ID:

dwi_371

 Coordinate:

scf2_1100000004401:1062453-1062603 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.0 -16.8 -16.5 -16.3

Flybase annnotation

exon [dwil_GLEANR_10292:2]; CDS [Dwil\GK10356-cds]; intron [Dwil\GK10356-in]

No Repeatable elements found

mature
star
  1. scf2_1100000013831:536-556 +
  2. scf2_1100000002093:6253-6273 +
  3. scf2_1100000004382:34971-34991 +
  4. dwi_371  scf2_1100000004401:1062478-1062498 +
  5. scf2_1100000004510:1955481-1955501 +
  6. scf2_1100000004512:2158299-2158319 +
  7. scf2_1100000004521:1604274-1604294 +
  8. scf2_1100000004521:5894142-5894162 +
  9. scf2_1100000004577:3051028-3051048 +
  10. scf2_1100000004585:6305023-6305043 +
  11. scf2_1100000004595:137842-137862 +
  12. scf2_1100000004888:993597-993617 +
  13. scf2_1100000004943:12038559-12038579 +
  14. scf2_1100000004909:78107-78127 +
  15. scf2_1100000004949:1843305-1843325 +
  16. scf2_1100000004952:154123-154143 +
  17. scf2_1100000004954:5156746-5156766 +
  18. scf2_1100000004967:169157-169177 +
  19. scf2_1100000004968:573154-573174 +
  20. scf2_1100000004970:4739-4759 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGATCAATATCTTCGTTATTTCCTAAGCCGTTCTTTCGCAAACTTAGACCTTTTACACAAAAAACTTGCAAGGGTATACAAACTTTGACGCGGTCAAAGTTAGCCCCGTCCCTCTGGTTTTTTTTTAAGGTTGGGCTTTTTGCATTGAAATTTTTTTTTCGATTTATCTTATAAATCCATTTGAATCTCTTTTTGTTACAGTTTCGATGTAGAAAATGGCCAAGGCGCCCGATCACCGCTTGAGGGCGGCT
***************************************************************************........(((((.((((........(((((....(((..............)))..)))))..)))).)))))****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M020
head
 V118
embryo
 M045
female body
 V117
male body		 V119
head
........................................................................................................................................................................................................GTTTCGATGTAGAAAATGGCCAAGGC......................... 26 0 1 2.00 2 1 1 0 0 0
................................................................................................................................................................................................................GTAGAAAATGGCCAAGGCGCCCGAT.................. 25 0 1 2.00 2 2 0 0 0 0
..............................................................................................................................................................................................................ATGTAGAAAATGGCCAAGGCGC....................... 22 0 1 2.00 2 2 0 0 0 0
.........................................................................................................................................................................................................TTTTGATGTAGAAAATTGCCA............................. 21 2 2 1.50 3 3 0 0 0 0
.............................................................................................................................................................................................................................AAGGCGTACGATCACCGCGTG......... 21 3 1 1.00 1 0 0 1 0 0
..................................................................................................................................................................................................................................GCCCGATCACCGCTTGAGGGC.... 21 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................GTAGAAAATGGCCAAGGCGCCCGATC................. 26 0 1 1.00 1 0 1 0 0 0
.........................................................................................................................TTTTTAAGGTTGGGCTTTTTGCATTGAA...................................................................................................... 28 0 1 1.00 1 0 0 0 1 0
...............................................................................................................................................................................................................................GGCGTACGATCACCGCGTG......... 19 3 2 0.50 1 0 0 1 0 0
.....................................................................................................................................................................................................................ATATGGCCAAGGCTCCCGA................... 19 2 2 0.50 1 0 0 0 0 1
.....................................................................................................................................................................................................ATAGTTTCGATGTAAAAAA................................... 19 2 9 0.11 1 0 1 0 0 0
...........................................................................ATACAAACTTTGACGCGGTCA........................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0 0
...........................................................................................................................TTTAAGGTTGGGGTTGTTGG............................................................................................................ 20 3 20 0.05 1 0 0 0 0 1
.............................................................................................TCAAAGTTAGCCCCGTCCCTCTGG...................................................................................................................................... 24 0 20 0.05 1 0 0 1 0 0
...................................................................................TTTGACGCGGTCTAAGTTAGCCCCGT.............................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0
............................................................................................GTCAAAGTTAGCCCCGTCCCT.......................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.............................................................................................TCAAAGTTAGCCCCGTCCCTCTGGTT.................................................................................................................................... 26 0 20 0.05 1 0 0 1 0 0
.....................................................................................TGACGCGGTCAAAGTTAGCCCCGT.............................................................................................................................................. 24 0 20 0.05 1 0 0 0 0 1
...................TTCCTAAGCCGTTCTTTCGCA................................................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0
.........TCTTCGTTATTTCCTAAGCCGTTCTT........................................................................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0
................TATTTCCTAAGCCGTTCTTTCG..................................................................................................................................................................................................................... 22 0 20 0.05 1 0 0 1 0 0
..............................................................................................TCAATTTAGCCCCGTCCCTCTGGTT.................................................................................................................................... 25 3 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

ACTAGTTATAGAAGCAATAAAGGATTCGGCAAGAAAGCGTTTGAATCTGGAAAATGTGTTTTTTGAACGTTCCCATATGTTTGAAACTGCGCCAGTTTCAATCGGGGCAGGGAGACCAAAAAAAAATTCCAACCCGAAAAACGTAACTTTAAAAAAAAAGCTAAATAGAATATTTAGGTAAACTTAGAGAAAAACAATGTCAAAGCTACATCTTTTACCGGTTCCGCGGGCTAGTGGCGAACTCCCGCCGA
******************************************************************************************************........(((((.((((........(((((....(((..............)))..)))))..)))).)))))*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M045
female body
 V118
embryo
 M020
head
 V119
head
......................................................................................................................................................AAAAAAAAAGCTGAATAG................................................................................... 18 1 6 0.17 1 0 1 0 0
............................................................................................................................................................................................................................GTTCCACGGGCAGGTGGCG............ 19 3 6 0.17 1 1 0 0 0
................................................................................................................................................................................................................................CGAGGGGTAGTGTCGAACT........ 19 3 9 0.11 1 1 0 0 0
................................................................................................................................................................................................................................CGAGGGCTAGTGTCGAAC......... 18 2 14 0.07 1 0 0 1 0
...............................................................................................................................................................................GGGTAGACTTAGAAAAAAACA....................................................... 21 3 17 0.06 1 0 0 0 1
........................................................................................................................................................AAAAAATGCTGAATAGAAT................................................................................ 19 2 18 0.06 1 0 1 0 0
................ATAAAGGATTCGGCAAGAAAGCGTT.................................................................................................................................................................................................................. 25 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droWil2 scf2_1100000004401:1062403-1062653 + dwi_371 TGATCAATA-----------------------TCTTCG--TTATT--TCCT------------------------------AAGCCGTT--CTTTCGCAAACTTA-------------------------------------GAC--------------------CTTTTACA-CA--------------------------------------------------------AAAAACTTGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCCCGTCCCTCTGGTTTTTTTTTAAGGTTGG-----GCTTTTTGCAT-----------------------------------------------------------------------------------TGAAATTTTTTTTTCGATTTATCT--------------------------------------TA---------TAAATCCATT------TGA-------------------AT-----C-TCTT---TTTGTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAA--------------------------------------GGCGCC--CGATCACCGCTTG-----------------------------------------------------------AGGGCGGCT
droVir3 scaffold_13042:762911-763173 + TGAACAACT-----------------------TTTTTG--TTA---------------------------------------------------------ATACAGATATCCTAATCATACCCGGCTTC-------------AACTATTCACCCTG-------------TGCT-GAGCATTATTAAAAG-------------------------------G-----------TTGGGTCTGCAAGGGTATTGCATCTTCGGTGT--GCCGAAGATAGCCCT---------------------------------------------TCTTTCTCGTTTTTTTTTTT-TCGTTTTTC------ACGCC-AAATTGA-T-----------------TTTCAGTTA----------------------------------------------------------------------------------------------------------------TTT------TGCAT--GCC--AA---TTGGCTGTTTGGC----TCTTG-----TTGCGC-----CCGTTTCGGATTACCACAGC-------------------GTCGC---CTGCTGCCGCTTG-----------------------------------------------------------CTGCTGGCT
droMoj3 scaffold_6308:2372346-2372438 + ATAATCATA-----------------------TTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------ATTTCTTTTC----GTTTTCCCC-------CCATTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCC--CGATCACCACTTG-----------------------------------------------------------AGGGCGGCT
droGri2 scaffold_14830:5655563-5655723 + TGACCAAAC-----------------------TCTTCA--CTT----------------------------------------------------------------------------------------------------------------A-------------TGTTCAAGAATAATAAATAGGTTCTTAAACTTATAGTAAATTTGAGACAAT-GCCAATTTGTCTCCGGTCTAAGAGGGTGTTTAATCTTCGACAT--GCGTCAGAAAGC----------------------------------------------CTTCTTTCTTTGTTGTTGTTG-----------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG--------------------------------------GGCTCT--TC----------------------------------------------------------------------------ACA
dp5 XL_group1e:2752919-2753034 + TTATATGTA-----------------------CATA-----TATCTCTGTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTCCATATTTTGCTTTGGTTTT-----------------------------------------------------------------------C---------T----T----TATT-------TCATTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--CGATCACCGCTTG-----------------------------------------------------------AGGGCGGTT
droPer2 scaffold_2349:4066-4142 + TTTTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTTTTTCATTTGATTTTACAACTAAAATTAAA---------------------------------------------------A----T---------T----T----TTTT-------TTTTTTAT-T--AATTTGATATA------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13117:4013274-4013494 + TAATA-ATA-----------------------TAGATGC----------------------------------------------------------------------------------GTGGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------ACTGAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTT-CCTTTCTTGTTTTTATATATTTTTAG---------------------------------------------------------------------------------------------------TATTTTTAGTTGAGTATCTGAT------------------TTGGTATTTTATTTAT-----------------------------------------TTTTTTGTTT----GT-----T-TTAT---TTTGTTTT-A--TTTTTTTGTGG-GCAA-GACAAC-----AATTAA--------------------------------------AGCACC--CAA-TACCACTT---------------------------------------------------------------------
droBip1 scf7180000396439:55043-55273 - TATCCGATG-----------------------TTTGCG--ATAT-------------------------------------------------------------------------ATATCC---------------------------------------------------G---------------------------------------------G-----------TTTTAACTGCAAGGGTATGTAAACTTCGGCTCCGCCCGAAGTTAGCTTT-CCTTTCTTGTTTT-ATACATATTTACTTTTATTTTTTTT--------------------------------------------------------------------------------------TATTTATTTTTTTACTTTTAATTTTTACGCTATTATTACT---------------------------------------------------A----T---------TTTTAAT-----T-GCAT---TCTATTAC-A--ATT--ATTGTAAAA---ATAAGT-----GACGGA--------------------------------------CGTGTC--GGATGACAAAATG---------------------------------------------------------CCTGAAGGACT
droKik1 scf7180000302688:11038-11262 - TGTTTTGTGTGTGTTTTAAGCATTTAAATTTATA------------------------------------------------------------------ATATAA-------------------------------------------------------------ATAACA-A---------------------------------------------A-----------ACCAATCTGCAAGGGTATACCATTTTCGGCGT--GCCGAAGTTAGC----------------------------------------------TTCCTTTCTTGTTCAATTACA-----------------A------------TATTCTTCATTAAACCCGTATT--------------------------------------------------TTGTTAT---------------CGAATATCTACT-----------------A----T---------TTTTA------TGTAG--ATC--TA---TCG--ATT--ATTGCGTCAA--TGAAGT-----AGCTAA--------------------------------------TGCATT--ATTCTAATGCATA-----------------------------------------------------------AGAGCG---
droFic1 scf7180000454040:432367-432586 - TTAATAGAA-----------------------AAGTCG--T------------------------------CATAGCTTCGAGGTTGTTAGCCTTTATGTATTTT-------------------------------------G------------------------------------------------------------------------------TTCGATTTGTTTGATGACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGC----------------------------------------------TTCCTTTCTTGTTTGTCCTTCTGTTAG----------------------------------------------------------------------------------------------------------------------GGAATATT---------CTAGCTTAATTTTATT-T---------C----AT----TAT-------ATTCTAAT-T--TATTTAGT----TCAAG-----TGTTGC-----TTATTTCAAAATGGCCTA---------------------TACATT--CGAT-----------------------------------------------------------------------------
droEle1 scf7180000491268:1377654-1377898 - AAAAATATA-----------------------TAAAA----TATCTATCAAATAATTGAGCTGCAAATCATCATAGCTTCAATG-----------------------------------------------------------------------------------------------------------------------------------------TTTAATTCTTGCAATAGCTGCAAGGGTATATCAACTTCGGCTT--GCCGAAATTTGC----------------------------------------------TTTTTTTCTTGTTAAATCGTG-----------------C------------TTTTCTTCA------------------------------------------------------------------------------TGATTTTTA---------TAAACTCAGCTTTTGTGGCTTCTC-----TGTTT--------------------GTTTTTCC-A--TTTACACTGCG------AAAAAT-------TTGA---------------------------TCTACGATCAAAGCGCCTCCGTTCAGC------------------------------------------------------------------TGTTTGA
droRho1 scf7180000776685:1542-1770 - TTATGAGTG-----------------------TTAAGG--ATGCA--TCAT------------------------------ATGAATAA--TTTTAGAGAATATAA-------------------------------------------------------------TTTACA-G---------------------------------------------------------AATTTTTTGCAAGGGTATATCAACTTCGGTTCCGCTTGAAGTTAGCTTT---------------------------------------------CCTTTCTTGTTTTTATTTTG-TTTTTGTTC------CTTGG-GATTTG-----------------------------------------------------------------------------------------------GTAATATT---------TAAGTATTATGGAATT-A---------C-------------------------------------------------------------------GTTTTTAATTAAATTAGAATCGGACATTTAGCATATAGCTGCCATAGAAAAGA------------------------------------------------------------------TGGCAAA
droBia1 scf7180000301448:1530-1762 + TTTTTAATA-----------------------CCTCTGAAG---------------TCAGCAACAATCCTTAAAAGTTTCA-------------------------------------------------------------------------------------CATGGTG-TT---------------------------ACTAAAG-----------TTGATTATTTCTTATAACTGCAAGGATATACAAACTTCGGCTG--GCCAAAATTAAA----------------------------------------------ATCCTTTCTTGTTTTTTAATATATT--AGA--CAATTC----GTAAAATAT------------------------------------------------------------------------TTCGGATTTTATAAAT-----------------------------------------ATTTTTTAAA----AC-----T-TTAT---ATTTTTAA-A--GTTTTTATCTG------TCAAAA-----CTTTAA--------------------------------------GGTGC----GATCAC--------------------------------------------------------------------------
droTak1 scf7180000415188:4183-4395 + AAATTAACA-----------------------TTTTTGCGA---------------TTTGTA-------------------A-----------------------A-------------------------------------------------------------TCAATA-G---------------------------------------------G-----------AATTATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAAGCTAGC----------------------------------------------TTCCTTTCTTGTTTTTTAATGAAAG--GTC--CGATTA----AAAAAATGT-TTTCTACA----------TTTCGGTT-------------------------------------------------------------------AA---------TAAACACAAC------CAAAT--T---------T----C----A-----------TTGACAC-T--TTTTTGAAATC------TTTAAA-----GGTGTG--------------------------------------GGCGCC--AGA-CACCTTTTA-----------------------------------------------------------AAATCG---
droEug1 scf7180000408825:29515-29621 - AAAATTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGAAAATTCT--------------------------------------CA---------CTAATTAAATTTTT---GT-------------------AA-----C-TAAT---TTTATTTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--CGATCACCGCTCG-----------------------------------------------------------AGGGCGGCT
dm3 chrX:3215062-3215123 + TTATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGCGGCT
droSim2 x:2969374-2969491 + TCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCATCCGCAGTGAAGGCCAGATGTCTCGCCCCACGGATGAACTTTGTGATCGACTGAAAGCCGCGGGGTAT
droSec2 scaffold_10:2921428-2921532 + TTAATTGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAAAAGCATGCTAATCTGATTTT--CTCAACACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGCGGCT
droYak3 3L:21795791-21795905 + CAAGTGTTG-----------------------TTTTTTT--------------------------------------------------------------------------------ATTC-------------GGTAT-------------GCAAATGTTTTCTTTTGTG-TA--------------------------------------------------------ACATTACTGCAAGGGTATATAAGCTTCGGCAT--GCCAAGTCTGGC----------------------------------------------TTCTTTCCTTTTTTTTT-TAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTG---
droEre2 scaffold_4644:17630-17835 - TAAAAGAAA-----------------------TCAA--------------------------------------AGTTTCGTTGTTTTTTATTTATAAT-------------TGTTCATATTC-------------GGTATAGAC--------------TGCTTTTTTTAATA-TA--------------------------------------------------------TAATTATTGCATGGGTATAT--GTTTCACCTT--GTCAAAGTTTTA----------------------------------------------CATCGATCCTGTTTTTTTTTTG-TTTAAGACC------TTTCC-AATTTGA-A-----------------TAGCAAATAATTT----------------------------------------CTCG-----------TGATTTTTA---------T---------------------------------------------------------------------------------------------------------------------------------------------------ATTAA-ACTTT-----------------------------------------------------------GAATATCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droWil2
TGATCAATA-----------------------TCTTCG--TTATT--TCCT------------------------------AAGCCGTT--CTTTCGCAAACTTA-------------------------------------GAC--------------------CTTTTACA-CA--------------------------------------------------------AAAAACTTGCAAGGGTATACAAACTTTGACGC-GGTCAAAGTTAGCCCCGTCCCTCTGGTTTTTTTTTAAGGTTGG-----GCTTTTTGCAT-----------------------------------------------------------------------------------TGAAATTTTTTTTTCGATTTATCT--------------------------------------TA---------TAAATCCATT------TGA-------------------AT-----C-TCTT---TTTGTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAA--------------------------------------GGCGCC--CGATCACCGCTTG-----------------------------------------------------------AGGGCGGCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGTA------GAAAAT-----GGCCAA--------------------------------------GGC......................................................................................2612.00210010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAAAAT-----GGCCAA--------------------------------------GGCGCC--CGAT.............................................................................2512.00220000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTA------GAAAAT-----GGCCAA--------------------------------------GGCGC....................................................................................2212.00220000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC--CGATCACCGCTTG-----------------------------------------------------------AGGGC....2111.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAAAAT-----GGCCAA--------------------------------------GGCGCC--CGATC............................................................................2611.00100010
.......................................................................................................................................................................................................................................................................................................TTTTTAAGGTTGG-----GCTTTTTGCAT-----------------------------------------------------------------------------------TGAA........................................................................................................................................................................................................................................................................................................2811.00100100
........................................................................................................................................................................................................................................................ATACAAACTTTGACGC-GGTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
...........................................................................................................................................................................................................................................................................TCAAAGTTAGCCCCGTCCCTCTGG................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
..........................................................................................................................................................................................................................................................................GTCAAAGTTAGCCCCGTCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...........................................................................................................................................................................................................................................................................TCAAAGTTAGCCCCGTCCCTCTGGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000
..................................................................................................................................................................................................................................................................TGACGC-GGTCAAAGTTAGCCCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100001
............................................T--TCCT------------------------------AAGCCGTT--CTTTCGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
................................TCTTCG--TTATT--TCCT------------------------------AAGCCGTT--CTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05100010
.........................................TATT--TCCT------------------------------AAGCCGTT--CTTTCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
droVir3
TGAACAACT-----------------------TTTTTG--TTA---------------------------------------------------------ATACAGATATCCTAATCATACCCGGCTTC-------------AACTATTCACCCTG-------------TGCT-GAGCATTATTAAAAG-------------------------------G-----------TTGGGTCTGCAAGGGTATTGCATCTTCGGTGT--GCCGAAGATAGCCCT---------------------------------------------TCTTTCTCGTTTTTTTTTTT-TCGTTTTTC------ACGCC-AAATTGA-T-----------------TTTCAGTTA----------------------------------------------------------------------------------------------------------------TTT------TGCAT--GCC--AA---TTGGCTGTTTGGC----TCTTG-----TTGCGC-----CCGTTTCGGATTACCACAGC-------------------GTCGC---CTGCTGCCGCTTG-----------------------------------------------------------CTGCTGGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................T-GAGCATTATTAAAAG-------------------------------G-----------TTGGGTCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251000000000000000000000000001000000000000000000000000000000000000
............................................................................................................................................................................T-GAGCATTATTAAAAG-------------------------------G-----------TTGGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2380.131000000000000000000000000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................GTGT--GCCGAAGATAGCCCT---------------------------------------------TC...........................................................................................................................................................................................................................................................................................................................................................................................2190.111000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CGAAGATAGCCCT---------------------------------------------TCTTT........................................................................................................................................................................................................................................................................................................................................................................................18200.102000000000020000000000000000000000000000000000000000000000000000
............................................................................................................................................................................T-GAGCATTATTAAAAG-------------------------------G-----------TTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20140.071000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................................................................................T--GCCGAAGATAGCCCT---------------------------------------------TCTTTCTCGT...................................................................................................................................................................................................................................................................................................................................................................................26200.051000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................GCCGAAGATAGCCCT---------------------------------------------TCTTTCTCGTTT.................................................................................................................................................................................................................................................................................................................................................................................27200.051000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................AAAG-------------------------------G-----------TTGGGTCTGCAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000010000000000000000000000000000000
droMoj3
ATAATCATA-----------------------TTCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------ATTTCTTTTC----GTTTTCCCC-------CCATTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCC--CGATCACCACTTG-----------------------------------------------------------AGGGCGGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GGCCAG--------------------------------------GGCGCC--CGATCACCACTTG-----------------------------------------------------------AG.......2811.001100000
droGri2
TGACCAAAC-----------------------TCTTCA--CTT----------------------------------------------------------------------------------------------------------------A-------------TGTTCAAGAATAATAAATAGGTTCTTAAACTTATAGTAAATTTGAGACAAT-GCCAATTTGTCTCCGGTCTAAGAGGGTGTTTAATCTTCGACAT--GCGTCAGAAAGC----------------------------------------------CTTCTTTCTTTGTTGTTGTTG-----------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTG--------------------------------------GGCTCT--TC----------------------------------------------------------------------------ACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
dp5
TTATATGTA-----------------------CATA-----TATCTCTGTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAATTCCATATTTTGCTTTGGTTTT-----------------------------------------------------------------------C---------T----T----TATT-------TCATTTAC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--CGATCACCGCTTG-----------------------------------------------------------AGGGCGGTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................2212.0020000000002
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGTA------GAAAAT-----GGC..................................................................................................................................2011.0010100000000
droPer2
TTTTTTTAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTATTATTTTTTCATTTGATTTTACAACTAAAATTAAA---------------------------------------------------A----T---------T----T----TTTT-------TTTTTTAT-T--AATTTGATATA------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droAna3
TAATA-ATA-----------------------TAGATGC----------------------------------------------------------------------------------GTGGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------ACTGAACTGCAAGGGTATATAAACTTCGGCTCCGCCCGAAGTTAGCTTT-CCTTTCTTGTTTTTATATATTTTTAG---------------------------------------------------------------------------------------------------TATTTTTAGTTGAGTATCTGAT------------------TTGGTATTTTATTTAT-----------------------------------------TTTTTTGTTT----GT-----T-TTAT---TTTGTTTT-A--TTTTTTTGTGG-GCAA-GACAAC-----AATTAA--------------------------------------AGCACC--CAA-TACCACTT---------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................T-------------GC----------------------------------------------------------------G-----------ACTGAACTGCAAGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.50101000000
............................................................................................................................GCGCCACCTATCGGACT-------------GC----------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.408000008
...................................................................................................................................................................................................................................................AGGGTATATAAACTTCGGCTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.204400000
........................................................................................................................................................................................................................................................ATATAAACTTCGGCTCCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204040000
...........................................................................................................................GGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153000003
...............................................................................................................................CCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------ACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
................................................................................................................................................................................................................................................................................GTTAGCTTT-CCTTTCTTGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.102200000
........A-----------------------TAGATGC----------------------------------------------------------------------------------GTGGCGCCACCTATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
TAATA-ATA-----------------------TAGATGC----------------------------------------------------------------------------------GTGGCGCCACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
..........................................................................................................................TGGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
............................................................................................................................................................................................................................G-----------ACTGAACTGCAAGGGTATATAAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051100000
.........................................................................................................................GTGGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000001
................................TAGATGC----------------------------------------------------------------------------------GTGGCGCCACCTATC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051010000
.........................................................................................................................GTGGCGCCACCTATCGGACT-------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
...........................................................................................................................GGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------ACT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
.....................................................................................................................................ATCGGACT-------------GC----------------------------------------------------------------G-----------ACTGAACTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
.......................................................................................................................................................................................................................................................TATATAAACTTCGGCTCCGCCCGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051010000
...................................ATGC----------------------------------------------------------------------------------GTGGCGCCACCTATCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
.....................................GC----------------------------------------------------------------------------------GTGGCGCCACCTATCGGACT-------------GC----------------------------------------------------------------G-----------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
.......................................................................................................................................CGGACT-------------GC----------------------------------------------------------------G-----------ACTGAACTGCAAGGGTA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051010000
droBip1
TATCCGATG-----------------------TTTGCG--ATAT-------------------------------------------------------------------------ATATCC---------------------------------------------------G---------------------------------------------G-----------TTTTAACTGCAAGGGTATGTAAACTTCGGCTCCGCCCGAAGTTAGCTTT-CCTTTCTTGTTTT-ATACATATTTACTTTTATTTTTTTT--------------------------------------------------------------------------------------TATTTATTTTTTTACTTTTAATTTTTACGCTATTATTACT---------------------------------------------------A----T---------TTTTAAT-----T-GCAT---TCTATTAC-A--ATT--ATTGTAAAA---ATAAGT-----GACGGA--------------------------------------CGTGTC--GGATGACAAAATG---------------------------------------------------------CCTGAAGGACTSizeHit CountTotal NormTotal
No Reads
droKik1
TGTTTTGTGTGTGTTTTAAGCATTTAAATTTATA------------------------------------------------------------------ATATAA-------------------------------------------------------------ATAACA-A---------------------------------------------A-----------ACCAATCTGCAAGGGTATACCATTTTCGGCGT--GCCGAAGTTAGC----------------------------------------------TTCCTTTCTTGTTCAATTACA-----------------A------------TATTCTTCATTAAACCCGTATT--------------------------------------------------TTGTTAT---------------CGAATATCTACT-----------------A----T---------TTTTA------TGTAG--ATC--TA---TCG--ATT--ATTGCGTCAA--TGAAGT-----AGCTAA--------------------------------------TGCATT--ATTCTAATGCATA-----------------------------------------------------------AGAGCG---SizeHit CountTotal NormTotal
No Reads
droFic1
TTAATAGAA-----------------------AAGTCG--T------------------------------CATAGCTTCGAGGTTGTTAGCCTTTATGTATTTT-------------------------------------G------------------------------------------------------------------------------TTCGATTTGTTTGATGACTGCAAGGGTATATAAGCTTCGGCTT--GCCGAAGCTAGC----------------------------------------------TTCCTTTCTTGTTTGTCCTTCTGTTAG----------------------------------------------------------------------------------------------------------------------GGAATATT---------CTAGCTTAATTTTATT-T---------C----AT----TAT-------ATTCTAAT-T--TATTTAGT----TCAAG-----TGTTGC-----TTATTTCAAAATGGCCTA---------------------TACATT--CGAT-----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AAAAATATA-----------------------TAAAA----TATCTATCAAATAATTGAGCTGCAAATCATCATAGCTTCAATG-----------------------------------------------------------------------------------------------------------------------------------------TTTAATTCTTGCAATAGCTGCAAGGGTATATCAACTTCGGCTT--GCCGAAATTTGC----------------------------------------------TTTTTTTCTTGTTAAATCGTG-----------------C------------TTTTCTTCA------------------------------------------------------------------------------TGATTTTTA---------TAAACTCAGCTTTTGTGGCTTCTC-----TGTTT--------------------GTTTTTCC-A--TTTACACTGCG------AAAAAT-------TTGA---------------------------TCTACGATCAAAGCGCCTCCGTTCAGC------------------------------------------------------------------TGTTTGASizeHit CountTotal NormTotal
No Reads
droRho1
TTATGAGTG-----------------------TTAAGG--ATGCA--TCAT------------------------------ATGAATAA--TTTTAGAGAATATAA-------------------------------------------------------------TTTACA-G---------------------------------------------------------AATTTTTTGCAAGGGTATATCAACTTCGGTTCCGCTTGAAGTTAGCTTT---------------------------------------------CCTTTCTTGTTTTTATTTTG-TTTTTGTTC------CTTGG-GATTTG-----------------------------------------------------------------------------------------------GTAATATT---------TAAGTATTATGGAATT-A---------C-------------------------------------------------------------------GTTTTTAATTAAATTAGAATCGGACATTTAGCATATAGCTGCCATAGAAAAGA------------------------------------------------------------------TGGCAAASizeHit CountTotal NormTotal
No Reads
droBia1
TTTTTAATA-----------------------CCTCTGAAG---------------TCAGCAACAATCCTTAAAAGTTTCA-------------------------------------------------------------------------------------CATGGTG-TT---------------------------ACTAAAG-----------TTGATTATTTCTTATAACTGCAAGGATATACAAACTTCGGCTG--GCCAAAATTAAA----------------------------------------------ATCCTTTCTTGTTTTTTAATATATT--AGA--CAATTC----GTAAAATAT------------------------------------------------------------------------TTCGGATTTTATAAAT-----------------------------------------ATTTTTTAAA----AC-----T-TTAT---ATTTTTAA-A--GTTTTTATCTG------TCAAAA-----CTTTAA--------------------------------------GGTGC----GATCAC--------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AAATTAACA-----------------------TTTTTGCGA---------------TTTGTA-------------------A-----------------------A-------------------------------------------------------------TCAATA-G---------------------------------------------G-----------AATTATCTGCAAGGGTATATAAGCTTCGGCTG--GCCGAAGCTAGC----------------------------------------------TTCCTTTCTTGTTTTTTAATGAAAG--GTC--CGATTA----AAAAAATGT-TTTCTACA----------TTTCGGTT-------------------------------------------------------------------AA---------TAAACACAAC------CAAAT--T---------T----C----A-----------TTGACAC-T--TTTTTGAAATC------TTTAAA-----GGTGTG--------------------------------------GGCGCC--AGA-CACCTTTTA-----------------------------------------------------------AAATCG---SizeHit CountTotal NormTotal
No Reads
droEug1
AAAATTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAGAAAATTCT--------------------------------------CA---------CTAATTAAATTTTT---GT-------------------AA-----C-TAAT---TTTATTTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--CGATCACCGCTCG-----------------------------------------------------------AGGGCGGCTSizeHit CountTotal NormTotal
No Reads
dm3
TTATCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGCGGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--AGATCACCGCTCG-----------------------------------------------------------AGGGC....2014.0040000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGC....................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT--AGATCACCGCTCG-----------------------------------------------------------AGGGC....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGC....2212.0020000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--A................................................................................2512.0020000000000000000000000000000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACC.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------.........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--.................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCT......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-----GGCCAG--------------------------------------GGCGCT--AGATC............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACC.........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAG--------------------------------------GGCGCT--AGATCAC..........................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGTA------GAAAAT-----GGC..................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...TCGT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTC-A--GTTTCGATGTA------GAAAAT-----GGC..................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCG.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGTA------GAAAAT-----GGCCAG--------------------------------------.........................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--AGATCACCGCTCG-----------------------------------------------------------AGGGC....1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----GGCCAG--------------------------------------GGCGCT--AGATCAC..........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGA..............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------GAAAAT-----GGCCAG--------------------------------------GGCGCT--.................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACC.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATC............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCGCTCG-----------------------------------------------------------AGGGC....1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droSim2
TCGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCATCCGCAGTGAAGGCCAGATGTCTCGCCCCACGGATGAACTTTGTGATCGACTGAAAGCCGCGGGGTATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGC....................................................................................2614.00400000010000012000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AG...............................................................................2912.00200000000000020000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................1812.00200200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................2511.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................2711.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGC....................................................................................2311.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--GTTTCGATGTA------GAAAA...........................................................................................................................................1711.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--.................................................................................2811.00100000000000001000
droSec2
TTAATTGAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGCAAAAGCATGCTAATCTGATTTT--CTCAACACTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCGTTTC-A--GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGCGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGCGGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGTA------GAAAAT-----GGCCAG--------------------------------------GGC......................................................................................2611.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT--AGATCACCGCTCG-----------------------------------------------------------AGGGC....2211.0010010
droYak3
CAAGTGTTG-----------------------TTTTTTT--------------------------------------------------------------------------------ATTC-------------GGTAT-------------GCAAATGTTTTCTTTTGTG-TA--------------------------------------------------------ACATTACTGCAAGGGTATATAAGCTTCGGCAT--GCCAAGTCTGGC----------------------------------------------TTCTTTCCTTTTTTTTT-TAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTG---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
TAAAAGAAA-----------------------TCAA--------------------------------------AGTTTCGTTGTTTTTTATTTATAAT-------------TGTTCATATTC-------------GGTATAGAC--------------TGCTTTTTTTAATA-TA--------------------------------------------------------TAATTATTGCATGGGTATAT--GTTTCACCTT--GTCAAAGTTTTA----------------------------------------------CATCGATCCTGTTTTTTTTTTG-TTTAAGACC------TTTCC-AATTTGA-A-----------------TAGCAAATAATTT----------------------------------------CTCG-----------TGATTTTTA---------T---------------------------------------------------------------------------------------------------------------------------------------------------ATTAA-ACTTT-----------------------------------------------------------GAATATCTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................................................................................................................................................................................................TAT--GTTTCACCTT--GTCAAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000

Generated: 05/17/2015 at 10:56 PM