ID:

dwi_373

 Coordinate:

scf2_1100000004401:1080533-1080683 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-3.4 -3.3 -3.3

Flybase annnotation

CDS [Dwil\GK10356-cds]; exon [dwil_GLEANR_10292:5]; intron [Dwil\GK10356-in]

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+
mature
star
  1. dwi_373  scf2_1100000004401:1080619-1080638 +
  2. scf2_1100000004511:5430529-5430548 +
  3. scf2_1100000004511:9778448-9778467 +
  4. scf2_1100000004515:1546929-1546948 +
  5. scf2_1100000004515:3983596-3983615 +
  6. scf2_1100000004521:1812981-1813000 +
  7. scf2_1100000004521:7515162-7515181 +
  8. scf2_1100000004577:3352431-3352450 +
  9. scf2_1100000004585:1530621-1530640 +
  10. scf2_1100000004729:1775952-1775971 +
  11. scf2_1100000004822:2845152-2845171 +
  12. scf2_1100000004943:10108745-10108764 +
  13. scf2_1100000004943:12232799-12232818 +
  14. scf2_1100000004902:551852-551871 +
  15. scf2_1100000004902:6872616-6872635 +
  16. scf2_1100000004902:10035481-10035500 +
  17. scf2_1100000004909:9454442-9454461 +
  18. scf2_1100000004921:1940570-1940589 +
  19. scf2_1100000004921:2719166-2719185 +
  20. scf2_1100000004963:4327807-4327826 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTGTTTCATGCTAACCACATTTTATTGTTTCTCTTTTTATTGTAATTTTAATTGTTGTTTGTTTGTTATACCATAATATGAAACCCTCCACCGTCCCTCCCACTATCCACCGTCCCGACCACTCTTTTTTCTCTCTGTTTGTGTGCGTGTGTGTGTGTTCGTGTGTGTGGAAAACCATTTATTAATCAACCAAGATCCAGGCGGCCAGCTCAGTCATCATCTGTTGGACGTGCCGGCAATGTCAGTGGCG
***********************************************************************.....................................(((((...((..(((..................)))..)))).)))..*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V117
male body
.....................................................................................................................................................................................................................GTCAACAGCAGTTGGACGTG.................. 20 3 8 10.50 84 82 2 0 0
................................................................................................................................................................................................................GCTCAGTCATCATCTGTTGGACGT................... 24 0 1 2.00 2 0 1 0 1
..........................................................................................................................................................................................................................CATCTGTTGGACGTGCCGGC............. 20 0 1 1.00 1 0 0 0 1
.......................................................................................................................................................................................................................CATCATCTGTTGGACGTGCC................ 20 0 1 1.00 1 0 0 1 0
....................................................................................................................................................................................................................AGTCATCATCTGTTGGACGTGCCGGCA............ 27 0 1 1.00 1 0 0 1 0
.......................................................................CCATAATATGAAACCCTCCACC.............................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................................TGGACGTGCCGGCAATGTCAGTGGC. 25 0 1 1.00 1 0 1 0 0
................................................................................................................................................................................................................GCTCAGTCATCATCTGTTGGAC..................... 22 0 1 1.00 1 0 0 1 0
...........................................................................................................................................................................................................................ATCTGTTGGACGTGCCGGC............. 19 0 1 1.00 1 0 1 0 0
..................................................................................................................................................................................................................................GGACGTGCCGGCAATGTCAGTGGC. 24 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................................................GTCAACATCAGTTGGACGTGG................. 21 3 3 0.67 2 2 0 0 0
.......................................................................................................................................................................................................................CAACATCAGTTGGACGTG.................. 18 2 5 0.20 1 0 1 0 0
.......................................................................................................................................................................................................................CATCAGCAGTTGGACGTG.................. 18 2 9 0.11 1 1 0 0 0
..............................................................................................................................TTTTTCTATCTGTTTGTGT.......................................................................................................... 19 1 10 0.10 1 0 1 0 0
........................................................................................................................................TGTTTGTGTGCGTGTGTGTG............................................................................................... 20 0 20 0.05 1 0 0 0 1
.............................................................................................................................................................................................ACAAGGATCCAGGCGCCC............................................ 18 3 20 0.05 1 0 0 0 1

Anti-sense strand reads

AAACAAAGTACGATTGGTGTAAAATAACAAAGAGAAAAATAACATTAAAATTAACAACAAACAAACAATATGGTATTATACTTTGGGAGGTGGCAGGGAGGGTGATAGGTGGCAGGGCTGGTGAGAAAAAAGAGAGACAAACACACGCACACACACACAAGCACACACACCTTTTGGTAAATAATTAGTTGGTTCTAGGTCCGCCGGTCGAGTCAGTAGTAGACAACCTGCACGGCCGTTACAGTCACCGC
***********************************************************************************************.....................................(((((...((..(((..................)))..)))).)))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V117
male body		 M020
head
 V118
embryo
 V119
head
................................................................................CTATGGGGGCTGGCAGGGA........................................................................................................................................................ 19 3 4 36.25 145 104 37 2 1 1
...............................................................................ACTATGGGGGCTGGCAGGGA........................................................................................................................................................ 20 3 2 17.50 35 32 3 0 0 0
...............................................................................ACTACGGGAGCTGGCAGGGA........................................................................................................................................................ 20 3 3 15.33 46 45 1 0 0 0
................................................................................CTACGGGAGCTGGCAGGGA........................................................................................................................................................ 19 3 10 10.90 109 105 2 0 2 0
................................................................................CTTCGGGGGCTGGCAGGGA........................................................................................................................................................ 19 3 9 3.89 35 34 1 0 0 0
...............................................................................ACTTCGGGGGCTGGCAGGGA........................................................................................................................................................ 20 3 4 2.75 11 11 0 0 0 0
..........................................................................................................................................................................................AGTTTGTTCTAGGTACGCC.............................................. 19 2 1 2.00 2 2 0 0 0 0
...............................................................................ACTACGGGGGGTGGCAGGGA........................................................................................................................................................ 20 3 8 1.75 14 11 3 0 0 0
................................................................................CTATGGGGGCTGGCAGGG......................................................................................................................................................... 18 3 20 1.05 21 16 5 0 0 0
...............................................................................ACTGCGGGAGCTGGCAGGGA........................................................................................................................................................ 20 3 1 1.00 1 1 0 0 0 0
...............................................................................ACTATGGGGGCTGGCAGGG......................................................................................................................................................... 19 3 6 1.00 6 5 1 0 0 0
...............................................................................ACTTTGGGGGCTGGCAGGGAT....................................................................................................................................................... 21 3 1 1.00 1 1 0 0 0 0
................................................................................CTATGGGAGCTGGCAGGGA........................................................................................................................................................ 19 2 2 0.50 1 1 0 0 0 0
..........................................................................................................................................................................................AGTTTGTTCTAGGTACGC............................................... 18 2 5 0.20 1 1 0 0 0 0
.............................................................................................TAGGGAGGGGGTTAGGTGGCA......................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0
.........................................................................................................................................................................................AAGTTTGTTCTAGGTACGCC.............................................. 20 3 10 0.20 2 2 0 0 0 0
........................................................................................................................GTGAGAAAAAAGATAGACTA............................................................................................................... 20 2 9 0.11 1 1 0 0 0 0
................................................................................CTTTGGCAGTTGGTAGGGA........................................................................................................................................................ 19 3 10 0.10 1 1 0 0 0 0
.........................................................................................................TTGGGGGCAGGTCTGGTGA............................................................................................................................... 19 3 14 0.07 1 0 1 0 0 0
...................................................................................TGGGAGGTGGCGTGGAGGC..................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0
............................................................................................................................................................................................................CGGTCGAGTCAGTAGTCAG............................ 19 3 20 0.05 1 0 1 0 0 0
...............................................................................ACTACGGGAGCTGGCAGGG......................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0
.................................................................................TCTGGGGGCTGGCAGGGA........................................................................................................................................................ 18 3 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................GTTTGTTCTAGGTACGCC.............................................. 18 2 20 0.05 1 1 0 0 0 0
..................................................................................TTCGGAGGACGCAGGGAGG...................................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0
..ACAAAGTACGAGTGGGATA...................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004401:1080483-1080733 + dwi_373 TTTGTTTCATGCTAACC--------------------------------ACATTTTATTGTTTCTCTTTTTA-TTGTAA----T--TTTAATTG--TTGTTTGT-TT----GTTATAC----CATAA-TATGA-------AACC-C-TC---C---------------ACCG------------------------------------------------------------------------------------------------------------------------------TCCCTC-----------------------------------------------------------------------------------------------CCA-C--------TAT---------------------CCACCG----TCCCGACCACT---CTTTTTT--CTCTCTG--T----TTGTG--TGCGTGTGT--GTGT--GTTCGTGTG----------------TGTG-GAAAACCATTTATTAATCAACCAAGATCCAGGCGGCCAGCTCAGTCATCATCTGTTGGACGTGCCGGCAATGTCAGTGGCG
droVir3 scaffold_12726:667638-667938 + dvi_1832 TC--------------------------------------------------------------------------------------------------------------TTGTAC----ATGTA-CCTGC-------ACCCGTATC-------CGTTCTTGTT-----------------T----CTCCCAA---------AT--TCACAACA----------ATTCCCACGC-TAT-------ACTCCTACTCCACTTCTCTCTAT---CTCTCTCACACAATCTCATCTCC--TCCC-------------------GTCTATCCCTTCTAT--------------------------CTGTTA----------------------CT------CCCACT--------CCGTCTCACTATTTCTGTGCGCGCG-------C---------------G---T--------GTG--T----GTGTGTGTG----TGTGTG--TGTGTGCGT--GTGCG--TGTGTCTGTGCGTGTGAAAATCATGTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCCGG---ACGGGCCGGAAATGCTGGCGGTG
droMoj3 scaffold_6308:2395806-2396066 + dmo_438 TTC------------------------------------CTTTC----------------------------------------------------------------------------------A-CAA-----------------------------------------------------------------------------TCAAAACA----------ATTCCTATGC-TATTTCGTGCATTCCCACTCAACGTCTACCTCC---CCCACA-----------------C-TCATAACCCCCCCTACTTCCTTTGTCTATCCCTACTTC---------------------------------CTTCCTTGCATTCCCCCCTCTCT------CTCATT--------CTGT--CACTG-----------------------------------------T----CT--CTG--T----GTGTG--CG--TGCGTGTG--TGTGTGTGTA------------------TGTGCGGAAATCATGTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCCGG---ACGAGGCGGAAATGCTGGCGGTG
droGri2 scaffold_14853:4417312-4417644 + TTTTATTC-----------------------------CTGTTTGTCGTCACGTTTGTT----------------TGTTT----G--T-TGTTGTTTCTGTT----------CTTGTAC----ATGAA-CATC------------------------CGTTCTTGTT-----------------C----CTCCTA--------------TCACAATAACTCCCCAC------CACGCCCAT-------TCTCCCGCT----CCC------------C-------------------------GTTTTA------------------TCTCTCACTCTCTCTC--CCTATTTGTCAAAATTTCAATGTTACCCCCCCTCACCCC-----TCACACCCTCTGT----------------------TC------------------------------CACCAAC---T----AT--CTTTAT----GTGTG--TG----TGTGTG--TGTGTGTGTGTG--TG--TGTATCTGTGCGTGTGCAAATCATATATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCGGG---ACGTGGCGGAAATGCAGGCGGTG
dp5 XL_group1e:2770141-2770449 + dps_2645 TCTCGCCC--------------TCGAT------------------------GTTCGATTGTT--------TGATTGTTT----G--TTCGATG----------------------TAT----T---------------------------------CTTTGTTGTT-----------------C----CTCCCCGCCTCCCCTCCTACCC--AAAAACCCCTTAAC----------------------------------CTGTCCCACT---CCCACT-----------------C-CCACTCCCAC-------------------TCCTACTCTCTCTCTCTC------------------TGTCTCCCTCCCTGGCTTC-----TGTCTCTCTCTCT----------------------AT------------------------------CTCTGTA---T----AT--CTA--T----GTGTGTGTG----CGTGTG--TGCGTGCGT--GCGTGCGTGTGTGTGTGTGTGTGTAAACCATTTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCGTCATCCGG---ACGCGGCGGAAACGCCAGTGGCG
droPer2 scaffold_18:1667140-1667433 + dpe_921 CTCGA---------------------T------------------------GTTCGTTTGTT--------TGATTGTTT----G--TTCGATG----------------------TAT----T---------------------------------CTTTGTTGTT-----------------C----CTCCC----------------C--AAAAACCCCTTAAC----------------------------------CTGTCCCACT---CCCACT-----------------C-CCACTCCCACTCCCACTCCC-------ACTCCTACTCTCTCTC--TC------------------TGTCTCCCTCCCTGGCTTC-----TGTCTCTCTCTCT----------------------AT------------------------------CTCTGTA---T----AT--CTA--T----GTGTGTGTG----CGTGTG--TGTGTGCGT--GCGTG--CGTGTGTGTGTGTGTGTAAACCATTTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCGTCATCCGG---ACGCGGCGGAAACGCCAGTGGCG
droAna3 scaffold_12613:158785-159026 - dan_350 CTT--------------------AAAT------------GTTT---GTTTTGTTTGATCGTT--------TGTTTGTTT----G--TTTGTTCCTAT------------------TAA----CTCCC-CTC---------------------C---------------C----------------------------------------------------TCCAC----------------------------------CTGCCGCCCTCTGCCCAC------------------TGCC-TTC-----------------------------------------------------------------------------------------------CCA-CCT------C-------CTCTCTCTCCAC--CCC-------CATCC------CCCAAC---T----CT--CTA--T----GTGTG--TG--TGTGTGTG--CGTGTGT--GTG----------------TTTGGGAATATCGTGTATTAATCAAAAAAGATCCAGGCGGCCCACGCAATCCTCGACGGCTGCCCGCACGGCTAACCCACCTGGAG
droBip1 scf7180000396602:3721-3975 - TTCCA----TGATGTTCCCCCTTAA------------ATGTTTGTTATTTTGTTTGATCGTT--------TGTTTGTTT----G--TT----CCTAT------------------TAA----CTTTC-CCCCT----------------------------------------------------------------------------------------TCGCC----------------------------------CCGCTGCCTTCTTCCAAC------------------CGCCACTC-----------------------------------------------------------------------------------------------CCA-CCTCCTCACT-------CTTATTCTCCACACCCC-------C---------------C---TCTCCCT--CTA--T----GTGTG----------TGTG--CGTGTGTGTG------------------TTTGGGAATATCGTGTATTAATCAAAAAAGATCCAGGCGGCCCACGCAATCCTCGACGGCTGCCCGCACGGCAAACCCACCTGGAG
droKik1 scf7180000302344:1112735-1112964 - GTT-------------------------------CGATTGTTTGATGGTTCGTTT---------------TGTTCGATT----G--TTCGATTATTTTGTTTGT-TTGT---TTGTAATCCTTTCTA-ACTCC-------AAAT-AAAC---C---------------AACAA---CCCTCA-------CCCC----------------------------------------------C----------------------------------------------------------TCCCT-------------------TC----------------------------------------------------------------------------CAAC--------CCT---------------------TCACCCTT---GT--------CTAC---T----CC------------------------------C--TTTGTGTGTGTG----------------TGTG-GAAAATCGTGTATTAATCAACCAAGATCCAGGCGGCCCACGCAATCCTCGTCGGCTGCCCGCTCCACCAATCCGGCGGGCG
droFic1 scf7180000454072:88396-88582 - T------------------------------------------------------------------------------------------------TGTGTGT-CT----GTTGTAC----CTGCA-CCCCA-------ACCC---GC---C---------------ACCCA---TCTCCCGT----CTCCCA---------------------------------------------T-------C------------CTC------------C----------------------------------------------------------------------------------------------------------------------------CAAC--------CCT---------------------CC----------------------C---C----CT--CTG--T----GTATG--TG--TG--TGTG--CGTGTGTGTGTG----------------TGCGGCAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGGTCGGGAAACCCCCCGGGAG
droEle1 scf7180000490996:411615-411826 + A------------------------------------TTGTTTGTTGTTTTGTTTG------------------TGTTT----G--TTTGATGATTTTGTTTGT-TT----GTTGTAT----TTGCCAACCCC------AAACC------CCG---------------A---A---CCCCCC-T----CCCCCA---------------------------------------------T-------T------------TTC------------A-----------------------------------------------------------------------------------------------------------------------------AAA--------CCG---------------------CC-----------------------------------CT--------GTTTG--TG--TG--TGCG--TGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAATCCCCCGGGGG
droRho1 scf7180000779337:432099-432346 + T----------------------AAATGTTTGTTCGATTGTTTGCTGTTTCGTTTG----------------TTTGTT-----GATTCTGATGATTTTGTTTGTTTT----GTTGTAT----TTGCA-------------AATC-CAACCTCG-----------CTCCCCCTA---CCCCCT-------CCCCA---------------------------------------------C-------TCTTCCATT----CCC------------C-----------------------------------------------------------------------------------------------------------------------------ACT--------TTCC----------------CT--TC----------------------C---C----CT--CTC--T----GTGTG--TG----CGC--GTGT--GTGTGTGTG----------------TGTG-GGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGCAACCC-CCGGGGG
droBia1 scf7180000302126:1969970-1970192 - A------------------------------------TTGTTTGTTGATTCGTTTGTTTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TTGTTTGTTGTAT----TTGCA-CTTTA-------AACC-C--C---C-ACC-----------C---ATTACCCCCC-ACCCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCA-----T-------A----AT--CTC--T----GTGTG----------TGCG--CGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGCAATCCCTCGGGAG
droTak1 scf7180000415360:182148-182391 + A------------------------------------TTGTTTGTTGATTCGTTTGT--------------------TT----G--TTTGATGATTTTGTTTGT-TT----GTTGTAT----TTGCA-CCTTAAACCCCAAAAC------CCAAACC-----------C---ATTTCCCTCT-------CCCA----------------------------------------------C----------------------------------------------------------CCCGT----------------------------------------------------------------------------------------------------------CCCC-------ATATCTCTCCCCCCCCT-------C---C------TC--TC---TCT--CT--CTC--T----CTATC--TG----TGTGTG--CGTGTGT--GTG----------------TGTG-GGGAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGAAATCCCTCGGGAG
droEug1 scf7180000408825:13882-14150 - TCCCT-----------------TAAATGTTTGTTCGATTGTTTGTTGATTCGTTTG----------------TATGTTT----G--ATTGATGATTTTGTTGGT-TT----GTTGTAT----TTGCA-CCCTC-------AA--------------------------------------------------------------TT--ACC----------TAACCAT---CTCGCCCAA-------T------------CCC------------C-AA-----------------A-TCCCTC------------------------------------------------------------------------------------------------CAAC--------CCT---------------------TACCCCTT---CCCG-CCCTC---TTTATAT--CTCTCTG--T----GTCTG--TG----CGTGTG--TGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATACATCAAGATCCAGGCGGCCAAACCAATCCTCGTCTGCCTCCCGATCGGGAAATCCACCGGGAG
dm3 chrX:3227994-3228233 + A------------------------------------TTGTTTGTTGATTCGTTTGTCTGTTTGTTTGTTTGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CCCCCC-------GCCCA---------------------------------------------T-------T------------TTC------------C----------------------------------------------------------------------------------------------------------------------------CAAT--------CCCC--------------------------------------------C---TCT--CT--CTC--T----GTGTG--TG--TGTGT--GTGT--GTGTGCGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCGTCGTCGGCCTCGCGATCAGGAAATCCACCAGGAG
droSim2 x:2981794-2982024 + dsi_30725 TC---------------------------------GATTGTTTGTTGATTCGTTTGTCTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CC-CCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAT--------CCCC--------------------------------------------C---T----CT--CTA--T----GTATG--TG--CG--CGCG--TGTGTGTGTGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCCAGGAG
droSec2 scaffold_10:2933694-2933924 + TC---------------------------------GATTGTTTGTTGATTCGTTTGTCTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CC-CCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAT--------CCCC--------------------------------------------C---T----CT--CTA--T----GTGTG--TG--CG--CGCG--TGTGTGTGTGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCCAGGAG
droYak3 X:5154292-5154521 - A------------------------------------TTGTTTGTTGATTCGTTTGT----T--------TTTTTGTTT----G--TTTGATGATTATGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AAAC-CAAC---C---------------GCCTA---CCTCCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAA--------CCCC----------------------------------------TAACC---TCT--CT--CTG--T----GTGCG--TG----TGCGTG--CGTGTGTGTG------------------TGTGTGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCAAGGAG
droEre2 scaffold_4690:639176-639442 + A------------------------------------TTGTTTGTTGATTCGTTTGTTTGTTTGCTGATTCGTTTGTTTGTTTG--TTT---GATTCTGTTTGT-TT----GTTGTAT----CTGCA-CCCCG-------AAACCAAAC---C---------------GCCCA---CCTCCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AATACCCCCACC-------CTAACACTCCCCCTCCC-------C-----------C-------GAT--CT--CTG--TTGTGGTGTG--CG--TGTGC--GTGC--GTGTGTG------------------CGTGTGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCATCGCGATCGGGCAACCCCCCCGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TTTGTTTCATGCTAACC--------------------------------ACATTTTATTGTTTCTCTTTTTA-TTGTAA----T--TTTAATTG--TTGTTTGT-TT----GTTATAC----CATAA-TATGA-------AACC-C-TC---C---------------ACCG------------------------------------------------------------------------------------------------------------------------------TCCCTC-----------------------------------------------------------------------------------------------CCA-C--------TAT---------------------CCACCG----TCCCGACCACT---CTTTTTT--CTCTCTG--T----TTGTG--TGCGTGTGT--GTGT--GTTCGTGTG----------------TGTG-GAAAACCATTTATTAATCAACCAAGATCCAGGCGGCCAGCTCAGTCATCATCTGTTGGACGTGCCGGCAATGTCAGTGGCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGTCATCATCTGTTGGACGT...................2412.00200110
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCTGTTGGACGTGCCGGC.............2011.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCATCTGTTGGACGTGCC................2011.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTCATCATCTGTTGGACGTGCCGGCA............2711.00110000
.....................................................................................................................C----CATAA-TATGA-------AACC-C-TC---C---------------ACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGTGCCGGCAATGTCAGTGGC.2511.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCAGTCATCATCTGTTGGAC.....................2211.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTTGGACGTGCCGGC.............1911.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGTGCCGGCAATGTCAGTGGC.2411.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--T----TTGTG--TGCGTGTGT--GTG..................................................................................................................20200.05100100
droVir3
TC--------------------------------------------------------------------------------------------------------------TTGTAC----ATGTA-CCTGC-------ACCCGTATC-------CGTTCTTGTT-----------------T----CTCCCAA---------AT--TCACAACA----------ATTCCCACGC-TAT-------ACTCCTACTCCACTTCTCTCTAT---CTCTCTCACACAATCTCATCTCC--TCCC-------------------GTCTATCCCTTCTAT--------------------------CTGTTA----------------------CT------CCCACT--------CCGTCTCACTATTTCTGTGCGCGCG-------C---------------G---T--------GTG--T----GTGTGTGTG----TGTGTG--TGTGTGCGT--GTGCG--TGTGTCTGTGCGTGTGAAAATCATGTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCCGG---ACGGGCCGGAAATGCTGGCGGTGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................................................................AT--------------------------CTGTTA----------------------CT------CCCACT--------CCGTCTCACT....................................................................................................................................................................................................2611.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................TGTAC----ATGTA-CCTGC-------ACCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--TGTGTGCGT--GTGCG--................................................................................................18200.102000000000000000000000000000010100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG-------C---------------G---T--------GTG--T----GTGTGTG................................................................................................................................18200.051000000010000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTG--TGTGTGCGT--GTGCG--................................................................................................20200.051000000000000000000001000000000000000000000000000000000000000000
droMoj3
TTC------------------------------------CTTTC----------------------------------------------------------------------------------A-CAA-----------------------------------------------------------------------------TCAAAACA----------ATTCCTATGC-TATTTCGTGCATTCCCACTCAACGTCTACCTCC---CCCACA-----------------C-TCATAACCCCCCCTACTTCCTTTGTCTATCCCTACTTC---------------------------------CTTCCTTGCATTCCCCCCTCTCT------CTCATT--------CTGT--CACTG-----------------------------------------T----CT--CTG--T----GTGTG--CG--TGCGTGTG--TGTGTGTGTA------------------TGTGCGGAAATCATGTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCCGG---ACGAGGCGGAAATGCTGGCGGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATGTATTAATCAAACAAGATCCAGGC................................................2911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGCCAGCTCAATCAT.................................2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCATCATCCGG---ACGAGGCG...............2111.001100000
droGri2
TTTTATTC-----------------------------CTGTTTGTCGTCACGTTTGTT----------------TGTTT----G--T-TGTTGTTTCTGTT----------CTTGTAC----ATGAA-CATC------------------------CGTTCTTGTT-----------------C----CTCCTA--------------TCACAATAACTCCCCAC------CACGCCCAT-------TCTCCCGCT----CCC------------C-------------------------GTTTTA------------------TCTCTCACTCTCTCTC--CCTATTTGTCAAAATTTCAATGTTACCCCCCCTCACCCC-----TCACACCCTCTGT----------------------TC------------------------------CACCAAC---T----AT--CTTTAT----GTGTG--TG----TGTGTG--TGTGTGTGTGTG--TG--TGTATCTGTGCGTGTGCAAATCATATATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCATCATCGGG---ACGTGGCGGAAATGCAGGCGGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TCTCGCCC--------------TCGAT------------------------GTTCGATTGTT--------TGATTGTTT----G--TTCGATG----------------------TAT----T---------------------------------CTTTGTTGTT-----------------C----CTCCCCGCCTCCCCTCCTACCC--AAAAACCCCTTAAC----------------------------------CTGTCCCACT---CCCACT-----------------C-CCACTCCCAC-------------------TCCTACTCTCTCTCTCTC------------------TGTCTCCCTCCCTGGCTTC-----TGTCTCTCTCTCT----------------------AT------------------------------CTCTGTA---T----AT--CTA--T----GTGTGTGTG----CGTGTG--TGCGTGCGT--GCGTGCGTGTGTGTGTGTGTGTGTAAACCATTTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCGTCATCCGG---ACGCGGCGGAAACGCCAGTGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGGCCAGCTCAATCGTC................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCCAGCTCAATCGTCATCCGG---A......................2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGCGGAAACGCCAGTGGC.2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................CTCTCTCTCTCTC------------------TGTCTCC........................................................................................................................................................................................................................................................20200.0510001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTGTGTGTGTGTGTAA.............................................................................20200.0510100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GCGTGCGTGTGTGTGTGTGTGT.................................................................................23200.0510001000000
droPer2
CTCGA---------------------T------------------------GTTCGTTTGTT--------TGATTGTTT----G--TTCGATG----------------------TAT----T---------------------------------CTTTGTTGTT-----------------C----CTCCC----------------C--AAAAACCCCTTAAC----------------------------------CTGTCCCACT---CCCACT-----------------C-CCACTCCCACTCCCACTCCC-------ACTCCTACTCTCTCTC--TC------------------TGTCTCCCTCCCTGGCTTC-----TGTCTCTCTCTCT----------------------AT------------------------------CTCTGTA---T----AT--CTA--T----GTGTGTGTG----CGTGTG--TGTGTGCGT--GCGTG--CGTGTGTGTGTGTGTGTAAACCATTTATTAATCAAACAAGATCCAGGCGGCCAGCTCAATCGTCATCCGG---ACGCGGCGGAAACGCCAGTGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCCAGCTCAATCGTCATCCG...........................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGG---ACGCGGCGGAAACGC........2111.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAGGCGGCCAGCTCAATCGT.................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA---T----AT--CTA--T----GTGTGTGT...............................................................................................................................18100.101001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGCGT--GCGTG--CGTGTG..........................................................................................20150.071000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GTGTGTGTG----CGTGTG--TGTG..............................................................................................................20200.051010000
droAna3
CTT--------------------AAAT------------GTTT---GTTTTGTTTGATCGTT--------TGTTTGTTT----G--TTTGTTCCTAT------------------TAA----CTCCC-CTC---------------------C---------------C----------------------------------------------------TCCAC----------------------------------CTGCCGCCCTCTGCCCAC------------------TGCC-TTC-----------------------------------------------------------------------------------------------CCA-CCT------C-------CTCTCTCTCCAC--CCC-------CATCC------CCCAAC---T----CT--CTA--T----GTGTG--TG--TGTGTGTG--CGTGTGT--GTG----------------TTTGGGAATATCGTGTATTAATCAAAAAAGATCCAGGCGGCCCACGCAATCCTCGACGGCTGCCCGCACGGCTAACCCACCTGGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGACGGCTGCCCGCACGGC..............2211.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACGCAATCCTCGACGGCTGCC......................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCCACGCAATCCTCGACGG...........................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---T----CT--CTA--T----GTGTG--TG--TGTGTG......................................................................................................................2190.111100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--TG--TGTGTGTG--CGTGTGT--G........................................................................................................22140.071000001
droBip1
TTCCA----TGATGTTCCCCCTTAA------------ATGTTTGTTATTTTGTTTGATCGTT--------TGTTTGTTT----G--TT----CCTAT------------------TAA----CTTTC-CCCCT----------------------------------------------------------------------------------------TCGCC----------------------------------CCGCTGCCTTCTTCCAAC------------------CGCCACTC-----------------------------------------------------------------------------------------------CCA-CCTCCTCACT-------CTTATTCTCCACACCCC-------C---------------C---TCTCCCT--CTA--T----GTGTG----------TGTG--CGTGTGTGTG------------------TTTGGGAATATCGTGTATTAATCAAAAAAGATCCAGGCGGCCCACGCAATCCTCGACGGCTGCCCGCACGGCAAACCCACCTGGAGSizeHit CountTotal NormTotal
No Reads
droKik1
GTT-------------------------------CGATTGTTTGATGGTTCGTTT---------------TGTTCGATT----G--TTCGATTATTTTGTTTGT-TTGT---TTGTAATCCTTTCTA-ACTCC-------AAAT-AAAC---C---------------AACAA---CCCTCA-------CCCC----------------------------------------------C----------------------------------------------------------TCCCT-------------------TC----------------------------------------------------------------------------CAAC--------CCT---------------------TCACCCTT---GT--------CTAC---T----CC------------------------------C--TTTGTGTGTGTG----------------TGTG-GAAAATCGTGTATTAATCAACCAAGATCCAGGCGGCCCACGCAATCCTCGTCGGCTGCCCGCTCCACCAATCCGGCGGGCGSizeHit CountTotal NormTotal
No Reads
droFic1
T------------------------------------------------------------------------------------------------TGTGTGT-CT----GTTGTAC----CTGCA-CCCCA-------ACCC---GC---C---------------ACCCA---TCTCCCGT----CTCCCA---------------------------------------------T-------C------------CTC------------C----------------------------------------------------------------------------------------------------------------------------CAAC--------CCT---------------------CC----------------------C---C----CT--CTG--T----GTATG--TG--TG--TGTG--CGTGTGTGTGTG----------------TGCGGCAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGGTCGGGAAACCCCCCGGGAGSizeHit CountTotal NormTotal
No Reads
droEle1
A------------------------------------TTGTTTGTTGTTTTGTTTG------------------TGTTT----G--TTTGATGATTTTGTTTGT-TT----GTTGTAT----TTGCCAACCCC------AAACC------CCG---------------A---A---CCCCCC-T----CCCCCA---------------------------------------------T-------T------------TTC------------A-----------------------------------------------------------------------------------------------------------------------------AAA--------CCG---------------------CC-----------------------------------CT--------GTTTG--TG--TG--TGCG--TGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAATCCCCCGGGGGSizeHit CountTotal NormTotal
No Reads
droRho1
T----------------------AAATGTTTGTTCGATTGTTTGCTGTTTCGTTTG----------------TTTGTT-----GATTCTGATGATTTTGTTTGTTTT----GTTGTAT----TTGCA-------------AATC-CAACCTCG-----------CTCCCCCTA---CCCCCT-------CCCCA---------------------------------------------C-------TCTTCCATT----CCC------------C-----------------------------------------------------------------------------------------------------------------------------ACT--------TTCC----------------CT--TC----------------------C---C----CT--CTC--T----GTGTG--TG----CGC--GTGT--GTGTGTGTG----------------TGTG-GGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGCAACCC-CCGGGGGSizeHit CountTotal NormTotal
No Reads
droBia1
A------------------------------------TTGTTTGTTGATTCGTTTGTTTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TTGTTTGTTGTAT----TTGCA-CTTTA-------AACC-C--C---C-ACC-----------C---ATTACCCCCC-ACCCCCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCCA-----T-------A----AT--CTC--T----GTGTG----------TGCG--CGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGCAATCCCTCGGGAGSizeHit CountTotal NormTotal
No Reads
droTak1
A------------------------------------TTGTTTGTTGATTCGTTTGT--------------------TT----G--TTTGATGATTTTGTTTGT-TT----GTTGTAT----TTGCA-CCTTAAACCCCAAAAC------CCAAACC-----------C---ATTTCCCTCT-------CCCA----------------------------------------------C----------------------------------------------------------CCCGT----------------------------------------------------------------------------------------------------------CCCC-------ATATCTCTCCCCCCCCT-------C---C------TC--TC---TCT--CT--CTC--T----CTATC--TG----TGTGTG--CGTGTGT--GTG----------------TGTG-GGGAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCCCGATCGGGAAATCCCTCGGGAGSizeHit CountTotal NormTotal
No Reads
droEug1
TCCCT-----------------TAAATGTTTGTTCGATTGTTTGTTGATTCGTTTG----------------TATGTTT----G--ATTGATGATTTTGTTGGT-TT----GTTGTAT----TTGCA-CCCTC-------AA--------------------------------------------------------------TT--ACC----------TAACCAT---CTCGCCCAA-------T------------CCC------------C-AA-----------------A-TCCCTC------------------------------------------------------------------------------------------------CAAC--------CCT---------------------TACCCCTT---CCCG-CCCTC---TTTATAT--CTCTCTG--T----GTCTG--TG----CGTGTG--TGTGTGTGTG------------------TGTGGGGAAACTGTGTATTAATACATCAAGATCCAGGCGGCCAAACCAATCCTCGTCTGCCTCCCGATCGGGAAATCCACCGGGAGSizeHit CountTotal NormTotal
No Reads
dm3
A------------------------------------TTGTTTGTTGATTCGTTTGTCTGTTTGTTTGTTTGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CCCCCC-------GCCCA---------------------------------------------T-------T------------TTC------------C----------------------------------------------------------------------------------------------------------------------------CAAT--------CCCC--------------------------------------------C---TCT--CT--CTC--T----GTGTG--TG--TGTGT--GTGT--GTGTGCGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCGTCGTCGGCCTCGCGATCAGGAAATCCACCAGGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAATCGTCGTCGGCCTCGCGATC.................2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTCGTCGGCCTCGCGATC.................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTGTGCGTG----------------TGTG-GAAAACTG.........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCGGCCCAACCAATCGTCGTCGGCC.........................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCGTCGGCCTCGCGATCAGGA.............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCGTCGGCCTCGCGATCAGG..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCGTCGGCCTCGCGATCAGGAAA...........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................TGTAT----CTGCA-CCCCG-------AAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGCGGCCCAACCAATCGTCGT..............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACCAATCGTCGTCGGCC.........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTCGTCGGCCTCGCGATCAGGAA............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................GCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CCCCCC-------.............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATCGTCGTCGGCC.........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAATCCATCAAGATCCAGGCGGCCC...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCTCGCGATCAGGAAATCCACCAGGA.2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGTCGTCGGCCTCGCGATCA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGCGATCAGGAAATCCACCAGGA.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCGTCGTCGGCCTCGCGATCAG...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGTG----------------TGTG-GAAAACTGTGT......................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAACCAATCGTCGTCG............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCGGCCTCGCGATCAG...............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGTATTAATCCATCAAG........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
....................................................................................................................AT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CCCCCC-------GCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGGAAATCCACCAGGA.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................TGTTT----G--TTTGATGATTTTGTTCGT-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGATCAGGAAATCCACCAGGA.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................TTGTTGATTCGTTTGTCTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGTCGGCCTCGCGATCAGG..............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................TGATTTTGTTCGT-TT----GTTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGGCGGCCCAACCAATC...................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCGTG----------------TGTG-GAAAA............................................................................1841.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CCC--------------------------------------------C---TCT--CT--CTC--T----GTGTG--TG--TGTGT--.....................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTGTGCGTG----------------TGTG-GA...............................................................................1860.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGT--GTGTGCGTG----------------TGTG-GAA..............................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT--GTGT--GTGTGCGTG----------------TGTG-GA...............................................................................2160.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000
..................................................................TGTTTGTTTGTTT----G--TTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.2010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TG--TGTGT--GTGT--GTGTG..........................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000
.........................................................CTGTTTGTTTGTTTGTTTGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--TG--TGTGT--GTGT--GTGTGC.........................................................................................................21200.2040000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--GTGTGCGTG----------------TGTG-G................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000000000000000000000000000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTG--TG--TGTGT--GTGT--GTGTG..........................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----GTGTG--TG--TGTGT--GTGT--GTGT...........................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TG--TGTGT--GTGT--GTGTGCGTG----------------......................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000010000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CT--CTC--T----GTGTG--TG--TGTGT--G....................................................................................................................21180.1120000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT--CT--CTC--T----GTGTG--TG--TGTGT--.....................................................................................................................21180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGT--GTGT--GTGTGCGTG----------------TGT...................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--GTGT--GTGTGCGTG----------------TGTG-.................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TG--TGTGT--GTGT--GTGTGCGTG----------------TGT...................................................................................24200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CT--CTC--T----GTGTG--TG--TGTG........................................................................................................................19200.1020000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TG--TGTGT--GTGT--GTGTGCG........................................................................................................20200.1020000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT--GTGT--GTGTGCGTG----------------TGT...................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC--T----GTGTG--TG--TGTGT--GTG..................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TG--TGTGT--GTGT--GTGTGCGT.......................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--TGTGT--GTGT--GTGTGCGTG----------------T.....................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--CTC--T----GTGTG--TG--TGTGT--GTGT--G..............................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGT--GTGT--GTGTGCGTG----------------TGTG-.................................................................................21200.1020000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................GTCTGTTTGTTTGTTTGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19110.0910000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC--T----GTGTG--TG--TGTGT--GTGT--GTGTGC.........................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droSim2
TC---------------------------------GATTGTTTGTTGATTCGTTTGTCTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CC-CCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAT--------CCCC--------------------------------------------C---T----CT--CTA--T----GTATG--TG--CG--CGCG--TGTGTGTGTGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCCAGGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTCGTCGGCCTCGCGATC.................2211.00101000000000000000
...............................................................................................TTTGTTCGT-TT----GTTGTAT----CTGCA-CCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATCCTCGTCGGC..........................1811.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCCAACCAATCCTCGTCGGCCTCGCG....................2911.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATCCTCGTCGGCCTCGCGATC.................2711.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTCGTCGGCCTCGCGATCGG...............2311.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG--TGTGTGTGTGTG----------------TGTG-GAA..............................................................................2311.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAAGATCCAGGCGGCCCAACCAA.....................................2511.00100000000000010000
...................................................GTTTGTCTGTT--------TGTTTGTTT----G--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2150.20100000000001000000
droSec2
TC---------------------------------GATTGTTTGTTGATTCGTTTGTCTGTT--------TGTTTGTTT----G--TTTGATGATTTTGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AACC-CAAC---C---------------GCCTA---CC-CCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAT--------CCCC--------------------------------------------C---T----CT--CTA--T----GTGTG--TG--CG--CGCG--TGTGTGTGTGTG----------------TGTG-GAAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCCAGGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATCCTCGTCGGCCTCGC.....................2311.0010010
droYak3
A------------------------------------TTGTTTGTTGATTCGTTTGT----T--------TTTTTGTTT----G--TTTGATGATTATGTTCGT-TT----GTTGTAT----CTGCA-CCCCG-------AAAC-CAAC---C---------------GCCTA---CCTCCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AAA--------CCCC----------------------------------------TAACC---TCT--CT--CTG--T----GTGCG--TG----TGCGTG--CGTGTGTGTG------------------TGTGTGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCCTCGCGATCGGGAAACCCCCAAGGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTCGTCGGCCTCGCGATCGG...............2411.00100000010000
droEre2
A------------------------------------TTGTTTGTTGATTCGTTTGTTTGTTTGCTGATTCGTTTGTTTGTTTG--TTT---GATTCTGTTTGT-TT----GTTGTAT----CTGCA-CCCCG-------AAACCAAAC---C---------------GCCCA---CCTCCC-------GCCCA---------------------------------------------T-------T------------TCC------------C-----------------------------------------------------------------------------------------------------------------------------AATACCCCCACC-------CTAACACTCCCCCTCCC-------C-----------C-------GAT--CT--CTG--TTGTGGTGTG--CG--TGTGC--GTGC--GTGTGTG------------------CGTGTGGAAACTGTGTATTAATCCATCAAGATCCAGGCGGCCCAACCAATCCTCGTCGGCATCGCGATCGGGCAACCCCCCCGGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCTCGTCGGCATCGCGATCGG...............2411.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAATCCTCGTCGGCA.........................1811.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAACTGTGTATTAA.................................................................1811.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGATCGGGCAACCCCCCCGGAG2411.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAATCCTCGTCGGCATCGCGAT..................2611.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--TGTGC--GTGC--GTGTGTG------------------CGTG..................................................................................2160.1710001000

Generated: 05/17/2015 at 10:56 PM