG...............................................................................................................................................21120.0810000001000
......................................................................................................GCATTGTCAGCAGAAGAGTGAAGAG.............................................................................................................................................25120.0810100000000
..............................................................................................................................................................AGTTCTTGGAAGGCGATTTCGTTGTA....................................................................................26120.0810100000000
............................................................................................................TCAGCAGAAGAGTGAAGAGTATT.........................................................................................................................................23120.0810000001000
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTT...........................................................................................21120.0810100000000
..............................................................................................................................................................AGTTCTTGGAAGGCGATTTCG.........................................................................................21120.0810100000000
.................................................................................................................................................................TCTTGGAAGGCGATTTCGT........................................................................................19120.0810000001000
...........................................................................................................GTCAGCAGAAGAGTGAAGAG.............................................................................................................................................20120.0810000001000
........................................................................................................ATTGTCAGCAGAAGAGTGAAGAG.............................................................................................................................................23120.0810100000000
CGTTAA-CAGAATACTTAGATGA.....................................................................................................................................................................................................................................................22120.0810100000000
............................................CGAACTCAA---AGCGATT-TAGAAT......................................................................................................................................................................................................22120.0810000000010
............................AAGA--------C---CGAACTCAA---AGCGATT-TAGAA.......................................................................................................................................................................................................26120.0810100000000
.......................................................................................................CATTGTCAGCAGAAGAGTGAAGAGTA...........................................................................................................................................26120.0810000000010
...............................A--------C---CGAACTCAA---AGCGATT-TAGA........................................................................................................................................................................................................22120.0810100000000
.........................................................................................................TTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................21120.0810000001000
...................................................................................................................................................................TTGGAAGGCGATTTCGTTGT.....................................................................................20120.0810100000000
..........................................................................................................................................................ATTGAGTTCTTGGAAGGCGATTTCGT........................................................................................26120.0810000000010
.........................................................................................................................................................TATTGAGTTCTTGGA....................................................................................................15120.0810000000010
........................................................................................................ATTGTCAGCAGAAGAGTGAAGA..............................................................................................................................................22120.0810000000100
.............................................................................................................................................TCACAAAAATCATATTGAGTTCTTGGAA...................................................................................................28120.0810100000000
............................................................................................................................................................TGAGTTCTTGGAAGGCGATTTCGTT.......................................................................................25120.0810100000000
..........................................................................................................................................................................................................................AAAAATTTGTTCCGAAGTACAGGG..........................24120.0810100000000
..............................................................................................................................................................AGTTCTTGGAAGGCGATTTC..........................................................................................20120.0810100000000
.........................................................................................................................................................TATTGAGTTCTTGGAAGGC................................................................................................19120.0810000000010
.............................AGA--------C---CGAACTCAA---AGCGATT-TAGAA.......................................................................................................................................................................................................25120.0810000000010
.......................................................................................................CATTGTCAGCAGAAGAGTGAAGAG.............................................................................................................................................24120.0810000000100
..........................................................................................................TGTCAGCAGAAGAGTGAAGAGTATT.........................................................................................................................................25120.0810000001000
...............................A--------C---CGAACTCAA---AGCGATT-TAGAA.......................................................................................................................................................................................................23120.0810000000010
.....................................................................................................AGCATTGTCAGCAGAAGAGTGAAG...............................................................................................................................................24120.0810000000010
.............................................................................................................CAGCAGAAGAGTGAAGAG.............................................................................................................................................18120.0810100000000
............................................................................GTAAGAAATCTTTGGATAAC-GC.........................................................................................................................................................................22120.0810100000000
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGAAGAG.............................................................................................................................................28120.0810100000000
..............................................................................................................................................................AGTTCTTGGAAGGCGATTA...........................................................................................19120.0810100000000
....................................................................................................................................................................................................................................TCCGAAGTACAGGGGTCCGTACA.................23120.0810100000000
..........................................................................................................TGTCAGCAGAAGAGTGAAGAGT............................................................................................................................................22120.0810100000000
....................................................................................................................................................................................................................................TCCGAAGTACAGGGGTCCGTACATC...............25120.0810100000000
........................................................................................................................................................................................................................TAAAAAATTTGTTCCGAAGTACAGG...........................25120.0810000000010
...................................................................................................................................................................................................................................TTCCGAAGTACAGGGGTCCGTACA.................24120.0810100000000
..........................................................................................................TGTCAGCAGAAGAGTGAAGA..............................................................................................................................................20120.0810100000000
..............................GA--------C---CGAACTCAA---AGCGATT-TAGAA.......................................................................................................................................................................................................24120.0810000000010
....................................................................................................................................................AATCATATTGAGTTCTTGGAAGGC................................................................................................24120.0810000001000
............................AAGA--------C---CGAACTCAA---AGCGAT..............................................................................................................................................................................................................20120.0810000100000
..................................................................................................................................................................CTTGGAAGGCGATTTCGTTGA.....................................................................................21120.0810000000010
.....................................................................................................AGCATTGTCAGCAGAAGAGTGAA................................................................................................................................................23130.0810100000000
........................................................................................................ATTGTCAGCAGAAGAGTGAA................................................................................................................................................20130.0810100000000
...................................................................................................CGAGCATTGTCAGCAGAAGAGA...................................................................................................................................................22130.0810000000010
...............................................................................................................................................................................................................................TTTGTTCCGAAGTACAGGGGTCCGTA...................26130.0810100000000
................................................................................................................................................................................................................................TTGTTCCGAAGTACAGGGGTCCG.....................23130.0810100000000
............................................................................................................................................................................................................................AAATTTGTTCCGAAGTACAGG...........................21130.0810100000000
..................................................................................................TCGAGCATTGTCAGCAGAAGAGA...................................................................................................................................................23130.0810000000010
...............................................................................................................................................................................................................................TTTGTTCCGAAGTACAGGGGTCCGTAC..................27130.0810100000000
.............................................................................................AAA-ATCGAGCATTGTCAGCAGAAGAG....................................................................................................................................................26130.0810000000010
...................................................................................................CGAGCATTGTCAGCAGAAGAGTGT.................................................................................................................................................24130.0810000001000
..............................................................................................................................................................................................AACATTGACACCACAATAGGTA........................................................22130.0810100000000
................................................................................................................................................................................................................................TTGTTCCGAAGTACAGGG..........................18130.0810100000000
..................................................................................................................................................................................................................................GTTCCGAAGTACAGGGGTCCGTA...................23130.0810000100000
...........................................................................................................................................................................CGATTTCGTTGTAATGAGAAA............................................................................21130.0810000000010
.......................................................................................................................................................................................................................ATAAAAAATTTGTTCCGAAGT................................21130.0810100000000
..................................................................................................TCGAGCATTGTCAGCAGAAGAA....................................................................................................................................................22130.0810000000100
.....................................................................................................AGCATTGTCAGCAGAAGAGTG..................................................................................................................................................21130.0810100000000
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTG..................................................................................................................................................24130.0810000000010
.......................................................................................................CATTGTCAGCAGAAGAGTGAA................................................................................................................................................21130.0810000001000
....................................................................................................GAGCATTGTCAGCAGAAGAGT...................................................................................................................................................21130.0810100000000
..................................................................................................TCGAGCATTGTCAGCAGAAGAGTGC.................................................................................................................................................25130.0810000000010
......................................................................................................GCATTGTCAGCAGAAGAGTGA.................................................................................................................................................21130.0810000000010
......................................................................................................................................................................................................................................CGAAGTACAGGGGTCCGTAC..................20130.0810100000000
.............................................................................................................................................................................ATTTCGTTGTAATGAGAAACA..........................................................................21130.0810000000010
..............................................................................................................................................................................TTTCGTTGTAATGAGAAACATTGACA....................................................................26130.0810000000010
..............................................................................................................................................................................................AACATTGACACCACAATAGGT.........................................................21130.0810100000000
...............................................................................................................................TATTTTGAAAGGAATCACAAAA.......................................................................................................................22140.0710000000100
..................................................................................................TCGAGCATTGTCAGCAGAAG......................................................................................................................................................20140.0710000000010
...........................................................................................ATAAA-ATCGAGCATTGTCAGC...........................................................................................................................................................21140.0710100000000
...................................................................................................CGAGCATTGTCAGCAGAAG......................................................................................................................................................19140.0710000000010
............................................................................................TAAA-ATCGAGCATTGTCAGCA..........................................................................................................................................................21140.0710100000000
.................................................................................................ATCGAGCATTGTCAGCAGAAG......................................................................................................................................................21140.0710000000010
...............................................................................................................................TATTTTGAAAGGAATCACAAAAATC....................................................................................................................25140.0710000000010
........................................................................................................................................AGGAATCACAAAAATCATATTGAG............................................................................................................24140.0710100000000
....................................................................................................................................TGAAAGGAATCACAAAAATCATAT................................................................................................................24140.0710100000000
..............................................................................................AA-ATCGAGCATTGTCAGCAGAAG......................................................................................................................................................23140.0710000000100
...........................................................................................ATAAA-ATCGAGCATTGTCAGCAG.........................................................................................................................................................23140.0710000000010
.................................................................................................ATCGAGCATTGTCAGCAGTT.......................................................................................................................................................20150.0710100000000
droPer2
CGTTAA-CAGAATACTCAGATGATAAACAAGA--------C---CGAACTCAA---AGCGATT-TAGAATCAGTACGTAAGAAATCTTTGGATAAA-ATCGAGCATTGCCAGCAGAAGAGTGAAGAGTATTTTGAAAGGAATCACAAAAATCATATTGAGTTCTTGGAAGGCGATTTCGTTGTAATGAAAAACATTGACACCACAATAGGTACAAATAAAAAATTTGTTCCGAAGTACAGGGGTCCGTACATCATCAAAAAGGTATTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................TAAACAAGA--------C---CGAACTCAA---AGCGATT-............................................................................................................................................................................................................26110.273210000
....................................................................ATCAGTACGTAAGAAATCTTTGGA................................................................................................................................................................................24110.182020000
..........................ACAAGA--------C---CGAACTCAA---AGCGATT-TAGA........................................................................................................................................................................................................27120.172200000
.........................AACAAGA--------C---CGAACTCAA---AGCGAT..............................................................................................................................................................................................................23110.091100000
........................................................................GTACGTAAGAAATCTTTGGATA..............................................................................................................................................................................22110.091010000
.....................................................................TCAGTACGTAAGAAATCTTTG..................................................................................................................................................................................21110.091010000
.....................................................................TCAGTACGTAAGAAATCTTTGGA................................................................................................................................................................................23110.091010000
.....................GATAAACAAGA--------C---CGAACTCAA---AGC.................................................................................................................................................................................................................24110.091100000
.................................................................................................................AGAAGAGTGAAGAGTATTTTGAAA...................................................................................................................................24110.091010000
.........................................................................................................................GAAGAGTATTTTGAAAGGA................................................................................................................................19110.091000001
........................AAACAAGA--------C---CGAACTCAA---AGCGATT-TA..........................................................................................................................................................................................................27110.091100000
...................................................................................................................AAGAGTGAAGAGTATTTTGAAAGGAATA.............................................................................................................................28120.081000001
......................................................................................................................................................TCATATTGAGTTCTTGGAAGGC................................................................................................22140.071010000
....................................................................................................................................................AATCATATTGAGTTCTTGGAAGGCGA..............................................................................................26140.071010000
...................................................................................................................................................AAATCATATTGAGTTCTTGGAAGGC................................................................................................25140.071000001
.......................................................................................................................................................CATATTGAGTTCTTGGAAGG.................................................................................................20150.071000001
.................................................................................................................................................................................................................................TGTTCCGAAGTACAGGGGTCC......................21160.061010000
........................................................................................................................................................ATATTGAGTTCTTGGAAGGC................................................................................................20160.061100000
..................................................................................................................................................................CTTGGAAGGCGATTTCGTTGT.....................................................................................21160.061010000
................................................................................................................................................................................................................................TTGTTCCGAAGTACAGGGGTCCGT....................24160.061010000
...................................................................................................................................................................................................................................................TCCGTACATCATCAAAAAGGT....21170.061010000
droAna3
GTCTTA-AAGAAACCTTACAAGGACACTGCGA--------AAACGA------------AAGAA-TTGAAATTATAAGAGAAGAAGCGAGAAAAAGG-GAAAAACAATTACAGAGTTATAACGAAAGAACAAAAAATGAAAAGAGAAAAAAATCGATTGTATACAAATTAGGAGATTACGTAGTTGTAAAAAACTTTGACTCTCACACAGGTATTTCAAAAAAACTGGTCCCAAGGTTTAGAGGTCCGTTTAAAGTAATAAAAGTATT-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................TTGAAATTATAAGAGAAGAAGCGAGA..................................................................................................................................................................................26190.051010000
.........................................................................................................................GAAAGAACAAAAAATGAAA................................................................................................................................19200.051100000
.........................................................................TAAGAGAAGAAGCGAGAAAAAGG-GA.........................................................................................................................................................................25200.051100000
..........AAACCTTACAAGGACACTA...............................................................................................................................................................................................................................................19200.051100000
.........................................................................................................................................................................................TAAAAAACTTTGACTCTCACACAGGTT........................................................27200.051010000
........................................................................................................................................................CGATTGTATACAAATTAGGAGATTACG.........................................................................................27200.051100000
.........................................................................TAAGAGAAGAAGCGAGAAAAAG.............................................................................................................................................................................22200.051010000
droBip1
AATTAA-GGCAAAAGTTAGAAGAATTAGATAA--------TACTGATAATGTT---AGGAATT-TAGACGAAATTAGGAAAAGAGGAACAGAGTGTACAAACAAAGTTGCAGAAAGACAATGAAAGAAATTACAATGAAAAAAGGAAAGCGAGTTCAAAATACAAGGTAGGAGATTATATCGTGGTTAAGAATTTTGATTGTACTGTAGGCGTTGCAAGAAAATTAATACCCAAACATAAAGGTCCATTTGTAATAGACAAAAT--TTSizeHit CountTotal NormTotal
No Reads
droKik1
AATTAT-CTGAGTACATTGAAGACAAGTTTAA--------T---TTAGAGCAA---GAAGACT-TAGAGACTATCCGTTTGGATGCTAATAGGAAT-ATTATACGATCACAATATAAAAATGAGCAATATTATGCAAAGAAACATAAAGCCCCTTTGGAATATAAAGTTGGAGATTTTGTAGCCATACGTAATGTTGATACAACACCTGGAATTAATAAGAAATTCGCACCTAAGTATCGCGGACCTTATAAAGTAAATAGAGTATTTSizeHit CountTotal NormTotal
No Reads
droFic1
AATTAA-CAGAATATATTGAGGAAAAGTTCAA--------T---TTAGAGCAA---CAAGATA-TAGGTACAATTCGTTCAGATGCCAATAAGAAT-ATTCTGCAGTCACAATATAAGAATTAAAAGTATTATAAAAAGAAACATAAAGCCCCATTAGAATATAAAGTTGGAGATTTCGTAGCTATATGTAATATTGATACAACACCTGGAATTAATAAAAAATTTGCACCTAAGTATCGTGGCCCGTATAAAGTAAAAAGAGTATTTSizeHit CountTotal NormTotal
No Reads
droEle1
CATTAA-CAGAATACTTAGATGATAGAAATGA--------T---ATACCACAG---AGTGATT-TAGAAAATGTGCGTAAGAATTCTTCAGATAAA-ATAGAACAGTGCCAGAAAG--GAGCAAGAATATTTTCAGAAAAATCATAAAGATCATATAGAATTTGAGGAAGGCGATTTTGTTGTAATGCGAAACATTGACACTACAATTGGTACAAACAAAAAGTTTGTACCAAAGTACAAAGGAACATATATCATTAAAAAGATATTGSizeHit CountTotal NormTotal
No Reads
droRho1
CATTGA-CAGAATATTTAGATGATAGAAATGA--------T---AGACCACAG---TGCGATT-TAGGAAATGTCCGTAAGAATTCTTCAGATAAA-ATAGAACAGTCTCAGAAAAGAAGCAAGGAATATTATCAGAAAAATCACAAAAGTCATGTAGAATTCGAAGAAGGCGATTTTGTTGTAATGAGAAACATTGACACCACAATTGGTACAAATAAAAAATTTGTACCGAAGTACAAAGGACCATACGTCGTTAAAAGAATTTTGSizeHit CountTotal NormTotal
No Reads
droBia1
CATTAA-CAGAAG-CTTAGATGACAGAAATGA--------T---ATACCTCAG---TGTGATT-TAGAAAATGTCCGTAAGAACTCTTCAGATAAA-ATAGAACAGTGTCAAAAAAGAAGCAAAGAATATTTTCAGAAAAATC---------ATATAGAATTTGAGGAAGGCGATTTTGGTGTAATGCGAAACATTGACACCACAATGGTTACAAATAAAAAATTTGAGCTAAAGTACAAAGGACCATATATCGTTAAAAAGATATTGSizeHit CountTotal NormTotal
No Reads
droTak1
CATTAA-CAGAATATTTTGATGATAGAAATTT--------T---AGACCACAA---TGCGATT-TAGGAAATGTCCGTAAGAACTCTTCAGATAAA-ATATAACAGTGTCAGAAAAGAAGCAAGGAACATTTTCAGAAGAATCACAAAAGCCGTGTAGAATTCGAAGAAGGTGATTTTGTTGTAATGAGAAACATTGACACCACAATTGGTACGAATAAAAAATTTGTACCGAAGTACAAAGGACCATACGTCGTTAAAATAATTTTGSizeHit CountTotal NormTotal
No Reads
droEug1
AGCTCA-CCGAGTATTTGGTAGAAAAATTTGA--------T---CAGGAGAAACCGCGATGTT-TGGATACAGTAAGGGACGAAGCACTTGAGAAT-ATATGTCAATCACAGGTCCGAAATGAAACCGCATACGGCTTAAGGCATAAGGCACCTACGTTGTACAAGGTCGATGAATTTGTTGCTATTCGTAATGTGGATGTGACTTCAGGGGATTGTAAGAAGTTTGCACCCAAGTATCGTGGCCCATATAGAGTAAACCGTGTTTTTSizeHit CountTotal NormTotal
No Reads
dm3
AATTAA-AAGAAAAACTAGAGGAATTAGAAAA--------TACTGAAGAAGAT---AGGGATT-TGGTAAAAATTAGAAATGAAGTTGAAAATAAT-CAAAAAAAGGCTCAAGCGTATAATAAAACACATTATGACAAGACCGCCAGACAGCCATCAGAATACAAAAAAGGAGATTATGTGATGGTTAAAAATTTCGACAGTACAGCAGGCATCTCTAGAAAATTGATTCCAAAGTGTAAAGGCCCATATGTGATATCTAAAGTATTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................................................................................................TACAAAAAAGGAGATTATGTGATGGT..................................................................................262018.353670000001000000000000000000000000000004010610412201223000000000000000000000000000000302020000000100000000000000000100500000000000000000000000025144174011216808814000000000000000000000000000000000112024001010000235816103000405110011101000000000000000000100000000000000000000000001000000000000000810002111100000013010000000000000161714131700001
.............................................................................................................................CACATTATGACAAGACCGCCAGACAGC....................................................................................................................272012.40248000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000164040000000000000000000000000000000001000000200000000100000000000005001127639450000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000
........................TTAGAAAA--------TACTGAAGAAGAT---AGGGA...............................................................................................................................................................................................................26198.89169000000000000000000000101000000000000001000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110172112110002000000000000000000000000000000000000002011003032000000411000601210140111719000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000118310100000
.............................................................................................................................CACATTATGACAAGACCGCCAGAC.......................................................................................................................24207.101420000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100008000000000300000000000000000000000000000000000000001610001010000000000000123201002518180000000000000000000000000000000000000000000000000000000000000001000100000000100000000000000000000000000
.............................................................................................................................CACATTATGACAAGACCGCCAGACAG.....................................................................................................................26205.7011400000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000001300000204000000000000000000000000000000000200000050000000000000000000000252303317150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CACATTATGACAAGACCGCCAGACA......................................................................................................................25205.5511100000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000002000000000000000000000000000000000000000000000000003000000001000000000000100000000000000000000110000030000000000000000000000232190302101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..........................................................................................................................................................................................TAAAAATTTCGACAGTACAGCAGGCA........................................................26205.3510700000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000103000010200001000000000000000170101487110000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000
.............................................................................................................................CACATTATGACAAGACCGCCAGA........................................................................................................................23204.1583000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020510110000000000000000000000000000000000000010000000160000000040000000000010007116960000000000100000000000000000000000000000000000000000000000003000000000000000300000000000000000400000000
.........................TAGAAAA--------TACTGAAGAAGAT---AGGGA...............................................................................................................................................................................................................25192.795300000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002102110200000000000000000000000000000000000000000001010025000000000000012603012300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001510000000
..........................................................................................................................................................................................TAAAAATTTCGACAGTACAGCAGGCATC......................................................28202.555100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000560000010100326530000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................T-TGGTAAAAATTAGAAATGAAGTT.....................................................................................................................................................................................24202.505000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000020000000000000100000000090005270000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................TAGAAAA--------TACTGAAGAAGAT---AGGGAT..............................................................................................................................................................................................................26192.324400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000040000000000000000000000000000000000000000000020111300000000000000040203740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................TT-TGGTAAAAATTAGAAATGAAGTT.....................................................................................................................................................................................25202.204400000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000001000000000000000000000000000000000002000000000000040300000000001120302042000000000000000000000000000000000000000000000000000000000001000000000000000210000000000000001001000000
..............................................................T-TGGTAAAAATTAGAAATGAAGTTGA...................................................................................................................................................................................26202.1543000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000606010640000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................TTAGAAAA--------TACTGAAGAAGAT---AGGGAT..............................................................................................................................................................................................................27192.11400000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000001000000001100000000000000000091106561000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000001200000000
................................................................................................................................................................TACAAAAAAGGAGATTATGTGATGG...................................................................................25201.80360000000100000000000000000000000000020000000011001000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000020000300210110000000000000000000000000000000000001000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000002001010101000000500000000000000000013000000
..................GAGGAATTAGAAAA--------TACT................................................................................................................................................................................................................................18201.7535000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000512801000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TT-TGGTAAAAATTAGAAATGAAGT......................................................................................................................................................................................24201.65330000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000004000000001000000000000050222080000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000001100000000
..................................................................................................................................................................................GTGATGGTTAAAAATTTCGACAGT..................................................................24201.65330000000000000000000000010000000000000000030000001000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000000007000000001000000000000510103200000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000001000000000
................................................................................................................................................................TACAAAAAAGGAGATTATGTGATGGTT.................................................................................27201.55310000000000000000000001000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001010100004200000000000000000000000000000000000200000000000002000010000000000000100000000000000000000000000000000000000000000000000000000000002000000200000000000000000000000000323000000
.........................................................................................................................................................................................TTAAAAATTTCGACAGTACAGCAGGCA........................................................27201.503000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000000000000000000000000000000000000000000800010450000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TAA-AAGAAAAACTAGAGGAATTAGA...............................................................................................................................................................................................................................................25191.42270000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000100000000000000000000000004000000000000001001000100000100000001101107200000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000
....................................................................................................................................................CAGCCATCAGAATACAAAAAAGGAGAT.............................................................................................27201.40280000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005000000002000000000000000000000000000000000000201000000000000000000000001040106020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000
....................................................T---AGGGATT-TGGTAAAAAT..................................................................................................................................................................................................18201.40280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000949600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TAGAAAA--------TACTGAAGAAGAT---A...................................................................................................................................................................................................................21191.372600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013140500000000000000001000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................TCAGAATACAAAAAAGGAGATTATGT........................................................................................26201.35270000000000000000000000000000000000001000010000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100210000000000000000000000000000000000000000000000000000000000012001000000130300010000000000000000000000000000000000000000000000000000000000000000000100000000300000000000000000000000003
..........................................................................................AATAAT-CAAAAAAAGGCTCAAGCGTA.......................................................................................................................................................26161.31210000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000001000004000000020104010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000002100100000
............................................................................................TAAT-CAAAAAAAGGCTCAAGCGTA.......................................................................................................................................................24161.25200000000000000000000000010000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000010000000000020102230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000
.............................................................TT-TGGTAAAAATTAGAAATGAAGTTGA...................................................................................................................................................................................27201.20240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000002000000000000000000000090103140000000000000000000000000000000000000000000000000000000000000000010000000000010000000000000000000000000
.................................................................................................................................................................................................TTCGACAGTACAGCAGGCATCTCTAGA................................................27201.20240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020108490000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TTAGAAAA--------TACTGAAGAAGAT---A...................................................................................................................................................................................................................22191.11210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001442500000000000000010101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.............................................................TT-TGGTAAAAATTAGAAATGAAGTTG....................................................................................................................................................................................26201.10220000000000000000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000006000000000000000000000030000140000000000000000000000000000000000000000000000000000000000002000001000000000100000000000000000000000000
............................................................................................................TCAAGCGTATAATAAAACACATTATG......................................................................................................................................26201.10220000000000000000000000000000000000000000100000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010100000000000000000000000000000000000000003600001100000002000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000
..........................................................................................................................................................TCAGAATACAAAAAAGGAGATTATG.........................................................................................25201.10220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020806310000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000
.............................................................................................................................CACATTATGACAAGACCGCCAGACAGCC...................................................................................................................28201.05210000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000204730000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................CACATTATGACAAGACCGCCAG.........................................................................................................................22201.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000100000000000000000000000000000000000000000005000000000000200000001000301210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
........................................................................................................................TAAAACACATTATGACAAGACCGCCAGA........................................................................................................................28201.00200000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000050106320000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................TACTGAAGAAGAT---AGGGATT-TGGTA.......................................................................................................................................................................................................25200.95190000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100100000000000000000000000000000000000000000000000000000000000140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008
................................................................................................................................................................................................TTTCGACAGTACAGCAGGCATCTCTA..................................................26200.95190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000030000000000000000000060003420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTCGACAGTACAGCAGGCATCTCTAG.................................................26200.95190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030005551000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................A--------TACTGAAGAAGAT---AGGGATT-TGG.........................................................................................................................................................................................................24200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000101000000
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droSec2
AATTTAAAAGGAAAACTAGAGGAGTTAGA-AA--------TACTGAAGAAGAT---AGGGATT-TGGTAAAAATTAGAAATGAA-GTTGAAATAAT-CAAAAAAAGGCTCAAGCGTATAATAAAACACATTATCACAAGACCGCCAGACAGCCATCAGAATACAAAAAAGGAGATTATGTGATGGTTAAAAATTTCGACAGTACAGCAGGCATCTCTAGAAAATTGATTCCAAAGTGTAAAGGTCCATATGTGATATCTAAAGTATTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................AAAATTTCGACAGTACAGCAGG..........................................................22200.1021100
.........................................................................................................................................................................GGAGATTATGTGATGGTTAAAAAT...........................................................................24130.0810001
.............................................................................................AAT-CAAAAAAAGGCTCAAGCG.........................................................................................................................................................21190.0510010
.................................................................................................CAAAAAAAGGCTCAAGCGTATA.....................................................................................................................................................22190.0510010
...............................A--------TACTGAAGAAGAT---AGGG................................................................................................................................................................................................................18200.0510010
.................................................................................................................................................................................................TTCGACAGTACAGCAGGCAT.......................................................20200.0510010
................................................................................................................................................................................................TTTCGACAGTACAGCAGGCATCTCT...................................................25200.0511000
........................................TACTGAAGAAGAT---AGGGATT-TGGA........................................................................................................................................................................................................24200.0511000
..............................................................................................................................................................................................AATTTCGACAGTACAGCAGG..........................................................20200.0511000
.........................................................................................................................................................................................................TACAGCAGGCATCTCTAGAAAATTGA.........................................26200.0511000
..............................AA--------TACTGAAGAAGAT---AGGG................................................................................................................................................................................................................19200.0510010
.........................................................................................................................................................ATCAGAATACAAAAAAGGA................................................................................................19200.0510010
........................................................................................................................................................................................................GTACAGCAGGCATCTCTAGAAAAT............................................24200.0511000
.................................................................................................................................................................................................TTCGACAGTACAGCAGGCATCTCTAGA................................................27200.0510010
..................................................................................................................................................................CAAAAAAGGAGATTATGTGATG....................................................................................22200.0510010
droYak3
CATTAA-CGGAATATTTAGATGATAGAACTGA--------T---ATGGCACAA---TGCGATT-TAGAAAACGTTCGTAAGAACTCCTTAAATAAA-ATAGAACAGTGTCAGC--------GAAGAACATTTTCAGAAAAATCATAAGAGTCACGTAGAATTTTTCGAAGGCGATTTTGTTGTGATGAGAAACATTGACACCACAATCGGCACAAATATGAAATTTGTACCTAAATATAAGGGCCCATACGTCATTAAACGAATTTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................ATAAGGGCCCATACGTCATT............2040.25100100000000
droEre2
AGCTGT-CTGAGTACTTAGAGAATAAATTCAA--------T---GATGAACCT---AGAGATC-TTGTAAGCATCCGTGAGAACGCATCGGTTAAT-ATTCAAAATTCAAAGATAAGAAATGATGAGTCATATAGTAGAAAACATAGATCTCCTCGTGAATATAAAGTAGGTTATTATGTGCCTATAAGAAATGTTGATACTAGTGCAGGAATTAATAAGAAGTTTGCCCCTAAGTACCGTGGGCCTTATAGGATAAGTC------GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................TC-TTGTAAGCATCCGTGAGAACGCA.....................................................................................................................................................................................2560.3320000002

Generated: 05/18/2015 at 08:32 AM