ID:

dwi_3792

Coordinate:

scf2_1100000004954:5081006-5081102 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-13.7 -13.5 -12.9 -12.9

Flybase annnotation

intron [Dwil\GK23333-in]; exon [dwil_GLEANR_6653:2]; CDS [Dwil\GK23333-cds]; exon [dwil_GLEANR_6653:1]; CDS [Dwil\GK23333-cds]; intron [Dwil\GK23333-in]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------#################################################-
TTTAATGGCTTACGTTTGCGATGGATGCAGCGTAAACATGAAGTTTAGAAGTGAGTACAAGGGCAAAGTCCGCATTGTTTGGGACTACCAGCACATCGCGAAAGTCTGCATAAGAACACACTCTCCAAATAACACATCATTCTCAAGGGCATCTGAATGTCCTAAGAATTTATCAAAATAGTTTTCAAGGTCAACGG
***************************************************((.......(((((.....(((..(((((((.....)))).)))..)))......)))...............))......))***************************************************************
Read size # Mismatch Hit Count Total Norm Total M045
female body
V118
embryo
V117
male body
...................GATGGATGCAGCGTAAACATGAAGTT........................................................................................................................................................ 26 0 1 3.00 3 0 0 3
..TAATGGCTTACGTTTGCGATGGATGC......................................................................................................................................................................... 26 0 1 2.00 2 0 2 0
..........................................................................................................TGCATAAGAACACACTCTCCAAATAACA............................................................... 28 0 1 2.00 2 2 0 0
.........................................................................................................CTGCATAAGAACACACTCTCCAAA.................................................................... 24 0 1 1.00 1 1 0 0
..TAATGGCTTACGTTTGCGATGGA............................................................................................................................................................................ 23 0 1 1.00 1 1 0 0
..........................................................................................................................................................................TATCAAAATAGTTTTCAAGGTCAACGG 27 0 1 1.00 1 1 0 0
...............................................GAAGTGAGTACAAGGGCAAAGTCCG............................................................................................................................. 25 0 1 1.00 1 1 0 0
........................ATGCAGCGTAAACATGAAGTTTAGA.................................................................................................................................................... 25 0 1 1.00 1 0 1 0
.........................TGCAGCGTAAACATGAAGTTTAGAAG.................................................................................................................................................. 26 0 1 1.00 1 0 1 0
.............................................................................TTTGGGACTACCAGCACATCGCGAAAG............................................................................................. 27 0 1 1.00 1 0 1 0
...................GATGGATGCAGCGTAAACATGAAG.......................................................................................................................................................... 24 0 1 1.00 1 1 0 0
............................AGCGTAAACATGAAGTTTAGAAG.................................................................................................................................................. 23 0 1 1.00 1 0 1 0
.................................................................................................................................TAACACATCATTCTCAAGGGCAT............................................. 23 0 1 1.00 1 1 0 0
........................ATGCAGCGTAAACATGAAGTTTAGAAG.................................................................................................................................................. 27 0 1 1.00 1 0 1 0
.......................................................................................................................................ATCATTCTCAAGGGCATCTGAATG...................................... 24 0 1 1.00 1 1 0 0
............................................................................................ACATCGCGAAAGTCTGCATAAGA.................................................................................. 23 0 1 1.00 1 0 0 1
.......................................................................................................GTCTGCATAAGAACACACTCTC........................................................................ 22 0 1 1.00 1 1 0 0
...................................................TGAGTACAAGGGCAAAGTCCGCATTGTT...................................................................................................................... 28 0 1 1.00 1 1 0 0
................................................................................................CGCGAAAGTCTGCATAAGAACACACTC.......................................................................... 27 0 1 1.00 1 1 0 0
.................................................................................................................................TAACACATCATTCTCAAGGGCATCTG.......................................... 26 0 1 1.00 1 1 0 0
........................................................................................................TCTGCATAAGAACACACTCTCCAA..................................................................... 24 0 1 1.00 1 1 0 0
................................TAAACATGAAGTTTAGAAGTGAG.............................................................................................................................................. 23 0 1 1.00 1 1 0 0
...........................................................................................CACATCGCGAAAGTCTGCATAAGA.................................................................................. 24 0 1 1.00 1 1 0 0
...................GATGGATGCAGCGTAAACATGAAGT......................................................................................................................................................... 25 0 1 1.00 1 0 1 0
.......................................................TACAAGGGCAAAGTCCGCATTG........................................................................................................................ 22 0 1 1.00 1 0 1 0
........................................................................................................................................TCATTCTCAAGGGCATCTGAATGTC.................................... 25 0 1 1.00 1 0 1 0
...............TTGCGATGGATGCAGCGTAAAC................................................................................................................................................................ 22 0 3 0.67 2 1 1 0
................TGCGATGGATGCAGCGTAAACATGA............................................................................................................................................................ 25 0 2 0.50 1 0 0 1
..................CGATGGATGCAGCGTAAACAT.............................................................................................................................................................. 21 0 2 0.50 1 0 1 0
................TGCGATGGATGCAGCGTAAACAT.............................................................................................................................................................. 23 0 2 0.50 1 0 0 1
...................TATGGATGCAGCGTAAACATG............................................................................................................................................................. 21 1 2 0.50 1 0 1 0
...............................................................................................................................................CAAGGGAATCTGACTGTC.................................... 18 2 6 0.33 2 2 0 0
...........ACGTTTGCGATGGATGCAGCGTAAACA............................................................................................................................................................... 27 0 3 0.33 1 0 1 0
...............................................................................................................................................CAAGGGGATCTGACTGTC.................................... 18 2 5 0.20 1 1 0 0
........CTTACGTTTGCGATGGATGCAGC...................................................................................................................................................................... 23 0 8 0.13 1 0 1 0
.........TTACGTTTGCGATGGATGCAG....................................................................................................................................................................... 21 0 9 0.11 1 0 1 0
...........ACGTTTGCGATGGATGCAGCG..................................................................................................................................................................... 21 0 9 0.11 1 0 0 1
.........TTACGTTTGCGATGGATGCAGC...................................................................................................................................................................... 22 0 9 0.11 1 1 0 0
..........TACGTTTGCGATGGATGCAG....................................................................................................................................................................... 20 0 9 0.11 1 1 0 0
..........TACGTTTGCGATGGATGC......................................................................................................................................................................... 18 0 10 0.10 1 1 0 0
..........TACGTTTGCGATGGATGTT........................................................................................................................................................................ 19 2 11 0.09 1 0 1 0

Anti-sense strand reads

AAATTACCGAATGCAAACGCTACCTACGTCGCATTTGTACTTCAAATCTTCACTCATGTTCCCGTTTCAGGCGTAACAAACCCTGATGGTCGTGTAGCGCTTTCAGACGTATTCTTGTGTGAGAGGTTTATTGTGTAGTAAGAGTTCCCGTAGACTTACAGGATTCTTAAATAGTTTTATCAAAAGTTCCAGTTGCC
***************************************************************((.......(((((.....(((..(((((((.....)))).)))..)))......)))...............))......))***************************************************
Read size # Mismatch Hit Count Total Norm Total M045
female body
V118
embryo
V117
male body
V119
head
M020
head
............GCAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 26 0 3 31.33 94 93 1 0 0 0
.........................................................GTTCCCGTTTCAGGCGTAACAAACCCT................................................................................................................. 27 0 1 29.00 29 29 0 0 0 0
...............................................................................................................................TTATTGTGTAGTAAGAGTTCCCGT.............................................. 24 0 1 18.00 18 0 15 3 0 0
.............................................................................................GTAGCGCTTTCAGACGTATTCTTGT............................................................................... 25 0 1 14.00 14 11 3 0 0 0
...................................................................................................................................TGTGTAGTAAGAGTTCCCGTAGACTT........................................ 26 0 1 13.00 13 3 6 4 0 0
...................................................................................................................TGTGTGAGAGGTTTATTGTGTAGT.......................................................... 24 0 1 11.00 11 6 2 3 0 0
.......................................................................................................................................................AGACTTACAGGATTCTTAAATAGT...................... 24 0 1 11.00 11 10 1 0 0 0
..........................................................................................CGTGTAGCGCTTTCAGACGTATTCTTGT............................................................................... 28 0 1 9.00 9 9 0 0 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGGTT..................................................................... 26 0 1 9.00 9 1 6 2 0 0
.......................................................................................................................................................AGACTTACAGGATTCTTAAATAGTTT.................... 26 0 1 9.00 9 8 0 0 0 1
.......................................................................................GGTCGTGTAGCGCTTTCAGACGTAT..................................................................................... 25 0 1 9.00 9 6 2 1 0 0
...........................................................TCCCGTTTCAGGCGTAACAAACCCT................................................................................................................. 25 0 1 8.00 8 8 0 0 0 0
.............................CGCATTTGTACTTCAAATCTTCACTCAT............................................................................................................................................ 28 0 1 7.00 7 7 0 0 0 0
..................................TTGTACTTCAAATCTTCACTCATGT.......................................................................................................................................... 25 0 1 7.00 7 7 0 0 0 0
....................................................................................GATGGTCGTGTAGCGCTTTCAGACGT....................................................................................... 26 0 1 7.00 7 5 2 0 0 0
......................................................................................................................GTGAGAGGTTTATTGTGTAGTAAGAGT.................................................... 27 0 1 7.00 7 4 2 1 0 0
.......CGAATGCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 28 0 8 6.13 49 49 0 0 0 0
...............................................CTTCACTCATGTTCCCGTTTCAGGCGT........................................................................................................................... 27 0 1 6.00 6 6 0 0 0 0
.................................................................................................................CTTGTGTGAGAGGTTTATTGTGTAGT.......................................................... 26 0 1 6.00 6 0 2 4 0 0
.............................................................................................GTAGCGCTTTCAGACGTATTCTTGTGT............................................................................. 27 0 1 5.00 5 3 1 1 0 0
.................................................................................................................................................TCCCGTAGACTTACAGGATTCTTAAAT......................... 27 0 1 5.00 5 5 0 0 0 0
.......................................................................................................................TGAGAGGTTTATTGTGTAGTAAGAGT.................................................... 26 0 1 5.00 5 4 1 0 0 0
.......................................................................................................................................................AGACTTACAGGATTCTTAAATAGTT..................... 25 0 1 5.00 5 5 0 0 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGGT...................................................................... 25 0 1 4.00 4 1 3 0 0 0
..........................................................................................CGTGTAGCGCTTTCAGACGTATTCT.................................................................................. 25 0 1 4.00 4 4 0 0 0 0
......................................ACTTCAAATCTTCACTCATGTTCCCGT.................................................................................................................................... 27 0 1 4.00 4 4 0 0 0 0
............................................................................................TGTAGCGCTTTCAGACGTATTCTTGT............................................................................... 26 0 1 4.00 4 2 2 0 0 0
..........................................................................................CGTGTAGCGCTTTCAGACGTATTCTT................................................................................. 26 0 1 4.00 4 2 2 0 0 0
.....................................................................................ATGGTCGTGTAGCGCTTTCAGACGT....................................................................................... 25 0 1 4.00 4 4 0 0 0 0
................................................................................................................TCTTGTGTGAGAGGTTTATTGTGTAGT.......................................................... 27 0 1 4.00 4 1 0 2 1 0
.......CGAATGCAAACGCTACCTACGTCGCAT................................................................................................................................................................... 27 0 8 3.75 30 30 0 0 0 0
................ACGCTACCTACGTCGCATTTGTACT............................................................................................................................................................ 25 0 2 3.50 7 7 0 0 0 0
.......................................................................................GGTCGTGTAGCGCTTTCAGACGTATT.................................................................................... 26 0 1 3.00 3 2 0 1 0 0
...........................................................................ACAAACCCTGATGGTCGTGTAGCGCTT............................................................................................... 27 0 1 3.00 3 2 1 0 0 0
.........................................................................................................................AGAGGTTTATTGTGTAGTAAGAGTT................................................... 25 0 1 3.00 3 2 1 0 0 0
......................................................................................................................GTGAGAGGTTTATTGTGTAGTAAGAG..................................................... 26 0 1 3.00 3 2 1 0 0 0
..............................................................................................TAGCGCTTTCAGACGTATTCTTGTGT............................................................................. 26 0 1 3.00 3 0 3 0 0 0
..................................TTGTACTTCAAATCTTCACTCATGTT......................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
.........................................................................................................................AGAGGTTTATTGTGTAGTAAGAGT.................................................... 24 0 1 3.00 3 1 2 0 0 0
.....................ACCTACGTCGCATTTGTACTTCAAAT...................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0 0
...........................................................TCCCGTTTCAGGCGTAACAAACCC.................................................................................................................. 24 0 1 3.00 3 3 0 0 0 0
........................................................................................................................GAGAGGTTTATTGTGTAGTAAGAGTT................................................... 26 0 1 3.00 3 2 1 0 0 0
.................................................TCACTCATGTTCCCGTTTCAGGCGT........................................................................................................................... 25 0 1 3.00 3 3 0 0 0 0
....................................................................AGGCGTAACAAACCCTGATGGTCGTGT...................................................................................................... 27 0 1 3.00 3 3 0 0 0 0
..........................................................................................................ACGTATTCTTGTGTGAGAGGTTTAT.................................................................. 25 0 1 3.00 3 0 2 1 0 0
.......................................................................................................................................................................TAAATAGTTTTATCAAAAGTTCCAGT.... 26 0 1 3.00 3 3 0 0 0 0
....TACCGAATGCAAACGCTACCTACGT........................................................................................................................................................................ 25 0 1 3.00 3 3 0 0 0 0
..................................................................................................................TTGTGTGAGAGGTTTATTGTGTAGT.......................................................... 25 0 1 3.00 3 3 0 0 0 0
........................TACGTCGCATTTGTACTTCAAATCT.................................................................................................................................................... 25 0 1 3.00 3 2 1 0 0 0
....................................................................................................................................GTGTAGTAAGAGTTCCCGTAGACTT........................................ 25 0 1 3.00 3 1 2 0 0 0
............GCAAACGCTACCTACGTCGCATTT................................................................................................................................................................. 24 0 9 2.78 25 22 3 0 0 0
.......CGAATGCAAACGCTACCTACGTCGCATTT................................................................................................................................................................. 29 0 8 2.63 21 21 0 0 0 0
..................................................................................................................................................CCCGTAGACTTACAGGATTCTTAAAT......................... 26 0 1 2.00 2 2 0 0 0 0
.......................................................................................GGTCGTGTAGCGCTTTCAGACGTATTCT.................................................................................. 28 0 1 2.00 2 2 0 0 0 0
..........................................................................AACAAACCCTGATGGTCGTGTAGCGCTT............................................................................................... 28 0 1 2.00 2 1 1 0 0 0
...................................................................................TTATGGTCGTGTAGCGCTTTCAGACGT....................................................................................... 27 1 1 2.00 2 0 2 0 0 0
.......................................................................................................................................................AGACTTACAGGATTCTTAAATAGTTTTAT................. 29 0 1 2.00 2 2 0 0 0 0
...................................................................................................................................................CCGTAGACTTACAGGATTCTTAAAT......................... 25 0 1 2.00 2 2 0 0 0 0
.....................................................................................................TTCAGACGTATTCTTGTGTGAGAGGT...................................................................... 26 0 1 2.00 2 1 1 0 0 0
.........................................................GTTCCCGTTTCAGGCGTAACAAACC................................................................................................................... 25 0 1 2.00 2 1 1 0 0 0
.....................................................................................................TTCAGACGTATTCTTGTGTGAGAGGTT..................................................................... 27 0 1 2.00 2 2 0 0 0 0
................ACGCTACCTACGTCGCATTTGTACTT........................................................................................................................................................... 26 0 2 2.00 4 4 0 0 0 0
..............................................................................................................ATTCTTGTGTGAGAGGTTTATTGT............................................................... 24 0 1 2.00 2 1 1 0 0 0
.................................................................TTCAGGCGTAACAAACCCTGATGGTCGT........................................................................................................ 28 0 1 2.00 2 2 0 0 0 0
...........................................................TCCCGTTTCAGGCGTAACAAACCCTGAT.............................................................................................................. 28 0 1 2.00 2 2 0 0 0 0
........................................................................................................................GAGAGGTTTATTGTGTAGTAAGAGT.................................................... 25 0 1 2.00 2 1 1 0 0 0
............................................................CCCGTTTCAGGCGTAACAAACCCTGAT.............................................................................................................. 27 0 1 2.00 2 2 0 0 0 0
.....................................................................................ATGGTCGTGTAGCGCTTTCAGACGTAT..................................................................................... 27 0 1 2.00 2 1 1 0 0 0
..............................................................................................................................TTTATTGTGTAGTAAGAGTTCCCGT.............................................. 25 0 1 2.00 2 0 1 1 0 0
.................................................................................................................TTTGTGTGAGAGGTTTATTGTGTAGT.......................................................... 26 1 1 2.00 2 0 2 0 0 0
...................................................................................................................................TGTGTAGTAAGAGTTCCCGTAGACT......................................... 25 0 1 2.00 2 0 1 1 0 0
....................................................................................................................GTGTGAGAGGTTTATTGTGTAGT.......................................................... 23 0 1 2.00 2 0 2 0 0 0
..........................................................................AACAAACCCTGATGGTCGTGTAGCGCT................................................................................................ 27 0 1 2.00 2 1 1 0 0 0
.............CAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 25 0 3 1.67 5 5 0 0 0 0
............GCAAACGCTACCTACGTCGCATTTG................................................................................................................................................................ 25 0 3 1.67 5 5 0 0 0 0
............GCAAACGCTACCTACGTCGCATTTGTACT............................................................................................................................................................ 29 0 2 1.50 3 3 0 0 0 0
...............................................................................................AGCGCTTTCAGACGTATTCTTGTGT............................................................................. 25 0 3 1.33 4 2 1 0 1 0
.................CGCTACCTACGTCGCATTTGT............................................................................................................................................................... 21 0 3 1.33 4 2 2 0 0 0
............GCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 23 0 9 1.22 11 9 2 0 0 0
.........................................................GTTCCCGTTTCAGGCGTAA......................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0
.....................ACCTACGTCGCATTTGTACTTCAAA....................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
........................................................................................................................GAGAGGTTTATTGTGTAGT.......................................................... 19 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................CTGTGTAGTAAGAGTTCCCGTAGACTT........................................ 27 1 1 1.00 1 0 0 1 0 0
....................TACCTACGTCGCATTTGTACTTCAA........................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................TTATTGTGTAGTAAGAGT.................................................... 18 0 1 1.00 1 1 0 0 0 0
..............AAACGCTACCTACGTCGCATTTGTACTT........................................................................................................................................................... 28 0 2 1.00 2 2 0 0 0 0
.........................................................................................................GACGTATTCTTGTGTGAGAGGTTTAT.................................................................. 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................................TAAATAGTTTTATCAAAAGTTCCAG..... 25 0 1 1.00 1 1 0 0 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGGTTTA................................................................... 28 0 1 1.00 1 1 0 0 0 0
.......................................................................................................CAGACGTATTCTTGTGTGAGAGGTTTAT.................................................................. 28 0 1 1.00 1 1 0 0 0 0
...................................................................................................................................TGTGTAGTAAGAGTTCCCGT.............................................. 20 0 1 1.00 1 0 0 1 0 0
................................................................................................................TATTGTGTGGGAGGTTTATTGTGTAGT.......................................................... 27 2 1 1.00 1 0 1 0 0 0
.........AATGCAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 29 0 3 1.00 3 3 0 0 0 0
.......................CTACGTCGCATTTGTACTTCAAATCTT................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
...................................................................................................................TGTGTGAGAGGTTTATTGTGTAGTAAG....................................................... 27 0 1 1.00 1 0 0 1 0 0
......................................................................................................................GTGAGAGGTTTATTGTGTAGTAAGA...................................................... 25 0 1 1.00 1 0 1 0 0 0
.........................................TCAAATCTTCACTCATGTTCCCGT.................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0
..............................................................................................................ATCCTTGTGTGAGAGGTTTATTGTGT............................................................. 26 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................TTGTGTAGTAAGAGTTCCCGT.............................................. 21 0 1 1.00 1 0 1 0 0 0
.......................................CTTCAAATCTTCACTCATGTT......................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
....................................................................................GATGGTCGTGTAGCGCTTTCAGACG........................................................................................ 25 0 1 1.00 1 1 0 0 0 0
..................................................................................................................TTGTGTGAGAGGTTTATTGTG.............................................................. 21 0 1 1.00 1 1 0 0 0 0
..................................TTGTACTTCAAATCTTCACTCAT............................................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0
......................................ACTTCAAATCTTCACTCATGTTCCCGTT................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0
...........................................................................................................................................AAGAGTTCCCGTAGACTTACAGGATT................................ 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................GGTCGTGTAGCGCTTTCAGACGT....................................................................................... 23 0 1 1.00 1 0 1 0 0 0
............................................................................................................................GGTTTATTGGGTAGTAAGAGT.................................................... 21 1 1 1.00 1 1 0 0 0 0
......................................................................................................................................GTAGTAAGAGTTCCCGTAGACTT........................................ 23 0 1 1.00 1 1 0 0 0 0
..................................................................................................................................TTGTGTAGTAAGAGTTCCCGTAGACT......................................... 26 0 1 1.00 1 0 1 0 0 0
..................GCTACCTACGTCGCATTTGTACTTCAAAT...................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
...........................................................................ACAAACCCTGATGGTCGTGTAGCGCTTT.............................................................................................. 28 0 1 1.00 1 1 0 0 0 0
.....................ACCTACGTCGCATTTGTACTTCAA........................................................................................................................................................ 24 0 1 1.00 1 0 1 0 0 0
.AATTACCGAATGCAAACGCTACCTAC.......................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
...........................................................TCCCGTTTCAGGCGTAACAAACCCTG................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
........................................................................................GTCGTGTAGCGCTTTCAGACGTATTCT.................................................................................. 27 0 1 1.00 1 0 1 0 0 0
..........................................................TTCCCGTTTCAGGCGTAACAAACCCT................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................................................AGACTTACAGGAATCTTAAATAGT...................... 24 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................TTGTGTAGTAAGAGTTCCCGTAGACTT........................................ 27 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................TGTGTAGTAAGTGTTCCCGTAGACTT........................................ 26 1 1 1.00 1 0 1 0 0 0
..........................................................................AACAAACCCTGATGGTCGTGTAGCGCTG............................................................................................... 28 1 1 1.00 1 1 0 0 0 0
..............................................................................................................................TTTATTGAGTAGTAAGAGTG................................................... 20 2 1 1.00 1 0 0 1 0 0
............................................................................CAAACCCTGATGGTCGTGTAGCGCTTT.............................................................................................. 27 0 1 1.00 1 1 0 0 0 0
................................ATTTGTACTTCAAATCTTCACTCATGT.......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............................................................................AACCCTGATGGTCGTGTAGCGCTTT.............................................................................................. 25 0 1 1.00 1 1 0 0 0 0
............................................................................CAAACCCTGATGGTCGTGTAGCGCT................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
......................................................................................TGGTCGTGTAGCGCTTTCAGACGT....................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...............................................................................................................TTTTTGTGTGAGAGGTTTATTGTGTAGT.......................................................... 28 1 1 1.00 1 0 0 1 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGGTTT.................................................................... 27 0 1 1.00 1 0 1 0 0 0
...............................................................................................................TTCTTGTGTGAGAGGTTTATTGTGT............................................................. 25 0 1 1.00 1 0 1 0 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGG....................................................................... 24 0 1 1.00 1 1 0 0 0 0
..........................................................................................................................................................CTTACAGGATTCTTAAATAGTTTTAT................. 26 0 1 1.00 1 1 0 0 0 0
..................GCTACCTACGTCGCATTTGTACTTCAA........................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0
.............................................................................AAACCCTGATGGTCGTGTAGCGCTTT.............................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...................................................................................................................TGTGTGAGAGGTTTATTGTGT............................................................. 21 0 1 1.00 1 0 0 1 0 0
...............................................................................................................................TTATTGCGTAGTAAGAGTTCCCGT.............................................. 24 1 1 1.00 1 0 1 0 0 0
..................................................................TCAGGCGTAACAAACCCTGATGGTCGTGT...................................................................................................... 29 0 1 1.00 1 1 0 0 0 0
....................................................................................GATGGTCGTATAGCGCTTTCAGACGT....................................................................................... 26 1 1 1.00 1 0 1 0 0 0
............................................................................................................................GGTTTATTGTGTAGTAAGAGTTCCCGT.............................................. 27 0 1 1.00 1 1 0 0 0 0
..................................................................TCAGGCGTAACAAACCCTGATGGTCGT........................................................................................................ 27 0 1 1.00 1 1 0 0 0 0
....................................................................................................................ATGTGAGAGGTTTATTGTGTAGTAAG....................................................... 26 1 1 1.00 1 1 0 0 0 0
........................................................................................................................................................GACTTACAGGATTCTTAAATAGTTT.................... 25 0 1 1.00 1 1 0 0 0 0
...................................TGTACTTCAAATCTTCACTCATGTTCCC...................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................AGGTTTATTGTGTAGTAAGAGT.................................................... 22 0 1 1.00 1 1 0 0 0 0
.....................................................................GGCGTAACAAACCCTGATGGTCGTGT...................................................................................................... 26 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................ACTTACAGGATTCTTAAATAGTTTTAT................. 27 0 1 1.00 1 1 0 0 0 0
...................................................................................................................TGTGTGAGAGGTTTATTGTGTAGTA......................................................... 25 0 1 1.00 1 0 1 0 0 0
................................................................................................................TCTTGTGTGAGAGGTTTATTGTGT............................................................. 24 0 1 1.00 1 0 0 0 1 0
....................................................................................................................................GTGTAGTACGAGTTCCCGTAGACTT........................................ 25 1 1 1.00 1 0 0 0 1 0
....................TACCTACGTCGCATTTGTACTTCAAAT...................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0
.......................................................................................................CAGACGTATTCTTGTGTGAGAGGTTT.................................................................... 26 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................TAGACTTACAGGATTCTTAAATAGTTT.................... 27 0 1 1.00 1 1 0 0 0 0
......................................................................GCGTAACAAACCCTGATGGTCGTGT...................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
.......................................................................................................................TGAGAGGTTTATTGTGTAGTAAGAGTT................................................... 27 0 1 1.00 1 0 1 0 0 0
...........................................................TCCCGTTCCAGGCGTAACAAACCCT................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
....................................................................................GCTGGTCGTGTAGCGCTTTCAGACGTAT..................................................................................... 28 1 1 1.00 1 0 0 1 0 0
....................................................................................................TTTCAGACGTATTCTTGTGTGAGAGGT...................................................................... 27 0 1 1.00 1 1 0 0 0 0
........................................................................................................AGACGTATTCTTGTGTGAGAGGT...................................................................... 23 0 1 1.00 1 0 0 1 0 0
..........................................................TTCCCGTTTCAGGCGTAACAAACC................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0
...................................................................................................................TTTGTGAGAGGTTTATTGTGTAGT.......................................................... 24 1 1 1.00 1 0 0 1 0 0
...................................................................................TGATGGTCGTGTAGCGCTTTCAGACGT....................................................................................... 27 0 1 1.00 1 1 0 0 0 0
..............AAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 24 0 3 1.00 3 3 0 0 0 0
.........................ACGTCGCATTTGTACTTCAAAT...................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0
.............................................................................................GTAGCGCTTTCGGACGTATTCTTGT............................................................................... 25 1 1 1.00 1 0 1 0 0 0
.....................................................................................................................................................GTAGACTTACAGGATTCTTAAATAGTTT.................... 28 0 1 1.00 1 1 0 0 0 0
....................................................................................................................GTGTGAGAGGTTTATTGTGTAGTA......................................................... 24 0 1 1.00 1 1 0 0 0 0
....................................................................................GATGGTCGTGTAGCGCTTTCAGACGTAT..................................................................................... 28 0 1 1.00 1 1 0 0 0 0
.................CGCTACCTACGTCGCATTTGTACTT........................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0 0
......................................................................................................TCAGACGTATTCTTGTGTGAGAGGTTTAT.................................................................. 29 0 1 1.00 1 1 0 0 0 0
................................................................TTTCAGGCGTAACAAACCCTGAT.............................................................................................................. 23 0 1 1.00 1 1 0 0 0 0
....................................................................................................TTTCAGACGTATTCTTGTGTGAGAGGTT..................................................................... 28 0 1 1.00 1 0 0 1 0 0
.....................ACCTACGTCGCATTTGTACTTCAAATCT.................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0
.................................................................................................................ATTGTGTGAGAGGTTTATTGTGTAG........................................................... 25 1 1 1.00 1 1 0 0 0 0
...............AACGCTACCTACGTCGCATTTGTACT............................................................................................................................................................ 26 0 2 1.00 2 1 1 0 0 0
.............................................................................................................................................GAGTTCCCGTAGACTTACAGGA.................................. 22 0 1 1.00 1 1 0 0 0 0
........................................................................................ATCGTGTAGCGCTTTCAGACGTATTCT.................................................................................. 27 1 1 1.00 1 1 0 0 0 0
........................................................................................................AGACGTATTCTTGTGCGAGAGGTTTAT.................................................................. 27 1 1 1.00 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTACGT........................................................................................................................................................................ 22 0 8 0.88 7 5 2 0 0 0
........GAATGCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 27 0 8 0.75 6 6 0 0 0 0
............GCAAACGCTACCTAAGTCGCATTTGT............................................................................................................................................................... 26 1 3 0.67 2 2 0 0 0 0
..........ATGCAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 28 0 3 0.67 2 2 0 0 0 0
...........TGCAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 27 0 3 0.67 2 2 0 0 0 0
........GAATGCAAACGCTACCTACGTCGCAT................................................................................................................................................................... 26 0 8 0.63 5 4 1 0 0 0
...................CTACCTACGTCGCATTTGTAC............................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0
..............ATACGCTACCTACGTCGCATTTGTACT............................................................................................................................................................ 27 1 2 0.50 1 1 0 0 0 0
............GCAAACGCTACCTACGTCGCATTTGTA.............................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0 0
....................TACCTACGTCGCATTTGTACTT........................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0 0
.....................ACCTACGTCGCATTTGTACTT........................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0 0
...........................................................TCCCGTTGCACGCGTACCAAA..................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0
.............CAAACGCTACCTACGTCGCATTTGTA.............................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTACGTCGC..................................................................................................................................................................... 25 0 8 0.50 4 3 1 0 0 0
............GCAAACGCTACCTACGTCGCATTTGTAC............................................................................................................................................................. 28 0 2 0.50 1 1 0 0 0 0
..............AAACGCTACCTACGTCGCATTTGTAC............................................................................................................................................................. 26 0 2 0.50 1 0 1 0 0 0
..................GCTACCTACGTCGCATTTGTACTT........................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0
...............TACGCTACCTACGTCGCATTTGTACTT........................................................................................................................................................... 27 1 2 0.50 1 0 1 0 0 0
.............CAAACGCTACCTACGTCGCATTTGTACT............................................................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0
..........ATGCAAACGCTACCTACGTCGCATTT................................................................................................................................................................. 26 0 9 0.44 4 4 0 0 0 0
...........TGCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 24 0 9 0.44 4 3 1 0 0 0
............GCAAACGCTACCTACGTCGCAT................................................................................................................................................................... 22 0 9 0.44 4 3 1 0 0 0
.............AAAACGCTACCTACGTCGCATTTGT............................................................................................................................................................... 25 1 3 0.33 1 1 0 0 0 0
............GCAAACGCTACCTAGGTCGCATTTGT............................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
...............................................................................................AGCGCTTTCAGACTTATTCTTGTGT............................................................................. 25 1 3 0.33 1 1 0 0 0 0
............GCAAACGTTACCTACGTCGCATTTGT............................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
............GCAAACGCTAGCTACGTCGCATTTGT............................................................................................................................................................... 26 1 3 0.33 1 1 0 0 0 0
..................GCTACCTACGTCGCATTTGT............................................................................................................................................................... 20 0 3 0.33 1 1 0 0 0 0
.........AATGCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 26 0 9 0.33 3 3 0 0 0 0
.......CGAATGCAAACGCTACCTACGTCGCA.................................................................................................................................................................... 26 0 8 0.25 2 2 0 0 0 0
................ACGCTACCTACGTCGCATTT................................................................................................................................................................. 20 0 9 0.22 2 2 0 0 0 0
............GCAAACGCTACCTACGTCGCATTAT................................................................................................................................................................ 25 2 9 0.22 2 2 0 0 0 0
...........TGCAAACGCTACCTACGTCGCATTT................................................................................................................................................................. 25 0 9 0.22 2 2 0 0 0 0
............GCAAACGCTACCTACGTCGCA.................................................................................................................................................................... 21 0 9 0.22 2 1 1 0 0 0
........................................................................................................................GAGAGGTTTAATGTGGAG........................................................... 18 2 6 0.17 1 1 0 0 0 0
.....................ACCTACGTCGCATTTGTACTTCAAAGC..................................................................................................................................................... 27 1 7 0.14 1 1 0 0 0 0
......................CCTACGTCGCATTTGTACTTCAAAGC..................................................................................................................................................... 26 1 7 0.14 1 1 0 0 0 0
........GAATGCAAACGCTACCTACGTCGC..................................................................................................................................................................... 24 0 8 0.13 1 0 1 0 0 0
.......CGAATGCAAACGCTACCTACGTA....................................................................................................................................................................... 23 1 8 0.13 1 1 0 0 0 0
.......CGAATGCAAACGCTACGTACGTCGCATT.................................................................................................................................................................. 28 1 8 0.13 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTACGTCGCAA................................................................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTACGCCGC..................................................................................................................................................................... 25 1 8 0.13 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTACGTCGTT.................................................................................................................................................................... 26 2 8 0.13 1 1 0 0 0 0
.......CGAATGCAAACGCTGCCTACGTCGCAT................................................................................................................................................................... 27 1 8 0.13 1 1 0 0 0 0
.............CAAACGCTACCTACGTCGC..................................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0
............GCAAACGCTACCTACGTCG...................................................................................................................................................................... 19 0 9 0.11 1 0 1 0 0 0
...........TGCAAACGCTACCTACGTCGCAT................................................................................................................................................................... 23 0 9 0.11 1 1 0 0 0 0
...............AACGCTACCTACGTCGCATTT................................................................................................................................................................. 21 0 9 0.11 1 1 0 0 0 0
..........ATGCAAACGCTACCTACGTC....................................................................................................................................................................... 20 0 9 0.11 1 1 0 0 0 0
............GCAAACGCAACCTACGTCGCATTT................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTA........................................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0
.......CGAATGCAAACGCTACCTAC.......................................................................................................................................................................... 20 0 9 0.11 1 1 0 0 0 0
.............CAAACGCTACCTACGTCGCAT................................................................................................................................................................... 21 0 9 0.11 1 1 0 0 0 0
..............AAACGCTACCTACGTCGCATTT................................................................................................................................................................. 22 0 9 0.11 1 1 0 0 0 0
.................CGCTACCTACGTCGCATTT................................................................................................................................................................. 19 0 9 0.11 1 0 1 0 0 0
..............AAACGCTACCTACGTCGCATT.................................................................................................................................................................. 21 0 9 0.11 1 1 0 0 0 0
............GCAAACGCTACCTACTTCGCATTT................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0 0
..........ATGCAAACGCTACCTACGTCGCATT.................................................................................................................................................................. 25 0 9 0.11 1 1 0 0 0 0
...............AACGCTACCTACGTCGCAT................................................................................................................................................................... 19 0 9 0.11 1 1 0 0 0 0
............GCAAACGCTACCTACGTCGCATTTTA............................................................................................................................................................... 26 2 9 0.11 1 1 0 0 0 0
.........AATGCAAACGCTACCTACGTCGCAT................................................................................................................................................................... 25 0 9 0.11 1 1 0 0 0 0
............GCAAACGCTACCTACGTCGCATTTTAT.............................................................................................................................................................. 27 3 9 0.11 1 1 0 0 0 0
.........AATGCAAACGCTACCTACGT........................................................................................................................................................................ 20 0 9 0.11 1 0 1 0 0 0
............GCAAACGCTACCTACGTCGCATTC................................................................................................................................................................. 24 1 9 0.11 1 1 0 0 0 0
........................................................................................................................GAGAGGTTTAATGTTTAG........................................................... 18 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004954:5080956-5081152 + dwi_3792 TTTAATGGCTTACGTTTGCGATGGATGCAGCGTAAACATGAAGTTTAGAAGTGAGTACAAGGGCAAAGTCCGCATTGTTTGGGACTACCAGCACATCGCGAAAGTCTGCATAAGAACACACTCTCCAAATAACACATCATTCTCAAGGGCATCTGAATGTCCTAAGAATTTATCAAAATAGTTTTCAAGGTCAACGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTAATGGCTTACGTTTGCGATGGATGCAGCGTAAACATGAAGTTTAGAAGTGAGTACAAGGGCAAAGTCCGCATTGTTTGGGACTACCAGCACATCGCGAAAGTCTGCATAAGAACACACTCTCCAAATAACACATCATTCTCAAGGGCATCTGAATGTCCTAAGAATTTATCAAAATAGTTTTCAAGGTCAACGGSizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
...................GATGGATGCAGCGTAAACATGAAGTT........................................................................................................................................................2613.00300300
..TAATGGCTTACGTTTGCGATGGATGC.........................................................................................................................................................................2612.00200020
..........................................................................................................TGCATAAGAACACACTCTCCAAATAACA...............................................................2812.00202000
.........................................................................................................CTGCATAAGAACACACTCTCCAAA....................................................................2411.00101000
..TAATGGCTTACGTTTGCGATGGA............................................................................................................................................................................2311.00101000
..........................................................................................................................................................................TATCAAAATAGTTTTCAAGGTCAACGG2711.00101000
...............................................GAAGTGAGTACAAGGGCAAAGTCCG.............................................................................................................................2511.00101000
........................ATGCAGCGTAAACATGAAGTTTAGA....................................................................................................................................................2511.00100010
.........................TGCAGCGTAAACATGAAGTTTAGAAG..................................................................................................................................................2611.00100010
.............................................................................TTTGGGACTACCAGCACATCGCGAAAG.............................................................................................2711.00100010
...................GATGGATGCAGCGTAAACATGAAG..........................................................................................................................................................2411.00101000
............................AGCGTAAACATGAAGTTTAGAAG..................................................................................................................................................2311.00100010
.................................................................................................................................TAACACATCATTCTCAAGGGCAT.............................................2311.00101000
........................ATGCAGCGTAAACATGAAGTTTAGAAG..................................................................................................................................................2711.00100010
.......................................................................................................................................ATCATTCTCAAGGGCATCTGAATG......................................2411.00101000
............................................................................................ACATCGCGAAAGTCTGCATAAGA..................................................................................2311.00100100
.......................................................................................................GTCTGCATAAGAACACACTCTC........................................................................2211.00101000
...................................................TGAGTACAAGGGCAAAGTCCGCATTGTT......................................................................................................................2811.00101000
................................................................................................CGCGAAAGTCTGCATAAGAACACACTC..........................................................................2711.00101000
.................................................................................................................................TAACACATCATTCTCAAGGGCATCTG..........................................2611.00101000
........................................................................................................TCTGCATAAGAACACACTCTCCAA.....................................................................2411.00101000
................................TAAACATGAAGTTTAGAAGTGAG..............................................................................................................................................2311.00101000
...........................................................................................CACATCGCGAAAGTCTGCATAAGA..................................................................................2411.00101000
...................GATGGATGCAGCGTAAACATGAAGT.........................................................................................................................................................2511.00100010
.......................................................TACAAGGGCAAAGTCCGCATTG........................................................................................................................2211.00100010
........................................................................................................................................TCATTCTCAAGGGCATCTGAATGTC....................................2511.00100010
...............TTGCGATGGATGCAGCGTAAAC................................................................................................................................................................2230.67201010
................TGCGATGGATGCAGCGTAAACATGA............................................................................................................................................................2520.50100100
..................CGATGGATGCAGCGTAAACAT..............................................................................................................................................................2120.50100010
................TGCGATGGATGCAGCGTAAACAT..............................................................................................................................................................2320.50100100
...........ACGTTTGCGATGGATGCAGCGTAAACA...............................................................................................................................................................2730.33100010
........CTTACGTTTGCGATGGATGCAGC......................................................................................................................................................................2380.13100010
.........TTACGTTTGCGATGGATGCAG.......................................................................................................................................................................2190.11100010
...........ACGTTTGCGATGGATGCAGCG.....................................................................................................................................................................2190.11100100
.........TTACGTTTGCGATGGATGCAGC......................................................................................................................................................................2290.11101000
..........TACGTTTGCGATGGATGCAG.......................................................................................................................................................................2090.11101000
..........TACGTTTGCGATGGATGC.........................................................................................................................................................................18100.10101000
..........TACGTTTGCGATGGATGTT........................................................................................................................................................................19110.09100010

Generated: 05/18/2015 at 08:14 AM