dwi_3713

CDS [Dwil\GK23076-cds]; CDS [Dwil\GK23076-cds]; exon [dwil_GLEANR_6335:6]; exon [dwil_GLEANR_6335:7]; intron [Dwil\GK23076-in]

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ATTCTTTTATCAATTTGGCCTGGGTCCGATTCCTTACTTTATTGGTGCAGGTAATTGAACAGACAAAATCGCGACGTTTTTTAATTTTCTTTAATTGAGTAAGCTGAAGCTTATTTATTTGTTTATTTATAGTAACGCAAGGTCGTCAAAGACAATATTGATGACAATGTTTTTCTTATTTTTCTCTAACCAACTTATTGGCATCAAATTATTTTTCAATTTGCAGAACTCTTTGAAGTGGCTCCCCGTCCTGTAGCAATGTCTATGGGAAGTCTG ***********************************************************.............((((.............(((.(((((((((....))))))))).)))............))))((..((((((((........))))))))..))..........................*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head	V117 male body
.......TATCAATTTGGCCTGGGTCCGAT......................................................................................................................................................................................................................................................	23	0	1	2.00	2	2	0	0	0
..TCTTTTATCAATTTGGCCTGGGTCCGAT......................................................................................................................................................................................................................................................	28	0	1	2.00	2	2	0	0	0
.................................................................................................................TTTATTTGTTTATTTGTAGTA..............................................................................................................................................	21	1	1	1.00	1	1	0	0	0
...........................GGTTCCTTACTTTATTGGTGCAGA.................................................................................................................................................................................................................................	24	2	1	1.00	1	0	1	0	0
.TTCTTTTATCAATTTGGCCTGGGTCCGAT......................................................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0
.......TATCAATTTGGCCTGGGTCCGATTCCT..................................................................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................TGGCTCCCCGTCCTGTAGCAATGTC.............	25	0	1	1.00	1	0	0	1	0
.......................................................................................................................................................................TGTTTTTCTTATTTTTCTCTAACCAACT.................................................................................	28	0	1	1.00	1	1	0	0	0
.............................................................GACAAAATCGCGACGTTTTT...................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1
...CTTTTATCAATTTGGCCTGGGT...........................................................................................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................GTGGCTCCCCGTCCTGTAGCAATGTCTAT..........	29	0	1	1.00	1	1	0	0	0
..............................TCCTTACTTTATTGGTGCAGG.................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
........................TCCGATTCCTTACTTTATTGGTGCAGAAC...............................................................................................................................................................................................................................	29	3	1	1.00	1	1	0	0	0
.....TTTATCAATTTGGCCTGGGTC..........................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	1	0	0
............................................................................................AATTGAGTAAGCTGAAGCT.....................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0
..................................................................................................................................................................................................................................................TCCCCGTCCTGTAGCAATGTCTAT..........	24	0	1	1.00	1	1	0	0	0
.....................................................................................................................................................................AATGTTGTTCTTATTTTGCGCTA........................................................................................	23	3	3	0.33	1	1	0	0	0
.................................................................................................................................................................................................................................................CTCCCCGTCGGGTAGCCA.................	18	3	15	0.07	1	0	0	1	0
.................................................................................................................................................................................................................................................................AATGCCTATGGGAAGTGTA	19	3	20	0.05	1	1	0	0	0

TAAGAAAATAGTTAAACCGGACCCAGGCTAAGGAATGAAATAACCACGTCCATTAACTTGTCTGTTTTAGCGCTGCAAAAAATTAAAAGAAATTAACTCATTCGACTTCGAATAAATAAACAAATAAATATCATTGCGTTCCAGCAGTTTCTGTTATAACTACTGTTACAAAAAGAATAAAAAGAGATTGGTTGAATAACCGTAGTTTAATAAAAAGTTAAACGTCTTGAGAAACTTCACCGAGGGGCAGGACATCGTTACAGATACCCTTCAGAC *******************************************************************************.............((((.............(((.(((((((((....))))))))).)))............))))((..((((((((........))))))))..))..........................***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V119 head
........................AGCCTAAGGAATGAAAGAA.........................................................................................................................................................................................................................................	19	2	9	0.22	2	2	0
.............................................................................................................................................................................................GCTTGAATAACCGAAGCTTA...................................................................	20	3	6	0.17	1	1	0
................................................................................................................................................................................................................................................CGAGGCGCGGGACACCGTT.................	19	3	13	0.08	1	1	0
....................ACCTAGGCCAAGAAATGAAA............................................................................................................................................................................................................................................	20	3	16	0.06	1	1	0
.............................................................................................................................................................................................GGTTGATGAACCGTAGTGTA...................................................................	20	3	20	0.05	1	0	1
....................................................................................................................................................................................................TAGCTGTAGTTTCATAAAAAG...........................................................	21	3	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004954:2300263-2300538 -	dwi_3713	---------------------ATTCTTTTATCAATTTGGCCTGGGTCCGATTCCTTACTTTATTGGTGCAGGTA--ATTGAA--CAGACAA-------AATCGCGACGTTTTTTAA-------------------------TTT--------T---------------------------------------------------------CTTTAATTG------------AGTAAGCTG-AAGCTTATTTATT-----------TGTTTATTTATAGTA-------A--C--GCAAGGTCG-TCAAAGACAAT-------ATTGATGACAATGTT----------------TTT---CTTA---------------TTTTTCTCTAACCAACTTATTGGCATCAAAT--TAT-TTTTCAATTTGCAGAACTCTTTGAAGTGGCTCCCCGTCCTGTAGCAATGTCTATGGGAAGTCTG
droVir3	scaffold_12875:14870317-14870501 +		---------------------ATTCTTCTATCAGTTCGGTCTCGGACCAATTCCTTATTTTATTGGCTCAGGTATAATTTGAAGAA-------------GCCGCAGTACT----TG-------------------------CATACACGTATTCAT------------------------------------------------------------------------------------------------------------------AT--------ATATACC-----------------------------------------------------------------------TATA---------------TTTG-------TATAC--------------TAATCT-ATTTCGATTTACAGAATTGTTTGAGGTGGCGCCACGCCCCGTGGCCATGTCCATGGGCAGTCTG
droMoj3	scaffold_6496:7023355-7023518 -		---------------------ATTCTTTTATCAATTTGGCCTCGGACCCATACCCTATTTCATTGGCTCAGGTA--AGTA-----------------------------------------------------------------------------------------TCGTTAT------------------------------------------------------------------------------------GCACATACATATATATTCC------------------------------ATATT-------------------GACTAAACAATTGA---------------------------------------------------------------------TATATCTTTTAGAACTGTTTGAGGTCGCGCCACGCCCCGTCGCCATGTCCATGGGCAGTCTC
droGri2	scaffold_15245:14891695-14891890 +		---------------------ATTCTTCTATCAGTTTGGCCTCGGTCCCATTCCCTACTTCATTGGTTCAGGTA--ATGTT--GCA-------------GTTGCAGCACTCTATGG-------------------------GAT--------T---------------------------------------------------------GGTTACAT----------------------------------------------ACGTGTGCTAA-----AAATAGT-----------------------------------------------------------------------TA-------------------------TTGTAAACTAAACT-G-----TTTCCGC-CTCTTGATTTACAGAACTGTTTGAGGTGGCGCCACGCCCGGTGGCCATGTCGATGGGCAGTCTA
dp5	3:7828580-7828939 -		---------------------TTTCTTCTACCAGTTCGGCCTGGGCCCCATTCCGTACTTCATTGGATCAGGTA--ATTTGAGGC-C---GGGCCGCCAGTCGCGTGACAACGCCAGCTGCCACAAGCGTCGAAGTAAAAG--------------------TCGAGT-CTCGTGATGCCGCCAGTTGC-TCCAATTTCAAAGCATTCAGTCTATAATTG------------AATTGAACG-AGGTTCATTGGAC-----------CAGTTGTTTATGACA-------A--T---AGGCAACT-CCAGACACTCT-------------------GTCGTTGTCGTTGATCG-CCGA-------TCGTCGCTGGCTCAATTACTGGACTGCTAACTGATACGA-----ATTATGCCTTTTCAATTCGCAGAACTGTTCGAGGTGGCCCCTCGCTCCGTGGCCATGTCGATGGGCAGCCTG
droPer2	scaffold_4:1739255-1739614 -		---------------------TTTCTTCTACCAGTTCGGCCTGGGCCCCATTCCGTACTTCATTGGATCAGGTA--ATTTGAGGC-C---GGGCCGCCAGTCGCGTGACAACGCCAGCTGCCACAAGCGTCGAAGTAAAAG--------------------TCGAGT-CTCGTGATGCCGCCAGTTGC-TCCAATTTCAGAGCATTCAGTCTATAATTG------------AATTGAACG-AGGTTCATTGGAC-----------CAGTTGTTTATGACA-------A--T---AGGCAACT-CCAGACACTCT-------------------GTCGTTGTCGTTGATCG-CCGA-------TCGTCGCTGGCTCAATTACTGGACTGCTAACTGATACGA-----ATTATGCCTTTTCAATTTGCAGAACTGTTCGAGGTGGCCCCTCGCTCCGTGGCCATGTCGATGGGCAGCCTG
droAna3	scaffold_13266:16289996-16290318 +	dan_2046	---------------------TTTCTTCTACCAGTTCGGTCTGGGCCCCATCCCCTACTTTATTGGAGCAGGTA--ATTGAA----------------AGTCGCGTGACT--ATTA-------------------------TTTATACGCATTCTTTGGACTCTAGTGCTCGTGACTGGGCCAGCTGC-TCAAGTTTCGGCGAACTG-----------------GACCCGATATAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGTCT-CCAGACAGACTGTCGT--ATTGCTGAC----GCAATATAATTGGACGATTGTT--TTTA---------------TTTATATCCCATGAACTGACTTTG-----ATTATGC-TTTTCAATTTGCAGAACTGTTCGAAGTGGCGCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG
droBip1	scf7180000395838:171571-171905 -		---------------------ATTCTTCTACCAGTTCGGGCTGGGCCCCATCCCCTACTTTATTGGAGCAGGTA--ATTGGA----------------AGTCGCGTGACT--ATTA-------------------------TTTATACGCATTCTTTGGGCTCCAGTGCTCGTGACTGGCCCAGCTGC-TCAAGTTTCGGCGAAGTGGGTCTGCAACTG-----GACCCGATATAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGTCT-CCAGACAGACTGTCGT--ATTGCTGAC----GCAATATAATTGGACGATTGGC--TCTA---------------TTTATATCACACAAACTGACTTTG-----ATTATGC-TTTTCAATTTGCAGAACTTTTCGAAGTGGCCCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG
droKik1	scf7180000302471:599506-599809 +		---------------------ATTCTTCTATCAATTCGGGCTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--ATTTGAGG---------------ATCCGGTAA----------------------------------TTATTGGCATTCC-------------------------CTAGCTGC-TCGAATTTCGAAGAACTGGGTCTGCAATT-----------GGAGTCTATTTAAAGTTCATTGGCT----CCCCAC-----------------------A--TCAGATACGTTT-CCAGACACAGCGTCGTGGATTGCTGAC----GCAATTTA-----------GG---TTTA---------------TTTTTAGCCACCAAACTGATTCAA-TTCGATTGTAT-TTTATAATTTGTAGAACTTTTCGAGGTGGCCCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG
droFic1	scf7180000453215:228874-229208 -		---------------------ATTCTTTTACCAATTTGGACTGGGTCCCATTCCCTACTTCATCGGATCAGGTA--ATTT-------------------GTCGCGTGACTTCGTTG-------------------------TTTACACGCTTTCGTACAACTTTATTATGCGCGACTGGGACAGCTGC-TCGTGCTTCGGAGAAGCGGGTTTGGTTTTGATTCGAAATTTGAATCGAAT--GGGTTCATTGGCACGCCACACATATATATGCTTATAGCC-------C--AT---------------------A-------------------GACTCTATAATTGAATGGCTGG---GGTA---------------TTTTGGGACCATTAACTGATTCGA-----ATTGTGC-TCTTCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTG
droEle1	scf7180000491240:776485-776841 +		---------------------CTTCTTTTTCCAATTTGGATTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--TTTA-------------------GTCGCGTGACTTTATTG-------------------------TTTGTACGATTTCCTAAAGCTCCAATAGTCGTGGCTGAGACAGCTGC-TCGTGTTTCGGAGAAATGGGTCTGCAATTGAGGCGGAATTGGAATCGAACG-AGGTTCATTGGCT----CTGGACACATTTGTTTACGACT-------TTTTTGAAGACCTTC-CCAGACACATC-------------------GACTTTATAATTGGATGACTGGTTGTTTA---------------TTTTTAGACCCCTAACTGATTTGA-----ATTGTGC-TCTCCAATTTGCAGAACTATTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTG
droRho1	scf7180000770177:63043-63395 +		---------------------CTTCTTTTATCAATTTGGACTGGGTCCCATTCCCTACTTCATCGGCTCAGGTA--ATTT-------------------GTCGCGTGACTTTATTG-------------------------TTTGTCTACATTCCCATAGCTCCATTAATCACGACTGAGACAGCTGC-GCGTGAATCCGAGAAATTGGTTTGCAATTGAGCCGGAATTGGAATCGAATG-GGGTTCATTGGCT----TACTATACATTTGTTTACGGCT-------T--TTAAAGACCTTCATCAGACAAACC-------------------GTCTGTATAATTGGATGACTGG---TTTA---------------TTTTTAGACCCATTACTAATTCGA-----ATTGTGC-TCTCCAATTTGCAGAATTATTTGAGGTGGCTCCGCGCTCAGTGGCCATGTCCATGGGCAGTCTT
droBia1	scf7180000302291:1830619-1830968 +		---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--ACTT-------------------GTCGCGTGACTCCATGG-------------------------TTT-TGCGCATTCCAGTAGCTCCGTTAATCGTGACGGGGACAGCTGCCTCATGTTTCGAAGAAGTGGCTTTGTCATTGAGGCGGAATCGGAATCGAATG-GGGTTCAACGCCT----CTCAACACATTTGCTTACGGCC-------A--TCAGGGACGTTC-CCAGACGCACT-------------------GGC--TATAATTGGATGGATGA---GTTA---------------TTTTTATACCGCTAACTGATTCGA-----TTTGTGC-TCTCCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCAATGGGCAGTCTG
droTak1	scf7180000415088:133703-134042 -		---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCCTACTTCATTGGCGCAGGTA--ATTT-------------------GTCGCGTGACTCCAATG-------------------------TTTGTGTGCATTCCAATAGCTCCATTAATCGTGACTGGGACAGAAGCCTCGAGTTTC-------------AGCAATTGAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT----CTCACCACATTTGCTTACGTTC-------A--TCAGAGACGTTC-CCAGACACGCT-------------------GACTCTATAATTGAATGGATTG---TTTA---------------TTTTTGGACCTCTAACTGATTCGA-----TTTGTGC-TCTCCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTC
droEug1	scf7180000409474:2806320-2806671 +		---------------------ATTCTTCTATCAATTTGGATTGGGTCCCATTCCCTACTTCATAGGCTCAGGTA--ATGT-------------------GTCGCGTGACTCCATTA-------------------------TTTATAAGCGTTTCAGTAGCTATTCTAATCGTGACTGGGACAGCTGC-TCGTGTTTCGAAGAAGTGATATAGCAATTGAGACGGAATTGGAATCGAATC-GGGTTCAATGGCT----CAGCACACATTTGTTTACGGCT-------A--TCAGAAACGTTC-CCAGACACAGT-------------------GACTCTCTAATTGAATGGCTGT---TTTA---------------TTTTTAGACTTTAAACTAATTTGA-----TTTGTGT-TCTTTAATTTGCAGAACTTTTCGAGGTGGCTCCCCGCTCCGTAGCCATGTCGATGGGAAGTCTT
dm3	chr2R:1846814-1847000 +		TGGCTGCATTTTCCTGTACATTTTCTTCTTCCAATTTGGTCTGGGCCCAATGCCGTTCTTCATCGGAGCAGGTG--CGTT-------------------GCA---CTAT-----------------------------------------------------------------------------------------------------TTAAAATTT------------TATCTTATC-AGGT-----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTATTTGA-----TTT-----TTGACACTTGACAGAACTGTTTGAACTGGCTACCCGTCCAGCCGCCATGTCGTTGGGAAGCTTG
droSim2	2r:4796372-4796726 +	dsi_21505	---------------------ATTCTTCTACCAATTCGGGCTGGGTCCCATTCCCTACTTTATTGGCGCAGGTA--AGTT-------------------GTTGCGTGACTCCATTG-------------------------TGTGTGCGCCTTCCAATAGCTCCATTAATCGTTATTGGGCCAGCTGC-TCGTGCTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGTTTACGACC-------A--CTAGATACGTTC-CCAGACGCACT-------------------CTCCATATAATTGAATGGCTGA---TTTA---------------TTTTTAGAGCTCTTACTGATTCGA-----TTTGTAC-TCTCCACTTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTG
droSec2	scaffold_1:1617756-1618110 +		---------------------ATTCTTCTACCAATTCGGGCTGGGTCCCATTCCCTACTTTATTGGCGCAGGTA--AGTT-------------------GTCGCGTGACTCCATTG-------------------------TGTGTGCGCATTCCAATAGCTCCATTAATCGTTATTGGGCCAGCTGC-TCGTGTTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGTTTACGACC-------A--CTAGATACGTTC-CCAGAGGCACT-------------------CTCCATATAATTGGATGGCTGG---TTTA---------------TTTTTAGAGCTCTTACTGATTCGA-----TTTGTAC-TCTCCACTTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTG
droYak3	2L:16630707-16631061 +		---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCTTACTTTATTGGCGCGGGTA--AGTT-------------------GTCGCGTGACTCCATTG-------------------------CTTGTGCGCATTTCAAAAGCTCCATTAATCGTTACTGGGGCAGCTGT-TCGTGTTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATCGGGATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGCTTACGGCA-------A--CCAGATACGTTC-CCAGACACACT-------------------TGCCATATAATTGGATGGCTTG---GTTA---------------TTTTTAGACCTATAACTGATTCGA-----TTTGTAC-TCTCCAATTTGCAGAACTGTTTGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGTTTG
droEre2	scaffold_4929:18651370-18651520 -		-------------------------------CAGCTGGGGCTGGGACCAATCGCTTACTTCATAGGCTCAGGTT--TGTA----------------------GAGCGAA-----------------------------------------------------------------ACAAAGACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTAGCTTATAATT-----TTTTTTACATT---TTTAATAGAGCTCCTCGAGGATTCGCCTCGTCCTGTGGCCATGTCCATGGGCAGCCTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

---------------------ATTCTTTTATCAATTTGGCCTGGGTCCGATTCCTTACTTTATTGGTGCAGGTA--ATTGAA--CAGACAA-------AATCGCGACGTTTTTTAA-------------------------TTT--------T---------------------------------------------------------CTTTAATTG------------AGTAAGCTG-AAGCTTATTTATT-----------TGTTTATTTATAGTA-------A--C--GCAAGGTCG-TCAAAGACAAT-------ATTGATGACAATGTT----------------TTT---CTTA---------------TTTTTCTCTAACCAACTTATTGGCATCAAAT--TAT-TTTTCAATTTGCAGAACTCTTTGAAGTGGCTCCCCGTCCTGTAGCAATGTCTATGGGAAGTCTG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................TATCAATTTGGCCTGGGTCCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0
.......................TCTTTTATCAATTTGGCCTGGGTCCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	2	0	0	0
......................TTCTTTTATCAATTTGGCCTGGGTCCGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
............................TATCAATTTGGCCTGGGTCCGATTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCCCCGTCCTGTAGCAATGTC.............	25	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................TGTT----------------TTT---CTTA---------------TTTTTCTCTAACCAACT....................................................................................	28	1	1.00	1	0	1	0	0	0
......................................................................................GACAA-------AATCGCGACGTTTTT.............................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
........................CTTTTATCAATTTGGCCTGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCCCGTCCTGTAGCAATGTCTAT..........	29	1	1.00	1	0	1	0	0	0
...................................................TCCTTACTTTATTGGTGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.............................................TCCGATTCCTTACTTTATTGGTGCAGAAC--..................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0
..........................TTTATCAATTTGGCCTGGGTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................AATTG------------AGTAAGCTG-AAGCT........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGTCCTGTAGCAATGTCTAT..........	24	1	1.00	1	0	1	0	0	0

droVir3

---------------------ATTCTTCTATCAGTTCGGTCTCGGACCAATTCCTTATTTTATTGGCTCAGGTATAATTTGAAGAA-------------GCCGCAGTACT----TG-------------------------CATACACGTATTCAT------------------------------------------------------------------------------------------------------------------AT--------ATATACC-----------------------------------------------------------------------TATA---------------TTTG-------TATAC--------------TAATCT-ATTTCGATTTACAGAATTGTTTGAGGTGGCGCCACGCCCCGTGGCCATGTCCATGGGCAGTCTG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................CTTCTATCAGTTCGGTCTCGGACCAATTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TCTATCAGTTCGGTCTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................TCGGTCTCGGACCAATTCCTTAT....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................ATTCCTTATTTTATTGGCTCAGA......................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................TTCTATCAGTTCGGTCTCGGACCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

---------------------ATTCTTTTATCAATTTGGCCTCGGACCCATACCCTATTTCATTGGCTCAGGTA--AGTA-----------------------------------------------------------------------------------------TCGTTAT------------------------------------------------------------------------------------GCACATACATATATATTCC------------------------------ATATT-------------------GACTAAACAATTGA---------------------------------------------------------------------TATATCTTTTAGAACTGTTTGAGGTCGCGCCACGCCCCGTCGCCATGTCCATGGGCAGTCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCCGTCGCCATGTCCAT..........	20	1	1.00	1	1	0	0	0	0	0

droGri2

---------------------ATTCTTCTATCAGTTTGGCCTCGGTCCCATTCCCTACTTCATTGGTTCAGGTA--ATGTT--GCA-------------GTTGCAGCACTCTATGG-------------------------GAT--------T---------------------------------------------------------GGTTACAT----------------------------------------------ACGTGTGCTAA-----AAATAGT-----------------------------------------------------------------------TA-------------------------TTGTAAACTAAACT-G-----TTTCCGC-CTCTTGATTTACAGAACTGTTTGAGGTGGCGCCACGCCCGGTGGCCATGTCGATGGGCAGTCTA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGCCATGTCGATGGGCA.....	20	1	1.00	1	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCCCGGTGGCCATGTC.............	19	1	1.00	1	1	0

dp5

---------------------TTTCTTCTACCAGTTCGGCCTGGGCCCCATTCCGTACTTCATTGGATCAGGTA--ATTTGAGGC-C---GGGCCGCCAGTCGCGTGACAACGCCAGCTGCCACAAGCGTCGAAGTAAAAG--------------------TCGAGT-CTCGTGATGCCGCCAGTTGC-TCCAATTTCAAAGCATTCAGTCTATAATTG------------AATTGAACG-AGGTTCATTGGAC-----------CAGTTGTTTATGACA-------A--T---AGGCAACT-CCAGACACTCT-------------------GTCGTTGTCGTTGATCG-CCGA-------TCGTCGCTGGCTCAATTACTGGACTGCTAACTGATACGA-----ATTATGCCTTTTCAATTCGCAGAACTGTTCGAGGTGGCCCCTCGCTCCGTGGCCATGTCGATGGGCAGCCTG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................................................................................................TACTGGACTGCTAACTGATACGA-----AT......................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	3	0
.........................................................................................................................................................................................................................................TTGAACG-AGGTTCATTGGAC-----------C....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................AGTTCGGCCTGGGCCCCATTCCGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTGTTCGAGGTGGCCCCTCGCTC.........................	28	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

---------------------TTTCTTCTACCAGTTCGGCCTGGGCCCCATTCCGTACTTCATTGGATCAGGTA--ATTTGAGGC-C---GGGCCGCCAGTCGCGTGACAACGCCAGCTGCCACAAGCGTCGAAGTAAAAG--------------------TCGAGT-CTCGTGATGCCGCCAGTTGC-TCCAATTTCAGAGCATTCAGTCTATAATTG------------AATTGAACG-AGGTTCATTGGAC-----------CAGTTGTTTATGACA-------A--T---AGGCAACT-CCAGACACTCT-------------------GTCGTTGTCGTTGATCG-CCGA-------TCGTCGCTGGCTCAATTACTGGACTGCTAACTGATACGA-----ATTATGCCTTTTCAATTTGCAGAACTGTTCGAGGTGGCCCCTCGCTCCGTGGCCATGTCGATGGGCAGCCTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................CTTCTACCAGTTCGGCCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
........................CTTCTACCAGTTCGGCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCGTGGCCATGTCGATGGG.......	23	1	1.00	1	0	0	1	0	0	0
........................CTTCTACCAGTTCGGCCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTTCGAGGTGGCCCCT..............................	19	1	1.00	1	0	0	1	0	0	0
........................CTTCTACCAGTTCGGCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TGGACTGCTAACTGATAATG-----........................................................................	20	9	0.11	1	0	0	0	0	1	0

droAna3

---------------------TTTCTTCTACCAGTTCGGTCTGGGCCCCATCCCCTACTTTATTGGAGCAGGTA--ATTGAA----------------AGTCGCGTGACT--ATTA-------------------------TTTATACGCATTCTTTGGACTCTAGTGCTCGTGACTGGGCCAGCTGC-TCAAGTTTCGGCGAACTG-----------------GACCCGATATAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGTCT-CCAGACAGACTGTCGT--ATTGCTGAC----GCAATATAATTGGACGATTGTT--TTTA---------------TTTATATCCCATGAACTGACTTTG-----ATTATGC-TTTTCAATTTGCAGAACTGTTCGAAGTGGCGCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GCC....................................................................................................................................................................................	24	1	9.00	9	0	8	1	0	0	0
...............................................................................................................................................TATACGCATTCTTTGGACTCTAGTGC.....................................................................................................................................................................................................................................................................................................................	26	1	6.00	6	3	3	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------GACCCGA.......................................................................................................................................................................................................................................................	25	1	6.00	6	0	6	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------GACCC.........................................................................................................................................................................................................................................................	23	1	5.00	5	2	3	0	0	0	0
.........................................................................................................................................................CTTTGGACTCTAGTGCTCGTGACTG............................................................................................................................................................................................................................................................................................................	25	1	4.00	4	3	0	1	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GC.....................................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
.......................................................................................................................................................................................................................................TATAGAATG-GGGTTCATTGGCA----C------------------------------------GC.....................................................................................................................................................................................	25	1	3.00	3	1	2	0	0	0	0
..........................................................................................................................................................TTTGGACTCTAGTGCTCGTGACTG............................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------G......................................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0
.......................................................................................................................................................TTCTTTGGACTCTAGTGCTCGTGACTG............................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.........................................................................................................................................................CTTTGGACTCTAGTGCTCGTGACTGG...........................................................................................................................................................................................................................................................................................................	26	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGTGGCGCCCCGCTCCGTGGCCA.................	27	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................................GACTCTAGTGCTCGTGACTGGGCC........................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
.....................TTTCTTCTACCAGTTCGGTCTGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................T-CCAGACAGACTGTCGT--ATTGCTGAC----G...............................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................TTCTTTGGACTCTAGTGCTCGTGACC.............................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0
......................TTCTTCTACCAGTTCGGTCTGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAACTGTTCGAAGTGGCGCC...............................	24	1	2.00	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................ATAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGT..................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGCCCCGCTCCGTGGCCATGTCGA...........	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................GCTGC-TCAAGTTTCGGCGAACTG-----------------GACC..........................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................GACTCTAGTGCTCGTGACTGGGCCAGC.....................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................TTCTTTGGACTCTAGTGCTCGTGACTGG...........................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------GACCCG........................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................GTTTCGGCGAACTG-----------------GACCCGA.......................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCAATTTGCAGAACTGTTCGAAGTGG...................................	29	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................TTCTTTGGACTCTAGTGCTCGTGAC..............................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................T-CCAGACAGACTGTCGT--ATTGCTGAC----GC..............................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCTCCGTGGCCATGTCGATGGGCA.....	27	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTCCGTGGCCATGTCGATGGGC......	24	1	1.00	1	1	0	0	0	0	0
.....................TTTCTTCTACCAGTTCGGTCTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................ACCAGTTCGGTCTGGGCCCCATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................TGCTCGTGACTGGGCCAGCTGC-TCAA.............................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
........................CTTCTACCAGTTCGGTCTGGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GC-TCAAGTTTCGGCGAACTG-----------------GACCC.........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTA---------------TTTATATCCCATGAACTGACTT...............................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................TTGGACTCTAGTGCTCGTGACTGG...........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
............................TACCAGTTCGGTCTGGGCCCCATCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGACTGTCGT--ATTGCTGAC----................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCTCCGTGGCCATGTCGATGGG.......	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................TTGGACTCTAGTGCTCGTGACTGGG..........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
......................TTCTTCTACCAGTTCGGTCTGGGCCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------GACC..........................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................ATAGAATG-GGGTTCATTGGCA----C------------------------------------GC.....................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGTGGCCATGTCGATGGG.......	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCCCCGCTCCGTGGCCATGTCGA...........	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGAACTGTTCGAAGTGGCGC................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................CTTTGGACTCTAGTGCTCGTGACTGGT..........................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................TTGGACTCTAGTGCTCGTGACTGGGC.........................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................TTCTTCTACCAGTTCGGTCTGGGCCCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTATGC-TTTTCAATTTGCAGAACTGT............................................	26	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGCCATGTCGATGGGCAG....	23	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TTTTCAATTTGCAGAACTGTTCGAA.......................................	28	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................GACTCTAGTGCTCGTGACTGGGCCAG......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...................................TCGGTCTGGGCCCCATCCCCTACC...................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................TGC-TTTTCAATTTGCAGAACTGTTCGA........................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGAAGTGGCGCCCCGCTCCGTGG....................	25	1	1.00	1	1	0	0	0	0	0
......................TTCTTCTACCAGTTCGGTCTGGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................GCTGC-TCAAGTTTCGGCGAACTG-----------------GA............................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................TGGACTCTAGTGCTCGTGACTG............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GCCG...................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................T-CCAGACAGACTGTCGT--ATTGCTGAC----................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...............................CAGTTCGGTCTGGGCCCCATCCCCTACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................TGC-TCAAGTTTCGGCGAACTG-----------------GACCCGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGC..................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGTGGCGCCCCGCTCCGTGGCCATG...............	29	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACTGTTCGAAGTGGCGCCCCGC...........................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGTT.................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................TAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGT..................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
................................AGTTCGGTCTGGGCCCCATCCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GACAGACTGTCGT--ATTGCTGAC----GCAA............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTA---------------TTTATATCCCATGAACTGACTTTG-----........................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................GGACTCTAGTGCTCGTGACTGGGC.........................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................ACTGTCGT--ATTGCTGAC----GCAATATA........................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------GACCCGATA.....................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................AAGTTTCGGCGAACTG-----------------GACCCGATA.....................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................TCAAGTTTCGGCGAACTG-----------------G.............................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGCTGAC----GCAATATAATTGGACGAT..............................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................TGC-TCAAGTTTCGGCGAACTG-----------------GACCCGAT......................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................CTCGTGACTGGGCCAGCTGC-TT...............................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TTA---------------TTTATATCCCATGAACTGACTTT..............................................................................	26	1	1.00	1	1	0	0	0	0	0
.......................TCTTCTACCAGTTCGGTCTGGGCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................CGCATTCTTTGGACTCTAGTGCTCGTG................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TCATTGGCA----C------------------------------------GCCGTCT-CCAGACAGA......................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................TATATCCCATGAACTGACTTTG-----ATTA....................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................TGACTGGGCCAGCTGC-TCAAGTTTCGGC.....................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................AGCTGC-TCAAGTTTCGGCGAACTG-----------------GACCC.........................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
..............................................................TTGGAGCAGGTA--ATTGAA----------------AGTCGCGT....................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGCCATGTCGATGGGCAGTC..	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTGTTCGAAGTGGCGCC...............................	22	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................TTTATATCCCATGAACTGA..................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TA---------------TTTATATCCCATGAACTGACTTTG-----........................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................CTTTGGACTCTAGTGCTCGTGACT.............................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................TTTATTGGAGCAGGTA--ATTGAA----------------AGTC........................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1
......................TTCTTCTACCAGTTCGGTCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................T-CCAGACAGACTGTCGT--ATTGCTG......................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................GACTCTAGTGCTCGTGACTGG...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................TTCATTGGCA----C------------------------------------GCCGTCT-CCAG...........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................ATGAACTGACTTTG-----ATTATGC-................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................CAGCTGC-TCAAGTTTCGGCGAACTG-----------------GAC...........................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................CAAGTTTCGGCGAACTG-----------------GACCCGA.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGCCATGTCGATGGGCAGTCT.	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................TGGACTCTAGTGCTCGTGACTGGGG.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................TGC-TCAAGTTTCGGCGAACTG-----------------GACC..........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droBip1

---------------------ATTCTTCTACCAGTTCGGGCTGGGCCCCATCCCCTACTTTATTGGAGCAGGTA--ATTGGA----------------AGTCGCGTGACT--ATTA-------------------------TTTATACGCATTCTTTGGGCTCCAGTGCTCGTGACTGGCCCAGCTGC-TCAAGTTTCGGCGAAGTGGGTCTGCAACTG-----GACCCGATATAGAATG-GGGTTCATTGGCA----C------------------------------------GCCGTCT-CCAGACAGACTGTCGT--ATTGCTGAC----GCAATATAATTGGACGATTGGC--TCTA---------------TTTATATCACACAAACTGACTTTG-----ATTATGC-TTTTCAATTTGCAGAACTTTTCGAAGTGGCCCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---------------------ATTCTTCTATCAATTCGGGCTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--ATTTGAGG---------------ATCCGGTAA----------------------------------TTATTGGCATTCC-------------------------CTAGCTGC-TCGAATTTCGAAGAACTGGGTCTGCAATT-----------GGAGTCTATTTAAAGTTCATTGGCT----CCCCAC-----------------------A--TCAGATACGTTT-CCAGACACAGCGTCGTGGATTGCTGAC----GCAATTTA-----------GG---TTTA---------------TTTTTAGCCACCAAACTGATTCAA-TTCGATTGTAT-TTTATAATTTGTAGAACTTTTCGAGGTGGCCCCCCGCTCCGTGGCCATGTCGATGGGCAGTCTG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---------------------ATTCTTTTACCAATTTGGACTGGGTCCCATTCCCTACTTCATCGGATCAGGTA--ATTT-------------------GTCGCGTGACTTCGTTG-------------------------TTTACACGCTTTCGTACAACTTTATTATGCGCGACTGGGACAGCTGC-TCGTGCTTCGGAGAAGCGGGTTTGGTTTTGATTCGAAATTTGAATCGAAT--GGGTTCATTGGCACGCCACACATATATATGCTTATAGCC-------C--AT---------------------A-------------------GACTCTATAATTGAATGGCTGG---GGTA---------------TTTTGGGACCATTAACTGATTCGA-----ATTGTGC-TCTTCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

---------------------CTTCTTTTTCCAATTTGGATTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--TTTA-------------------GTCGCGTGACTTTATTG-------------------------TTTGTACGATTTCCTAAAGCTCCAATAGTCGTGGCTGAGACAGCTGC-TCGTGTTTCGGAGAAATGGGTCTGCAATTGAGGCGGAATTGGAATCGAACG-AGGTTCATTGGCT----CTGGACACATTTGTTTACGACT-------TTTTTGAAGACCTTC-CCAGACACATC-------------------GACTTTATAATTGGATGACTGGTTGTTTA---------------TTTTTAGACCCCTAACTGATTTGA-----ATTGTGC-TCTCCAATTTGCAGAACTATTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------------CTTCTTTTATCAATTTGGACTGGGTCCCATTCCCTACTTCATCGGCTCAGGTA--ATTT-------------------GTCGCGTGACTTTATTG-------------------------TTTGTCTACATTCCCATAGCTCCATTAATCACGACTGAGACAGCTGC-GCGTGAATCCGAGAAATTGGTTTGCAATTGAGCCGGAATTGGAATCGAATG-GGGTTCATTGGCT----TACTATACATTTGTTTACGGCT-------T--TTAAAGACCTTCATCAGACAAACC-------------------GTCTGTATAATTGGATGACTGG---TTTA---------------TTTTTAGACCCATTACTAATTCGA-----ATTGTGC-TCTCCAATTTGCAGAATTATTTGAGGTGGCTCCGCGCTCAGTGGCCATGTCCATGGGCAGTCTT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCCTACTTCATTGGCTCAGGTA--ACTT-------------------GTCGCGTGACTCCATGG-------------------------TTT-TGCGCATTCCAGTAGCTCCGTTAATCGTGACGGGGACAGCTGCCTCATGTTTCGAAGAAGTGGCTTTGTCATTGAGGCGGAATCGGAATCGAATG-GGGTTCAACGCCT----CTCAACACATTTGCTTACGGCC-------A--TCAGGGACGTTC-CCAGACGCACT-------------------GGC--TATAATTGGATGGATGA---GTTA---------------TTTTTATACCGCTAACTGATTCGA-----TTTGTGC-TCTCCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCAATGGGCAGTCTG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCCTACTTCATTGGCGCAGGTA--ATTT-------------------GTCGCGTGACTCCAATG-------------------------TTTGTGTGCATTCCAATAGCTCCATTAATCGTGACTGGGACAGAAGCCTCGAGTTTC-------------AGCAATTGAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT----CTCACCACATTTGCTTACGTTC-------A--TCAGAGACGTTC-CCAGACACGCT-------------------GACTCTATAATTGAATGGATTG---TTTA---------------TTTTTGGACCTCTAACTGATTCGA-----TTTGTGC-TCTCCAATTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCCTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

---------------------ATTCTTCTATCAATTTGGATTGGGTCCCATTCCCTACTTCATAGGCTCAGGTA--ATGT-------------------GTCGCGTGACTCCATTA-------------------------TTTATAAGCGTTTCAGTAGCTATTCTAATCGTGACTGGGACAGCTGC-TCGTGTTTCGAAGAAGTGATATAGCAATTGAGACGGAATTGGAATCGAATC-GGGTTCAATGGCT----CAGCACACATTTGTTTACGGCT-------A--TCAGAAACGTTC-CCAGACACAGT-------------------GACTCTCTAATTGAATGGCTGT---TTTA---------------TTTTTAGACTTTAAACTAATTTGA-----TTTGTGT-TCTTTAATTTGCAGAACTTTTCGAGGTGGCTCCCCGCTCCGTAGCCATGTCGATGGGAAGTCTT	Size	Hit Count	Total Norm	Total
No Reads

dm3

TGGCTGCATTTTCCTGTACATTTTCTTCTTCCAATTTGGTCTGGGCCCAATGCCGTTCTTCATCGGAGCAGGTG--CGTT-------------------GCA---CTAT-----------------------------------------------------------------------------------------------------TTAAAATTT------------TATCTTATC-AGGT-----------------------------------------------------------------------------------------------------------------------------------------------TTCTTTTATTTGA-----TTT-----TTGACACTTGACAGAACTGTTTGAACTGGCTACCCGTCCAGCCGCCATGTCGTTGGGAAGCTTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................TCTTCATCGGAGCAGGTG--CGTT-------------------GCA---C....................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................GTTCTTCATCGGAGCAGGTG--C.................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACAGAACTGTTTGAACTG....................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGTTCTTCATCGGAGCAGGTG--..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TCATCGGAGCAGGTG--CGTT-------------------GCA---C....................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AATGCCGTTCTTCATCGGAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACCCGTCCAGCCGCCATGT..............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAACTGGCTACCCGTCCA........................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TG--CGTT-------------------GCA---CTAT-----------------------------------------------------------------------------------------------------TTAAAATT....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................TTTGA-----TTT-----TTGACACTTGACAGAACTGT............................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACTTGACAGAACTGTT...........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

---------------------ATTCTTCTACCAATTCGGGCTGGGTCCCATTCCCTACTTTATTGGCGCAGGTA--AGTT-------------------GTTGCGTGACTCCATTG-------------------------TGTGTGCGCCTTCCAATAGCTCCATTAATCGTTATTGGGCCAGCTGC-TCGTGCTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGTTTACGACC-------A--CTAGATACGTTC-CCAGACGCACT-------------------CTCCATATAATTGAATGGCTGA---TTTA---------------TTTTTAGAGCTCTTACTGATTCGA-----TTTGTAC-TCTCCACTTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGAACTGTTCGAGG......................................	18	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
...........................CTACCAATTCGGGCTGGGTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TCTGCAATTAAGGCGGAA...........................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
........................CTTCTACCAATTCGGGCTGGGTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................TCTTCTACCAATTCGGGCTGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................ATTCGGGCTGGGTCCCATTCCCTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ATTCGGGCTGGGTCCCATTCCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTTCGAGGTGGCTCCCC.............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAACTGTTCGAGGTGGCTCCCC.............................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................GGGTTCAATGGCT-GGA............................................................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

---------------------ATTCTTCTACCAATTCGGGCTGGGTCCCATTCCCTACTTTATTGGCGCAGGTA--AGTT-------------------GTCGCGTGACTCCATTG-------------------------TGTGTGCGCATTCCAATAGCTCCATTAATCGTTATTGGGCCAGCTGC-TCGTGTTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATTGGAATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGTTTACGACC-------A--CTAGATACGTTC-CCAGAGGCACT-------------------CTCCATATAATTGGATGGCTGG---TTTA---------------TTTTTAGAGCTCTTACTGATTCGA-----TTTGTAC-TCTCCACTTTGCAGAACTGTTCGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGTGGCCATGTCGATGGG.......	22	1	1.00	1	0	1	0	0

droYak3

---------------------ATTCTTCTACCAATTCGGACTGGGTCCCATTCCTTACTTTATTGGCGCGGGTA--AGTT-------------------GTCGCGTGACTCCATTG-------------------------CTTGTGCGCATTTCAAAAGCTCCATTAATCGTTACTGGGGCAGCTGT-TCGTGTTTCGAAGAAGTGATTCTGCAATTAAGGCGGAATCGGGATCGAATT-GGGTTCAATGGCT-GCCCAGCACACATTTGCTTACGGCA-------A--CCAGATACGTTC-CCAGACACACT-------------------TGCCATATAATTGGATGGCTTG---GTTA---------------TTTTTAGACCTATAACTGATTCGA-----TTTGTAC-TCTCCAATTTGCAGAACTGTTTGAGGTGGCTCCCCGCTCCGTGGCCATGTCGATGGGCAGTTTG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTCCCCGCTCCGTGGCCATGTCGA...........	27	1	20.00	20	0	1	0	0	0	0	0	0	0	0	19
.................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAGGTGGCTCCCCGCTCCGTGGCCA.................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTGGCTCCCCGCTCCGTGGCCA.................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGTGGCCATGTCGATGGGCAGT...	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTTGAGGTGGCTCCCCGCTCC........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TCCCATTCCTTACTTTATTGGCGCG........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCCGCTCCGTGGCCATGTCGATGGG.......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
......................TTCTTCTACCAATTCGGACTGGGTCCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................TCTTCTACCAATTCGGACTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
......................TTCTTCTACCAATTCGGACTGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................TCGGACTGGGTCCCATTCCTTACTT..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................TCTTCTACCAATTCGGACTGGGTCCCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................CCCATTCCTTACTTTATTGGCGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAGGTGGCTCCCCGCTCCGTG.....................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TACCAATTCGGACTGGGTCCCATTCCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................TCCCATTCCTTACTTTATTGGCGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................CCATTCCTTACTTTATTGGCGCG........................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGGTGGCTCCCCGCTCCGTGGCC..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................TGGGTCCCATTCCTTACTTTATTGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................TCTACCAATTCGGACTGGGTCCCAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................TACCAATTCGGACTGGGTCCCATTCC........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGTTTGAGGTGGCTCCCCGCTCCGT......................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

-------------------------------CAGCTGGGGCTGGGACCAATCGCTTACTTCATAGGCTCAGGTT--TGTA----------------------GAGCGAA-----------------------------------------------------------------ACAAAGACAAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTGTAGCTTATAATT-----TTTTTTACATT---TTTAATAGAGCTCCTCGAGGATTCGCCTCGTCCTGTGGCCATGTCCATGGGCAGCCTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dwi_3713

scf2_1100000004954:2300313-2300488 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.5	-20.4	-20.3