ID:

dwi_382

Coordinate:

scf2_1100000004423:36557-36707 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-8.8 -8.1 -8.1

Flybase annnotation

CDS [Dwil\GK17680-cds]; exon [dwil_GLEANR_17980:5]; intron [Dwil\GK17680-in]

No Repeatable elements found

mature
  1. scf2_1100000012942:811-832 +
  2. dwi_382  scf2_1100000004423:36588-36609 +
star
  1. scf2_1100000012942:842-865 +
  2. dwi_382  scf2_1100000004423:36619-36642 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTAATATATCGATATCCAAAGTATCGATAATAAATAGCTTCCAATAAATTGCAAGCATAGAGTGTGCCAGCTCTAAGCAAATTTATAAACACGATCGCTAAGGATGAATTTCATTTTCAATAATTGTGTAAGTATTTTTGGTTTTTTTTTTATTGTTTTCCTAATCAATTTGGACTAATTTTTGTGATTCCTTATTTTCAGAACGTCACCTTAAATGCACCTGGTGGCCAGGTCCAAAGCCGCCAAAATTC
*********************************************************************************.......(((((((.....(((((((...))))))).....))))))).......*******************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total M045
female body
V118
embryo
V117
male body
......................................................................................................................................................................................................CAGAACGTCACCTTAAATGCACCTGG........................... 26 0 2 1.00 2 1 1 0
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGCACC.............................. 26 0 2 1.00 2 2 0 0
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGC................................. 23 0 2 1.00 2 2 0 0
.................................................TGCAAGCATAGAGTGTGCCAGCTCT................................................................................................................................................................................. 25 0 9 0.78 7 0 7 0
.......................TCGATAATAAATAGCTTCCAAT.............................................................................................................................................................................................................. 22 0 2 0.50 1 1 0 0
.................................................................................TTTATAAACACGATCGCTAAGG.................................................................................................................................................... 22 0 2 0.50 1 1 0 0
................................................................................................................ATTTTCAATAATTGTGTAAGTATT................................................................................................................... 24 0 2 0.50 1 1 0 0
......................................TTCCAATAAATTGCAAGCATA................................................................................................................................................................................................ 21 0 2 0.50 1 1 0 0
.................................................................................TTTATAAACACGATCGCTAAGGATG................................................................................................................................................. 25 0 2 0.50 1 0 1 0
....................................................................................................................................................................................................TTCAGAACGTCACCTTAAATGCA................................ 23 0 2 0.50 1 1 0 0
......................................................................................................................................................................................................CAGAACGTCACCTTAAATGCACCTCG........................... 26 1 2 0.50 1 0 1 0
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGCACCTG............................ 28 0 2 0.50 1 1 0 0
...................................................................................TATAAACACGATCGCTAAGGATGAATT............................................................................................................................................. 27 0 2 0.50 1 1 0 0
...................................................................................TATAAACACGATCGCTAAGG.................................................................................................................................................... 20 0 2 0.50 1 0 1 0
.................................................TGCAAGCATAGAGTGTGCCAGCTC.................................................................................................................................................................................. 24 0 9 0.33 3 3 0 0
............................................................................................GATCGCTATGGATGAAGGT............................................................................................................................................ 19 3 20 0.25 5 1 0 4
...........................................................................................CGATCGCTATGGATGAAGGT............................................................................................................................................ 20 3 9 0.22 2 1 0 1
.................................................TGCAAGCATAGAGTGTGCCAGCTCTAAG.............................................................................................................................................................................. 28 0 8 0.13 1 0 1 0
...................................................CAAGCATAGAGTGTGCCAGCTCTAAG.............................................................................................................................................................................. 26 0 8 0.13 1 0 1 0
........................................................................................................................TAATTGTGTAAGTATTTTTGGTTT........................................................................................................... 24 0 8 0.13 1 0 1 0
.................................................TGCAAGCATAGAGTGTGCCAGCTCTA................................................................................................................................................................................ 26 0 9 0.11 1 1 0 0
.................................................TGCAAGCATAGAGTGTGCCAGC.................................................................................................................................................................................... 22 0 9 0.11 1 1 0 0
................................................CTGCAAGCATAGAGTGTGCCAGCTC.................................................................................................................................................................................. 25 1 9 0.11 1 1 0 0
....................................................AAGCATAGAGTGTGCCAGCTCTAAG.............................................................................................................................................................................. 25 0 9 0.11 1 0 1 0
............................................................................................................................................................................................................GTCAAATTAAATGAACCTGGT.......................... 21 3 9 0.11 1 1 0 0
.................................................TGCAAGCATAGAGTGTGCCTGCTCTA................................................................................................................................................................................ 26 1 9 0.11 1 0 1 0
..........................................................................................................................ATTGTGTAAGTATTTTTGGTT............................................................................................................ 21 0 9 0.11 1 0 1 0
.................................................TGCAAGCATAGAGTGTGCCAGT.................................................................................................................................................................................... 22 1 9 0.11 1 0 1 0
..............................................AATTGCAAGCATAGAGTGTG......................................................................................................................................................................................... 20 0 10 0.10 1 1 0 0
.........................................................TAGAGTGTGCCAGCTCTAAG.............................................................................................................................................................................. 20 0 10 0.10 1 1 0 0
.............................................AAATTGCAAGCATAGAGTGTG......................................................................................................................................................................................... 21 0 10 0.10 1 1 0 0
......................................................................................................................................................................................................CAGAACGTCACCTTTAATGCACCTGG........................... 26 1 11 0.09 1 0 1 0
...........................................................................................................................TTGTGTAAGTATTTTTGGTTT........................................................................................................... 21 0 11 0.09 1 0 1 0
...........................................ATAAATTGCAAGCATAGAGTG........................................................................................................................................................................................... 21 0 12 0.08 1 1 0 0
.............ATCCAAAGTATCGATAATAAATAGC..................................................................................................................................................................................................................... 25 0 14 0.07 1 0 1 0
.............ATCCAAAGTATCGATAATAAATAGCT.................................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0
.........................................CATTAAATTGCAAGTATAGTG............................................................................................................................................................................................. 21 3 20 0.05 1 1 0 0

Anti-sense strand reads

AATTATATAGCTATAGGTTTCATAGCTATTATTTATCGAAGGTTATTTAACGTTCGTATCTCACACGGTCGAGATTCGTTTAAATATTTGTGCTAGCGATTCCTACTTAAAGTAAAAGTTATTAACACATTCATAAAAACCAAAAAAAAAATAACAAAAGGATTAGTTAAACCTGATTAAAAACACTAAGGAATAAAAGTCTTGCAGTGGAATTTACGTGGACCACCGGTCCAGGTTTCGGCGGTTTTAAG
*******************************************************************************************************************.......(((((((.....(((((((...))))))).....))))))).......*********************************************************************************
Read size # Mismatch Hit Count Total Norm Total V118
embryo
M045
female body
V117
male body
V119
head
M020
head
...........................................................................................................TAAAGTAAAAGTTATTAACACATTCAT..................................................................................................................... 27 0 2 15.00 30 22 8 0 0 0
..................TTCATAGCTATTATTTATCGAAGGTTAT............................................................................................................................................................................................................. 28 0 2 15.00 30 28 2 0 0 0
.....................................................................CGAGATTCGTTTAAATATTTGTGCT............................................................................................................................................................. 25 0 1 13.00 13 12 1 0 0 0
......ATAGCTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 27 0 16 8.94 143 12 131 0 0 0
...........................................................................................................................................................................................AAGGAATAAAAGTCTTGCAGTGGAATT..................................... 27 0 1 7.00 7 7 0 0 0 0
................................................................ACGGTCGAGATTCGTTTAAATATTTGT................................................................................................................................................................ 27 0 1 6.00 6 6 0 0 0 0
............................................................TCACACGGTCGAGATTCGTTTAAATAT.................................................................................................................................................................... 27 0 1 6.00 6 5 1 0 0 0
.............................................................CACACGGTCGAGATTCGTTTAAATAT.................................................................................................................................................................... 26 0 1 6.00 6 4 2 0 0 0
.....................................................................................................................................................................................AACACTAAGGAATAAAAGTCTTGCAGT........................................... 27 0 1 5.00 5 5 0 0 0 0
......................................................................................................................................................................................ACACTAAGGAATAAAAGTCTTGCAGT........................................... 26 0 1 5.00 5 5 0 0 0 0
........................................................................................................................................................................................................CTTGCAGTGGAATTTACGTGGACCA.......................... 25 0 2 4.50 9 9 0 0 0 0
...........................................................................................................................................................................................AAGGAATAAAAGTCTTGCAGTGGAAT...................................... 26 0 1 4.00 4 4 0 0 0 0
...........................................................................TCGTTTAAATATTTGTGCTAGCGAT....................................................................................................................................................... 25 0 2 4.00 8 7 1 0 0 0
.......................................................................................................................................................TAACAAAAGGATTAGTTAAACCTGAT.......................................................................... 26 0 2 3.50 7 7 0 0 0 0
...............................................................................TTAAATATTTGTGCTAGCGATTCCT................................................................................................................................................... 25 0 2 3.50 7 3 4 0 0 0
..................................................................................................................................................................................................AAAAGTCTTGCAGTGGAATTTACGT................................ 25 0 2 3.50 7 7 0 0 0 0
........................................................................................................................................................AACAAAAGGATTAGTTAAACCTGAT.......................................................................... 25 0 2 3.50 7 7 0 0 0 0
........AGCTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 25 0 16 3.06 49 17 32 0 0 0
..............................................................................................................................................................................GATTAAAAACACTAAGGAATAAAAGT................................................... 26 0 1 3.00 3 3 0 0 0 0
.........................................................................................................................................................................................CTAAGGAATAAAAGTCTTGCAGT........................................... 23 0 1 3.00 3 3 0 0 0 0
............................................................TCACACGGTCGAGATTCGTTTAAAT...................................................................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
.....................................................................CGAGATTCGTTTAAATATTTGTGC.............................................................................................................................................................. 24 0 1 3.00 3 2 1 0 0 0
............................................................................................................................................................................................AGGAATAAAAGTCTTGCAGTGGAATT..................................... 26 0 1 3.00 3 3 0 0 0 0
..................................................................GGTCGAGATTCGTTTAAATATTTGT................................................................................................................................................................ 25 0 1 3.00 3 1 2 0 0 0
...........................................................................................GCTAGCGATTCCTACTTAAAGTAAAAGT.................................................................................................................................... 28 0 2 3.00 6 1 5 0 0 0
.................................................................CGGTCGAGATTCGTTTAAATATTTGT................................................................................................................................................................ 26 0 1 3.00 3 3 0 0 0 0
..................TTCATAGCTATTATTTATCGAAGGT................................................................................................................................................................................................................ 25 0 2 3.00 6 5 1 0 0 0
....................................CGAAGGTTATTTAACGTTCGTATCT.............................................................................................................................................................................................. 25 0 2 3.00 6 3 3 0 0 0
.............................................................CACACGGTCGAGATTCGTTTAAAT...................................................................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0
...........................................................CTCACACGGTCGAGATTCGTTTAAATAT.................................................................................................................................................................... 28 0 1 3.00 3 3 0 0 0 0
....................................CGAAGGTTATTTAACGTTCGTATCTCAC........................................................................................................................................................................................... 28 0 2 2.50 5 1 4 0 0 0
.......................................AGGTTATTTAACGTTCGTATCTCACAC......................................................................................................................................................................................... 27 0 2 2.50 5 2 3 0 0 0
.......................................................................................TTGTGCTAGCGATTCCTACTTAAAGT.......................................................................................................................................... 26 0 2 2.50 5 5 0 0 0 0
..................................................CGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 25 0 9 2.22 20 11 9 0 0 0
................................................................ACGGTCGAGATTCGTTTAAATATT................................................................................................................................................................... 24 0 1 2.00 2 2 0 0 0 0
..........................................................................................................TTAAAGTAAAAGTTATTAACACATTCAT..................................................................................................................... 28 0 2 2.00 4 1 3 0 0 0
.............................................................CACACGGTCGAGATTCGTTTAAATATT................................................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0
..............................................................ACACGGTCGAGATTCGTTTAAATAT.................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0
.....................................................................CGAGATTCGTTTAAATATTTGTGCTAGC.......................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0
..............................................................................................AGCGATTCCTACTTAAAGTAAAAGTTAT................................................................................................................................. 28 0 2 2.00 4 1 3 0 0 0
..............................................................ACACGGTCGAGATTCGTTTAAATATT................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0
........................................................................................................................................................................................................CTTGCAGTGGAATTTACGTGGACCAC......................... 26 0 2 2.00 4 3 1 0 0 0
............................................................................................................................................................................................AGGAATAAAAGTCTTGCAGT........................................... 20 0 1 2.00 2 2 0 0 0 0
......................................................................................TTTGTGCTAGCGATTCCTACTTAAAGT.......................................................................................................................................... 27 0 2 2.00 4 4 0 0 0 0
...........................................................................................................................................................................................................................GGACCACCGGTCCAGGTTTCGGCGGT...... 26 0 2 2.00 4 1 3 0 0 0
................................................................ACGGTCGAGATTCGTTTAAATATTTG................................................................................................................................................................. 26 0 1 2.00 2 0 2 0 0 0
....................................CGAAGGTTATTTAACGTTCGTATCTCA............................................................................................................................................................................................ 27 0 2 1.50 3 3 0 0 0 0
............................................................................................................AAAGTAAAAGTTATTAACACATTCAT..................................................................................................................... 26 0 2 1.50 3 1 2 0 0 0
...........................................................................TCGTTTAAATATTTGTGCTAGCGATT...................................................................................................................................................... 26 0 2 1.50 3 0 3 0 0 0
..................TTCATAGCTATTATTTATCGAAGGTT............................................................................................................................................................................................................... 26 0 2 1.50 3 2 1 0 0 0
............................................................................CGTTTAAATATTTGTGCTAGCGATTCCT................................................................................................................................................... 28 0 2 1.50 3 2 1 0 0 0
........................................................................................................ACTTAAAGTAAAAGTTATTAACACAT......................................................................................................................... 26 0 2 1.50 3 1 2 0 0 0
...............................................................................................GCGATTCCTACTTAAAGTAAAAGTTAT................................................................................................................................. 27 0 2 1.50 3 1 2 0 0 0
...............................................TAACGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 28 0 9 1.33 12 2 10 0 0 0
.................................................TCGTTCGTATCTCAAACGGTCGAGAT................................................................................................................................................................................ 26 2 9 1.33 12 12 0 0 0 0
..................................................CGTTCGTATCTCAAACGGTCGAGAT................................................................................................................................................................................ 25 1 9 1.22 11 8 3 0 0 0
.......TAGCTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 26 0 16 1.13 18 0 18 0 0 0
...........................................TATTTAACGTTCGTATCTCACACGGT...................................................................................................................................................................................... 26 0 10 1.10 11 0 11 0 0 0
...............................................................CACGGTCGAGATTCGTTTAAATATTTG................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
......................................................CGTATCTCACACGGTCGAGATTCGTT........................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................TAAACCTGATTAAAAACACTAAGGAATC........................................................ 28 1 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................................................TCTTGCAGTGGAATTTACGTGGACCA.......................... 26 0 2 1.00 2 2 0 0 0 0
............................................................................................................................................CAAAAAAAAAATAACAAAAGGATTAGTT................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................AATAACAAAAGGATTAGTTAAACCTGAT.......................................................................... 28 0 2 1.00 2 2 0 0 0 0
............................................................................................................................................................................................AGGAATAAAAGTCTTGCAGTGGAATTT.................................... 27 0 1 1.00 1 1 0 0 0 0
............................................................TCACACGGCCGAGATTCGTTTAAATAT.................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................................................................................GAATAAAAGTCTTGCAGTGGAATTT.................................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................CGGTCGAGATTCGTTTAAAT...................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................AAGGAATAAAAGTCTTGCAGCGGAATT..................................... 27 1 1 1.00 1 1 0 0 0 0
..................................................................GGTCGAGATTCGTTTAAATATTTGTGC.............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
.............................................................................................TAGCGATTCCTACTTAAAGTAAAAGT.................................................................................................................................... 26 0 2 1.00 2 0 2 0 0 0
....................................................................................................................................................................................AAACACTAAGGAATAAAAGTCTTGCAGT........................................... 28 0 1 1.00 1 1 0 0 0 0
...................TCATAGCTATTATTTATCGAAGGTTAT............................................................................................................................................................................................................. 27 0 2 1.00 2 2 0 0 0 0
............................................................................................................................................................................................AGGAATAAAAGTCTTGCAGGGGAATT..................................... 26 1 1 1.00 1 1 0 0 0 0
...............................................................CACGGTCGAGATTCGTTTAAATATT................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................AAGGAATAAAATTCTTGCAGTGGAATT..................................... 27 1 1 1.00 1 1 0 0 0 0
...........................................................................................................................................................................................AAGGAATAAAAGTCTTGCAGT........................................... 21 0 1 1.00 1 1 0 0 0 0
........................................GGTTATTTAACGTTCGTATCTCACAC......................................................................................................................................................................................... 26 0 2 1.00 2 1 1 0 0 0
......................................................................................................................................................................................................GTCTTGCAGTGGAATTTACGTGGAC............................ 25 0 2 1.00 2 1 1 0 0 0
.................................................ACGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 26 0 9 1.00 9 1 8 0 0 0
..........................................................................................................................................................................................TAAGGAATAAAAGTCTTGCAGTGGAAT...................................... 27 0 1 1.00 1 0 1 0 0 0
............................................................................................................................................................................CTGATTAAAAACACTAAGGAATAAAAGT................................................... 28 0 1 1.00 1 1 0 0 0 0
...............................................................................TTAAATATTTGTGCTAGCGATTCCTACT................................................................................................................................................ 28 0 2 1.00 2 0 2 0 0 0
..................TTCATAGCTATTATTTATCGAAGGTTATT............................................................................................................................................................................................................ 29 0 2 1.00 2 1 1 0 0 0
......................................................CGTATCTCACACGGTCGAGATTCGTTT.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
......ATAGCTATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 26 0 16 0.94 15 1 14 0 0 0
.........GCTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 24 0 16 0.81 13 1 12 0 0 0
...........TATAGGTTTCATAGCTATTATTTAT....................................................................................................................................................................................................................... 25 0 14 0.79 11 7 3 0 0 1
...................................................GTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 24 0 9 0.78 7 1 6 0 0 0
..................................................CGTTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 26 0 9 0.56 5 2 3 0 0 0
.....................................GAAGGTTCTTTAACGTTCGTATCTCA............................................................................................................................................................................................ 26 1 2 0.50 1 1 0 0 0 0
...........................................................................................................................................................................................................................GGACCACCGGTCCAGGTTTCGGCTGT...... 26 1 2 0.50 1 1 0 0 0 0
........................................................................................TGTGCTAGCGATTCCTACTTAAAGT.......................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0
............................................................................CGTTTAAATATTTGTGCTATCGATT...................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
............................................................................................................AAAGTAAAAGTTATGAACACATTCAT..................................................................................................................... 26 1 2 0.50 1 0 1 0 0 0
........................................................................................................................................................AACAAAAGGATTAGTTAAACCTGATT......................................................................... 26 0 2 0.50 1 1 0 0 0 0
...............................................................................TTAAATATTTGTGCTAGCGATT...................................................................................................................................................... 22 0 2 0.50 1 0 1 0 0 0
...........................................................................................................................................................................................................................GGACCACCGGTCCAGGTTTCGGCGGTTT.... 28 0 2 0.50 1 0 1 0 0 0
..............................................................................................AGCGATTCCTACTTAAAGTAAAAGTTA.................................................................................................................................. 27 0 2 0.50 1 0 1 0 0 0
..................................................................................................................................................AAAAATAACAAAAGGATTAGTTAAAC............................................................................... 26 0 2 0.50 1 1 0 0 0 0
........................................................................................................................................................................................................CTTGCAGTGGAATTTACGTGGA............................. 22 0 2 0.50 1 1 0 0 0 0
.........................CTATTATTTATCGAAGGTTATT............................................................................................................................................................................................................ 22 0 2 0.50 1 1 0 0 0 0
..................TTCATAGCTATTATTTATCGAAGGTTA.............................................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0
...........................................................................TCGTTTAAATATTTGTGCTACCGAT....................................................................................................................................................... 25 1 2 0.50 1 1 0 0 0 0
............................TTATTTATCGAAGGTTATTTAACGT...................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................ATAAAAGTCTTGCAGTGGAATT..................................... 22 0 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................................TGCAGTGGAATTTACGTGGACCA.......................... 23 0 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................GTAATAAAAGTCTTGCAGTGGAAT...................................... 24 1 2 0.50 1 1 0 0 0 0
..................TTCATAGCTATTATTTATCGAAGTTTAT............................................................................................................................................................................................................. 28 1 2 0.50 1 1 0 0 0 0
...................................................................................................TTCCTACTTAAAGTAAAAGTTAT................................................................................................................................. 23 0 2 0.50 1 0 1 0 0 0
.........................................................................................................................................................................................................TTGCAGTGGAATTTACGTGGACCAC......................... 25 0 2 0.50 1 1 0 0 0 0
...........................................................................................GCTAGCGATTCCTACTTAAAGTAAAAG..................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
..............................................................................................AGCTATTCCTACTTAAAGTAAAAGTTAT................................................................................................................................. 28 1 2 0.50 1 0 1 0 0 0
..........................................................................................................TTAAAGTAAAAGTTATTAACACATTC....................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
.......................AGCTATTATTTATCGAAGGTTATT............................................................................................................................................................................................................ 24 0 2 0.50 1 0 1 0 0 0
...................................TCGAAGGTTATTTAACGTTCGTATCT.............................................................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0
..................................................................................................................................................................................................................................CGGTCCAGGTTTCGGCGGTTT.... 21 0 2 0.50 1 1 0 0 0 0
.....................................GAAGGTTATTTAACGTTCGTATCTCA............................................................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0 0
...................................................................................................TTCCTACTTAAAGTAAAAGTTATT................................................................................................................................ 24 0 2 0.50 1 0 1 0 0 0
................................................................................................................................................................................................AAAAAAGTCTTGCAGTGGAAT...................................... 21 1 2 0.50 1 1 0 0 0 0
..............................................................................................................................................................................................................................CCACCGGTCCAGGTTTCGGCGGTTT.... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................................................................TAACAAAAGGATTAGTTAAACCTGATT......................................................................... 27 0 2 0.50 1 0 1 0 0 0
.....................................GAAGGTTATTTAACGTTCGTATCT.............................................................................................................................................................................................. 24 0 2 0.50 1 1 0 0 0 0
................................................................................TAAATATTTGTGCTAGCGATTCCTACTT............................................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0
.......................................AGGTTATTTAACGTTCGTATCTCACA.......................................................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................................AAAATAACAAAAGGATTAGTTAAACCT............................................................................. 27 0 2 0.50 1 1 0 0 0 0
.....................................GAAGGTTATTTAACGTTCGTATCTCACAC......................................................................................................................................................................................... 29 0 2 0.50 1 0 1 0 0 0
........................................................................................................................................................................................................CTTGCAGTGGAATTTACGTGGACC........................... 24 0 2 0.50 1 1 0 0 0 0
......................................AAGGTTATTTAACGTTCGTATCTCACAC......................................................................................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0
AATTATATAGCTATAGGTTTCAT.................................................................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0 0
......................................................................GAGATTCGTTTAAATATTTGTGCTAGC.......................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
....................................................................................................................................................................................................AAGTCTTGCAGTGGAATTTACGTGG.............................. 25 0 2 0.50 1 0 1 0 0 0
...........................................................................................................................................................................................................................GGACCACCGGTCCAGGTTTCGGCGGTT..... 27 0 2 0.50 1 0 1 0 0 0
..........................................TTATTTAACGTTCGTATCTCACACGGT...................................................................................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
...........................................................................................................TAAAGTAAAAGCTATTAACACATTCAT..................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0
................................................................................................................................................................................................................GGAATTTACGTGGACCACCGGTCCAGGT............... 28 0 2 0.50 1 0 1 0 0 0
.................................................................................................................................................................................................TAAAAGTCTTGCAGTGGAATTTACGT................................ 26 0 2 0.50 1 0 1 0 0 0
...........................ATTATTTATCGAAGGTTATTTAACGT...................................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
....................................................................................................TCCTACTTAAAGTAAAAGTTATTAACAC........................................................................................................................... 28 0 2 0.50 1 0 1 0 0 0
........................................................................................TGTGCTAGCGATTCCTACTTAAAGTAA........................................................................................................................................ 27 0 2 0.50 1 0 1 0 0 0
........................................................................................................................................................................................................CTTGCAGCGGAATTTACGTGGACCA.......................... 25 1 2 0.50 1 1 0 0 0 0
.............................................................................................................................................................................................................................ACCACCGGTCCAGGTTTCGGCGGT...... 24 0 2 0.50 1 0 1 0 0 0
...............................................................................................................................................................................................AATAAAAGTCTTGCAGTGGAATTTACGT................................ 28 0 2 0.50 1 1 0 0 0 0
..................TTCATAGCTATTATTTATCGCAGGTTAT............................................................................................................................................................................................................. 28 1 2 0.50 1 1 0 0 0 0
......................................AAGGTTATTTAACGTTCGTATCTCAC........................................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0 0
...............................................................................................................................................AAAAAAAATAACAAAAGGATTAGTTAAA................................................................................ 28 0 2 0.50 1 1 0 0 0 0
.......................................AGGTTATTTAACGTTCGTATCTCAC........................................................................................................................................................................................... 25 0 2 0.50 1 0 1 0 0 0
.....................................................................................ATTTGTGCTAGCGATTCCTACTTAAAGT.......................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0
....ATATAGCTATAGGTTTCAT.................................................................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0 0
.........................................................................................GTGCTAGCGATTCCTACTTAAAGT.......................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...............................................................................TTAAATATTTGTGCTAGCGATTCC.................................................................................................................................................... 24 0 2 0.50 1 0 0 1 0 0
................................................................................................................................................................................................................................TCCGGTCCAGGTTTCGGCGGTTTTAA. 26 1 2 0.50 1 0 1 0 0 0
...................TCATAGCTATTATTTATCGAAGGTT............................................................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0
.......................................................................................................TACTTAAAGTAAAAGTTATTAACACAT......................................................................................................................... 27 0 2 0.50 1 0 1 0 0 0
...............................................................................TTAAATATTTGTGCTAGCGGTTCCTACTT............................................................................................................................................... 29 1 2 0.50 1 0 1 0 0 0
..........................................................................................................................................................................................................................TGGACCACCGGTCCAGGTTTCGGCGGT...... 27 0 2 0.50 1 1 0 0 0 0
......................................................................................................................................................ATAACAAAAGGATTAGTTAAACCTGAT.......................................................................... 27 0 2 0.50 1 0 1 0 0 0
..................................................................................................................................................................................................AAAAGTCTTGCAGTGGAATTTACG................................. 24 0 2 0.50 1 0 1 0 0 0
.................................................................................................GATTCCTACTTAAAGTAAAAGTTAT................................................................................................................................. 25 0 2 0.50 1 0 1 0 0 0
.............................................................CACACGGTCGAGATTCGTTTAAGAT..................................................................................................................................................................... 25 3 2 0.50 1 0 1 0 0 0
..............................................TTAACGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 29 0 9 0.44 4 0 4 0 0 0
...................................................GTTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 25 0 9 0.44 4 0 4 0 0 0
.................................................ACGTTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 27 0 9 0.44 4 0 4 0 0 0
...........................................TATTTAACGTTCGTATCTCACACGG....................................................................................................................................................................................... 25 0 10 0.40 4 0 4 0 0 0
............................................ATTTAACGTTCGTATCTCACACGGT...................................................................................................................................................................................... 25 0 10 0.40 4 0 4 0 0 0
......ATAACTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 27 1 16 0.38 6 0 6 0 0 0
.................TTCATTAGCTATTATTTATCGAAGGTTAT............................................................................................................................................................................................................. 29 3 3 0.33 1 1 0 0 0 0
................................................AACGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 27 0 9 0.33 3 0 3 0 0 0
.....................................................................................................................................................................................................................TTACGTGGACCACCGGTCCAGGTTT............. 25 0 3 0.33 1 0 1 0 0 0
..................................................CGTTCGTATCTCAAACGGTCGAGATT............................................................................................................................................................................... 26 1 9 0.33 3 0 3 0 0 0
......................................................CGTATCTCACACGGTCGAGATTCGT............................................................................................................................................................................ 25 0 10 0.30 3 3 0 0 0 0
............ATAGGTTTCATAGCTATTATTTAT....................................................................................................................................................................................................................... 24 0 14 0.29 4 1 3 0 0 0
.................................................................................................................AAAAGTTATTAACACATTCATAAAAACC.............................................................................................................. 28 0 4 0.25 1 0 1 0 0 0
...................................................GTTCGTATCTCACACGGTCGAGA................................................................................................................................................................................. 23 0 9 0.22 2 0 2 0 0 0
................................................AACGTTCGTATCTCACACGGTCGAGA................................................................................................................................................................................. 26 0 9 0.22 2 0 2 0 0 0
...............................................TAACGTTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 29 0 9 0.22 2 0 2 0 0 0
.....................................................TCGTATCTCACACGGTCGAGATTCGT............................................................................................................................................................................ 26 0 9 0.22 2 1 1 0 0 0
.........GCTATAGGTTTCATAGCTATTATTTAT....................................................................................................................................................................................................................... 27 0 14 0.21 3 1 2 0 0 0
......ATAGCTATAGGTTTCATAGCTATTATTT......................................................................................................................................................................................................................... 28 0 14 0.21 3 0 3 0 0 0
.....................................................TCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 22 0 10 0.20 2 1 1 0 0 0
....................................................TTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 23 0 10 0.20 2 0 2 0 0 0
....................................................TTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 24 0 10 0.20 2 0 2 0 0 0
.......................................................GTATCTCACACGGTCGAGATTCGT............................................................................................................................................................................ 24 0 10 0.20 2 1 0 0 1 0
.......TAGCTATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 25 0 16 0.19 3 0 3 0 0 0
........AGCTATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 24 0 16 0.19 3 0 3 0 0 0
...................................................................................................................AAGTTATTAACACATTCATAA................................................................................................................... 21 0 6 0.17 1 0 1 0 0 0
.....TATAGCTATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 28 0 15 0.13 2 0 2 0 0 0
...................................................GTTCGTATCTCACACGGTCGAGATTCGT............................................................................................................................................................................ 28 0 8 0.13 1 0 1 0 0 0
.................................................ACGTTCGTATCTCACACGGTCGAGATTC.............................................................................................................................................................................. 28 0 8 0.13 1 0 1 0 0 0
.......................................................................................................................TATTAACACATTCATAAAAACCAAA........................................................................................................... 25 0 8 0.13 1 0 1 0 0 0
.......................................................................................................................TATTAACACATTCATAAAAACCAA............................................................................................................ 24 0 8 0.13 1 0 1 0 0 0
.......................................................................................................................TATTAACACATTCATAAAAACCAAAAA......................................................................................................... 27 0 8 0.13 1 0 1 0 0 0
...................................................GTTCGTATCTCACACGGTCGAGATTCG............................................................................................................................................................................. 27 0 8 0.13 1 0 1 0 0 0
.............TAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 20 0 16 0.13 2 2 0 0 0 0
.......................................................................................................................TATTAACACATTCATAAAAACCAAAA.......................................................................................................... 26 0 8 0.13 1 0 1 0 0 0
.........GCTATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 23 0 16 0.13 2 0 2 0 0 0
...............................................GTACGTTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 28 2 9 0.11 1 0 1 0 0 0
................................................AACGCTCGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 27 1 9 0.11 1 0 1 0 0 0
..................................................CGTTCGTATCTCACACGGTCGAGA................................................................................................................................................................................. 24 0 9 0.11 1 0 1 0 0 0
..............................................TTAACGTTCGTATCTCACACGGTCGAGA................................................................................................................................................................................. 28 0 9 0.11 1 0 1 0 0 0
...................................................GTTCGTATCTCACGCGGTCGAGATT............................................................................................................................................................................... 25 1 9 0.11 1 0 1 0 0 0
.................................................TCGTTCGTATCTCAAACGGTCGAGA................................................................................................................................................................................. 25 2 9 0.11 1 0 1 0 0 0
...................................................GTTCGTATCTCACTCGGTCGAGATT............................................................................................................................................................................... 25 1 9 0.11 1 1 0 0 0 0
................................................CACGTTCGTATCTCACACGGTCGAGATT............................................................................................................................................................................... 28 1 9 0.11 1 0 1 0 0 0
...............................................TAACGTTCGTATCTCACGCGGTCGAGATT............................................................................................................................................................................... 29 1 9 0.11 1 0 1 0 0 0
.................................................TCGTTCGTATCTCAAACGGTCGAGATT............................................................................................................................................................................... 27 2 9 0.11 1 1 0 0 0 0
...............................................TAACGTTCGTATCTCACACGTTCGAGAT................................................................................................................................................................................ 28 1 9 0.11 1 0 1 0 0 0
......................................................CGTATCTCACACGGTCGAGATTCG............................................................................................................................................................................. 24 0 10 0.10 1 0 1 0 0 0
...............................................TAACGTTCGTATCTCACACGGT...................................................................................................................................................................................... 22 0 10 0.10 1 0 1 0 0 0
..................................................CGTTCGTATCTCAAACGGTCGAGCT................................................................................................................................................................................ 25 2 10 0.10 1 1 0 0 0 0
.....................................................TCGTATCTCAAACGGTCGAGAT................................................................................................................................................................................ 22 1 10 0.10 1 0 1 0 0 0
....................................................................................................................................................CAATAACAAAAGGGTTAGTTC.................................................................................. 21 3 10 0.10 1 0 0 0 1 0
...........................................TATTTAACGTTCGTATCTCACACG........................................................................................................................................................................................ 24 0 10 0.10 1 0 1 0 0 0
......................................................CGTATCTCACACGGTCGAGAT................................................................................................................................................................................ 21 0 11 0.09 1 0 1 0 0 0
.......................................................GTATCTCACACGGTCGAGAT................................................................................................................................................................................ 20 0 11 0.09 1 0 1 0 0 0
........AACTATAGGTTTCATAGCTATTATTT......................................................................................................................................................................................................................... 26 1 14 0.07 1 0 1 0 0 0
........AGCTATAGGTTTCATAGCTATTATTTA........................................................................................................................................................................................................................ 27 0 14 0.07 1 0 1 0 0 0
............ATAGGTTTCATAGCTATTATTTATCGA.................................................................................................................................................................................................................... 27 0 14 0.07 1 1 0 0 0 0
..........ATATAGGTTTCATAGCTATTATTTAT....................................................................................................................................................................................................................... 26 1 14 0.07 1 0 1 0 0 0
........AGCTATAGGTTTCATAGCTATTATTT......................................................................................................................................................................................................................... 26 0 14 0.07 1 1 0 0 0 0
............ATAGGTTTCATAGCTATTATTT......................................................................................................................................................................................................................... 22 0 14 0.07 1 0 1 0 0 0
.............TTGGTTCCATAGCTATTATTTATCG..................................................................................................................................................................................................................... 25 2 14 0.07 1 0 1 0 0 0
..............AGGTTTCATAGCTATTATTTATCG..................................................................................................................................................................................................................... 24 0 14 0.07 1 1 0 0 0 0
..................TTCATAGCTATTATTTATC...................................................................................................................................................................................................................... 19 0 15 0.07 1 0 1 0 0 0
...........TATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 22 0 16 0.06 1 0 1 0 0 0
.............AAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 20 1 16 0.06 1 1 0 0 0 0
............ATAGGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 21 0 16 0.06 1 1 0 0 0 0
......ATAGCTATAGGTTTCATAGCTATTATTG......................................................................................................................................................................................................................... 28 1 16 0.06 1 0 1 0 0 0
........AGCTATAGGTTTCATAGTTATTATT.......................................................................................................................................................................................................................... 25 1 16 0.06 1 0 1 0 0 0
......AAAGCTATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 26 1 16 0.06 1 0 1 0 0 0
......ATAGCTATAGGTTTCATAGCTATAAT........................................................................................................................................................................................................................... 26 1 16 0.06 1 0 1 0 0 0
............ATAGGTTTCATAGCTATTAT........................................................................................................................................................................................................................... 20 0 16 0.06 1 0 1 0 0 0
......ATAGCTATAGGTTTCATAACTATTATT.......................................................................................................................................................................................................................... 27 1 17 0.06 1 0 1 0 0 0
...............GGTTTCATAGCTATTATT.......................................................................................................................................................................................................................... 18 0 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004423:36507-36757 + dwi_382 TTAATATATCGATATCCAAAGTATCGATAATAAATAGCTTCCAATAAATTGCAAGCATAGAGTGTGCCAGCTCTAAGCAAATTTATAAACACGATCGCTAAGGATGAATTTCATTTTCAATAATTGTGTAAGTATTTTTGGTTTTTTTTTTATTGTTTTCCTAATCAATTTGGACTAATTTTTGTGATTCCTTATTTTCAGAACGTCACCTTAAATGCACCTGGTGGCCAGGTCCAAAGCCGCCAAAATTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTAATATATCGATATCCAAAGTATCGATAATAAATAGCTTCCAATAAATTGCAAGCATAGAGTGTGCCAGCTCTAAGCAAATTTATAAACACGATCGCTAAGGATGAATTTCATTTTCAATAATTGTGTAAGTATTTTTGGTTTTTTTTTTATTGTTTTCCTAATCAATTTGGACTAATTTTTGTGATTCCTTATTTTCAGAACGTCACCTTAAATGCACCTGGTGGCCAGGTCCAAAGCCGCCAAAATTCSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
......................................................................................................................................................................................................CAGAACGTCACCTTAAATGCACCTGG...........................2621.00201010
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGCACC..............................2621.00202000
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGC.................................2321.00202000
.................................................TGCAAGCATAGAGTGTGCCAGCTCT.................................................................................................................................................................................2590.78700070
.......................TCGATAATAAATAGCTTCCAAT..............................................................................................................................................................................................................2220.50101000
.................................................................................TTTATAAACACGATCGCTAAGG....................................................................................................................................................2220.50101000
................................................................................................................ATTTTCAATAATTGTGTAAGTATT...................................................................................................................2420.50101000
......................................TTCCAATAAATTGCAAGCATA................................................................................................................................................................................................2120.50101000
.................................................................................TTTATAAACACGATCGCTAAGGATG.................................................................................................................................................2520.50100010
....................................................................................................................................................................................................TTCAGAACGTCACCTTAAATGCA................................2320.50101000
...................................................................................................................................................................................................TTTCAGAACGTCACCTTAAATGCACCTG............................2820.50101000
...................................................................................TATAAACACGATCGCTAAGGATGAATT.............................................................................................................................................2720.50101000
...................................................................................TATAAACACGATCGCTAAGG....................................................................................................................................................2020.50100010
.................................................TGCAAGCATAGAGTGTGCCAGCTC..................................................................................................................................................................................2490.33303000
.................................................TGCAAGCATAGAGTGTGCCAGCTCTAAG..............................................................................................................................................................................2880.13100010
...................................................CAAGCATAGAGTGTGCCAGCTCTAAG..............................................................................................................................................................................2680.13100010
........................................................................................................................TAATTGTGTAAGTATTTTTGGTTT...........................................................................................................2480.13100010
.................................................TGCAAGCATAGAGTGTGCCAGCTCTA................................................................................................................................................................................2690.11101000
.................................................TGCAAGCATAGAGTGTGCCAGC....................................................................................................................................................................................2290.11101000
....................................................AAGCATAGAGTGTGCCAGCTCTAAG..............................................................................................................................................................................2590.11100010
..........................................................................................................................ATTGTGTAAGTATTTTTGGTT............................................................................................................2190.11100010
.................................................TGCAAGCATAGAGTGTGCCAGT....................................................................................................................................................................................2290.11100010
..............................................AATTGCAAGCATAGAGTGTG.........................................................................................................................................................................................20100.10101000
.........................................................TAGAGTGTGCCAGCTCTAAG..............................................................................................................................................................................20100.10101000
.............................................AAATTGCAAGCATAGAGTGTG.........................................................................................................................................................................................21100.10101000
...........................................................................................................................TTGTGTAAGTATTTTTGGTTT...........................................................................................................21110.09100010
...........................................ATAAATTGCAAGCATAGAGTG...........................................................................................................................................................................................21120.08101000
.............ATCCAAAGTATCGATAATAAATAGC.....................................................................................................................................................................................................................25140.07100010
.............ATCCAAAGTATCGATAATAAATAGCT....................................................................................................................................................................................................................26140.07101000

Generated: 05/17/2015 at 11:00 PM