dwi_3697

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CGTTGCGGCAAGAGGAATTAGTTGTCCTGCGAGGGAAGTTGCCTCTAGAAAACGCGGCCGATGGCCAGGCAGCCAATATCAGAGCCTGCACAAAAAAAAAGCAAGGTGGGGCAGTTGCGGCCTACTTGCAAGGAGTTGGAGGAACTGGGCCATATTCTCGCCTCAATTGCTTCGAAAAATTAGCCGCAAAATTAACCGCAGCATCACAAACGAGTTTAGGGAGAAGGTAGCTCGGCTGCAAGAACTAAACG ************************************************...(((((...((..(((((.............)))))..))......((((((..((((((((.((.(((((((((.(((....))).)))...)))))).))..)).)))))).))))))..........)))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo	M020 head	V117 male body	V119 head
.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGA.............................	23	0	2	2.50	5	5	0	0	0	0
....................................................................................................................................................................................................................AGTTTAGGGAGAAGGTAGCTCGG................	23	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................................................ATCACAAACGAGTTTAGGGAGAAGGT.......................	26	0	2	1.00	2	2	0	0	0	0
........................................GCCTCTAGAAAACGCGGCCGATGG...........................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.............................................................................................AAAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................	24	0	3	1.00	3	3	0	0	0	0
...................................................................................................................................................................................................................................TAGCTCGGCTGCAAGAACTAAAC.	23	0	1	1.00	1	1	0	0	0	0
............................GCGAGGGAAGTTGCCTCTAGAAAA.......................................................................................................................................................................................................	24	0	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAGAA..........................	26	0	2	0.50	1	1	0	0	0	0
................................................................................................................................................................................................TAACCGCAGCATCACAAACGAGTTT..................................	25	0	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAGAAG.........................	27	0	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGG..............................	22	0	2	0.50	1	1	0	0	0	0
..........................................................................................................................................................................................................................GGCAGAAGGTAGCTTGACTGC............	21	3	2	0.50	1	1	0	0	0	0
...........................................................................................................................................................................................................TCACAAACGAGTTTAGGGAGAAGGT.......................	25	0	2	0.50	1	1	0	0	0	0
............................................................................................................................................................................................................CACAAACGAGTTTAGGGAGAAGGT.......................	24	0	2	0.50	1	1	0	0	0	0
.................................................................................................................................................................................................AACCGCAGCATCACAAACGAGTT...................................	23	0	2	0.50	1	1	0	0	0	0
....................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGG...............................	24	0	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAG............................	24	0	2	0.50	1	1	0	0	0	0
.........................................................................................................................................................................................GCAAAATTAACCGCAGCATCACAAAC........................................	26	0	2	0.50	1	1	0	0	0	0
......................................................................................................................................................................................................CAGCATCACAAACGAGTTTAGGGA.............................	24	0	2	0.50	1	1	0	0	0	0
...............................................................................................................................................................................................TTAACCGCAGCATCACAAACGAGTT...................................	25	0	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGGGAG............................	27	0	2	0.50	1	0	1	0	0	0
..............................................................................................AAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................	23	0	3	0.33	1	1	0	0	0	0
.............................................................................................AAAAAAAGCAAGGTGGGGCAGT........................................................................................................................................	22	0	3	0.33	1	1	0	0	0	0
.............................................................................ATAAGAACCTGCACAAAAAA..........................................................................................................................................................	20	2	3	0.33	1	0	0	1	0	0
.................................................AAACGCAGCCGATGGCCT........................................................................................................................................................................................	18	2	7	0.14	1	1	0	0	0	0
........................................................................................CAGAAATGAAAAGCAAGGTGG..............................................................................................................................................	21	3	8	0.13	1	0	0	0	0	1
................................................................................................................................................................................................................AACGAGTTTAGGGAGAAGGT.......................	20	0	8	0.13	1	1	0	0	0	0
........................................................................................................GGTCGGGTAGTTGGGGCCT................................................................................................................................	19	3	10	0.10	1	1	0	0	0	0
..............................................................................................AAAAAAGCAAGGTGGGGCA..........................................................................................................................................	19	0	10	0.10	1	1	0	0	0	0
.............................................................................................AAAAAAAGCAAGGTGGGG............................................................................................................................................	18	0	11	0.09	1	1	0	0	0	0
.............................................................................................................................................................................................................................AGAAGGTAGCTTGACTGCGAG.........	21	3	13	0.08	1	0	0	0	1	0
.......................................TGCCTCTAGAAAGCGCGGCCG...............................................................................................................................................................................................	21	1	13	0.08	1	1	0	0	0	0
...............................................................................................................................................................................................................................AAGGTAGCTTGACTGCGAGA........	20	3	14	0.07	1	1	0	0	0	0
...............................................................................................................................................................................................................................AAGGGAGCTTGGCTGCGAGA........	20	3	15	0.07	1	1	0	0	0	0
..............................................................................................................GCAGATGCGGACTACCTGC..........................................................................................................................	19	3	16	0.06	1	0	0	0	0	1
...............................................................................................................................................................................................................................AAGGGAGCTCGACTGCGAGA........	20	3	17	0.06	1	0	0	0	1	0
..................................................GACGCGGGCGATGGGCAGG......................................................................................................................................................................................	19	3	19	0.05	1	0	0	0	1	0
........................................................GCCGATGGACATGAAGCCAA...............................................................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0
..............................................................................................................GAAGATGCGGCCTACCTGC..........................................................................................................................	19	3	20	0.05	1	0	0	0	0	1
............................................................................................................................................................................CGAAAAAATAGCCGGAAAAG...........................................................	20	3	20	0.05	1	1	0	0	0	0
..........................................................................................................................................................................................................................GGCAGATGGTAGCTCGGTT..............	19	3	20	0.05	1	0	0	0	1	0

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGTTGCGGCAAGAGGAATTAGTTGTCCTGCGAGGGAAGTTGCCTCTAGAAAACGCGGCCGATGGCCAGGCAGCCAATATCAGAGCCTGCACAAAAAAAAAGCAAGGTGGGGCAGTTGCGGCCTACTTGCAAGGAGTTGGAGGAACTGGGCCATATTCTCGCCTCAATTGCTTCGAAAAATTAGCCGCAAAATTAACCGCAGCATCACAAACGAGTTTAGGGAGAAGGTAGCTCGGCTGCAAGAACTAAACG
**************************************************...(((((...((..(((((.............)))))..))......((((((..((((((((.((.(((((((((.(((....))).)))...)))))).))..)).)))))).))))))..........)))))..............**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

M020
head

V117
male body

V119
head

.......................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGA.............................

2.50

....................................................................................................................................................................................................................AGTTTAGGGAGAAGGTAGCTCGG................

1.00

..........................................................................................................................................................................................................ATCACAAACGAGTTTAGGGAGAAGGT.......................

1.00

........................................GCCTCTAGAAAACGCGGCCGATGG...........................................................................................................................................................................................

1.00

.............................................................................................AAAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................

1.00

...................................................................................................................................................................................................................................TAGCTCGGCTGCAAGAACTAAAC.

1.00

............................GCGAGGGAAGTTGCCTCTAGAAAA.......................................................................................................................................................................................................

1.00

0.50

................................................................................................................................................................................................TAACCGCAGCATCACAAACGAGTTT..................................

0.50

..........................................................................................................................................................................................................................GGCAGAAGGTAGCTTGACTGC............

0.50

...........................................................................................................................................................................................................TCACAAACGAGTTTAGGGAGAAGGT.......................

0.50

............................................................................................................................................................................................................CACAAACGAGTTTAGGGAGAAGGT.......................

0.50

.................................................................................................................................................................................................AACCGCAGCATCACAAACGAGTT...................................

0.50

....................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGG...............................

0.50

.........................................................................................................................................................................................GCAAAATTAACCGCAGCATCACAAAC........................................

0.50

......................................................................................................................................................................................................CAGCATCACAAACGAGTTTAGGGA.............................

0.50

...............................................................................................................................................................................................TTAACCGCAGCATCACAAACGAGTT...................................

0.50

....................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGGGAG............................

0.50

..............................................................................................AAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................

0.33

.............................................................................................AAAAAAAGCAAGGTGGGGCAGT........................................................................................................................................

0.33

.............................................................................ATAAGAACCTGCACAAAAAA..........................................................................................................................................................

0.33

.................................................AAACGCAGCCGATGGCCT........................................................................................................................................................................................

0.14

........................................................................................CAGAAATGAAAAGCAAGGTGG..............................................................................................................................................

0.13

................................................................................................................................................................................................................AACGAGTTTAGGGAGAAGGT.......................

0.13

........................................................................................................GGTCGGGTAGTTGGGGCCT................................................................................................................................

0.10

..............................................................................................AAAAAAGCAAGGTGGGGCA..........................................................................................................................................

0.10

.............................................................................................AAAAAAAGCAAGGTGGGG............................................................................................................................................

0.09

.............................................................................................................................................................................................................................AGAAGGTAGCTTGACTGCGAG.........

0.08

.......................................TGCCTCTAGAAAGCGCGGCCG...............................................................................................................................................................................................

0.08

...............................................................................................................................................................................................................................AAGGTAGCTTGACTGCGAGA........

0.07

...............................................................................................................................................................................................................................AAGGGAGCTTGGCTGCGAGA........

0.07

..............................................................................................................GCAGATGCGGACTACCTGC..........................................................................................................................

0.06

...............................................................................................................................................................................................................................AAGGGAGCTCGACTGCGAGA........

0.06

..................................................GACGCGGGCGATGGGCAGG......................................................................................................................................................................................

0.05

........................................................GCCGATGGACATGAAGCCAA...............................................................................................................................................................................

0.05

..............................................................................................................GAAGATGCGGCCTACCTGC..........................................................................................................................

0.05

............................................................................................................................................................................CGAAAAAATAGCCGGAAAAG...........................................................

0.05

..........................................................................................................................................................................................................................GGCAGATGGTAGCTCGGTT..............

0.05

GCAACGCCGTTCTCCTTAATCAACAGGACGCTCCCTTCAACGGAGATCTTTTGCGCCGGCTACCGGTCCGTCGGTTATAGTCTCGGACGTGTTTTTTTTTCGTTCCACCCCGTCAACGCCGGATGAACGTTCCTCAACCTCCTTGACCCGGTATAAGAGCGGAGTTAACGAAGCTTTTTAATCGGCGTTTTAATTGGCGTCGTAGTGTTTGCTCAAATCCCTCTTCCATCGAGCCGACGTTCTTGATTTGC ************************************************...(((((...((..(((((.............)))))..))......((((((..((((((((.((.(((((((((.(((....))).)))...)))))).))..)).)))))).))))))..........)))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M045 female body	V118 embryo
.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATCCCT.............................	25	0	2	10.50	21	13	8
...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCCT.............................	27	0	2	10.50	21	20	1
.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGTT..........................................	24	0	2	9.50	19	4	15
......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCT.............................	24	0	2	5.50	11	6	5
........................................................................................................................................................................................................CGTAGTGTTTGCTCAAATCCCTCTT..........................	25	0	2	4.00	8	4	4
..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAAT.................................	24	0	2	2.50	5	4	1
..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCCCT.............................	28	0	2	2.00	4	4	0
..........................................................................................................................................................................................GTTTTAATTGGCGTCGTAGTGTT..........................................	23	0	2	1.50	3	0	3
..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCCC..............................	27	0	2	1.50	3	3	0
.......................................................................................................................................................................................GGCGTTTTAATTGGCGTCGTAGTGTT..........................................	26	0	1	1.00	1	0	1
.....................................................................GTCGGTTATAGTCTCGGACGTGTTT.............................................................................................................................................................	25	0	1	1.00	1	1	0
........................................................................................................................................................................................................CGTAGTGTTTGCTCAAATCCCTCT...........................	24	0	2	1.00	2	2	0
.........................................................GGCTACCGGTCCGTCGGTTATAGT..........................................................................................................................................................................	24	0	1	1.00	1	1	0
.........................................................................................................................................................................GAAGCTTTTTAATCGGCGTTTTAATT........................................................	26	0	1	1.00	1	0	1
......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCTCT...........................	26	0	2	1.00	2	1	1
............................................................................................................CCCGTCAACGCCGGATGAACGTTCCT.....................................................................................................................	26	0	1	1.00	1	1	0
...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCTT.............................	27	1	2	0.50	1	0	1
.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATACCT.............................	25	1	2	0.50	1	0	1
.................................................................................................................................................................................................TTGGCGTCGTAGTGTTTGCTCAAAT.................................	25	0	2	0.50	1	1	0
..........................................................................................................................................................................................GTTTTAATTGGCGTCGTAGTGTTT.........................................	24	0	2	0.50	1	0	1
.........................................................................................................................................................................................................GTAGTGTTTGCTCAAATCCCTCTT..........................	24	0	2	0.50	1	0	1
.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATCCCG.............................	25	1	2	0.50	1	1	0
........................................................................................................................................................................................TCGTTTTAATTGGCGTCGTAGTGTT..........................................	25	1	2	0.50	1	0	1
..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCC...............................	26	0	2	0.50	1	0	1
.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGTTT.........................................	25	0	2	0.50	1	0	1
.....................................................................................................................................................................................................CGTCGTGGTGTTTGCTCAAATCCCTCT...........................	27	1	2	0.50	1	1	0
...................................................................................................................................................................................................GGCGTCGAAGTGTTTGCTCAAATCCCT.............................	27	1	2	0.50	1	1	0
.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGT...........................................	23	0	2	0.50	1	0	1
.........................................................................................................................................................................................................GTAGTGTTTGCTCAAATCCCTCT...........................	23	0	2	0.50	1	1	0
......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCTCTT..........................	27	0	2	0.50	1	0	1
....................................................................................................................................................................................................GCGTCGTAGTGTTTGCTCAAATCCCT.............................	26	0	2	0.50	1	1	0
..........................................................................................................................................................................................GTTTTAATTGGCTTCGTAGTGTTT.........................................	24	1	2	0.50	1	0	1
..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAA..................................	23	0	2	0.50	1	1	0
...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCCTCT...........................	29	0	2	0.50	1	1	0
....................................................................................................................................................................................................GCGTCGTGGTGTTTGCTCAAATCCCT.............................	26	1	2	0.50	1	0	1
..............................................................................................TTTTTTCGTTCCACCCCGTCAACGC....................................................................................................................................	25	0	3	0.33	1	1	0
.............................................................................................................................................................................................TTAATTGGCGTCGTAGTGTT..........................................	20	0	6	0.17	1	1	0
....................................................................................................................................................CGGTACAACAGTGGAGTTAA...................................................................................	20	3	12	0.17	2	2	0
...........................................................................................................................................................................................................CGTAGTTGCTCAAATCCCTCTT..........................	22	3	8	0.13	1	1	0
........................................................................................................................................................................................GCGTTTTATTTGGCGTCGTAGTGTT..........................................	25	1	9	0.11	1	0	1
..................................................................................................................AACGCCGGATGAACGTTGCTCAACCT...............................................................................................................	26	1	13	0.08	1	1	0

GCAACGCCGTTCTCCTTAATCAACAGGACGCTCCCTTCAACGGAGATCTTTTGCGCCGGCTACCGGTCCGTCGGTTATAGTCTCGGACGTGTTTTTTTTTCGTTCCACCCCGTCAACGCCGGATGAACGTTCCTCAACCTCCTTGACCCGGTATAAGAGCGGAGTTAACGAAGCTTTTTAATCGGCGTTTTAATTGGCGTCGTAGTGTTTGCTCAAATCCCTCTTCCATCGAGCCGACGTTCTTGATTTGC
**************************************************...(((((...((..(((((.............)))))..))......((((((..((((((((.((.(((((((((.(((....))).)))...)))))).))..)).)))))).))))))..........)))))..............**************************************************

Read size

# Mismatch

Hit Count

Total Norm

Total

M045
female body

V118
embryo

.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATCCCT.............................

10.50

...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCCT.............................

10.50

.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGTT..........................................

9.50

......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCT.............................

5.50

........................................................................................................................................................................................................CGTAGTGTTTGCTCAAATCCCTCTT..........................

4.00

..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAAT.................................

2.50

..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCCCT.............................

2.00

..........................................................................................................................................................................................GTTTTAATTGGCGTCGTAGTGTT..........................................

1.50

..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCCC..............................

1.50

.......................................................................................................................................................................................GGCGTTTTAATTGGCGTCGTAGTGTT..........................................

1.00

.....................................................................GTCGGTTATAGTCTCGGACGTGTTT.............................................................................................................................................................

1.00

........................................................................................................................................................................................................CGTAGTGTTTGCTCAAATCCCTCT...........................

1.00

.........................................................GGCTACCGGTCCGTCGGTTATAGT..........................................................................................................................................................................

1.00

.........................................................................................................................................................................GAAGCTTTTTAATCGGCGTTTTAATT........................................................

1.00

......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCTCT...........................

1.00

............................................................................................................CCCGTCAACGCCGGATGAACGTTCCT.....................................................................................................................

1.00

...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCTT.............................

0.50

.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATACCT.............................

0.50

.................................................................................................................................................................................................TTGGCGTCGTAGTGTTTGCTCAAAT.................................

0.50

..........................................................................................................................................................................................GTTTTAATTGGCGTCGTAGTGTTT.........................................

0.50

.........................................................................................................................................................................................................GTAGTGTTTGCTCAAATCCCTCTT..........................

0.50

.....................................................................................................................................................................................................CGTCGTAGTGTTTGCTCAAATCCCG.............................

0.50

........................................................................................................................................................................................TCGTTTTAATTGGCGTCGTAGTGTT..........................................

0.50

..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAATCC...............................

0.50

.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGTTT.........................................

0.50

.....................................................................................................................................................................................................CGTCGTGGTGTTTGCTCAAATCCCTCT...........................

0.50

...................................................................................................................................................................................................GGCGTCGAAGTGTTTGCTCAAATCCCT.............................

0.50

.........................................................................................................................................................................................CGTTTTAATTGGCGTCGTAGTGT...........................................

0.50

.........................................................................................................................................................................................................GTAGTGTTTGCTCAAATCCCTCT...........................

0.50

......................................................................................................................................................................................................GTCGTAGTGTTTGCTCAAATCCCTCTT..........................

0.50

....................................................................................................................................................................................................GCGTCGTAGTGTTTGCTCAAATCCCT.............................

0.50

..........................................................................................................................................................................................GTTTTAATTGGCTTCGTAGTGTTT.........................................

0.50

..................................................................................................................................................................................................TGGCGTCGTAGTGTTTGCTCAAA..................................

0.50

...................................................................................................................................................................................................GGCGTCGTAGTGTTTGCTCAAATCCCTCT...........................

0.50

....................................................................................................................................................................................................GCGTCGTGGTGTTTGCTCAAATCCCT.............................

0.50

..............................................................................................TTTTTTCGTTCCACCCCGTCAACGC....................................................................................................................................

0.33

.............................................................................................................................................................................................TTAATTGGCGTCGTAGTGTT..........................................

0.17

....................................................................................................................................................CGGTACAACAGTGGAGTTAA...................................................................................

0.17

...........................................................................................................................................................................................................CGTAGTTGCTCAAATCCCTCTT..........................

0.13

........................................................................................................................................................................................GCGTTTTATTTGGCGTCGTAGTGTT..........................................

0.11

..................................................................................................................AACGCCGGATGAACGTTGCTCAACCT...............................................................................................................

0.08

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004954:1882048-1882298 +	dwi_3697	CGTTGC--------------GGCAAGAGGAATTAGTTGTCCTGCGAGGGAAGTTGCCTCTAGAAAACGCGGCCGATGGCCAGGCAGCCAATATCAGAGCCTGCACAAAAAAAAAGCAAGGTGGGGCAGTTGCGGCCTACTTGCAAGGAGTTGGAGGAACTGGGCCATATTCTCGCCTCAATTGCTTCGAAAAATTAGCCGCAAAATTAACCGCAGCATCACAAACGAGTTTAGGGAGAAGGTAGCTCGGCTGCAAGAACTAAACG
droKik1	scf7180000298138:3326-3411 -		GGCTGCTGCTCTTGATCCTTGGCAGGAGGTA---------------------------GTGGAAAACGGGT----------GAAACCCAAACCCAGGGCTCGCACAGAAGAAAAGTAAGGTGG----------------------------------------------------------------------------------------------------------------------------------------------

Species

Coordinate

Alignment

droWil2

scf2_1100000004954:1882048-1882298 +

dwi_3697

CGTTGC--------------GGCAAGAGGAATTAGTTGTCCTGCGAGGGAAGTTGCCTCTAGAAAACGCGGCCGATGGCCAGGCAGCCAATATCAGAGCCTGCACAAAAAAAAAGCAAGGTGGGGCAGTTGCGGCCTACTTGCAAGGAGTTGGAGGAACTGGGCCATATTCTCGCCTCAATTGCTTCGAAAAATTAGCCGCAAAATTAACCGCAGCATCACAAACGAGTTTAGGGAGAAGGTAGCTCGGCTGCAAGAACTAAACG

droKik1

scf7180000298138:3326-3411 -

GGCTGCTGCTCTTGATCCTTGGCAGGAGGTA---------------------------GTGGAAAACGGGT----------GAAACCCAAACCCAGGGCTCGCACAGAAGAAAAGTAAGGTGG----------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

CGTTGC--------------GGCAAGAGGAATTAGTTGTCCTGCGAGGGAAGTTGCCTCTAGAAAACGCGGCCGATGGCCAGGCAGCCAATATCAGAGCCTGCACAAAAAAAAAGCAAGGTGGGGCAGTTGCGGCCTACTTGCAAGGAGTTGGAGGAACTGGGCCATATTCTCGCCTCAATTGCTTCGAAAAATTAGCCGCAAAATTAACCGCAGCATCACAAACGAGTTTAGGGAGAAGGTAGCTCGGCTGCAAGAACTAAACG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGA.............................	23	2	2.50	5	0	5	0	0	0
..................................................................................................................................................................................................................................AGTTTAGGGAGAAGGTAGCTCGG................	23	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................ATCACAAACGAGTTTAGGGAGAAGGT.......................	26	2	1.00	2	0	2	0	0	0
......................................................GCCTCTAGAAAACGCGGCCGATGG...........................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
...........................................................................................................AAAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................	24	3	1.00	3	0	3	0	0	0
.................................................................................................................................................................................................................................................TAGCTCGGCTGCAAGAACTAAAC.	23	1	1.00	1	0	1	0	0	0
..........................................GCGAGGGAAGTTGCCTCTAGAAAA.......................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAGAA..........................	26	2	0.50	1	0	1	0	0	0
..............................................................................................................................................................................................................TAACCGCAGCATCACAAACGAGTTT..................................	25	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAGAAG.........................	27	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGG..............................	22	2	0.50	1	0	1	0	0	0
.........................................................................................................................................................................................................................TCACAAACGAGTTTAGGGAGAAGGT.......................	25	2	0.50	1	0	1	0	0	0
..........................................................................................................................................................................................................................CACAAACGAGTTTAGGGAGAAGGT.......................	24	2	0.50	1	0	1	0	0	0
...............................................................................................................................................................................................................AACCGCAGCATCACAAACGAGTT...................................	23	2	0.50	1	0	1	0	0	0
..................................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGG...............................	24	2	0.50	1	0	0	0	1	0
.....................................................................................................................................................................................................................AGCATCACAAACGAGTTTAGGGAG............................	24	2	0.50	1	0	1	0	0	0
.......................................................................................................................................................................................................GCAAAATTAACCGCAGCATCACAAAC........................................	26	2	0.50	1	0	1	0	0	0
....................................................................................................................................................................................................................CAGCATCACAAACGAGTTTAGGGA.............................	24	2	0.50	1	0	1	0	0	0
.............................................................................................................................................................................................................TTAACCGCAGCATCACAAACGAGTT...................................	25	2	0.50	1	0	0	0	1	0
..................................................................................................................................................................................................................CGCAGCATCACAAACGAGTTTAGGGAG............................	27	2	0.50	1	0	0	0	1	0
............................................................................................................AAAAAAGCAAGGTGGGGCAGTTG......................................................................................................................................	23	3	0.33	1	0	1	0	0	0
...........................................................................................................AAAAAAAGCAAGGTGGGGCAGT........................................................................................................................................	22	3	0.33	1	0	1	0	0	0
..............................................................................................................................................................................................................................AACGAGTTTAGGGAGAAGGT.......................	20	8	0.13	1	0	1	0	0	0
............................................................................................................AAAAAAGCAAGGTGGGGCA..........................................................................................................................................	19	10	0.10	1	0	1	0	0	0
...........................................................................................................AAAAAAAGCAAGGTGGGG............................................................................................................................................	18	11	0.09	1	0	1	0	0	0

droKik1

GGCTGCTGCTCTTGATCCTTGGCAGGAGGTA---------------------------GTGGAAAACGGGT----------GAAACCCAAACCCAGGGCTCGCACAGAAGAAAAGTAAGGTGG----------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dwi_3697

scf2_1100000004954:1882098-1882248 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-46.6	-46.4