dwi_3695

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGACTTGGCATGGATGAATATCAATATTTGTTACTCTTTGTGTATGTTAGGTAAGTAAATATATACTGTTCTGCTTTCACCTTATGCCCTAATGAAGAAAACGAAAGAAAAATATCAAAGAAGCTTACTTCGACTGTTTTTTTTTTAATCGTTTATTTTAGAAAAAGAACAACAATTAACGATAGATTTAAATAACAACAGGAAGGATAGAACAGGGAAGTAGTTGAATTTAGAGAAGAAAAAACGGCCGT ************************************************................((((((..((((..............(((((.((((((((((((((((.....((((....))))...))))))))))....)))))).))))))))).))))))..............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V117 male body	V118 embryo	M045 female body	M020 head
.............................................................................................................................................................................................................GATAGAACAGGGAAGTAGTT..........................	20	0	1	1.00	1	1	0	0	0
....TTGGCATGGATGAATATCAATATTTGT............................................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0
.......................ATATTTGTTACTCTTTGTGT................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0
................................................................................CTTATGCCCTAATGAAGAAAACG....................................................................................................................................................	23	0	1	1.00	1	1	0	0	0
.........................................................................CTTTCACCTTATAACCTGATG.............................................................................................................................................................	21	3	7	0.14	1	0	0	1	0
.......................................................................................................................................................................................................AGGAAGGGTAGAACAGAG..................................	18	2	8	0.13	1	0	1	0	0
TGAGTTGGCAGGGATGAA.........................................................................................................................................................................................................................................	18	2	8	0.13	1	1	0	0	0
...................................................................................ATGCTCTGGTGAAGAAAACG....................................................................................................................................................	20	3	10	0.10	1	1	0	0	0
..........................................................................TTTCACCTTATAACCTGATG.............................................................................................................................................................	20	3	15	0.07	1	0	0	1	0
.....................................................................................................................................................................................................................................TTGGTGAAGAAAAAACGG....	18	2	19	0.05	1	0	0	1	0
..........................................................................................................................ACTTACTTCGACTGTATT...............................................................................................................	18	2	20	0.05	1	0	0	0	1
...............................................................................................................................................................................................................................TAGAGTTTGGAGAAGAAAAAA.......	21	3	20	0.05	1	0	0	1	0
.......................................................................................................................................................................................................ATGAAGTATTGAACAGGGAAG...............................	21	3	20	0.05	1	0	1	0	0

ACTGAACCGTACCTACTTATAGTTATAAACAATGAGAAACACATACAATCCATTCATTTATATATGACAAGACGAAAGTGGAATACGGGATTACTTCTTTTGCTTTCTTTTTATAGTTTCTTCGAATGAAGCTGACAAAAAAAAAATTAGCAAATAAAATCTTTTTCTTGTTGTTAATTGCTATCTAAATTTATTGTTGTCCTTCCTATCTTGTCCCTTCATCAACTTAAATCTCTTCTTTTTTGCCGGCA ************************************************................((((((..((((..............(((((.((((((((((((((((.....((((....))))...))))))))))....)))))).))))))))).))))))..............................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V118 embryo
..........................................................................................................................TGAATGAAGCTGACATAA...............................................................................................................	18	2	20	0.05	1	1

Species	Coordinate	ID	Alignment
droWil2	scf2_1100000004954:1743125-1743375 +	dwi_3695	TGACTTGGCATGGATGAATATCAATATTTGTTACTCTTTGTGTATGTTAGGTAAGTAAATATATACTGTTCTGCTTTCACCTTATGCCCTAATGAAGAAAACGAAAGAAAAATATCA----AAGAAGCTTACTTCGACTGTTTTTT--TTTTAATC---GTTTATTT-------TA-GA-----------------------AAA---A-GAACA---ACAATTAACGATAGATTTAAAT--------AACAACAGGAAGGATAGAACAGGGAAGTA--GTTGAATTT--AGAGAAG-A-----------------------------------------------------------------------------AAAAACGGCCGT
droVir3	scaffold_11642:879-992 +		TTTTTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------T---TTTTATTT-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAACATTTTACA--------AGGGGAAACTAAGACAAACAAAGAAGGAA--AGGGTATTT--TGTGGGG-A-----------------------------------------------------------------------------GTAGAAAGTTGT
droMoj3	scaffold_6496:8322323-8322384 +		CGATCTGCCCTGGATGAACATCAATATTTGCTATTCCATATGCATGCTGAGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTAT
droGri2	scaffold_15245:12277665-12277722 -		CGATCGGCCCTGGATGAACATCAATATATGCTACTCTCTCTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA
dp5	Unknown_group_778:11686-11823 +		TTACCTTGTCTTTTTT----------------------------------------------------------------------------------------------------------------------------------TTAA----TTT--TTTTTTTATTCATATTA-AA-AATAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------AATATAAAA--ATTA--GAATA----------------------------------AAAATATATAGCGTATACAT----ATTTATGGACCA--GACTTGCGGGACTGCCGT
droPer2	scaffold_6:3831634-3831755 +		TTTTTTTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------TT---TTTCATTT-------TA-AA-AATAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------AATATAAAA--ATTA--GAATA----------------------------------AAAATATATAGCGTATACAT----ATATATGGACCA--GACTTGCGGGACTGCCGT
droAna3	scaffold_8935:2556-2675 -		TTTTTTTTTTAA----------------------------------------------------------------------------------------------------------------------------------------------TC---GGTTTATT-------TACAA-----------------------GTTTAATAAAATA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-TA--GTGGAAATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCGC
droBip1	scf7180000394537:42432-42553 -		TTTTTTTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------TGTACTTTTGTTT-------TA-TT-----------------------------AATATCAACAACAAT-----TAAC----------ATACATA---------------------------AATATAACC--ATAA--TAATAAG----------------------------------GGTGGAAAGG---TGGTT----GTTCATGGATTGAGTGCGGGCGGGACGACCGC
droKik1	scf7180000302387:657495-657665 -		AAAGAGAAAT-------------------------------------------------------------------------------------------------------GTTGTTTATGCATGGGTCCTTCGGACGTTTTTTTTTTGTATTC---TTTTATTT-------GA-AA-AA----ACATA-AAACATAACATTT---AAG-----------------------------------------------------------------ACTATAACT--ACAT--AAGTA-----------ACACAGGGTTGATGGGAAGGACAAACAGAAACAGTGTAGAGGGCC----GTA----------TCGCGCGGTACCGCCGC
droFic1	scf7180000453955:712752-712807 +		CGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTTTGCATGTTAGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
droEle1	scf7180000491217:424454-424509 +		CGATCTACCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGTTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
droRho1	scf7180000766409:476341-476396 -		CGATCTGCCATGGATGAATATCAACATATGCTATTCGCTCTGCATGTTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
droBia1	scf7180000302292:3563243-3563302 +		CGACCTGCCCTGGATGAACATCAACATCTGCTACTCGCTGTGCATGTTGGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAT
droTak1	scf7180000414433:9162-9268 +		ACATCAGTGCAGTT---------------------------------------------------------------------------------------------------------------------------------TTTTTGCCTTTTT---TTTTATTT-------AA-CGGTA-----------------------------ATTTAG-------TACAAGATACTTTTTAATAT-------------------------------------ACAT-------------ATAAAGGGTTATT-----------------------------------------GCT------------G--GGTTTGCGGTACTGCCAT
droEug1	scf7180000409462:3459809-3459864 -		GGATCTGTCCTGGATGAACATTAACATATGCTATTCGCTGTGCATGTTGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
dm3	chr2L:22553590-22553707 +		GACTAACTTTT-----------------------------------------------------------------------------------------------------------------------------------------TTTTATTC---GTTTATTT-------GA-CA-----------------------TCT---AAGATTAAAATTAAT-----TAAA----------GTAAATAAC-------------------------AATGTAAAA--ACAA--CAGTAATAGAGGGCAAAT-----------------------------------------CCAGATC-----------CCCCAGCGGTATGGCCGT
droSim2	2r:3451272-3451327 -		GGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
droSec2	scaffold_26:105334-105435 +		TTTTTTTTTAAT----------------------------------------------------------------------------------------------------------------------------------------------TC---GTTTATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTTAACTATTTTCAATAT----AACATT--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCGT
droYak3	2L:15332103-15332158 -		TGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTATGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--
droEre2	scaffold_4929:19956675-19956730 +		GGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droWil2

TGACTTGGCATGGATGAATATCAATATTTGTTACTCTTTGTGTATGTTAGGTAAGTAAATATATACTGTTCTGCTTTCACCTTATGCCCTAATGAAGAAAACGAAAGAAAAATATCA----AAGAAGCTTACTTCGACTGTTTTTT--TTTTAATC---GTTTATTT-------TA-GA-----------------------AAA---A-GAACA---ACAATTAACGATAGATTTAAAT--------AACAACAGGAAGGATAGAACAGGGAAGTA--GTTGAATTT--AGAGAAG-A-----------------------------------------------------------------------------AAAAACGGCCGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................................................................................GATAGAACAGGGAAGTA--GTT..........................................................................................................	20	1	1.00	1	0	0	1	0	0
....TTGGCATGGATGAATATCAATATTTGT.....................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................ATATTTGTTACTCTTTGTGT.........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
................................................................................CTTATGCCCTAATGAAGAAAACG.............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0

droVir3

TTTTTTTTTTTT-----------------------------------------------------------------------------------------------------------------------------------------------T---TTTTATTT-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAACATTTTACA--------AGGGGAAACTAAGACAAACAAAGAAGGAA--AGGGTATTT--TGTGGGG-A-----------------------------------------------------------------------------GTAGAAAGTTGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAAC............................................................................................................................................................	28	4	10.75	43	0	0	2	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	10	1	13	0	0	0	0	0	0	4	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGGA......................................................................................................................................	26	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	3	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGGAA.....................................................................................................................................	27	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGG.......................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGGAAAC...................................................................................................................................	29	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGGAAA....................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCT................................................................................................................................................................	24	4	1.50	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------............................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAA.............................................................................................................................................................	27	4	1.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAAGACAAACAAAGAAGGAA--AGGGT........................................................................................................	25	20	0.75	15	0	0	0	0	1	0	0	0	1	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	1	1	5	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAAC............................................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTA..............................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAA.............................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTT...............................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAAGACAAACAAAGAAGGAA--AGGGTA.......................................................................................................	26	20	0.45	9	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTAACATTTTACA--------AGGGGA......................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAACAAAGAAGGAA--AGGGTATTT--TG................................................................................................	25	13	0.31	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTAAGACAAACAAAGAAGGAA--AGGG.........................................................................................................	26	20	0.30	6	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACA...................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................TG-GA-----------------------AGAAAAGAAAATA-------ACAGC.................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGC.................................................................................................................................................................	23	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................AAGAAAATA-------ACAGCTTAA.............................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TT-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCT................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TT-------TG-GA-----------------------AGAAAAGAAAATA-------ACAGCTTAAC............................................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................TA-------ACAGCTTAACATTTTACA--------AGGGGG......................................................................................................................................	26	17	0.12	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CTTAACATTTTACA--------AGGGG.......................................................................................................................................	19	19	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAAGACAAACAAAGAAGGAA--AGGGTAT......................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................ACAAACAAAGAAGGAA--AGGGTATTT--..................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAAGACAAACAAAGAAGGAA--AGGG.........................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AAACAAAGAAGGAA--AGGGTATTT--TGT...............................................................................................	26	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................AACAAAGAAGGAA--AGGGTATTT--TGT...............................................................................................	25	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--TGTGGGG-A-----------------------------------------------------------------------------GTAGAAAGTTGT	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................AAGAAGGAA--AGGGTATTT--TGTGGGG-..........................................................................................	25	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................AGGGTATTT--TGTGGGG-A-----------------------------------------------------------------------------GTAG........	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................AAGAAGGAA--AGGGTATTT--TGTGGGG-A-----------------------------------------------------------------------------............	26	15	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................AA--AGGGTATTT--TGTGGGG-A-----------------------------------------------------------------------------G...........	20	16	0.06	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................AAGGAA--AGGGTATTT--TGTGGG............................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GCTTAACATTTTACA--------AGG.........................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTATTT-------TG-GA-----------------------AGAAAAGAAAA...............................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGACAAACAAAGAAGGAA--AGGG.........................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AAGACAAACAAAGAAGGAA--AGGGTATT.....................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................AAGACAAACAAAGAAGGAA--AGGGTAT......................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TAAGACAAACAAAGAAGGAA--A............................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................AGACAAACAAAGAAGGAA--AGGGTATTT--..................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................ATTT-------TG-GA-----------------------AGAAAAGAAAATT-------T.....................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................T-------TG-GA-----------------------AGAAAAGAAAATA-------......................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................CTAAGACAAACAAAGAAGGAA--AGGGTA.......................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AACTAAGACAAACAAAGAAGGAA--.............................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................AACTAAGACAAACAAAGAAGGAA--AGGGT........................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACTAAGACAAACAAAGAAGGAA--AGGGT........................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGATCTGCCCTGGATGAACATCAATATTTGCTATTCCATATGCATGCTGAGTAAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGGTAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
CGATCTGCCCTGGATGAACATCA.............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
...........GGATGAACATCAATATTTGCTA...................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.GATCTGCCCTGGATGAACATCA.............................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0

droGri2

CGATCGGCCCTGGATGAACATCAATATATGCTACTCTCTCTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dp5

TTACCTTGTCTTTTTT----------------------------------------------------------------------------------------------------------------------------------TTAA----TTT--TTTTTTTATTCATATTA-AA-AATAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------AATATAAAA--ATTA--GAATA----------------------------------AAAATATATAGCGTATACAT----ATTTATGGACCA--GACTTGCGGGACTGCCGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACT..............	28	2	293.00	586	0	491	80	0	1	0	2	8	4	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GACT..............	29	2	137.00	274	0	196	77	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GAC...............	27	2	90.50	181	0	129	28	0	2	0	0	9	13	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GA................	26	2	75.00	150	0	75	0	0	0	0	0	44	31	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GAC...............	28	2	64.50	129	0	109	19	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GA................	27	2	47.00	94	0	82	6	0	0	0	1	3	2	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--G.................	25	2	30.50	61	0	27	0	0	1	0	0	21	12	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GACT..............	27	2	26.50	53	0	52	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--G.................	26	2	22.50	45	0	37	0	0	1	0	0	5	2	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACC.....................	24	2	20.00	40	0	38	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GACC..............	29	2	13.50	27	0	3	23	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACC.....................	23	2	10.00	20	1	19	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACC..............	28	2	7.00	14	0	0	14	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--..................	25	2	6.50	13	0	11	0	0	0	0	2	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACA..............	28	2	6.50	13	0	13	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGAC......................	22	2	6.00	12	0	12	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------A...............................................................................................................	27	5	5.20	26	0	0	0	0	0	0	0	22	4	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GACA..............	29	2	5.00	10	0	9	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGAC......................	23	2	4.00	8	0	6	0	0	0	0	2	0	0	0
......................................................................................................................................................................................TAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------AA..............................................................................................................	28	5	3.80	19	0	0	0	0	0	0	0	17	2	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GAA...............	27	2	3.50	7	0	3	1	0	0	0	0	3	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GAC...............	26	2	3.50	7	0	7	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--G.................	24	2	3.50	7	0	7	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GA................	25	2	3.50	7	0	7	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTATACAT----ATTTATGGACCA--GACT..............	24	2	3.50	7	0	7	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTATGGACCA--GACTTGCGGGACT.....	23	2	2.50	5	0	4	1	0	0	0	0	0	0	0
.TACCTTGTCTTTTTT----------------------------------------------------------------------------------------------------------------------------------TTAA----TTT--TTCAG................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	2	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATACAT----ATTTATGGACCA--GACT..............	22	2	2.00	4	0	2	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GAAA..............	28	2	2.00	4	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACTA.............	29	2	2.00	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTATACAT----ATTTATGGACCA--GAC...............	23	2	2.00	4	0	3	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--..................	24	2	2.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GAA...............	28	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAT----ATTTATGGACCA--GACT..............	19	2	1.50	3	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACTT.............	29	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATAGCGTATACAT----ATTTATGGACC.....................	25	2	1.50	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCGTATACAT----ATTTATGGACCA--GACT..............	26	2	1.50	3	0	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGA.......................	22	2	1.50	3	0	3	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTATGGACCA--GACTTGCGGG........	20	2	1.50	3	0	0	0	0	0	0	1	0	2	0
......................................................................................................................................................................................TAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------................................................................................................................	26	5	1.20	6	0	0	0	0	0	0	0	6	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GAAA..............	29	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TATACAT----ATTTATGGACCA--GACT..............	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTATGGACCA--GACTTGCGGGACTG....	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TATAAAA--ATTA--GAATA----------------------------------AAAATATATA..............................................	26	3	1.00	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................................................................................................................................................................................CGTATACAT----ATTTATGGACCA--GACT..............	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TATAAAA--ATTA--GAATA----------------------------------AAAATA..................................................	22	3	1.00	3	0	0	0	0	0	0	0	0	3	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACTAA............	30	2	1.00	2	0	0	0	0	0	0	0	2	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GT................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGAC......................	21	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AT----ATTTATGGACCA--GACT..............	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TA--GAATA----------------------------------AAAATATATAGCGTATACA.....................................	26	5	0.80	4	0	0	0	0	0	0	0	4	0	0
......................................................................................................................................................................................TAGGATATATATATATAAAATA........................................................................................................................................................................................	22	5	0.80	4	0	3	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................TTA--GAATA----------------------------------AAAATATATAGCGTATACA.....................................	27	5	0.60	3	0	0	0	0	0	0	0	3	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GACTT.............	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGG........................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACAT----ATTTATGGACCA--GACTTGCGG.........	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................A----------------------------------AAAATATATAGCGTATACAT----ATT.............................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GAAAA.............	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GAG...............	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ATACAT----ATTTATGGACCA--GAC...............	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--T.................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTATGGACCA--GACTTGCGG.........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TACAT----ATTTATGGACCA--GACTTGC...........	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ATAGCGTATACAT----ATTTATGGACCA--GAT...............	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GTAA..............	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................ACAT----ATTTATGGACCA--GACT..............	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATT.............................	15	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GATA..............	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACAA.............	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACTG.............	29	2	0.50	1	0	0	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................TTATGGACCA--GACTTGCGGGAC......	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGGGACTG....	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TATATAGCGTATACAT----ATTTATGGAC......................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGG........................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................TATAGCGTATACAT----ATTTATGGACCA--..................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................GCGTATACAT----ATTTATGGAC......................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................ATTTATGGACCA--GACTTGCGGGAC......	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACCA--GACAC.............	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGACA.....................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AGCGTATACAT----ATTTATGGACCA--GACC..............	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAGCGTATACAT----ATTTATGGA.......................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................TAGGATATATATATATAAAATAT---AA..................................................................................................................................................................................	25	5	0.40	2	0	0	0	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................TATAAAA--ATTA--GAATA----------------------------------AAAATATC................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................TATAAAA--ATTA--GAATA----------------------------------AAAATATA................................................	24	3	0.33	1	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGGGA.......	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGG.........	18	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TGGACCA--GACTTGCGGGACTGC...	22	4	0.25	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................ATTA--GAATA----------------------------------AAAATATATAGCGTATACA.....................................	28	4	0.25	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TGGACCA--GACTTGCGGGACTGCCG.	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGGGACTGCC..	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................TGGACCA--GACTTGCGGGACTG....	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGGGACT.....	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ACCA--GACTTGCGGGACTGCCGT	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................ACCA--GACTTGCGGGACTG....	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................TATGGACCA--GACTTGCGGGACC.....	22	5	0.20	1	0	0	0	0	1	0	0	0	0	0

droPer2

TTTTTTTTTTTT----------------------------------------------------------------------------------------------------------------------------------------------TT---TTTCATTT-------TA-AA-AATAGGATATATATATATAAAATAT---AAG-----------------------------------------------------------------AATATAAAA--ATTA--GAATA----------------------------------AAAATATATAGCGTATACAT----ATATATGGACCA--GACTTGCGGGACTGCCGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................GGACCA--GACTTGCGGGACTGCC..	22	4	0.50	2	2	0	0	0	0	0

droAna3

TTTTTTTTTTAA----------------------------------------------------------------------------------------------------------------------------------------------TC---GGTTTATT-------TACAA-----------------------GTTTAATAAAATA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-TA--GTGGAAATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGG-A.........................................................................................	25	9	16.56	149	33	109	7	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	27	9	15.89	143	66	75	2	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	25	9	15.78	142	55	82	5	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	25	9	9.89	89	16	70	3	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCGC	25	12	8.75	105	7	97	1	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	26	9	8.33	75	39	19	16	0	1	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CC..................................	24	13	5.00	65	7	56	2	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	24	9	4.33	39	12	15	12	0	0	0
.....................................................................................................................................................................................................................TA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-.................................................................................................................	27	14	4.29	60	7	49	4	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGG-..........................................................................................	24	9	3.89	35	5	21	9	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCT.................................	25	13	3.54	46	2	44	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CC..................................	26	13	3.31	43	8	33	2	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGC...........	25	12	3.25	39	10	24	5	0	0	0
................................................................................................................................................................................................................TAAAATA-------A---------------------------GGGAAAGTAAAATAAAGG........................................................................................................................	26	14	3.21	45	6	35	4	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGGAG.................................................................................	27	9	3.00	27	12	14	1	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGG...............................	27	13	2.77	36	21	14	0	1	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------C...................................	23	13	2.69	35	7	26	2	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CGA...............................................................................................	26	9	2.67	24	4	18	2	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGGA..................................................................................	26	9	2.67	24	6	16	2	0	0	0
................................................................................................................................................................................................................TAAAATA-------A---------------------------GGGAAAGTAAAATAAAGGG.......................................................................................................................	27	14	2.43	34	5	28	1	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CG................................................................................................	25	9	2.33	21	6	3	12	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTG............	24	12	2.33	28	17	10	1	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-A.........................................................................................	24	9	2.22	20	7	11	2	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	24	9	2.22	20	2	14	3	1	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCC..	23	12	2.17	26	2	23	1	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGGAAA......................................................................................................	26	9	2.11	19	2	16	1	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	26	9	2.11	19	5	14	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	26	9	2.00	18	3	12	3	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	23	9	1.89	17	3	13	1	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCC..............	22	13	1.85	24	0	22	2	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	25	9	1.67	15	5	7	3	0	0	0
.....................................................................................................................................................................................................................................................................................................TAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCC..............	27	13	1.54	20	2	18	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------C...................................	25	13	1.46	19	1	15	3	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	27	9	1.44	13	6	5	2	0	0	0
................................................................................................................................................................................................................TAAAATA-------A---------------------------GGGAAAGTAAAATAAAGGGA......................................................................................................................	28	14	1.43	20	3	16	1	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCGG.........	27	12	1.33	16	13	3	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--C.................................................................................................	24	9	1.33	12	0	11	1	0	0	0
........................................................................................................................................................................................................................................................................................TGGAAATT--CGATAGG-ATAGTGGAGG................................................................................	25	12	1.25	15	6	8	1	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGC...	25	12	1.25	15	4	11	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGG...............................	24	13	1.23	16	6	8	2	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CGAT..............................................................................................	27	9	1.22	11	3	8	0	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	28	9	1.22	11	5	5	1	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGGAGG................................................................................	28	9	1.22	11	3	8	0	0	0	0
........................................................................................................................................................................................................................................................................................TGGAAATT--CGATAGG-ATAGTGGAGGAG..............................................................................	27	12	1.17	14	9	5	0	0	0	0
.................................................................................................................................................................................................................................................................................C-TA--GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	26	9	1.11	10	5	5	0	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGG-AT........................................................................................	26	9	1.11	10	1	9	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTG................................	26	13	1.08	14	12	1	1	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-ATA.......................................................................................	25	9	1.00	9	3	6	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGG...............................	26	13	1.00	13	9	4	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------..................	28	13	1.00	13	2	11	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-..........................................................................................	23	9	1.00	9	0	5	3	0	1	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	27	9	1.00	9	3	6	0	0	0	0
.................................................................................................................................................................................................................................................................................C-TA--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	25	9	1.00	9	3	2	4	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CC..................................	27	13	1.00	13	1	12	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CC..................................	23	13	0.92	12	1	11	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCC.................................	25	13	0.92	12	0	12	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCT.............	23	12	0.92	11	4	4	3	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGGA........................................................................................................	24	9	0.89	8	1	6	1	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------....................................	22	13	0.85	11	1	8	2	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCG.	24	12	0.83	10	3	3	4	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CGAC..............................................................................................	27	9	0.78	7	0	7	0	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	22	9	0.78	7	0	7	0	0	0	0
........................................................................................................................................................................................................................................................................................TGGAAATT--CGATAGG-ATAGTGGAGGA...............................................................................	26	12	0.75	9	3	6	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TAGG-ATAGTGGAGGAGT-----------------------------------------CCTGG...............................	22	13	0.69	9	3	5	1	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAG..............................................................................	21	13	0.69	9	6	3	0	0	0	0
..............................................................................................................................................................................................................................................................AAGTAAAATAAAGGGAAAGC-TA--GTGG.........................................................................................................	26	9	0.67	6	3	2	1	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	27	9	0.67	6	0	6	0	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGC.....................................................................................	25	9	0.67	6	0	6	0	0	0	0
........................................................................................................................................................................................................................................................................................TGGAAATT--CGATAGG-ATAGTGGAG.................................................................................	24	12	0.67	8	3	4	1	0	0	0
.................................................................................................................................................................................................................................................................................C-TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	24	9	0.67	6	2	4	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCC..	26	12	0.67	8	4	4	0	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGTT....................................................................................	26	9	0.67	6	0	0	6	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGGAAAT.....................................................................................................	27	9	0.67	6	1	4	1	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGGA...............................................................................	23	13	0.62	8	0	6	2	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAG..............................................................................	23	13	0.62	8	0	6	1	0	1	0
........................................................................................................................................................................................................................................................................................................G-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTG............	26	12	0.58	7	6	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCGC	28	12	0.58	7	3	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCG..........	26	12	0.58	7	4	1	2	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCTGGT------------TTCCTGCGGTAATGC...	22	12	0.58	7	0	6	1	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATA.......................................................................................	24	9	0.56	5	2	2	1	0	0	0
....................................................................................................................................................................................................................................................................AATAAAGGGAAAGC-TA--GTGGAAATT--C.................................................................................................	26	9	0.56	5	1	2	1	0	1	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGG.........................................................................................................	23	9	0.56	5	2	2	1	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGG-ATA.......................................................................................	27	9	0.56	5	1	4	0	0	0	0
....................................................................................................................................................................................................................................................................................A--GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	24	9	0.56	5	4	1	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-ATAGC.....................................................................................	27	9	0.56	5	0	5	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGC------------..................	28	13	0.54	7	0	7	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------....................................	24	13	0.54	7	2	5	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------T.................	24	13	0.54	7	1	6	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATG....	24	12	0.50	6	5	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCGC	26	12	0.50	6	0	6	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------..................	27	13	0.46	6	0	6	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCT.................................	27	13	0.46	6	1	5	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGA...............................................................................	22	13	0.46	6	0	5	0	0	1	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-ATA.......................................................................................	26	9	0.44	4	1	3	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-ATAGC.....................................................................................	28	9	0.44	4	0	4	0	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGGAAATT--..................................................................................................	28	9	0.44	4	1	3	0	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--GTGGAA.......................................................................................................	25	9	0.44	4	1	2	1	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAG............................................................................................	23	9	0.44	4	1	1	2	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAGC.....................................................................................	26	9	0.44	4	0	4	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGGAAATT--CGATAGG-ATAGTGGAGG................................................................................	26	9	0.44	4	3	1	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-AT........................................................................................	25	9	0.44	4	0	4	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCGG.........	24	12	0.42	5	3	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................GGAAATT--CGATAGG-ATAGTGGAGG................................................................................	24	12	0.42	5	3	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAGT-----------------------------------------C...................................	22	13	0.38	5	1	3	1	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGGAG..............................................................................	24	13	0.38	5	2	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------....................................	25	13	0.38	5	0	4	1	0	0	0
.....................................................................................................................................................................................................................................................................................................TAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TT................	25	13	0.38	5	1	4	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCT.................................	24	13	0.38	5	1	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------C...................................	26	13	0.38	5	0	5	0	0	0	0
....................................................................................................................................................................................................................ATA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-.................................................................................................................	28	14	0.36	5	0	5	0	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATA.......................................................................................	23	9	0.33	3	0	2	1	0	0	0
......................................................................................................................................................................T-------TACAA-----------------------GTTTAATAAAATA-------A---------------------------GGGAAAG...................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	28	9	0.33	3	3	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CGATA.............................................................................................	28	9	0.33	3	1	1	1	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGTGGA..................................................................................	28	9	0.33	3	1	2	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAG............................................................................................	22	9	0.33	3	1	2	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	28	9	0.33	3	2	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CCTGGT------------TTCCTGCGGTAATGCCGC	24	12	0.33	4	1	3	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-A.........................................................................................	23	9	0.33	3	1	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGG...............................	25	13	0.31	4	2	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------T.................	26	13	0.31	4	0	4	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGC------------..................	25	13	0.31	4	0	4	0	0	0	0
...........................................................................................................................................................................................................................................................................................AAATT--CGATAGG-ATAGTGGAGG................................................................................	22	13	0.31	4	2	2	0	0	0	0
.................................................................................................................................................................................................................................................................TAAAATAAAGGGAAAGC-TA--G............................................................................................................	20	10	0.30	3	0	3	0	0	0	0
................................................................................................................................................................................................................TAAAATA-------A---------------------------GGGAAAGTAAAATAAAG.........................................................................................................................	25	14	0.29	4	0	4	0	0	0	0
...................................................................................................................................................................................................................AATA-------A---------------------------GGGAAAGTAAAATAAAGGGAAA....................................................................................................................	27	14	0.29	4	0	4	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGC-----------------------------------------....................................	24	14	0.29	4	0	4	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGC-----------------------------------------....................................	22	14	0.29	4	0	4	0	0	0	0
......................................................................................................................................................................................................................A-------A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-.................................................................................................................	26	14	0.29	4	0	4	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCG.	25	12	0.25	3	2	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................GGAAATT--CGATAGG-ATAGTGGAGGA...............................................................................	25	12	0.25	3	0	3	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTG............	23	12	0.25	3	3	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCC..	24	12	0.25	3	0	3	0	0	0	0
..............................................................................................................................................................................................................................................................................................................TGGAGGAGT-----------------------------------------CCTGGT------------TTCCTG............	21	12	0.25	3	3	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------C...................................	24	13	0.23	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAATT--CGATAGG-ATAGTGGAGGA...............................................................................	24	13	0.23	3	0	2	1	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGG................................................................................	21	13	0.23	3	2	1	0	0	0	0
............................................................................................................................................................................................................................................................................................AATT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTG................................	28	13	0.23	3	1	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCTG................................	23	13	0.23	3	2	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGGAAATT--CGATAGG-ATAGTGGAGGA...............................................................................	27	9	0.22	2	1	1	0	0	0	0
.............................................................................................................................................................................................................................................................................AAAGC-TA--GTGGAAATT--CGATAGG-ATAGT.....................................................................................	28	9	0.22	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--CT................................................................................................	25	9	0.22	2	0	0	2	0	0	0
....................................................................................................................................................................................................................................................................................A--GTGGAAATT--CGATAGG-ATAGTGGAG.................................................................................	26	9	0.22	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................AAGC-TA--GTGGAAATT--CGATAGG-AT........................................................................................	24	9	0.22	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGGAAATT--CGATAGG-ATAGTGGAG.................................................................................	25	9	0.22	2	0	1	1	0	0	0
.......................................................................................................................................................................................................................................................................AAAGGGAAAGC-TA--GTGGAAATT--CGAT..............................................................................................	26	9	0.22	2	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-A.........................................................................................	22	9	0.22	2	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-ATAGTGC...................................................................................	27	9	0.22	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAATT--..................................................................................................	23	9	0.22	2	0	2	0	0	0	0
.................................................................................................................................................................................................................................................................................C-TA--GTGGAAATT--CGATAGG-ATAGTGGA..................................................................................	27	9	0.22	2	1	1	0	0	0	0
....................................................................................................................................................................................................................................................................................A--GTGGAAATT--CGATAGG-ATAGTG....................................................................................	23	9	0.22	2	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................GTGGAAATT--CGATAGG-ATAGTGG...................................................................................	23	9	0.22	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-ATAA......................................................................................	25	9	0.22	2	0	1	1	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-AT........................................................................................	22	9	0.22	2	0	0	2	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGGAC.................................................................................	27	9	0.22	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-ATAGTGC...................................................................................	25	9	0.22	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGGAAA......................................................................................................	21	9	0.22	2	1	1	0	0	0	0
...........................................................................................................................................................................................................................................................................GGAAAGC-TA--GTGGAAATT--CGATAG............................................................................................	24	9	0.22	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................GC-TA--GTGGAAATT--CGATAGG-..........................................................................................	20	9	0.22	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................A---------------------------GGGAAAGTAAAATAAAGGGAAAGC-.................................................................................................................	25	14	0.21	3	1	2	0	0	0	0
.....................................................................................................................................................................................................................TA-------A---------------------------GGGAAAGTAAAATAAAGGG.......................................................................................................................	22	14	0.21	3	1	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGT...........	25	12	0.17	2	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGCG..........	25	12	0.17	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................G-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGC...........	27	12	0.17	2	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................GAGGAGT-----------------------------------------CCTGGT------------TTCCTGCG..........	21	12	0.17	2	2	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCTGGT------------TTCCTGCGGTAATG....	21	12	0.17	2	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAATGCCG.	27	12	0.17	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGTGGAGGAGT-----------------------------------------CCTGGT------------TTCCTGC...........	24	12	0.17	2	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TGGT------------TTCCTGCGGTAATGCC..	20	12	0.17	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GGT------------TTCCTGCGGTAATGCCGC	21	12	0.17	2	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................TGGAAATT--CGATAGG-ATAGTGG...................................................................................	22	12	0.17	2	1	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................GAGT-----------------------------------------CCTGGT------------TTCCTGCGGTAAT.....	23	12	0.17	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------T...................................	23	13	0.15	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................TAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------TTC...............	26	13	0.15	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCT.................................	23	13	0.15	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................T--CGATAGG-ATAGTGGAGGAG..............................................................................	20	13	0.15	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAATT--CGATAGG-ATAGTGGAG.................................................................................	22	13	0.15	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCT.................................	22	13	0.15	2	0	2	0	0	0	0
..........................................................................................................................................................................................................................................................................................GAAATT--CGATAGG-ATAGTGGAGG................................................................................	23	13	0.15	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................AGTGGAGGAGT-----------------------------------------CCTGGT------------TTCC..............	21	13	0.15	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGT...............................	27	13	0.15	2	2	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGGA...............................................................................	20	13	0.15	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................TT--CGATAGG-ATAGTGGAGG................................................................................	19	13	0.15	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GATAGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------..................	25	13	0.15	2	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................AGG-ATAGTGGAGGAGT-----------------------------------------CCTGGT------------T.................	23	13	0.15	2	1	1	0	0	0	0
.................................................................................................................................................................................................................AAAATA-------A---------------------------GGGAAAGTAAAATAAAGGGA......................................................................................................................	27	14	0.14	2	1	1	0	0	0	0
...................................................................................................................................................................................................................AATA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAG...................................................................................................................	28	14	0.14	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................TA-------A---------------------------GGGAAAGTAAAATAAAGGGAAAG...................................................................................................................	26	14	0.14	2	0	2	0	0	0	0
................................................................................................................................................................................................................TAAAATA-------A---------------------------GGGAAAGTAAAATAAAGGT.......................................................................................................................	27	14	0.14	2	0	2	0	0	0	0
..................................................................................................................................................................................................................AAATA-------A---------------------------GGGAAAGTAAAATAAAGGG.......................................................................................................................	25	14	0.14	2	0	2	0	0	0	0
..................................................................................................................................................................................................................AAATA-------A---------------------------GGGAAAGTAAAATAAAGG........................................................................................................................	24	14	0.14	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................AGC-TA--GTGGAAATT--CGATAGG-..........................................................................................	21	9	0.11	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................TA--GTGGAAATT--CGATAGG-AT........................................................................................	20	9	0.11	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAAAGGGAAAGC-TA--GTGG.........................................................................................................	18	9	0.11	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................AGTAAAATAAAGGGAAAGC-TA--GTGGAAA......................................................................................................	28	9	0.11	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................GAAAGC-TA--GTGGAAATT--CGATAGC-..........................................................................................	24	9	0.11	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................A--GTGGAAATT--CGATAGG-ATAGTGGA..................................................................................	25	9	0.11	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................AAATAAAGGGAAAGC-TA--GTGGAAATT--C.................................................................................................	27	9	0.11	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................C-TA--GTGGAAATT--CGATAGG-ATAG......................................................................................	23	9	0.11	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................AAAGGGAAAGC-TA--GTGGAAATT--CGATA.............................................................................................	27	9	0.11	1	1	0	0	0	0	0

droBip1

TTTTTTTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------TGTACTTTTGTTT-------TA-TT-----------------------------AATATCAACAACAAT-----TAAC----------ATACATA---------------------------AATATAACC--ATAA--TAATAAG----------------------------------GGTGGAAAGG---TGGTT----GTTCATGGATTGAGTGCGGGCGGGACGACCGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAAGAGAAAT-------------------------------------------------------------------------------------------------------GTTGTTTATGCATGGGTCCTTCGGACGTTTTTTTTTTGTATTC---TTTTATTT-------GA-AA-AA----ACATA-AAACATAACATTT---AAG-----------------------------------------------------------------ACTATAACT--ACAT--AAGTA-----------ACACAGGGTTGATGGGAAGGACAAACAGAAACAGTGTAGAGGGCC----GTA----------TCGCGCGGTACCGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTTTGCATGTTAGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGATCTACCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGTTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CGATCTGCCATGGATGAATATCAACATATGCTATTCGCTCTGCATGTTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CGACCTGCCCTGGATGAACATCAACATCTGCTACTCGCTGTGCATGTTGGGTGAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ACATCAGTGCAGTT---------------------------------------------------------------------------------------------------------------------------------TTTTTGCCTTTTT---TTTTATTT-------AA-CGGTA-----------------------------ATTTAG-------TACAAGATACTTTTTAATAT-------------------------------------ACAT-------------ATAAAGGGTTATT-----------------------------------------GCT------------G--GGTTTGCGGTACTGCCAT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GGATCTGTCCTGGATGAACATTAACATATGCTATTCGCTGTGCATGTTGGGTAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total
No Reads

dm3

GACTAACTTTT-----------------------------------------------------------------------------------------------------------------------------------------TTTTATTC---GTTTATTT-------GA-CA-----------------------TCT---AAGATTAAAATTAAT-----TAAA----------GTAAATAAC-------------------------AATGTAAAA--ACAA--CAGTAATAGAGGGCAAAT-----------------------------------------CCAGATC-----------CCCCAGCGGTATGGCCGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................................CAA--CAGTAATAGAGGGCAAA..............................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................A--ACAA--CAGTAATAGAGGGCAAAT-----------------------------------------C...................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ACAA--CAGTAATAGAGGGCAAA..............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TAAATAAC-------------------------AATGTAAAA--AC...................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................T---AAGATTAAAATTAAT-----TAAA----------GTAAA.............................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................AA--ACAA--CAGTAATAGAGGGCAA...............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TAAC-------------------------AATGTAAAA--ACAA--CAGTAATA.......................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AAT-----------------------------------------CCAGATC-----------CCCCAGCGGTA.......	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGATC-----------CCCCAGCGGTATG.....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....TGCCCTGGATGAACATCAACATATGC.....................................................................................................................................................................................................................................................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
..........TGGATGAACATCAACATATGCTACT.................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.........CTGGATGAACATCAACATATG......................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......GCCCTGGATGAACATCAACATATGC.....................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.........CTGGATGAACATCAACATATGCTACTC................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................CTACTCGCTGTGCATGCTGGT.................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCAACATATGCTACTCGCTG............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAACATATGCTACTCGCTGT...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............GAACATCAACATATGCTACTCGCTGT...........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGCCCTGGATGAACATCA.............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TTTTTTTTTAAT----------------------------------------------------------------------------------------------------------------------------------------------TC---GTTTATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTTAACTATTTTCAATAT----AACATT--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATT................................................................................................................................................................	25	6	10.83	65	57	0	8	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TAT.................................................................................................................................................................	24	6	8.50	51	40	0	10	1
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGG.........	22	14	7.50	105	35	0	69	1
........................................................................................................................................................................................................................................TATTTTCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	25	1	6.00	6	6	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TA..................................................................................................................................................................	23	6	3.67	22	20	0	2	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGT........	23	14	3.00	42	12	0	27	3
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTA.......	24	14	2.29	32	18	0	11	3
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATG.....	26	14	2.07	29	13	0	11	5
............................................................................................................................................................................................................................................................TT--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CCAGGAC-----------TCC...............	25	1	2.00	2	1	0	1	0
...........................................................................................................................................................................................................................................TTTCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	22	1	2.00	2	2	0	0	0
........................................................................................................................................................................................................................................TATTTTCAATAT----AACATT--------------------------------------------AGGGAGGGC.................................................................................	27	1	2.00	2	0	0	2	0
..........................................................................................................................................................................................................................................TTTTCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	23	1	2.00	2	2	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTT...............................................................................................................................................................	26	6	1.67	10	10	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCG..........	21	15	1.33	20	12	0	7	1
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTTAAC............................................................................................................................................................	29	3	1.33	4	4	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGC...	28	14	1.29	18	18	0	0	0
............................................................................................................................................................................................................................................TTCAATAT----AACATT--------------------------------------------AGGGAGGGCAA...............................................................................	25	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................TATTTTCAATAT----AACATT--------------------------------------------AGGGAGGG..................................................................................	26	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................TTCAATAT----AACATT--------------------------------------------AGGGAG....................................................................................	20	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................TAACTATTTTCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	29	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................................................TTTAACTATTTTCAATAT----AACATT--------------------------------------------..........................................................................................	24	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................TTTCAATAT----AACATT--------------------------------------------AGGGAGGGC.................................................................................	24	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................TTCAATAT----AACATT--------------------------------------------AGGGAGGGC.................................................................................	23	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................TAT----AACATT--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CC..................................	24	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................TCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	20	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................................................TATTTTCAATAT----AACATT--------------------------------------------AGGGT.....................................................................................	23	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................ACATT--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CCAGGA..............................	24	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................AACTATTTTCAATAT----AACATT--------------------------------------------AGGGAGG...................................................................................	28	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................TTTTCAATAT----AACATT--------------------------------------------AGGGAGGGC.................................................................................	25	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................TTTCAATAT----AACATT--------------------------------------------AGGGAGGGCAAA..............................................................................	27	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................T--------------------------------------------AGGGAGGGCAAAT-----------------------------------------CCAGGAC-----------TCC...............	24	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................TTTAACTATTTTCAATAT----AACATT--------------------------------------------AGGGA.....................................................................................	29	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................AACTATTTTCAATAT----AACATT--------------------------------------------AGGGA.....................................................................................	26	1	1.00	1	1	0	0	0
............................................................................................................................................................................................................................................TTCAATAT----AACATT--------------------------------------------AGGGAGA...................................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................TTTTCAATAT----AACATT--------------------------------------------AGGGAGGGCA................................................................................	26	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................TTTTCAATAT----AACATT--------------------------------------------AGGGAGGGCAA...............................................................................	27	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................TAACTATTTTCAATAT----AACATT--------------------------------------------AGGG......................................................................................	26	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................TTTTCAATAT----AACATT--------------------------------------------AGGGAGGGCAAA..............................................................................	28	1	1.00	1	1	0	0	0
....................................................................................................................................................................................................................................TAACTATTTTCAATAT----AACATT--------------------------------------------AGGGA.....................................................................................	27	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTAT......	25	14	0.71	10	6	0	3	1
...................................................................................................................................................................ATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TAT.................................................................................................................................................................	23	6	0.50	3	3	0	0	0
...................................................................................................................................................................ATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATT................................................................................................................................................................	24	6	0.50	3	3	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGG....	27	14	0.43	6	6	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGC...........	20	18	0.39	7	6	0	1	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCG.	25	20	0.35	7	2	0	5	0
.................................................................................................................................................................TTATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATT................................................................................................................................................................	26	6	0.33	2	2	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCGT	26	20	0.30	6	3	0	3	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGT........	22	18	0.22	4	4	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTA.......	23	18	0.22	4	4	0	0	0
.................................................................................................................................................................TTATTG-------AA-CC-----------------------ATT---AAGATTAAC-------T...................................................................................................................................................................	23	6	0.17	1	1	0	0	0
...................................................................................................................................................................ATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TA..................................................................................................................................................................	22	6	0.17	1	1	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTTA..............................................................................................................................................................	27	6	0.17	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGG.........	21	18	0.17	3	3	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATA................................................................................................................................................................	25	6	0.17	1	1	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTA...............................................................................................................................................................	26	6	0.17	1	1	0	0	0
....................................................................................................................................................................TTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATT................................................................................................................................................................	23	6	0.17	1	1	0	0	0
...................................................................................................................................................................ATTG-------AA-CC-----------------------ATT---AAGATTAAC-------TATTT...............................................................................................................................................................	25	6	0.17	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................AGGGCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGG.........	25	14	0.14	2	1	0	1	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAT-------....................................................................................................................................................................	21	7	0.14	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGG....	26	18	0.11	2	2	0	0	0
..................................................................................................................................................................TATTG-------AA-CC-----------------------ATT---AAGATTAAA-------AT..................................................................................................................................................................	23	9	0.11	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................AT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCG.	26	18	0.11	2	0	0	1	1
...................................................................................................................................................................................................................................................................................................................AAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTA.......	22	18	0.11	2	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................CAGGAC-----------TCCCCGCGGTATGGC...	21	20	0.10	2	1	0	0	1
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCC..	24	20	0.10	2	0	0	2	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCC..	29	14	0.07	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATA.....	26	15	0.07	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................AAT-----------------------------------------CCAGGAC-----------TCCCCGCGGT........	20	18	0.06	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................AT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCGT	27	18	0.06	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGC...	27	18	0.06	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................AGGGCAAAT-----------------------------------------CCAGGAC-----------TCCC..............	20	18	0.06	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCCG.	27	18	0.06	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................GGGCAAAT-----------------------------------------CCAGGAC-----------TCCCCG............	21	18	0.06	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGC...	25	18	0.06	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................GCAAAT-----------------------------------------CCAGGAC-----------TCCCCG............	19	18	0.06	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................AAAT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGCC..	27	18	0.06	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................AT-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGC...	24	18	0.06	1	1	0	0	0
....................................................................................................................................................................................................................................................................................................................AAT-----------------------------------------CCAGGAC-----------TCCCCGCGG.........	19	18	0.06	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................CAAAT-----------------------------------------CCAGGAC-----------TCCCCGCG..........	20	19	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGGC...	23	20	0.05	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AGGAC-----------TCCCCGCGGTATGGCC..	21	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATGG....	22	20	0.05	1	1	0	0	0
......................................................................................................................................................................................................................................................................................................................T-----------------------------------------CCAGGAC-----------TCCCCGCGGTATG.....	21	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................CAGGAC-----------TCCCCGCGGTATGGCCGT	24	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................CCAGGAC-----------TCCCCGCGGTATGGCC..	23	20	0.05	1	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................AGGAC-----------TCCCCGCGGTATGGC...	20	20	0.05	1	1	0	0	0

droYak3

TGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTATGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...........GGATGAACATCAACATATGCTACTC................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
........................CATATGCTACTCGCTATGCATGCTGGT.................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................ATGCTACTCGCTATGCATGCTGGT.................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

GGATCTGCCCTGGATGAACATCAACATATGCTACTCGCTGTGCATGCTGGGTGAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.GATCTGCCCTGGATGAACATCAAC...........................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	1	0	1	0	0	0
..................................TCGCTGTGCATGCTGGGTGA..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0

dwi_3695

scf2_1100000004954:1743175-1743325 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-18.2	-18.0	-17.9