ID:

dwi_3760

 Coordinate:

scf2_1100000004954:4430801-4430951 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-16.1 -15.7 -15.7

Flybase annnotation

exon [dwil_GLEANR_6618:1]; CDS [Dwil\GK23296-cds]; intron [Dwil\GK23296-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CAATGAGATCGCCAATTTGCGGAGGATCCCCATTGGTGACATAGGAAGCGGTAAAATACGTAGACGAGATTGCAGACACCACCAAGCGGGCCAATGCGATAATTTTGTTCAGAAATTTGAAAATTTTCAAAAGCATTCTCTTTGTGGTGTGCATTGATGAATTTTTCTTCCCATATGCAAGTAAATAGAAAATAGTTATTATTTATTTTTTTTTTAGTTTTTTAAAGTTAATAAAAAATAATTAAAATTTT
****************************************************************............((((((.(((.(((..(((((..........(((((....)))))...........)))))))))))))))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 V118
embryo
 V119
head
............................................GTAGCGGTGAAATGCGTAGA........................................................................................................................................................................................... 20 3 4 8.75 35 27 8 0 0
............................................GTAGCGGTGAAATGCGTAG............................................................................................................................................................................................ 19 3 7 8.29 58 50 7 0 1
................................................................CGAGATTGCAGACACCACCAAGC.................................................................................................................................................................... 23 0 1 5.00 5 5 0 0 0
..............................................AGCGGTGAAATGCGTAGA........................................................................................................................................................................................... 18 2 6 5.00 30 30 0 0 0
.............................................................................................................................TTCAAAAGCATTCTCTTTGTGGTG...................................................................................................... 24 0 1 3.00 3 3 0 0 0
....................................................................ATTGCAGACACCACCAAGCGGG................................................................................................................................................................. 22 0 1 3.00 3 3 0 0 0
.............................................AAGCGGTAAAATACGTAGACGAG....................................................................................................................................................................................... 23 0 1 3.00 3 3 0 0 0
................................................................CGAGATTGCAGACACCACCAAGCGG.................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
................TTGCGGAGGATCCCCATTGGTGACA.................................................................................................................................................................................................................. 25 0 1 2.00 2 1 0 1 0
................................................CGGTAAAATACGTAGACGAGATT.................................................................................................................................................................................... 23 0 1 2.00 2 2 0 0 0
................................................CGGTAAAATACGTAGACGAGA...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................ATGCAAGTAAATAGAAAATAGTTA..................................................... 24 0 1 1.00 1 0 0 1 0
...................................................TAAAATACGTAGACGAGATTGCAGACAC............................................................................................................................................................................ 28 0 1 1.00 1 1 0 0 0
...............................................................................................................................................GTGGTGTGCATTGATGAATTTTTCT................................................................................... 25 0 1 1.00 1 1 0 0 0
................TTGCGGAGGATCCCCATTGGTGACAT................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
..................................................................AGATTGCAGACACCACCAAGCGGGCC............................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1
.................................................AGTGAAATGCGTAGACGAGATT.................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0
.............................................AAGCGGTAAAATACGTAGACGAGAT..................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.................TGCGGAGGATCCCCATTGGTGACATAG............................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
................TTGCGGAGGATCCCCATTGGTGACT.................................................................................................................................................................................................................. 25 1 1 1.00 1 0 0 1 0
.............................CCATTGGTGACATAGGAAG........................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
............................................GTAGCGGTAAAATGCGTAGA........................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0
..............................................................................CCACCAAGCGGGCCAATGCGATAATTT.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
............................................GTAGCGGTAGAATGCGTAGA........................................................................................................................................................................................... 20 3 1 1.00 1 0 1 0 0
.............AATTTGCGGAGGATCCCCATTGGTGA.................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
................................................CGGTAAAATACGTAGACGAGATTGCA................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
...........................................................GTAGACGAGATTGCAGACACCACC........................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..............................................................................................TGCGATGATTTTGTTCAGAAATTTG.................................................................................................................................... 25 1 1 1.00 1 1 0 0 0
...................................................................................................................................................TGTGCATTGATGAATTTTTCTTCCCA.............................................................................. 26 0 1 1.00 1 1 0 0 0
...............TTTGCGGAGGATCCCCATTGGTGA.................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0
..............................................AGCGGTAAAATACGTAGA........................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.........................ATCCCCATTGGTGACATAGGAAGCGG........................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
......................AGGATCCCCATTGGTGACATAGGA............................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
.............................................AAGCGGTAAAATACGTAGACGAGA...................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................ATGCAAGTAAATAGAAAATAGTTAT.................................................... 25 0 1 1.00 1 1 0 0 0
................TTGCGGAGGATCCCCATTGGTGA.................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0
..............................................AGCGGTAAAATACGTAGACGAGA...................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
............................................GTAGCGGTTAAATGCGTAGA........................................................................................................................................................................................... 20 3 1 1.00 1 1 0 0 0
..............................................AGCGGTGAAATGCGTAGATGA........................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0
.............................................TAGCGGTGAAATGCGTAGA........................................................................................................................................................................................... 19 3 15 0.40 6 5 1 0 0
.............................................TAGCGGTGAAATGCGTAG............................................................................................................................................................................................ 18 3 20 0.40 8 8 0 0 0
...............................................................................CAGCAGGCGGGCCAATGCG......................................................................................................................................................... 19 2 5 0.20 1 1 0 0 0
.............................................................................................................................................TTCCGGTGTTCATTGATGAAT......................................................................................... 21 3 8 0.13 1 0 1 0 0
............................................GAAGCGGTGAAATGCGTA............................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0

Anti-sense strand reads

GTTACTCTAGCGGTTAAACGCCTCCTAGGGGTAACCACTGTATCCTTCGCCATTTTATGCATCTGCTCTAACGTCTGTGGTGGTTCGCCCGGTTACGCTATTAAAACAAGTCTTTAAACTTTTAAAAGTTTTCGTAAGAGAAACACCACACGTAACTACTTAAAAAGAAGGGTATACGTTCATTTATCTTTTATCAATAATAAATAAAAAAAAAATCAAAAAATTTCAATTATTTTTTATTAATTTTAAAA
******************************************************************************************************............((((((.(((.(((..(((((..........(((((....)))))...........)))))))))))))))))**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V119
head
GTTACTCTAGCGGTTAAACGCCTCCT................................................................................................................................................................................................................................. 26 0 1 21.00 21 20 1 0 0
........................................................................................CCGGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 26 0 1 16.00 16 9 1 6 0
......................................................................................GCCCGGTTACGCTATTAAAACAAGT............................................................................................................................................ 25 0 1 7.00 7 4 3 0 0
..............................................TCGCCATTTTATGCATCTGCTCTAACGT................................................................................................................................................................................. 28 0 1 7.00 7 5 2 0 0
.....................................................................................CGCCCGGTTACGCTATTAAAACAAGT............................................................................................................................................ 26 0 1 7.00 7 4 3 0 0
......CTAGCGGTTAAACGCCTCCTAGGGGT........................................................................................................................................................................................................................... 26 0 1 6.00 6 3 2 0 1
........................................................................................CCGGTTACGCTATTAAAACAAGTCTTT........................................................................................................................................ 27 0 1 6.00 6 2 0 4 0
............................................................................................................................................................TACTTAAAAAGAAGGGTATACGTTCAT.................................................................... 27 0 1 6.00 6 4 2 0 0
....................................................................................TCGCCCGGTTACGCTATTAAAACAAGT............................................................................................................................................ 27 0 1 6.00 6 6 0 0 0
.......TAGCGGTTAAACGCCTCCTAGGGGT........................................................................................................................................................................................................................... 25 0 1 5.00 5 2 3 0 0
......................................................................................GCCCGGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 28 0 1 4.00 4 3 0 1 0
........................................................ATGCATCTGCTCTAACGTCTGTGGT.......................................................................................................................................................................... 25 0 1 4.00 4 3 1 0 0
.....................................................TTTATGCATCTGCTCTAACGTCTGT............................................................................................................................................................................. 25 0 1 4.00 4 2 2 0 0
GTTACTCTAGCGGTTAAACGCCTCC.................................................................................................................................................................................................................................. 25 0 1 4.00 4 4 0 0 0
...............................................................................................................................................................................ACCTTCAATTATCTTTTAT......................................................... 19 2 20 3.50 70 51 6 0 13
..............................................................CTGCTCTAACGTCTGTGGTGGTTCGC................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0
.................ACGCCTCCTAGGGGTAACCACTGT.................................................................................................................................................................................................................. 24 0 1 3.00 3 3 0 0 0
.............................GGTAACCACTGTATCCTTCGCCATTT.................................................................................................................................................................................................... 26 0 1 3.00 3 3 0 0 0
...................GCCTCCTAGGGGTAACCACTGTATCCT............................................................................................................................................................................................................. 27 0 1 3.00 3 3 0 0 0
.....................CTCCTAGGGGTAACCACTGTATCCT............................................................................................................................................................................................................. 25 0 1 3.00 3 3 0 0 0
..............................................................................GGTGGTTCGCCCGGTTACGCTATT..................................................................................................................................................... 24 0 1 3.00 3 2 1 0 0
..........................AGGGGTAACCACTGTATCCTTCGCCAT...................................................................................................................................................................................................... 27 0 1 3.00 3 3 0 0 0
................................AACCACTGTATCCTTCGCCATTTTAT................................................................................................................................................................................................. 26 0 1 3.00 3 3 0 0 0
.....TCTAGCGGTTAAACGCCTCCTAGGGGT........................................................................................................................................................................................................................... 27 0 1 3.00 3 2 1 0 0
.................................................CCATTTTATGCATCTGCTCTAACGT................................................................................................................................................................................. 25 0 1 2.00 2 2 0 0 0
.............................................................................................................................................................ACTTAAAAAGAAGGGTATACGTTCAT.................................................................... 26 0 1 2.00 2 2 0 0 0
.........................................................................................CGGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 25 0 1 2.00 2 2 0 0 0
.........................................................TGCATCTGCTCTAACGTCTGTGGTGGT....................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
.......................................................................................CCCGGTTACGCTATTAAAACAAGTCT.......................................................................................................................................... 26 0 1 2.00 2 0 0 2 0
..........................AGGGGTAACCACTGTATCCTTCGCCATTT.................................................................................................................................................................................................... 29 0 1 2.00 2 2 0 0 0
.....................CTCCTAGGGGTAACCACTGTATCCTT............................................................................................................................................................................................................ 26 0 1 2.00 2 2 0 0 0
....................................................................................TCGCCCGGTTACGCTATTAAAACAAG............................................................................................................................................. 26 0 1 2.00 2 2 0 0 0
.........................................................................................CGGTTACGCTATTAAAACAAGTCTTT........................................................................................................................................ 26 0 1 2.00 2 2 0 0 0
..........................AGGGGTAACCACTGTATCCTTCGCCATT..................................................................................................................................................................................................... 28 0 1 2.00 2 2 0 0 0
..................................................................................................................................TTCGTAAGAGAAACACCACACGTAACT.............................................................................................. 27 0 1 2.00 2 2 0 0 0
.......................................................TATGCATCTGCTCTAACGTCTGTGGT.......................................................................................................................................................................... 26 0 1 2.00 2 2 0 0 0
...........GGTTAAACGCCTCCTAGGGGTAACCAC..................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
..............................................................................................................................................................CTTAAAAAGAAGGGTATACGTTCAT.................................................................... 25 0 1 2.00 2 1 1 0 0
...............................................................TGCTCTAACGTCTGTGGTGGTTCGC................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0
...........................GGGGTAACCACTGTATCCTTCGCCATT..................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0
..........................................................................................GGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.............................................................................TGGTGGTTCGCCCGGTTACGCTATT..................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0
..........................................................GCATCTGCTCTAACGTCTGTGGTGGT....................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
..........................................................GCATCTGCTCTAACGTCTGTGG........................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
..............................GTAACCACTGTATCCTTCGCCATT..................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
...........................GGGGTAACCACTGTATCCTTCGCCAT...................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.............................................................................................................................................................................................................AAAAAAAAAATCAAAAAATTTCAATTAT.................. 28 0 1 1.00 1 1 0 0 0
..........................................................................CTGTGGTGGTTCGCCCGGTTACGCTATT..................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
............................................................................GTGGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................................................................................................................GAGAAACACCACACGTAACTACT........................................................................................... 23 0 1 1.00 1 1 0 0 0
.............................................................TCTGCTCTAACGACTGTGGTGGTT...................................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
...........................GGGGTAACCACTGTATCCTTCGCCATTT.................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
...............AAACGCCTCCTAGGGGTAACCACTGTA................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
...................................................................................................................................................................................TCATTTATCTTTTATCAATAATAAAT.............................................. 26 0 1 1.00 1 1 0 0 0
....................................................................................TCGCCCGGTTACGCTATTAAAATAAGT............................................................................................................................................ 27 1 1 1.00 1 1 0 0 0
...ACTCTAGCGGTTAAACGCCTCCT................................................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
..............................................................................................................................................ACACCACACGTAACTACTTA......................................................................................... 20 0 1 1.00 1 1 0 0 0
.......................................................................................CCCCGTAACGCTACTAAAACAAGTCTT......................................................................................................................................... 27 3 1 1.00 1 1 0 0 0
.........................................................................ATTGTGGTGGTTCGCCCGGTTACGC......................................................................................................................................................... 25 2 1 1.00 1 1 0 0 0
.............................GGTAACCACTGTATCCTTCGCCATTTT................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
..............................................TCGCCATTTTATGCATCTGCTCTAA.................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..........................................................TCATCTGCTCTAACGTCTGTGGTGGT....................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0
................................................................................................................................................................TAAAAAGAAGGGTATACGTTC...................................................................... 21 0 1 1.00 1 1 0 0 0
..................................CCACTGTATCCTTCGCCATTTTAT................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0
....................................................................................TCGCCCGGTTACGCTATTGAAACAAGT............................................................................................................................................ 27 1 1 1.00 1 0 1 0 0
................................................................................................................................................................................CGTTCATTTATCTTTTATCAATAAT.................................................. 25 0 1 1.00 1 1 0 0 0
.............................................................................................AACGCTACTAAAACAAGTCTTTAAACTT.................................................................................................................................. 28 2 1 1.00 1 1 0 0 0
.............................................................ACTGCTCTAACGTCTGTGGTGGTTCGC................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
..............................TTAACCACTGTATCCTTCGCCATTTTAT................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0
.............................GGTAACCACTGTATCCTTCGCCATT..................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..............................................................................GGTGGTTCGCCCGGTTACGC......................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
...........................GGGGTAACCACTGTATCCTTCGCCATTTT................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
..........................................................................TTGTGGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0
................AACGCCTCCTAGGGGTAACCACTGT.................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
GTTACTCTAGCGGTTAAACGCCTC................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................CTACTTAAAAAGAAGGGTATACGTTCAT.................................................................... 28 0 1 1.00 1 1 0 0 0
.............................................................................TGGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..............TAAACGCCTCCTAGGGGTAACCACTGT.................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
................................................GCCATTTTATGCATCTGCTCTAACGT................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................................................TTATCTTTTATCAATAATAAAT.............................................. 22 0 1 1.00 1 1 0 0 0
......................................................................ACGTCTGTGGTGGTTCGCCCGGT.............................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
...........................................................CATCTGCTCTAACGTCTGTGGTGGT....................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.................................................................................................................................TTTCGTAAGAGAAACACCACACGTAACT.............................................................................................. 28 0 1 1.00 1 1 0 0 0
.........................................................................................................................................................AACTACTTAAAAAGAAGGGTATACGT........................................................................ 26 0 1 1.00 1 0 1 0 0
.....................................................................................CGCCCGGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
...................................CACTGTATCCTTCGCCATTTTAT................................................................................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
.........................................................................TCTGTGGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
...............................................CGCCATTTTATGCATCTGCTCTAACG.................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0
..........................................................GCATCTGCTCTAACGTCTGTGGTGG........................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...........................................................................TGTGGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.................................................................................................................................TTTCGTAAGAGAAACACCACACGT.................................................................................................. 24 0 1 1.00 1 1 0 0 0
...........................................................CATCTGCTCTAACGTCTGTGGTGGTT...................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
........................................................................................CCGGTTACGCTATTAAAACAAGTCT.......................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
.........................................ATCCTTCGCCATTTTATGCATCTGCTCT...................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0
......................................................TTATGCATCTGCTCTAACGTCTGTGGT.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.........GCGGTTAAACGCCTCCTAGGGGTA.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
.......................................................................................CCCGGTTACGCTATTAAAACAAGTCTT......................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.........................................................................................CCGTAACGCTACTAAAACAAGTCTT......................................................................................................................................... 25 3 1 1.00 1 1 0 0 0
............................................................ATCTGCTCTAACGTCTGTGGTGGT....................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................CTAGGGGTAACCACTGTATCCTTCGCCAT...................................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0
................................................................GCTCTAACGTCTGTGGTGGTTCGC................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
..TACTCTAGCGGTTAAACGC...................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
...........................................................................TGTGGTGGTTCGCCCGGTTACGCTATT..................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
..TACTCTAGCGGTTAAACGCCTCCT................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
..........CGGTTAAACGCCTCCTAGGGGTAA......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
...............................................CGCCATTTTATGCATCTGCTCTAACGT................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0
......................................TGTATCCTTCGCCATTTTATGCATC............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
......................................TGTATCCTTCGCCATTTTATGCATCT........................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
.TTACTCTAGCGGTTAAACGCCTCCT................................................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0
..............................................TCGCCATTTTATGCATCTGCTCTA..................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................TTTAAAAGTTTCCGTAAGAGAAACAC......................................................................................................... 26 1 1 1.00 1 1 0 0 0
......................................................................................GCCCGGTTACGCTATTAAAACAAGTCT.......................................................................................................................................... 27 0 1 1.00 1 0 0 1 0
............................................................................................................................................................TACTTAAAAAGAAGGGTATACGTTCA..................................................................... 26 0 1 1.00 1 1 0 0 0
........................................................................................CCGGTTACGCTATTAAAACAAGT............................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
..............................................................................GGTGGTTCGCCCGGTTACGCTAT...................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
................AACGCCTCCTAGGGGTAACCACTGTAT................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0
...................................................................................CTCGCCCGGTTACGCTATTAAAACAAGT............................................................................................................................................ 28 1 1 1.00 1 1 0 0 0
........................................................................................................................TTTAAAAGTTTTCGTAAGAGAAACAC......................................................................................................... 26 0 1 1.00 1 1 0 0 0
......CTAGCGGTTAAACGCCTCCTAGGGGTA.......................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.....................................................................................................................................................................AGAAGGGTATACGTTCATTTATCTTT............................................................ 26 0 1 1.00 1 1 0 0 0
.....................................................................................CGCCCGGTTACTCTATTAAAACAAGT............................................................................................................................................ 26 1 1 1.00 1 0 1 0 0
..............................................................................................................................................................CTTAAAAAGAAGGGTATACGTTCGT.................................................................... 25 1 1 1.00 1 1 0 0 0
..........................................................................................GGTTACGCTATTAAAACAAGTCTTT........................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
.........................................ATCCTTCGCCATTTTATGCATCTGCT........................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0
..............................................................................GGTGGTTCGCCCGGTTGCGCTAT...................................................................................................................................................... 23 1 1 1.00 1 1 0 0 0
.....................................................................................................................................GTAAGAGAAACACCACACGTAACTACT........................................................................................... 27 0 1 1.00 1 1 0 0 0
..................CGCCTCCTAGGGGTAACCACTGTAT................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................ACCTTCAATTATCTTTTATCT....................................................... 21 3 20 0.05 1 1 0 0 0
....................................................................................................................................CGTACGAGACACCCCACAC.................................................................................................... 19 3 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004954:4430751-4431001 + dwi_3760 CAATGAGATCGCCAATTTGCGGAGGATCCCCATTGGTGACATAGGAAGCGGTAAAATACGTAGACGAGATTGCAGACACCACCAAGCGGGCCAATGCGATAATTTTGTTCAGAAATTTGAAAATTTTCAAAAGCATTCTCTTTGTGGTGTGCATTGATGAATTTTTCTTCCCATATGCAAGTAAAT------------AGAAAATAGTTATTATTTATTTTTTTTTTAGTTTTTTAAAGTTAATAAAAAATAATTAAAATTTT
droMoj3 scaffold_6473:1823601-1823652 - TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGAATCAAAAAACGAGCAAAA----
dp5 Unknown_singleton_1308:1089-1128 - AG----------------------------------------------------------------------------------------------------TTTTGTTCAAAAATTAATAGAATTTCATAAGCTT---------------------------------------------------------------------------------------------------------------------------TTTC
droPer2 scaffold_10:1267317-1267379 - AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------ATAAAACAACAAAAATCTAATTTTTTTTTAATTTCTAAAA-ATAGCA-AAACTATTCAAAA----
droAna3 scaffold_13258:1184818-1184882 + AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATGATGATTATTTTTTATTTTTTTCGCAAATAATTATAAATAATAATTATTTGCAATTTT
droEle1 scf7180000491199:511821-511884 + AT---------------------------------------------------------------------------------------------GTGAAAAATTTATT--------TAAAAACTTTCAAAAACCTTTCACTAGCTTTGTGCCTGAATA----------------------------------------------------------------------------------------A----------ATTTT
droTak1 scf7180000414020:7624-7752 - TC------------------------------------------------------------------------------------------------AAAAATGTGTT-------ATAAAAATTTTTAAAAGTTAA----------------GTGTTAAATGTT-----TTAAATGTAAATAAATATAATATGCAAAAGAAAACAACCAAGTTACATTTTATTTTTAGGGTTTCAGTGTTAATATAA----------AACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
CAATGAGATCGCCAATTTGCGGAGGATCCCCATTGGTGACATAGGAAGCGGTAAAATACGTAGACGAGATTGCAGACACCACCAAGCGGGCCAATGCGATAATTTTGTTCAGAAATTTGAAAATTTTCAAAAGCATTCTCTTTGTGGTGTGCATTGATGAATTTTTCTTCCCATATGCAAGTAAAT------------AGAAAATAGTTATTATTTATTTTTTTTTTAGTTTTTTAAAGTTAATAAAAAATAATTAAAATTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................................CGAGATTGCAGACACCACCAAGC................................................................................................................................................................................2315.00505000
.............................................................................................................................TTCAAAAGCATTCTCTTTGTGGTG..................................................................................................................2413.00303000
....................................................................ATTGCAGACACCACCAAGCGGG.............................................................................................................................................................................2213.00303000
.............................................AAGCGGTAAAATACGTAGACGAG...................................................................................................................................................................................................2313.00303000
................................................................CGAGATTGCAGACACCACCAAGCGG..............................................................................................................................................................................2512.00202000
................TTGCGGAGGATCCCCATTGGTGACA..............................................................................................................................................................................................................................2512.00201010
................................................CGGTAAAATACGTAGACGAGATT................................................................................................................................................................................................2312.00202000
................................................CGGTAAAATACGTAGACGAGA..................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................................ATGCAAGTAAAT------------AGAAAATAGTTA.....................................................2411.00100010
...................................................TAAAATACGTAGACGAGATTGCAGACAC........................................................................................................................................................................................2811.00101000
...............................................................................................................................................GTGGTGTGCATTGATGAATTTTTCT...............................................................................................2511.00101000
................TTGCGGAGGATCCCCATTGGTGACAT.............................................................................................................................................................................................................................2611.00101000
..................................................................AGATTGCAGACACCACCAAGCGGGCC...........................................................................................................................................................................2611.00100001
.............................................AAGCGGTAAAATACGTAGACGAGAT.................................................................................................................................................................................................2511.00101000
.................TGCGGAGGATCCCCATTGGTGACATAG...........................................................................................................................................................................................................................2711.00101000
................TTGCGGAGGATCCCCATTGGTGACT..............................................................................................................................................................................................................................2511.00100010
.............................CCATTGGTGACATAGGAAG.......................................................................................................................................................................................................................1911.00101000
..............................................................................CCACCAAGCGGGCCAATGCGATAATTT..............................................................................................................................................................2711.00101000
.............AATTTGCGGAGGATCCCCATTGGTGA................................................................................................................................................................................................................................2611.00101000
................................................CGGTAAAATACGTAGACGAGATTGCA.............................................................................................................................................................................................2611.00101000
...........................................................GTAGACGAGATTGCAGACACCACC....................................................................................................................................................................................2411.00101000
...................................................................................................................................................TGTGCATTGATGAATTTTTCTTCCCA..........................................................................................2611.00101000
...............TTTGCGGAGGATCCCCATTGGTGA................................................................................................................................................................................................................................2411.00100010
..............................................AGCGGTAAAATACGTAGA.......................................................................................................................................................................................................1811.00101000
.........................ATCCCCATTGGTGACATAGGAAGCGG....................................................................................................................................................................................................................2611.00101000
......................AGGATCCCCATTGGTGACATAGGA.........................................................................................................................................................................................................................2411.00101000
.............................................AAGCGGTAAAATACGTAGACGAGA..................................................................................................................................................................................................2411.00101000
..............................................................................................................................................................................ATGCAAGTAAAT------------AGAAAATAGTTAT....................................................2511.00101000
................TTGCGGAGGATCCCCATTGGTGA................................................................................................................................................................................................................................2311.00100100
..............................................AGCGGTAAAATACGTAGACGAGA..................................................................................................................................................................................................2311.00101000
droMoj3
TT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGAATCAAAAAACGAGCAAAA----SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
dp5
AG----------------------------------------------------------------------------------------------------TTTTGTTCAAAAATTAATAGAATTTCATAAGCTT---------------------------------------------------------------------------------------------------------------------------TTTCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
AA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT------------ATAAAACAACAAAAATCTAATTTTTTTTTAATTTCTAAAA-ATAGCA-AAACTATTCAAAA----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAATGATGATTATTTTTTATTTTTTTCGCAAATAATTATAAATAATAATTATTTGCAATTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droEle1
AT---------------------------------------------------------------------------------------------GTGAAAAATTTATT--------TAAAAACTTTCAAAAACCTTTCACTAGCTTTGTGCCTGAATA----------------------------------------------------------------------------------------A----------ATTTTSizeHit CountTotal NormTotal
No Reads
droTak1
TC------------------------------------------------------------------------------------------------AAAAATGTGTT-------ATAAAAATTTTTAAAAGTTAA----------------GTGTTAAATGTT-----TTAAATGTAAATAAATATAATATGCAAAAGAAAACAACCAAGTTACATTTTATTTTTAGGGTTTCAGTGTTAATATAA----------AACTTSizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 08:08 AM